Pregenerated sensors for RAB26 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079657Ensembl transcript IDs: ENSMUST00000035797.16, ENSMUST00000061764.14, ENSMUST00000176533.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCGCGCTCCACCGCACTCCCCGGAAGAAGGAGCCCCAGGTCTTGTaGTCCGCGCACTCACTCACCCGCCCGCGGCTGCCTAGGAGCAGC | + |
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Preference number: 1 (lower is better) Translates to: PALHRTPRKKEPQVL*SAHSLTRPRLPRSS Trigger: GCTGCTCCTAGGCAGCCGCGGGCGGGTGAGTGAGTGCGCGGAGCACAAGACCTGGGGCTCCTTCTTCCGGGGAGTGCGGTGGAGCGCGGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR CCA 90 bp | GTCCTGTCTGAGCAGTGTGCTGCGTGTGGTCCCCCTCCTCACTTCTaGGAGTGCCCAGAAGAGGGCAGCAATGTGCTGTGGCCTGGTTTT | + |
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Preference number: 1 (lower is better) Translates to: VLSEQCAACGPPPHF*ECPEEGSNVLWPGF Trigger: AAAACCAGGCCACAGCACATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAGCACACTGCTCAGACAGGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR GCA 90 bp | TCTGAGCAGTGTGCTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTaGCCAGAAGAGGGCAGCAATGTGCTGTGGCCTGGTTTTTATGCT | + |
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Preference number: 1 (lower is better) Translates to: SEQCAACGPPPHFWE*PEEGSNVLWPGFYA Trigger: AGCATAAAAACCAGGCCACAGCACATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAGCACACTGCTCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR CCA 90 bp | CCTCCTCACTTCTGGGAGTGCCCAGAAGAGGGCAGCAATGTGCTGTaGCCTGGTTTTTATGCTTCAAGACCATTTCTGGTGGCCACTGGG | + |
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Preference number: 1 (lower is better) Translates to: PPHFWECPEEGSNVL*PGFYASRPFLVATG Trigger: CCCAGTGGCCACCAGAAATGGTCTTGAAGCATAAAAACCAGGCCACAGCACATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGAGGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR CCA 90 bp | TCACTTCTGGGAGTGCCCAGAAGAGGGCAGCAATGTGCTGTGGCCTaGTTTTTATGCTTCAAGACCATTTCTGGTGGCCACTGGGGCAAA | + |
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Preference number: 1 (lower is better) Translates to: SLLGVPRRGQQCAVA*FLCFKTISGGHWGK Trigger: TTTGCCCCAGTGGCCACCAGAAATGGTCTTGAAGCATAAAAACCAGGCCACAGCACATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR CCA 90 bp | GTTACCAAAGTCTTGAGACATTTTTGTCATAACAAAACAGGGCTGTaGGTGTTACTACTACCATTCAGTGAACAAACTCAGAATTGCTGC | + |
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Preference number: 1 (lower is better) Translates to: VTKVLRHFCHNKTGL*VLLLPFSEQTQNCC Trigger: GCAGCAATTCTGAGTTTGTTCACTGAATGGTAGTAGTAACACCCACAGCCCTGTTTTGTTATGACAAAAATGTCTCAAGACTTTGGTAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR CAA 90 bp | CAGCCCGCGCTCCACCGCACTCCCCGGAAGAAGGAGCCCCAGGTCTaGTGCTCCGCGCACTCACTCACCCGCCCGCGGCTGCCTAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: QPALHRTPRKKEPQV*CSAHSLTRPRLPRS Trigger: GCTCCTAGGCAGCCGCGGGCGGGTGAGTGAGTGCGCGGAGCACAAGACCTGGGGCTCCTTCTTCCGGGGAGTGCGGTGGAGCGCGGGCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR-3UTR GCA 90 bp | CGCTCGCGACGCTCCCACAACCAGCCCGCGCTCCACCGCACTCCCCGGAAGAAGGAGCCCCAGGTCTTGTaGTCCGCGCACTCACTCACC | + |
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Preference number: 2 (lower is better) Translates to: RSRRSHNQPALHRTPRKKEPQVL*SAHSLT Trigger: GGTGAGTGAGTGCGCGGAGCACAAGACCTGGGGCTC...CTTCTTCCGGGGAGTGCGGTGGAGCGCGGGCTGGTTGTGGGAGCGTCGCGAGCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR-3UTR CCA 90 bp | TCCTGTCTGAGCAGTGTGCTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTGCCCTTCAAGACCATTTCTaGTGGCCACTGGGGCAAAGG | + |
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Preference number: 2 (lower is better) Translates to: SCLSSVLRVVPLLTSGSALQDHF*WPLGQR Trigger: CCTTTGCCCCAGTGGCCACCAGAAATGGTCTTGAAG...GGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAGCACACTGCTCAGACAGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR CAA 90 bp | GTGAGTCGGAAGCAGTCCAACAAATGGACAGTGACTGACATAGCCTaGAGTGGGGTCCTGTCTGAGCAGTGTGCTGCGTGTGGTCCCCCT | + |
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Preference number: 2 (lower is better) Translates to: VSRKQSNKWTVTDIA*SGVLSEQCAACGPP Trigger: AGGGGGACCACACGCAGCACACTGCTCAGACAGGACCCCACTCAAGGCTATGTCAGTCACTGTCCATTTGTTGGACTGCTTCCGACTCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR CAA 90 bp | ACAGTACTGCAGGTGAGTTGCCACAAGGAGACAGTTACCAAAGTCTaGAGACATTTTTGTCATAACAAAACAGGGCTGTGGGTGTTACTA | + |
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Preference number: 2 (lower is better) Translates to: TVLQVSCHKETVTKV*RHFCHNKTGLWVLL Trigger: TAGTAACACCCACAGCCCTGTTTTGTTATGACAAAAATGTCTCAAGACTTTGGTAACTGTCTCCTTGTGGCAACTCACCTGCAGTACTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR-3UTR CCA 90 bp | GCAGGTGAGTTGCCACAAGGAGACAGTTACCAAAGTCTTGAGACATTTTTGTCAAACAAAACAGGGCTGTaGGTGTTACTACTACCATTC | + |
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Preference number: 2 (lower is better) Translates to: AGELPQGDSYQSLETFLSNKTGL*VLLLPF Trigger: GAATGGTAGTAGTAACACCCACAGCCCTGTTTTGTT...TGACAAAAATGTCTCAAGACTTTGGTAACTGTCTCCTTGTGGCAACTCACCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR-3UTR TCA 90 bp | GCAGGTGAGTTGCCACAAGGAGACAGTTACCAAAGTCTTGAGACATTTTTGTCAACTACTACCATTCAGTaGACAAACTCAGAATTGCTG | + |
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Preference number: 2 (lower is better) Translates to: AGELPQGDSYQSLETFLSTTTIQ*TNSELL Trigger: CAGCAATTCTGAGTTTGTTCACTGAATGGTAGTAGT...TGACAAAAATGTCTCAAGACTTTGGTAACTGTCTCCTTGTGGCAACTCACCTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR-3UTR GCA 90 bp | GTCTTGAGACATTTTTGTCATAACAAAACAGGGCTGTGGGTGTTACTACTACCAGAACAAACTCAGAATTaGTGCTGGACTGCGTACAAT | + |
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Preference number: 2 (lower is better) Translates to: VLRHFCHNKTGLWVLLLPEQTQN*CWTAYN Trigger: ATTGTACGCAGTCCAGCAGCAATTCTGAGTTTGTTC...TGGTAGTAGTAACACCCACAGCCCTGTTTTGTTATGACAAAAATGTCTCAAGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR GCA 72 bp | CACCGCACTCCCCGGAAGAAGGAGCCCCAGGTCTTGTaGTCCGCGCACTCACTCACCCGCCCGCGGCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: HRTPRKKEPQVL*SAHSLTRPRLP Trigger: AGGCAGCCGCGGGCGGGTGAGTGAGTGCGCGGAGCACAAGACCTGGGGCTCCTTCTTCCGGGGAGTGCGGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR TCA 72 bp | GAGGCAGAATGGTCTGTCTCAAAACCGCGTACCAGATaGGCTTATCAGTTTGGAATCCGGTTCTCCGCCGAC | + |
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Preference number: 3 (lower is better) Translates to: EAEWSVSKPRTR*AYQFGIRFSAD Trigger: GTCGGCGGAGAACCGGATTCCAAACTGATAAGCTCATCTGGTACGCGGTTTTGAGACAGACCATTCTGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR GCA 72 bp | AGAAGAGGGCAGCAATGTGCTGTGGCCTGGTTTTTATaGTTCAAGACCATTTCTGGTGGCCACTGGGGCAAA | + |
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Preference number: 3 (lower is better) Translates to: RRGQQCAVAWFL*FKTISGGHWGK Trigger: TTTGCCCCAGTGGCCACCAGAAATGGTCTTGAAGCATAAAAACCAGGCCACAGCACATTGCTGCCCTCTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR GCA 72 bp | CTCACTTCTGGGAGTGCCCAGAAGAGGGCAGCAATGTaGTGTGGCCTGGTTTTTATGCTTCAAGACCATTTC | + |
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Preference number: 3 (lower is better) Translates to: LTSGSAQKRAAM*CGLVFMLQDHF Trigger: GAAATGGTCTTGAAGCATAAAAACCAGGCCACAGCACATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR CCA 72 bp | TTCTGGGAGTGCCCAGAAGAGGGCAGCAATGTGCTGTaGCCTGGTTTTTATGCTTCAAGACCATTTCTGGTG | + |
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Preference number: 3 (lower is better) Translates to: FWECPEEGSNVL*PGFYASRPFLV Trigger: CACCAGAAATGGTCTTGAAGCATAAAAACCAGGCCACAGCACATTGCTGCCCTCTTCTGGGCACTCCCAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR GCA 72 bp | AAGTCTATAGACTCGGGCAATTCTCAAAGGCAGAACTaGTTCCTCCAGCGTGGAACTGAGTTTCAGCAAGGT | + |
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Preference number: 3 (lower is better) Translates to: KSIDSGNSQRQN*FLQRGTEFQQG Trigger: ACCTTGCTGAAACTCAGTTCCACGCTGGAGGAAGCAGTTCTGCCTTTGAGAATTGCCCGAGTCTATAGACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR-3UTR CAA 90 bp | AGTTGCCACAAGGAGACAGTTACCAAAGTCTTGAGACATTTTTGTCATAACAAAAGCCTAGGATACTGCTaGGCACACAGGCAGCGCTCA | + |
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Preference number: 3 (lower is better) Translates to: SCHKETVTKVLRHFCHNKSLGYC*AHRQRS Trigger: TGAGCGCTGCCTGTGTGCCAAGCAGTATCCTAGGCT...TTTGTTATGACAAAAATGTCTCAAGACTTTGGTAACTGTCTCCTTGTGGCAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR TCA 72 bp | TGCAAAGACAACGAAAGAGAGAGTGAAGGGAAGGAGTaGCAGACGGATTTACTTGGAGTCAGGAGGACTTAT | + |
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Preference number: 3 (lower is better) Translates to: CKDNERESEGKE*QTDLLGVRRTY Trigger: ATAAGTCCTCCTGACTCCAAGTAAATCCGTCTGTCACTCCTTCCCTTCACTCTCTCTTTCGTTGTCTTTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR TCA 72 bp | CAAAACAGGGCTGTGGGTGTTACTACTACCATTCAGTaGACAAACTCAGAATTGCTGCTGGACTGCGTACAA | + |
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Preference number: 3 (lower is better) Translates to: QNRAVGVTTTIQ*TNSELLLDCVQ Trigger: TTGTACGCAGTCCAGCAGCAATTCTGAGTTTGTTCACTGAATGGTAGTAGTAACACCCACAGCCCTGTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR GCA 72 bp | GTGTTACTACTACCATTCAGTGAACAAACTCAGAATTaGTGCTGGACTGCGTACAATGCACAGGACCCTAGA | + |
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Preference number: 3 (lower is better) Translates to: VLLLPFSEQTQN*CWTAYNAQDPR Trigger: TCTAGGGTCCTGTGCATTGTACGCAGTCCAGCAGCAATTCTGAGTTTGTTCACTGAATGGTAGTAGTAACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR TCA 72 bp | AAAAACATAGGAGTGCAAAGACAACGAAAGAGAGAGTaGAGGGAAGGAGTGACAGACGGATTTACTTGGAGT | + |
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Preference number: 3 (lower is better) Translates to: KNIGVQRQRKRE*REGVTDGFTWS Trigger: ACTCCAAGTAAATCCGTCTGTCACTCCTTCCCTTCACTCTCTCTTTCGTTGTCTTTGCACTCCTATGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR CCA 72 bp | GTCTTGAGACATTTTTGTCATAACAAAACAGGGCTGTaGGTGTTACTACTACCATTCAGTGAACAAACTCAG | + |
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Preference number: 3 (lower is better) Translates to: VLRHFCHNKTGL*VLLLPFSEQTQ Trigger: CTGAGTTTGTTCACTGAATGGTAGTAGTAACACCCACAGCCCTGTTTTGTTATGACAAAAATGTCTCAAGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| CDS-3UTR GCA 90 bp | AGGCTAGGCCCACGACCGCTCGCGACGCTCCCACAACCAGCCCGCGCTCCACCGCCACCGGCATCATCTTaGCCCTCTCGGCCCGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: RLGPRPLATLPQPARAPPPPASS*PSRPAA Trigger: GGCCGCGGGCCGAGAGGGGCAAGATGATGCCGGTGG...CGGTGGAGCGCGGGCTGGTTGTGGGAGCGTCGCGAGCGGTCGTGGGCCTAGCCT 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| CDS-3UTR CCA 90 bp | CGCTCGCGACGCTCCCACAACCAGCCCGCGCTCCACCGCACTCCCCGGAAGAAGATTGGGCGGTGCCTCTaGGCCAGGGCGCACAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: RSRRSHNQPALHRTPRKKIGRCL*ARAHSP Trigger: AGGACTGTGCGCCCTGGCCCAGAGGCACCGCCCAAT...CTTCTTCCGGGGAGTGCGGTGGAGCGCGGGCTGGTTGTGGGAGCGTCGCGAGCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| CDS-3UTR TCA 90 bp | GCTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTGCCCAGAAGAGGGCAGCAATTGTTCCCTAGCAGCATaGGCACCACATCCTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: AACGPPPHFWECPEEGSNCSLAA*APHPAG Trigger: CCCAGCAGGATGTGGTGCTCATGCTGCTAGGGAACA...ATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR CCA 90 bp | TTGGAATCCGGTTCTCCGCCGACTTTCCAGAGCCTAGGATACTGCTTGGCACACCGGATGTGCCAGACGTaGCCCATTGGTGGCGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: LESGSPPTFQSLGYCLAHRMCQT*PIGGGG Trigger: GCCGCCGCCACCAATGGGCCACGTCTGGCACATCCG...GTGTGCCAAGCAGTATCCTAGGCTCTGGAAAGTCGGCGGAGAACCGGATTCCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| CDS-3UTR GCA 90 bp | TCCTGTCTGAGCAGTGTGCTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTGCCCGTAGAAGTCTCCAGTaGTACCAAGTGAGGGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: SCLSSVLRVVPLLTSGSARRSLQ*YQVRAG Trigger: TCCGGCCCTCACTTGGTAGCACTGGAGACTTCTACG...GGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAGCACACTGCTCAGACAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR GCA 90 bp | TGTGCTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTGCCCAGAAGAGGGCAGCGCTGTGTCCCAGATCTaGAGCTTCACCTTCATGCCA | + |
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Preference number: 4 (lower is better) Translates to: CAACGPPPHFWECPEEGSAVSQI*SFTFMP Trigger: TGGCATGAAGGTGAAGCTGCAGATCTGGGACACAGC...GCTGCCCTCTTCTGGGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAGCACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR TCA 90 bp | CTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTGCCCAGAAGAGGGCAGCAATGTTGCGCTGGTCTCCATaGAAGGTAGCCCATACTCCT | + |
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Preference number: 4 (lower is better) Translates to: LRVVPLLTSGSAQKRAAMLRWSP*KVAHTP Trigger: AGGAGTATGGGCTACCTTTCATGGAGACCAGCGCAA...CATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR CCA 90 bp | CTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTGCCCAGAAGAGGGCAGCAATGTGCTGGGCATATTCCTaGATCTCTGTCAACCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: LRVVPLLTSGSAQKRAAMCWAYS*ISVNQA Trigger: GGCCTGGTTGACAGAGATCCAGGAATATGCCCAGCA...CATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR TCA 90 bp | GTGCTGTGGCCTGGTTTTTATGCTTCAAGACCATTTCTGGTGGCCACTGGGGCACATAGTCATGCAGCCTaGAGCGCGGCTCGCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: VLWPGFYASRPFLVATGAHSHAA*SAARWE Trigger: CTCCCAGCGAGCCGCGCTTCAGGCTGCATGACTATG...TGCCCCAGTGGCCACCAGAAATGGTCTTGAAGCATAAAAACCAGGCCACAGCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR GCA 90 bp | CTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTGCCCAGAAGAGGGCAGCAATGATGAGCACCACATCCTaGTGGGCATATTCCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: LRVVPLLTSGSAQKRAAMMSTTS*WAYSWI Trigger: GATCCAGGAATATGCCCAGCAGGATGTGGTGCTCAT...CATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR CCA 90 bp | GACAAGTCTATAGACTCGGGCAATTCTCAAAGGCAGAACTGCTTCCTCCAGCGTCGGATGTGCCAGACGTaGCCCATTGGTGGCGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: DKSIDSGNSQRQNCFLQRRMCQT*PIGGGG Trigger: GCCGCCGCCACCAATGGGCCACGTCTGGCACATCCG...ACGCTGGAGGAAGCAGTTCTGCCTTTGAGAATTGCCCGAGTCTATAGACTTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR TCA 90 bp | TGTGGCCTGGTTTTTATGCTTCAAGACCATTTCTGGTGGCCACTGGGGCAAAGGAAGCCAAGTCCACGTTaGGGCCAGTCCTTGCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: CGLVFMLQDHFWWPLGQRKPSPR*GQSLRW Trigger: CCAGCGCAAGGACTGGCCTCAACGTGGACTTGGCTT...CCTTTGCCCCAGTGGCCACCAGAAATGGTCTTGAAGCATAAAAACCAGGCCACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR CCA 90 bp | CAGAAGAGGGCAGCAATGTGCTGTGGCCTGGTTTTTATGCTTCAAGACCATTTCATTGGGCGGTGCCTCTaGGCCAGGGCGCACAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: QKRAAMCCGLVFMLQDHFIGRCL*ARAHSP Trigger: AGGACTGTGCGCCCTGGCCCAGAGGCACCGCCCAAT...GAAATGGTCTTGAAGCATAAAAACCAGGCCACAGCACATTGCTGCCCTCTTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR GCA 90 bp | GCTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTGCCCAGAAGAGGGCAGCAATCTGTTTCAGCTCCTTTaGTATGGCTGTAAAAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: AACGPPPHFWECPEEGSNLFQLL*YGCKSQ Trigger: TTGGCTTTTACAGCCATAGCAAAGGAGCTGAAACAG...ATTGCTGCCCTCTTCTGGGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS-3UTR GCA 90 bp | GACCATTTCTGGTGGCCACTGGGGCAAAGGGTAAGCATTAGCCTCTGGTGTCTTGCAGCTTCACCTTCATaGCATCCACATCCAGAACTT | + |
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Preference number: 4 (lower is better) Translates to: DHFWWPLGQRVSISLWCLAASPS*HPHPEL Trigger: AAGTTCTGGATGTGGATGGCATGAAGGTGAAGCTGC...AAGACACCAGAGGCTAATGCTTACCCTTTGCCCCAGTGGCCACCAGAAATGGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| 3UTR CAA 72 bp | GAGAGAGTGAAGGGAAGGAGTGACAGACGGATTTACTaGGAGTCAGGAGGACTTATAGAGGCTGAGACCCCA | + |
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Preference number: 4 (lower is better) Translates to: ERVKGRSDRRIY*ESGGLIEAETP Trigger: TGGGGTCTCAGCCTCTATAAGTCCTCCTGACTCCAAGTAAATCCGTCTGTCACTCCTTCCCTTCACTCTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| CDS-3UTR GCA 90 bp | GTACTGCAGGTGAGTTGCCACAAGGAGACAGTTACCAAAGTCTTGAGACATTTTCGTAGAAGTCTCCAGTaGTACCAAGTGAGGGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: VLQVSCHKETVTKVLRHFRRSLQ*YQVRAG Trigger: TCCGGCCCTCACTTGGTAGCACTGGAGACTTCTACG...AAAATGTCTCAAGACTTTGGTAACTGTCTCCTTGTGGCAACTCACCTGCAGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| CDS-3UTR GCA 90 bp | AGTGCAAAGACAACGAAAGAGAGAGTGAAGGGAAGGAGTGACAGACGGATTTACGCAGCTTCACCTTCATaGCATCCACATCCAGAACTT | + |
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Preference number: 4 (lower is better) Translates to: SAKTTKERVKGRSDRRIYAASPS*HPHPEL Trigger: AAGTTCTGGATGTGGATGGCATGAAGGTGAAGCTGC...GTAAATCCGTCTGTCACTCCTTCCCTTCACTCTCTCTTTCGTTGTCTTTGCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| 3UTR CAA 72 bp | CAGGTGAGTTGCCACAAGGAGACAGTTACCAAAGTCTaGAGACATTTTTGTCATAACAAAACAGGGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: QVSCHKETVTKV*RHFCHNKTGLW Trigger: CCACAGCCCTGTTTTGTTATGACAAAAATGTCTCAAGACTTTGGTAACTGTCTCCTTGTGGCAACTCACCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| CDS GCA 90 bp | CCCATTGGGCGGTGCCTCTGGGCCAGGGCGCACAGTCCTCGGATGTaGCAGACGTGGCCCATTGGTGGCGGCGGCGGCGGCGGGCAGCGT | + |
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Preference number: 5 (lower is better) Translates to: PIGRCLWARAHSPRM*QTWPIGGGGGGGQR Trigger: ACGCTGCCCGCCGCCGCCGCCGCCACCAATGGGCCACGTCTGGCACATCCGAGGACTGTGCGCCCTGGCCCAGAGGCACCGCCCAATGGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035797.16 ENSMUST00000061764.14 ENSMUST00000176533.2 |
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| CDS CCA 90 bp | AAGCAACATCGTAGAAGTCTCCAGTGCTACCAAGTGAGGGCCGGATaGACTGCGGGGGCCCATTGGGCGGTGCCTCTGGGCCAGGGCGCA | + |
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Preference number: 5 (lower is better) Translates to: KQHRRSLQCYQVRAG*TAGAHWAVPLGQGA Trigger: TGCGCCCTGGCCCAGAGGCACCGCCCAATGGGCCCCCGCAGTCCATCCGGCCCTCACTTGGTAGCACTGGAGACTTCTACGATGTTGCTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035797.16 ENSMUST00000061764.14 ENSMUST00000176533.2 |
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| CDS-3UTR CAA 90 bp | TCCTGTCTGAGCAGTGTGCTGCGTGTGGTCCCCCTCCTCACTTCTGGGAGTGCCAAAGCCAAGTCCACGTaGAGGCCAGTCCTTGCGCTG | + |
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Preference number: 5 (lower is better) Translates to: SCLSSVLRVVPLLTSGSAKAKST*RPVLAL Trigger: CAGCGCAAGGACTGGCCTCAACGTGGACTTGGCTTT...GGCACTCCCAGAAGTGAGGAGGGGGACCACACGCAGCACACTGCTCAGACAGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035797.16 |
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| CDS TCA 90 bp | CATGACCTTGAAAGCAACATCGTAGAAGTCTCCAGTGCTACCAAGTaGGGGCCGGATGGACTGCGGGGGCCCATTGGGCGGTGCCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: HDLESNIVEVSSATK*GPDGLRGPIGRCLW Trigger: CCAGAGGCACCGCCCAATGGGCCCCCGCAGTCCATCCGGCCCTCACTTGGTAGCACTGGAGACTTCTACGATGTTGCTTTCAAGGTCATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000035797.16 ENSMUST00000061764.14 ENSMUST00000176533.2 |
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| CDS-3UTR CAA 90 bp | AGAATAACAGTACTGCAGGTGAGTTGCCACAAGGAGACAGTTACCAAAGTCTTGCCCACCGGCATCATCTaGCCCCTCTCGGCCCGCGGC | + |
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Preference number: 5 (lower is better) Translates to: RITVLQVSCHKETVTKVLPTGII*PLSARG Trigger: GCCGCGGGCCGAGAGGGGCAAGATGATGCCGGTGGG...CAAGACTTTGGTAACTGTCTCCTTGTGGCAACTCACCTGCAGTACTGTTATTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061764.14 |
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| CDS CCA 72 bp | CCGGATGGACTGCGGGGGCCCATTGGGCGGTGCCTCTaGGCCAGGGCGCACAGTCCTCGGATGTGCCAGACG | + |
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Preference number: 6 (lower is better) Translates to: PDGLRGPIGRCL*ARAHSPRMCQT Trigger: CGTCTGGCACATCCGAGGACTGTGCGCCCTGGCCCAGAGGCACCGCCCAATGGGCCCCCGCAGTCCATCCGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035797.16 ENSMUST00000061764.14 ENSMUST00000176533.2 |
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| CDS TCA 72 bp | GAAAGCAACATCGTAGAAGTCTCCAGTGCTACCAAGTaGGGGCCGGATGGACTGCGGGGGCCCATTGGGCGG | + |
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Preference number: 6 (lower is better) Translates to: ESNIVEVSSATK*GPDGLRGPIGR Trigger: CCGCCCAATGGGCCCCCGCAGTCCATCCGGCCCTCACTTGGTAGCACTGGAGACTTCTACGATGTTGCTTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000035797.16 ENSMUST00000061764.14 ENSMUST00000176533.2 |
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| CDS TCA 72 bp | TCTTGGGGGTCTTCTTCCTGGGACTACGATGTGTTCTaGGATGAGGATGCTGGGGCAGATGGCTTGCATGAA | + |
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Preference number: 6 (lower is better) Translates to: SWGSSSWDYDVF*DEDAGADGLHE Trigger: TTCATGCAAGCCATCTGCCCCAGCATCCTCATCTCAGAACACATCGTAGTCCCAGGAAGAAGACCCCCAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000176533.2 |
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| CDS TCA 72 bp | AATTTCTCCCCATCTTCCCTCTTTACCACACGGTCTTaGGTAGAGTCAACCTTGTTCCCTAGCAGCATGAGC | + |
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Preference number: 6 (lower is better) Translates to: NFSPSSLFTTRS*VESTLFPSSMS Trigger: GCTCATGCTGCTAGGGAACAAGGTTGACTCTACTCAAGACCGTGTGGTAAAGAGGGAAGATGGGGAGAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035797.16 ENSMUST00000176533.2 |
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