Pregenerated sensors for RAB25 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008601Ensembl transcript IDs: ENSMUST00000008745.13, ENSMUST00000131775.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGGAGATATCTGAAAGCTaGAGGCAGGACACAGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: VLVIRDSRVGRSPAVREVEISES*RQDTGL Trigger: CAGCCCTGTGTCCTGCCTTCAGCTTTCAGATATCTC...CACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| 3UTR TCA 72 bp | CTTTATTTTCCGGCCCTCGCCTGTAAGGGGTCCAGGTaGTGGAGAGGAATATGGTGGGCAGATCACATGGTA | + |
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Preference number: 3 (lower is better) Translates to: LYFPALACKGSR*WRGIWWADHMV Trigger: TACCATGTGATCTGCCCACCATATTCCTCTCCATCACCTGGACCCCTTACAGGCGAGGGCCGGAAAATAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR TCA 90 bp | CGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTCCCAGATCTGTGCCTTaGCAGCAGCGGTGCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: RASDQGLQGREKSCSKGGPRSVP*QQRCPA Trigger: TGCTGGGCACCGCTGCTGTCAAGGCACAGATCTGGG...ACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR TCA 90 bp | CTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGGAGTCGAGGGCTaGCGTCTCCAGGAACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LRASDQGLQGREKSCSKGGGVEG*RLQEQQ Trigger: CTGCTGTTCCTGGAGACGTCAGCCCTCGACTCCACC...TCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR TCA 90 bp | GCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGGACCTCTCGGGCCTGGCTaGGGTCACTTTTGTTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: ASDQGLQGREKSCSKGGGPLGPG*GHFCSP Trigger: TGGGGAACAAAAGTGACCTCAGCCAGGCCCGAGAGG...TCCACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR GCA 90 bp | TGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGCGTGTCCCAGATCTGTaGCTTGACAGCAGCGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: CVLVIRDSRVGRSPAVRERVPDL*LDSSGA Trigger: GGCACCGCTGCTGTCAAGGCACAGATCTGGGACACG...CTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR GCA 90 bp | GCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGGAACAGCAGATTGGTCTTaGCCACGCCTGACTCGCCGA | + |
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Preference number: 4 (lower is better) Translates to: ASDQGLQGREKSCSKGGGTADWS*PRLTRR Trigger: TCGGCGAGTCAGGCGTGGGCAAGACCAATCTGCTGT...TCCACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | GCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGGAACCGGGACAGCAGATTaGTCTTGCCCACGCCTGACT | + |
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Preference number: 4 (lower is better) Translates to: ASDQGLQGREKSCSKGGGTGTAD*SCPRLT Trigger: AGTCAGGCGTGGGCAAGACCAATCTGCTGTCCCGGT...TCCACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | CGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGTGGTGCGACTGTCGTaGCTGAACTCATTGCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: RASDQGLQGREKSCSKGGVVRLS*LNSLRV Trigger: CACCCGCAATGAGTTCAGCCACGACAGTCGCACCAC...ACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | TGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGAGAACTCAACCCCGATaGTGGTGCGACTGTCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: CVLVIRDSRVGRSPAVRERTQPR*WCDCRG Trigger: GCCACGACAGTCGCACCACCATCGGGGTTGAGTTCT...CTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | ATGACCCTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTGGGACCTCTCGGGCCTaGCTGAGGTCACTTTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: MTLRASDQGLQGREKSCSGTSRA*LRSLLF Trigger: GAACAAAAGTGACCTCAGCCAGGCCCGAGAGGTCCC...ACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAGGGTCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | ATGACCCTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTGGATCCTGTCCAGCTTaGGCATTGCCCAGGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: MTLRASDQGLQGREKSCSGSCPA*ALPRVM Trigger: CATCACCCTGGGCAATGCCCAAGCTGGACAGGATCC...ACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAGGGTCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR TCA 90 bp | CGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTTGTTCCCCACGAGCATaGCAACAATCGTGGCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: RASDQGLQGREKSCSKGGCSPRA*QQSWLR Trigger: CCGAAGCCACGATTGTTGTCATGCTCGTGGGGAACA...ACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR GCA 90 bp | TGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGTGCCCAGCATTACAGTaGGGGTGGAGAACTCAACCC | + |
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Preference number: 4 (lower is better) Translates to: CVLVIRDSRVGRSPAVRECPALQ*GWRTQP Trigger: GGGTTGAGTTCTCCACCCGCACTGTAATGCTGGGCA...CTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | CTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGCATTACAGTGCGGGTaGAGAACTCAACCCCGATGG | + |
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Preference number: 4 (lower is better) Translates to: LRASDQGLQGREKSCSKGALQCG*RTQPRW Trigger: CCATCGGGGTTGAGTTCTCCACCCGCACTGTAATGC...TCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | ATGACCCTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAGGCTAGCTCAACATTaGTGGAGTCGAGGGCTGACG | + |
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Preference number: 4 (lower is better) Translates to: MTLRASDQGLQGREKSCSRLAQH*WSRGLT Trigger: CGTCAGCCCTCGACTCCACCAATGTTGAGCTAGCCT...ACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAGGGTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR GCA 90 bp | CTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGTCCGGGTGCTGTTCTaGTTCTGCTTGGACACCTTT | + |
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Preference number: 4 (lower is better) Translates to: LRASDQGLQGREKSCSKGVRVLF*FCLDTF Trigger: AAAGGTGTCCAAGCAGAAGCAGAACAGCACCCGGAC...TCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | ATGACCCTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTCTAGCTCAACATTGGTaGAGTCGAGGGCTGACGTCT | + |
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Preference number: 4 (lower is better) Translates to: MTLRASDQGLQGREKSCSLAQHW*SRGLTS Trigger: AGACGTCAGCCCTCGACTCCACCAATGTTGAGCTAG...ACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAGGGTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | TGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGCGTAGGTCTGGTGCTTaGTCAGGTCAAATACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: CVLVIRDSRVGRSPAVRERRSGA*SGQIPG Trigger: TCCTGGTATTTGACCTGACCAAGCACCAGACCTACG...CTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | CGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTATCGTGGCTTCGGCATaGTCATACAGCTCCTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: RASDQGLQGREKSCSKGGIVASA*SYSSFS Trigger: GCTAAAGGAGCTGTATGACCATGCCGAAGCCACGAT...ACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR GCA 90 bp | CTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGTGCTGTTCTGCTTCTaGTTGGACACCTTTGCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: LRASDQGLQGREKSCSKGVLFCF*LDTFAK Trigger: CTTTGCAAAGGTGTCCAAGCAGAAGCAGAACAGCAC...TCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR TCA 90 bp | TGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGTTGCAAAGATCTCTTTaGGGACAGTCTGGAAGGCTA | + |
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Preference number: 4 (lower is better) Translates to: CVLVIRDSRVGRSPAVRELQRSL*GQSGRL Trigger: TAGCCTTCCAGACTGTCCTCAAAGAGATCTTTGCAA...CTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR GCA 90 bp | GCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGGACTGCTTGGACACCTTTaGAAAGATCTCTTTGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: ASDQGLQGREKSCSKGGGLLGHL*KDLFED Trigger: GTCCTCAAAGAGATCTTTGCAAAGGTGTCCAAGCAG...TCCACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | ATGACCCTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTTCTTTGAGGACAGTCTaGAAGGCTAGCTCAACATTG | + |
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Preference number: 4 (lower is better) Translates to: MTLRASDQGLQGREKSCSSLRTV*KASSTL Trigger: CAATGTTGAGCTAGCCTTCCAGACTGTCCTCAAAGA...ACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAGGGTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CCA 90 bp | CTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGATGTTCTGCTTCTGCTTaGACACCTTTGCAAAGATCT | + |
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Preference number: 4 (lower is better) Translates to: LRASDQGLQGREKSCSKGCSASA*TPLQRS Trigger: AGATCTTTGCAAAGGTGTCCAAGCAGAAGCAGAACA...TCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS CCA 90 bp | ATGCAACAGGCCCTCTTTTCCCCAGGGCCAGGATCCTGTCCAGCTTaGGCATTGCCCAGGGTGATGGCACTGGTCCGGGTGCTGTTCTGC | + |
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Preference number: 5 (lower is better) Translates to: MQQALFSPGPGSCPA*ALPRVMALVRVLFC Trigger: GCAGAACAGCACCCGGACCAGTGCCATCACCCTGGGCAATGCCCAAGCTGGACAGGATCCTGGCCCTGGGGAAAAGAGGGCCTGTTGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CAA 90 bp | CGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGACAGCAGATTGGTCTaGCCCACGCCTGACTCGCCG | + |
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Preference number: 5 (lower is better) Translates to: RASDQGLQGREKSCSKGGDSRLV*PTPDSP Trigger: CGGCGAGTCAGGCGTGGGCAAGACCAATCTGCTGTC...ACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CAA 90 bp | CTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGATCCCAGATCTGTGCCTaGACAGCAGCGGTGCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LRASDQGLQGREKSCSKGSQICA*TAAVPS Trigger: GCTGGGCACCGCTGCTGTCAAGGCACAGATCTGGGA...TCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CAA 90 bp | CTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGATCGTGGCTGAACTCATaGCGGGTGAACCGGGACAGC | + |
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Preference number: 5 (lower is better) Translates to: LRASDQGLQGREKSCSKGSWLNS*RVNRDS Trigger: GCTGTCCCGGTTCACCCGCAATGAGTTCAGCCACGA...TCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CAA 90 bp | GTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGTGTCCAGCTTGGGCATaGCCCAGGGTGATGGCACTG | + |
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Preference number: 5 (lower is better) Translates to: VLVIRDSRVGRSPAVREVCPAWA*PRVMAL Trigger: CAGTGCCATCACCCTGGGCAATGCCCAAGCTGGACA...CACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CAA 90 bp | GCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGGTGGAAGGATCCTGTCCAGCTaGGGCATTGCCCAGGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: ASDQGLQGREKSCSKGGGRILSS*GIAQGD Trigger: ATCACCCTGGGCAATGCCCAAGCTGGACAGGATCCT...TCCACCTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS GCA 90 bp | GCTTGGGCATTGCCCAGGGTGATGGCACTGGTCCGGGTGCTGTTCTaGTTCTGCTTGGACACCTTTGCAAAGATCTCTTTGAGGACAGTC | + |
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Preference number: 5 (lower is better) Translates to: AWALPRVMALVRVLF*FCLDTFAKISLRTV Trigger: GACTGTCCTCAAAGAGATCTTTGCAAAGGTGTCCAAGCAGAAGCAGAACAGCACCCGGACCAGTGCCATCACCCTGGGCAATGCCCAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CAA 90 bp | TGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTAAGGGAGTGGCTGAGGTCACTTTaGTTCCCCACGAGCATGACA | + |
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Preference number: 5 (lower is better) Translates to: CVLVIRDSRVGRSPAVREWLRSL*FPTSMT Trigger: TGTCATGCTCGTGGGGAACAAAAGTGACCTCAGCCA...CTCCCTTACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CAA 90 bp | TGGAGAGGAATATGGTGGGCAGATCACATGGTAGGGCATGATGACCCTGCGTGCAAGGCTAGCTCAACATaGGTGGAGTCGAGGGCTGAC | + |
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Preference number: 5 (lower is better) Translates to: WRGIWWADHMVGHDDPACKASST*VESRAD Trigger: GTCAGCCCTCGACTCCACCAATGTTGAGCTAGCCTT...GCACGCAGGGTCATCATGCCCTACCATGTGATCTGCCCACCATATTCCTCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS GCA 90 bp | GCATTGCCCAGGGTGATGGCACTGGTCCGGGTGCTGTTCTGCTTCTaGTTGGACACCTTTGCAAAGATCTCTTTGAGGACAGTCTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: ALPRVMALVRVLFCF*LDTFAKISLRTVWK Trigger: CTTCCAGACTGTCCTCAAAGAGATCTTTGCAAAGGTGTCCAAGCAGAAGCAGAACAGCACCCGGACCAGTGCCATCACCCTGGGCAATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS-3UTR CAA 90 bp | ATGACCCTGCGTGCTAGTGATCAGGGACTCCAGGGTAGGGAGAAGTCCTGCAGTTTTGCAAAGATCTCTTaGAGGACAGTCTGGAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: MTLRASDQGLQGREKSCSFAKIS*RTVWKA Trigger: AGCCTTCCAGACTGTCCTCAAAGAGATCTTTGCAAA...ACTGCAGGACTTCTCCCTACCCTGGAGTCCCTGATCACTAGCACGCAGGGTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS CCA 72 bp | GCCCTCTTTTCCCCAGGGCCAGGATCCTGTCCAGCTTaGGCATTGCCCAGGGTGATGGCACTGGTCCGGGTG | + |
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Preference number: 6 (lower is better) Translates to: ALFSPGPGSCPA*ALPRVMALVRV Trigger: CACCCGGACCAGTGCCATCACCCTGGGCAATGCCCAAGCTGGACAGGATCCTGGCCCTGGGGAAAAGAGGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS CAA 72 bp | GGCCCTCTTTTCCCCAGGGCCAGGATCCTGTCCAGCTaGGGCATTGCCCAGGGTGATGGCACTGGTCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: GPLFPRARILSS*GIAQGDGTGPG Trigger: ACCCGGACCAGTGCCATCACCCTGGGCAATGCCCAAGCTGGACAGGATCCTGGCCCTGGGGAAAAGAGGGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS CAA 90 bp | CAGGCCCTCTTTTCCCCAGGGCCAGGATCCTGTCCAGCTTGGGCATaGCCCAGGGTGATGGCACTGGTCCGGGTGCTGTTCTGCTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: QALFSPGPGSCPAWA*PRVMALVRVLFCFC Trigger: GCAGAAGCAGAACAGCACCCGGACCAGTGCCATCACCCTGGGCAATGCCCAAGCTGGACAGGATCCTGGCCCTGGGGAAAAGAGGGCCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS CAA 90 bp | GATGCAACAGGCCCTCTTTTCCCCAGGGCCAGGATCCTGTCCAGCTaGGGCATTGCCCAGGGTGATGGCACTGGTCCGGGTGCTGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: DATGPLFPRARILSS*GIAQGDGTGPGAVL Trigger: CAGAACAGCACCCGGACCAGTGCCATCACCCTGGGCAATGCCCAAGCTGGACAGGATCCTGGCCCTGGGGAAAAGAGGGCCTGTTGCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS TCA 72 bp | GGCCAGGATCCTGTCCAGCTTGGGCATTGCCCAGGGTaGTGGCACTGGTCCGGGTGCTGTTCTGCTTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: GQDPVQLGHCPG*WHWSGCCSASA Trigger: AGCAGAAGCAGAACAGCACCCGGACCAGTGCCATCACCCTGGGCAATGCCCAAGCTGGACAGGATCCTGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS CAA 72 bp | TTTTCCCCAGGGCCAGGATCCTGTCCAGCTTGGGCATaGCCCAGGGTGATGGCACTGGTCCGGGTGCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: FSPGPGSCPAWA*PRVMALVRVLF Trigger: GAACAGCACCCGGACCAGTGCCATCACCCTGGGCAATGCCCAAGCTGGACAGGATCCTGGCCCTGGGGAAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS CAA 72 bp | ACCCCGATGGTGGTGCGACTGTCGTGGCTGAACTCATaGCGGGTGAACCGGGACAGCAGATTGGTCTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: TPMVVRLSWLNS*RVNRDSRLVLP Trigger: GGGCAAGACCAATCTGCTGTCCCGGTTCACCCGCAATGAGTTCAGCCACGACAGTCGCACCACCATCGGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS GCA 72 bp | GTAGGTCTGGTGCTTGGTCAGGTCAAATACCAGGAGTaGCCCCACGGCCCCACGATAGTACGCAGAGGTGAT | + |
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Preference number: 6 (lower is better) Translates to: VGLVLGQVKYQE*PHGPTIVRRGD Trigger: ATCACCTCTGCGTACTATCGTGGGGCCGTGGGGGCACTCCTGGTATTTGACCTGACCAAGCACCAGACCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000008745.13 ENSMUST00000131775.2 |
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| CDS CAA 90 bp | ACATTGGTGGAGTCGAGGGCTGACGTCTCCAGGAACAGCAGGCCATaGTTTTCAGCAAACATGCAGGCCTCCTCAGTAGGGACCTCTCGG | + |
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Preference number: 6 (lower is better) Translates to: TLVESRADVSRNSRP*FSANMQASSVGTSR Trigger: CCGAGAGGTCCCTACTGAGGAGGCCTGCATGTTTGCTGAAAACAATGGCCTGCTGTTCCTGGAGACGTCAGCCCTCGACTCCACCAATGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008745.13 ENSMUST00000131775.2 |
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| CDS CAA 72 bp | GAGTCGAGGGCTGACGTCTCCAGGAACAGCAGGCCATaGTTTTCAGCAAACATGCAGGCCTCCTCAGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: ESRADVSRNSRP*FSANMQASSVG Trigger: CCCTACTGAGGAGGCCTGCATGTTTGCTGAAAACAATGGCCTGCTGTTCCTGGAGACGTCAGCCCTCGACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000008745.13 ENSMUST00000131775.2 |
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| CDS GCA 72 bp | TTGCCCAGGGTGATGGCACTGGTCCGGGTGCTGTTCTaGTTCTGCTTGGACACCTTTGCAAAGATCTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LPRVMALVRVLF*FCLDTFAKISL Trigger: CAAAGAGATCTTTGCAAAGGTGTCCAAGCAGAAGCAGAACAGCACCCGGACCAGTGCCATCACCCTGGGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008745.13 |
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| CDS CAA 72 bp | ATCTCTTTGAGGACAGTCTGGAAGGCTAGCTCAACATaGGTGGAGTCGAGGGCTGACGTCTCCAGGAACAGC | + |
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Preference number: 6 (lower is better) Translates to: ISLRTVWKASST*VESRADVSRNS Trigger: GCTGTTCCTGGAGACGTCAGCCCTCGACTCCACCAATGTTGAGCTAGCCTTCCAGACTGTCCTCAAAGAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008745.13 ENSMUST00000131775.2 |
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| CDS GCA 72 bp | AGGGTGATGGCACTGGTCCGGGTGCTGTTCTGCTTCTaGTTGGACACCTTTGCAAAGATCTCTTTGAGGACA | + |
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Preference number: 6 (lower is better) Translates to: RVMALVRVLFCF*LDTFAKISLRT Trigger: TGTCCTCAAAGAGATCTTTGCAAAGGTGTCCAAGCAGAAGCAGAACAGCACCCGGACCAGTGCCATCACCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008745.13 ENSMUST00000131775.2 |
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| CDS CAA 90 bp | TTTGCAAAGATCTCTTTGAGGACAGTCTGGAAGGCTAGCTCAACATaGGTGGAGTCGAGGGCTGACGTCTCCAGGAACAGCAGGCCATTG | + |
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Preference number: 6 (lower is better) Translates to: FAKISLRTVWKASST*VESRADVSRNSRPL Trigger: CAATGGCCTGCTGTTCCTGGAGACGTCAGCCCTCGACTCCACCAATGTTGAGCTAGCCTTCCAGACTGTCCTCAAAGAGATCTTTGCAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000008745.13 ENSMUST00000131775.2 |
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