Pregenerated sensors for RAB24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034789Ensembl transcript IDs: ENSMUST00000035242.9, ENSMUST00000224685.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTCCTCCTCATGCCCACAGTCAGCCCAATACTTCCTCCGTTCCATaGGCCAGCACAGGCAGGTGCCACCTCTGCTGTGAGAGGCACCTG | + |
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Preference number: 1 (lower is better) Translates to: TPPHAHSQPNTSSVP*ASTGRCHLCCERHL Trigger: CAGGTGCCTCTCACAGCAGAGGTGGCACCTGCCTGTGCTGGCCCATGGAACGGAGGAAGTATTGGGCTGACTGTGGGCATGAGGAGGAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| 3UTR TCA 90 bp | GGTGCCACCTCTGCTGTGAGAGGCACCTGGAATAGCTCAGACGCTTaGCCATTCCAGCCCAGACAAGAGTCAGGTCCAGCCCCTCTGGGA | + |
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Preference number: 1 (lower is better) Translates to: GATSAVRGTWNSSDA*PFQPRQESGPAPLG Trigger: TCCCAGAGGGGCTGGACCTGACTCTTGTCTGGGCTGGAATGGTCAAGCGTCTGAGCTATTCCAGGTGCCTCTCACAGCAGAGGTGGCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| 3UTR-3UTR GCA 90 bp | AGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTCCTCATGCCCACAGTCAGCCCGCCAGCACAGGCAGGTaGCACCTCTGCTGTGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: RSLGFKSALTPPHAHSQPASTGR*HLCCER Trigger: CCTCTCACAGCAGAGGTGGCACCTGCCTGTGCTGGC...GGGCTGACTGTGGGCATGAGGAGGAGTAAGGGCTGACTTGAATCCCAGGCTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| 3UTR TCA 72 bp | TCTGCTGTGAGAGGCACCTGGAATAGCTCAGACGCTTaGCCATTCCAGCCCAGACAAGAGTCAGGTCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: SAVRGTWNSSDA*PFQPRQESGPA Trigger: GGCTGGACCTGACTCTTGTCTGGGCTGGAATGGTCAAGCGTCTGAGCTATTCCAGGTGCCTCTCACAGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| 3UTR GCA 72 bp | AAGCCTGGGATTCAAGTCAGCCCTTACTCCTCCTCATaGCCACAGTCAGCCCAATACTTCCTCCGTTCCATG | + |
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Preference number: 3 (lower is better) Translates to: KPGIQVSPYSSS*PQSAQYFLRSM Trigger: CATGGAACGGAGGAAGTATTGGGCTGACTGTGGGCATGAGGAGGAGTAAGGGCTGACTTGAATCCCAGGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR TCA 90 bp | AGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTCCTCATGCCCACAGTCAGCCCGGAAAGCAGCCACACTaGCGTAATCCTCAGCCACTT | + |
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Preference number: 4 (lower is better) Translates to: RSLGFKSALTPPHAHSQPGKQPH*RNPQPL Trigger: AAGTGGCTGAGGATTACGTCAGTGTGGCTGCTTTCC...GGGCTGACTGTGGGCATGAGGAGGAGTAAGGGCTGACTTGAATCCCAGGCTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR GCA 90 bp | TCCTCATGCCCACAGTCAGCCCAATACTTCCTCCGTTCCATGGGCCAGCACAGGGTCATAACAGACAATTaGAGCTTTAGCACCCCGGTA | + |
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Preference number: 4 (lower is better) Translates to: SSCPQSAQYFLRSMGQHRVITDN*SFSTPV Trigger: TACCGGGGTGCTAAAGCTGCAATTGTCTGTTATGAC...CCTGTGCTGGCCCATGGAACGGAGGAAGTATTGGGCTGACTGTGGGCATGAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR TCA 90 bp | CAGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTCCTCATGCCCACAGTCAGCCCAAAGAGTTGGGCTTTaGTATTATCGGCATAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: QKPGIQVSPYSSSCPQSAQRVGL*YYRHSP Trigger: AGGACTATGCCGATAATATCAAAGCCCAACTCTTTG...GGCTGACTGTGGGCATGAGGAGGAGTAAGGGCTGACTTGAATCCCAGGCTTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR TCA 90 bp | AGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTGTGCCACCTCTGCTGTaGGAGGCACCTGGAATAGCT | + |
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Preference number: 4 (lower is better) Translates to: SYLNSLDRSLGFKSALTPVPPLL*EAPGIA Trigger: AGCTATTCCAGGTGCCTCTCACAGCAGAGGTGGCAC...AGGAGTAAGGGCTGACTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS-3UTR GCA 90 bp | TTACTCCTCCTCATGCCCACAGTCAGCCCAATACTTCCTCCGTTCCATGGGCCAGTAGAAGTAAGGGTTTaGCTTCTGGCTCAAATCCAC | + |
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Preference number: 4 (lower is better) Translates to: LLLLMPTVSPILPPFHGPVEVRV*LLAQIH Trigger: GTGGATTTGAGCCAGAAGGCAAACCCTTACTTCTAC...TGGCCCATGGAACGGAGGAAGTATTGGGCTGACTGTGGGCATGAGGAGGAGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR CCA 90 bp | ACAGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTCCTCATGCCCACAGTCAGCTCCTCAGCCACTTTCTaGAAGAGTTCATCCACACTT | + |
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Preference number: 4 (lower is better) Translates to: TEAWDSSQPLLLLMPTVSSSATF*KSSSTL Trigger: AAGTGTGGATGAACTCTTCCAGAAAGTGGCTGAGGA...GCTGACTGTGGGCATGAGGAGGAGTAAGGGCTGACTTGAATCCCAGGCTTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR TCA 90 bp | CAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGTCAGCCGGAAAGCAGCCACACTaGCGTAATCCTCAGCCACTT | + |
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Preference number: 4 (lower is better) Translates to: QFRSYLNSLDRSLGFKSAGKQPH*RNPQPL Trigger: AAGTGGCTGAGGATTACGTCAGTGTGGCTGCTTTCC...GGCTGACTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035242.9 ENSMUST00000224685.2 |
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| CDS-3UTR GCA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGGCCAGCACAGGCAGGTaGCACCTCTGCTGTGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKASTGR*HLCCER Trigger: CCTCTCACAGCAGAGGTGGCACCTGCCTGTGCTGGC...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS-3UTR TCA 90 bp | AGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTCAAAGAGAGGAGAGGTaGCTGTCATCACCTGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: SYLNSLDRSLGFKSALTPQREER*LSSPGK Trigger: CTTTCCAGGTGATGACAGTCACCTCTCCTCTCTTTG...AGGAGTAAGGGCTGACTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS-3UTR GCA 90 bp | AGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTCCCGGTAATAGATTCTaGTCATGGCTTCGTAGCGCT | + |
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Preference number: 4 (lower is better) Translates to: SYLNSLDRSLGFKSALTPPGNRF*SWLRSA Trigger: AGCGCTACGAAGCCATGAGCAGAATCTATTACCGGG...AGGAGTAAGGGCTGACTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR CCA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGACTTCCTCCGTTCCATaGGCCAGCACAGGCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKTSSVP*ASTGRC Trigger: GCACCTGCCTGTGCTGGCCCATGGAACGGAGGAAGT...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS-3UTR CCA 90 bp | CAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGTCAGCCTTTGGCCTGTCTTGCTaGATGTTTCAAAGAGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: QFRSYLNSLDRSLGFKSAFGLSC*MFQRVG Trigger: CCCAACTCTTTGAAACATCCAGCAAGACAGGCCAAA...GGCTGACTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR CCA 90 bp | TTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGTCAGCCCTTAGTTCATCCACACTTTaGCCTGTCTTGCTGGATGTT | + |
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Preference number: 4 (lower is better) Translates to: FRSYLNSLDRSLGFKSALSSSTL*PVLLDV Trigger: AACATCCAGCAAGACAGGCCAAAGTGTGGATGAACT...AAGGGCTGACTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035242.9 ENSMUST00000224685.2 |
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| CDS-3UTR CCA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGGTGACTGTCATCACCTaGAAAGCAGCCACACTGACG | + |
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Preference number: 4 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKVTVIT*KAATLT Trigger: CGTCAGTGTGGCTGCTTTCCAGGTGATGACAGTCAC...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS-3UTR TCA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGAATAGCTCAGACGCTTaGCCATTCCAGCCCAGACAA | + |
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Preference number: 4 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKNSSDA*PFQPRQ Trigger: TTGTCTGGGCTGGAATGGTCAAGCGTCTGAGCTATT...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS-3UTR GCA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGGTAGAAGTAAGGGTTTaGCTTCTGGCTCAAATCCAC | + |
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Preference number: 4 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKVEVRV*LLAQIH Trigger: GTGGATTTGAGCCAGAAGGCAAACCCTTACTTCTAC...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035242.9 ENSMUST00000224685.2 |
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| CDS-3UTR CCA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGAGTTCATCCACACTTTaGCCTGTCTTGCTGGATGTT | + |
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Preference number: 4 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKSSSTL*PVLLDV Trigger: AACATCCAGCAAGACAGGCCAAAGTGTGGATGAACT...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035242.9 ENSMUST00000224685.2 |
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| CDS-3UTR CCA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGTCCTCAGCCACTTTCTaGAAGAGTTCATCCACACTT | + |
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Preference number: 4 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKSSATF*KSSSTL Trigger: AAGTGTGGATGAACTCTTCCAGAAAGTGGCTGAGGA...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035242.9 ENSMUST00000224685.2 |
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| CDS-3UTR GCA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGCACTTTGGCCTGTCTTaGTGGATGTTTCAAAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKHFGLS*WMFQRV Trigger: AACTCTTTGAAACATCCAGCAAGACAGGCCAAAGTG...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS CCA 90 bp | CCCAAATGCCCAGAGTCACCGTCCGGTCTCCAACGCACATCACCTTaGCCACGAAAGCAGCCCCGATGGTGTTCTGATAGGGCCCCACCA | + |
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Preference number: 5 (lower is better) Translates to: PKCPESPSGLQRTSP*PRKQPRWCSDRAPP Trigger: TGGTGGGGCCCTATCAGAACACCATCGGGGCTGCTTTCGTGGCCAAGGTGATGTGCGTTGGAGACCGGACGGTGACTCTGGGCATTTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR CAA 90 bp | CAGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTCCTCATGCCCACAGTCAGCCTCCACCAGGCTCGTCTaGCCCACGTATTCCTTGCCC | + |
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Preference number: 5 (lower is better) Translates to: QKPGIQVSPYSSSCPQSASTRLV*PTYSLP Trigger: GGGCAAGGAATACGTGGGCAAGACGAGCCTGGTGGA...GGCTGACTGTGGGCATGAGGAGGAGTAAGGGCTGACTTGAATCCCAGGCTTCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR CAA 90 bp | CCTCCTCATGCCCACAGTCAGCCCAATACTTCCTCCGTTCCATGGGCCAGCACATTGCCCACGTATTCCTaGCCCAGCATAACCACCTTA | + |
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Preference number: 5 (lower is better) Translates to: PPHAHSQPNTSSVPWASTLPTYS*PSITTL Trigger: TAAGGTGGTTATGCTGGGCAAGGAATACGTGGGCAA...TGTGCTGGCCCATGGAACGGAGGAAGTATTGGGCTGACTGTGGGCATGAGGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTCCTCATGCCCACAGTCAGCGAGTTCATCCACACTTaGGCCTGTCTTGCTGGATGT | + |
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Preference number: 5 (lower is better) Translates to: TEAWDSSQPLLLLMPTVSEFIHT*ACLAGC Trigger: ACATCCAGCAAGACAGGCCAAAGTGTGGATGAACTC...GCTGACTGTGGGCATGAGGAGGAGTAAGGGCTGACTTGAATCCCAGGCTTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR CAA 90 bp | ACAGAAGCCTGGGATTCAAGTCAGCCCTTACTCCTCCTCATGCCCACAGTCAGCGGATGTTTCAAAGAGTaGGGCTTTGATATTATCGGC | + |
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Preference number: 5 (lower is better) Translates to: TEAWDSSQPLLLLMPTVSGCFKE*GFDIIG Trigger: GCCGATAATATCAAAGCCCAACTCTTTGAAACATCC...GCTGACTGTGGGCATGAGGAGGAGTAAGGGCTGACTTGAATCCCAGGCTTCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS TCA 90 bp | AGCCCCTCTGGGAATTCATCTAATTCCACTGGGCCAGATGAGTGGTaGCTCAGTGATGACAACAGCTGTAGAAGTAAGGGTTTGCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SPSGNSSNSTGPDEW*LSDDNSCRSKGLPS Trigger: AGAAGGCAAACCCTTACTTCTACAGCTGTTGTCATCACTGAGTCACCACTCATCTGGCCCAGTGGAATTAGATGAATTCCCAGAGGGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS-3UTR CAA 90 bp | CAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGTCAGCCTCCTTAACCCAGAACTaGGCTCTCTCAAAGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: QFRSYLNSLDRSLGFKSASLTQN*ALSKLL Trigger: CAGCAGCTTTGAGAGAGCCAAGTTCTGGGTTAAGGA...GGCTGACTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS-3UTR CAA 90 bp | CAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGTCAGCCGAGTTCATCCACACTTaGGCCTGTCTTGCTGGATGT | + |
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Preference number: 5 (lower is better) Translates to: QFRSYLNSLDRSLGFKSAEFIHT*ACLAGC Trigger: ACATCCAGCAAGACAGGCCAAAGTGTGGATGAACTC...GGCTGACTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035242.9 ENSMUST00000224685.2 |
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| CDS GCA 90 bp | ATGAGTGGTGACTCAGTGATGACAACAGCTGTAGAAGTAAGGGTTTaGCTTCTGGCTCAAATCCACACCTTTGTCCTCTGTCAAAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: MSGDSVMTTAVEVRV*LLAQIHTFVLCQRE Trigger: CTCTCTTTGACAGAGGACAAAGGTGTGGATTTGAGCCAGAAGGCAAACCCTTACTTCTACAGCTGTTGTCATCACTGAGTCACCACTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS-3UTR CAA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGCTCAAATCCACACCTTaGTCCTCTGTCAAAGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKLKSTP*SSVKER Trigger: CCTCTCTTTGACAGAGGACAAAGGTGTGGATTTGAG...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS-3UTR CAA 90 bp | TATTTACAGTTCAGAAGCTACTTAAATAGTCTGGACAGAAGCCTGGGATTCAAGACACTTTGGCCTGTCTaGCTGGATGTTTCAAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: YLQFRSYLNSLDRSLGFKTLWPV*LDVSKS Trigger: ACTCTTTGAAACATCCAGCAAGACAGGCCAAAGTGT...CTTGAATCCCAGGCTTCTGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS CCA 72 bp | CAACGCACATCACCTTGGCCACGAAAGCAGCCCCGATaGTGTTCTGATAGGGCCCCACCAAGAAGCGGTCGT | + |
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Preference number: 6 (lower is better) Translates to: QRTSPWPRKQPR*CSDRAPPRSGR Trigger: ACGACCGCTTCTTGGTGGGGCCCTATCAGAACACCATCGGGGCTGCTTTCGTGGCCAAGGTGATGTGCGTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS CCA 72 bp | CCAGAGTCACCGTCCGGTCTCCAACGCACATCACCTTaGCCACGAAAGCAGCCCCGATGGTGTTCTGATAGG | + |
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Preference number: 6 (lower is better) Translates to: PESPSGLQRTSP*PRKQPRWCSDR Trigger: CCTATCAGAACACCATCGGGGCTGCTTTCGTGGCCAAGGTGATGTGCGTTGGAGACCGGACGGTGACTCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS CAA 90 bp | CCCACCAAGAAGCGGTCGTGCACGTATCGTTCCACCAGGCTCGTCTaGCCCACGTATTCCTTGCCCAGCATAACCACCTTAACGTCCACG | + |
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Preference number: 6 (lower is better) Translates to: PTKKRSCTYRSTRLV*PTYSLPSITTLTST Trigger: CGTGGACGTTAAGGTGGTTATGCTGGGCAAGGAATACGTGGGCAAGACGAGCCTGGTGGAACGATACGTGCACGACCGCTTCTTGGTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS CAA 72 bp | AAGCGGTCGTGCACGTATCGTTCCACCAGGCTCGTCTaGCCCACGTATTCCTTGCCCAGCATAACCACCTTA | + |
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Preference number: 6 (lower is better) Translates to: KRSCTYRSTRLV*PTYSLPSITTL Trigger: TAAGGTGGTTATGCTGGGCAAGGAATACGTGGGCAAGACGAGCCTGGTGGAACGATACGTGCACGACCGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS GCA 72 bp | GACTCAGTGATGACAACAGCTGTAGAAGTAAGGGTTTaGCTTCTGGCTCAAATCCACACCTTTGTCCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: DSVMTTAVEVRV*LLAQIHTFVLC Trigger: ACAGAGGACAAAGGTGTGGATTTGAGCCAGAAGGCAAACCCTTACTTCTACAGCTGTTGTCATCACTGAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224685.2 |
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| CDS GCA 72 bp | AAAGCTGCTGCTGTCAGTGAGGTCATAACAGACAATTaGAGCTTTAGCACCCCGGTAATAGATTCTGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: KAAAVSEVITDN*SFSTPVIDSAH Trigger: ATGAGCAGAATCTATTACCGGGGTGCTAAAGCTGCAATTGTCTGTTATGACCTCACTGACAGCAGCAGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS CAA 90 bp | GAGTTCATCCACACTTTGGCCTGTCTTGCTGGATGTTTCAAAGAGTaGGGCTTTGATATTATCGGCATAGTCCTGAACATCATGGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: EFIHTLACLAGCFKE*GFDIIGIVLNIMEV Trigger: GACTTCCATGATGTTCAGGACTATGCCGATAATATCAAAGCCCAACTCTTTGAAACATCCAGCAAGACAGGCCAAAGTGTGGATGAACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS TCA 72 bp | GGCCTGTCTTGCTGGATGTTTCAAAGAGTTGGGCTTTaGTATTATCGGCATAGTCCTGAACATCATGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: GLSCWMFQRVGL*YYRHSPEHHGS Trigger: ACTTCCATGATGTTCAGGACTATGCCGATAATATCAAAGCCCAACTCTTTGAAACATCCAGCAAGACAGGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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| CDS CAA 72 bp | CACACTTTGGCCTGTCTTGCTGGATGTTTCAAAGAGTaGGGCTTTGATATTATCGGCATAGTCCTGAACATC | + |
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Preference number: 6 (lower is better) Translates to: HTLACLAGCFKE*GFDIIGIVLNI Trigger: GATGTTCAGGACTATGCCGATAATATCAAAGCCCAACTCTTTGAAACATCCAGCAAGACAGGCCAAAGTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035242.9 |
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