Pregenerated sensors for RAB21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020132Ensembl transcript IDs: ENSMUST00000020343.9, ENSMUST00000218831.2
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCTGGAAGCACTCGCTCGGTGTACCTTCAGCAATGCTTACTAACTaGGTTTATATTCTACTTCCTAGAAGAAGGAAATCCAGGGACCGT | + |
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Preference number: 1 (lower is better) Translates to: LWKHSLGVPSAMLTN*VYILLPRRRKSRDR Trigger: ACGGTCCCTGGATTTCCTTCTTCTAGGAAGTAGAATATAAACGCAGTTAGTAAGCATTGCTGAAGGTACACCGAGCGAGTGCTTCCAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CCA 90 bp | GGGCTCAGAGAAGACAAGGCTAAGTTCAGTTCCTGTTATTTAGATTaGAAGGTGGAAGCCATTGACCTTCCAGCCTCTTTGGGAAGGTTT | + |
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Preference number: 1 (lower is better) Translates to: GLREDKAKFSSCYLD*KVEAIDLPASLGRF Trigger: AAACCTTCCCAAAGAGGCTGGAAGGTCAATGGCTTCCACCTTCCAATCTAAATAACAGGAACTGAACTTAGCCTTGTCTTCTCTGAGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CCA 90 bp | AGGACAAAATGGAACTTGCATAAACACTTAGTCATCAGTACGCTCTaGAAGTTACAAACCACCTCGTTCGCAAATTCTAATCCGTATCCG | + |
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Preference number: 1 (lower is better) Translates to: RTKWNLHKHLVISTL*KLQTTSFANSNPYP Trigger: CGGATACGGATTAGAATTTGCGAACGAGGTGGTTTGTAACTTCCAGAGCGTACTGATGACTAAGTGTTTATGCAAGTTCCATTTTGTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| 3UTR GCA 90 bp | GCCTTAAAACCTTCCATGCTTCATAGCACAGCAGGTACACCTGATTaGTTATTTTTGTTATTGAATCAGCATAGATCACAGAGAGAGACA | + |
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Preference number: 1 (lower is better) Translates to: ALKPSMLHSTAGTPD*LFLLLNQHRSQRET Trigger: TGTCTCTCTCTGTGATCTATGCTGATTCAATAACAAAAATAAGCAATCAGGTGTACCTGCTGTGCTATGAAGCATGGAAGGTTTTAAGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR TCA 90 bp | TTCTTAGGAGACACTACAAACACAACAGGCATGTATTTCATAACATaGTACTCGTTTCTTTTCAGATCAGTTTACCCCCAAACTGTTGCA | + |
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Preference number: 1 (lower is better) Translates to: FLGDTTNTTGMYFIT*YSFLFRSVYPQTVA Trigger: TGCAACAGTTTGGGGGTAAACTGATCTGAAAAGAAACGAGTATCATGTTATGAAATACATGCCTGTTGTGTTTGTAGTGTCTCCTAAGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CCA 90 bp | AAGCGGCACTCAAATTCTTATAAGGTAACCATTCTAAAACAACACTaGCAGAAGGAAACTTGTTTAATAACAATAAAAAGGCAAACGCTG | + |
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Preference number: 1 (lower is better) Translates to: KRHSNSYKVTILKQH*QKETCLITIKRQTL Trigger: CAGCGTTTGCCTTTTTATTGTTATTAAACAAGTTTCCTTCTGCCAGTGTTGTTTTAGAATGGTTACCTTATAAGAATTTGAGTGCCGCTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR GCA 90 bp | GTCCCTCAGTCTGCCTCGGCTTTGTCTTCCCTTTTATGTGCCCGCAGGGGACTGCCAGCAATCATTACCTaGGACTACACAGCAGAGGAT | + |
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Preference number: 2 (lower is better) Translates to: VPQSASALSSLLCARRGLPAIIT*DYTAED Trigger: ATCCTCTGCTGTGTAGTCGCAGGTAATGATTGCTGG...CAGTCCCCTGCGGGCACATAAAAGGGAAGACAAAGCCGAGGCAGACTGAGGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR CCA 90 bp | GGGACTGGTCCTGGCCAGTTTCCTTTCACCTCATTTGCCTTAAAACCTTCCATGTCCTCTGGAGTGCTCTaGAAGCACTCGCTCGGTGTA | + |
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Preference number: 2 (lower is better) Translates to: GTGPGQFPFTSFALKPSMSSGVL*KHSLGV Trigger: TACACCGAGCGAGTGCTTCCAGAGCACTCCAGAGGA...CATGGAAGGTTTTAAGGCAAATGAGGTGAAAGGAAACTGGCCAGGACCAGTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR TCA 90 bp | GTAGCATGTGTGGTCCATACCACCAAACATGTTACTCTGTTACAGGTGTTGATGAGGGGAAGGGGAAGGTaGCAGCAGCCGGTAAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: VACVVHTTKHVTLLQVLMRGRGR*QQPVSK Trigger: CTTACTTACCGGCTGCTGTCACCTTCCCCTTCCCCT...CATCAACACCTGTAACAGAGTAACATGTTTGGTGGTATGGACCACACATGCTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 90 bp | TCTGACCATTTCGAGGCACACAGCACAGAGGTCAGCAGTTTGCATTaGGCAAGGCCAATAAGTAAACAAGTAAATCTACAGGGAGGGCTC | + |
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Preference number: 2 (lower is better) Translates to: SDHFEAHSTEVSSLH*ARPISKQVNLQGGL Trigger: GAGCCCTCCCTGTAGATTTACTTGTTTACTTATTGGCCTTGCCAAATGCAAACTGCTGACCTCTGTGCTGTGTGCCTCGAAATGGTCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR GCA 90 bp | AAACTGGCTTTAAGTGATGGGACAGGTATATACACATGTGGAGAGTCCCGCAGTACTCACACTTTCTGCTaGCCCTTAAGCCTCTGCATG | + |
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Preference number: 2 (lower is better) Translates to: KLALSDGTGIYTCGESRSTHTFC*PLSLCM Trigger: CATGCAGAGGCTTAAGGGGCAGCAGAAAGTGTGAGT...ACTGCGGGACTCTCCACATGTGTATATACCTGTCCCATCACTTAAAGCCAGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR GCA 90 bp | AAGGGAAGGGGTGGTGAGCGCTATAACAGAGTCAAAAGCTTAGGTGTTATCACCACAGTTAGGGGCCTGTaGAAACCCTGCAAAAATAGA | + |
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Preference number: 2 (lower is better) Translates to: KGRGGERYNRVKSLGVITTVRGL*KPCKNR Trigger: TCTATTTTTGCAGGGTTTGCACAGGCCCCTAACTGT...GGTGATAACACCTAAGCTTTTGACTCTGTTATAGCGCTCACCACCCCTTCCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 90 bp | TTCCACTCTGACCATTTCGAGGCACACAGCACAGAGGTCAGCAGTTaGCATTTGGCAAGGCCAATAAGTAAACAAGTAAATCTACAGGGA | + |
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Preference number: 2 (lower is better) Translates to: FHSDHFEAHSTEVSS*HLARPISKQVNLQG Trigger: TCCCTGTAGATTTACTTGTTTACTTATTGGCCTTGCCAAATGCAAACTGCTGACCTCTGTGCTGTGTGCCTCGAAATGGTCAGAGTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR TCA 90 bp | GGGACTGGTCCTGGCCAGTTTCCTTTCACCTCATTTGCCTTAAAACCTTCCATGACTCCATTGGTAAAATaGTGTGACTTGGAATATGGC | + |
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Preference number: 2 (lower is better) Translates to: GTGPGQFPFTSFALKPSMTPLVK*CDLEYG Trigger: GCCATATTCCAAGTCACATCATTTTACCAATGGAGT...CATGGAAGGTTTTAAGGCAAATGAGGTGAAAGGAAACTGGCCAGGACCAGTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR TCA 90 bp | TTCTTCAGAAGAGAAAGGCCATCAAATCCAAGACATAAATGTAGCATGTGTGGTGAAGGTGGAAGCCATTaGCCTTCCAGCCTCTTTGGG | + |
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Preference number: 2 (lower is better) Translates to: FFRRERPSNPRHKCSMCGEGGSH*PSSLFG Trigger: CCCAAAGAGGCTGGAAGGTCAATGGCTTCCACCTTC...ACCACACATGCTACATTTATGTCTTGGATTTGATGGCCTTTCTCTTCTGAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR CCA 90 bp | GTAGCATGTGTGGTCCATACCACCAAACATGTTACTCTGTTACAGGTGTTGATGACAGAGCCCATCTCCTaGAAAGGCCTACAGAAAACT | + |
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Preference number: 2 (lower is better) Translates to: VACVVHTTKHVTLLQVLMTEPIS*KGLQKT Trigger: AGTTTTCTGTAGGCCTTTCCAGGAGATGGGCTCTGT...CATCAACACCTGTAACAGAGTAACATGTTTGGTGGTATGGACCACACATGCTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR TCA 90 bp | GGGACTGGTCCTGGCCAGTTTCCTTTCACCTCATTTGCCTTAAAACCTTCCATGCACAGCAGGTACACCTaGTTGCTTATTTTTGTTATT | + |
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Preference number: 2 (lower is better) Translates to: GTGPGQFPFTSFALKPSMHSRYT*LLIFVI Trigger: AATAACAAAAATAAGCAATCAGGTGTACCTGCTGTG...CATGGAAGGTTTTAAGGCAAATGAGGTGAAAGGAAACTGGCCAGGACCAGTCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR TCA 90 bp | TTCTTCAGAAGAGAAAGGCCATCAAATCCAAGACATAAATGTAGCATGTGTGGTACTGCTCACTACTGCTaGCAGCCTTTCCGAGACAAT | + |
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Preference number: 2 (lower is better) Translates to: FFRRERPSNPRHKCSMCGTAHYC*QPFRDN Trigger: ATTGTCTCGGAAAGGCTGTCAGCAGTAGTGAGCAGT...ACCACACATGCTACATTTATGTCTTGGATTTGATGGCCTTTCTCTTCTGAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR CCA 90 bp | AAACTGGCTTTAAGTGATGGGACAGGTATATACACATGTGGAGAGTCCCGCAGTTGCAGAAATAAAACTTaGCAAGCGGCACTCAAATTC | + |
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Preference number: 2 (lower is better) Translates to: KLALSDGTGIYTCGESRSCRNKT*QAALKF Trigger: GAATTTGAGTGCCGCTTGCCAAGTTTTATTTCTGCA...ACTGCGGGACTCTCCACATGTGTATATACCTGTCCCATCACTTAAAGCCAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 90 bp | CCTTCCATGCTTCATAGCACAGCAGGTACACCTGATTGCTTATTTTaGTTATTGAATCAGCATAGATCACAGAGAGAGACAGACAGACAG | + |
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Preference number: 2 (lower is better) Translates to: PSMLHSTAGTPDCLF*LLNQHRSQRETDRQ Trigger: CTGTCTGTCTGTCTCTCTCTGTGATCTATGCTGATTCAATAACAAAAATAAGCAATCAGGTGTACCTGCTGTGCTATGAAGCATGGAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 90 bp | GCATGTGTGGTCCATACCACCAAACATGTTACTCTGTTACAGGTGTaGATGAACAATAGCAACATTGTAGATTATGCCGAATCCAAGTAC | + |
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Preference number: 2 (lower is better) Translates to: ACVVHTTKHVTLLQV*MNNSNIVDYAESKY Trigger: GTACTTGGATTCGGCATAATCTACAATGTTGCTATTGTTCATCAACACCTGTAACAGAGTAACATGTTTGGTGGTATGGACCACACATGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR TCA 90 bp | TCAGCAATGCTTACTAACTGCGTTTATATTCTACTTCCTAGAAGAAGGAAATCCAGTCAGGTAAGTCTGTaGACACGTAAGTGCGCACTT | + |
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Preference number: 2 (lower is better) Translates to: SAMLTNCVYILLPRRRKSSQVSL*TRKCAL Trigger: AAGTGCGCACTTACGTGTTCACAGACTTACCTGACT...GGATTTCCTTCTTCTAGGAAGTAGAATATAAACGCAGTTAGTAAGCATTGCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR CCA 90 bp | TTCTTCAGAAGAGAAAGGCCATCAAATCCAAGACATAAATGTAGCATGTGTGGTAAAATGCCAATTCTCTaGTCACAAACTCCACTAAGT | + |
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Preference number: 2 (lower is better) Translates to: FFRRERPSNPRHKCSMCGKMPIL*SQTPLS Trigger: ACTTAGTGGAGTTTGTGACCAGAGAATTGGCATTTT...ACCACACATGCTACATTTATGTCTTGGATTTGATGGCCTTTCTCTTCTGAAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR GCA 72 bp | AGGAAGACAGTACCAGGAGAACCCTGTCCCTCAGTCTaGCTCGGCTTTGTCTTCCCTTTTATGTGCCCGCAG | + |
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Preference number: 3 (lower is better) Translates to: RKTVPGEPCPSV*LGFVFPFMCPQ Trigger: CTGCGGGCACATAAAAGGGAAGACAAAGCCGAGGCAGACTGAGGGACAGGGTTCTCCTGGTACTGTCTTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CCA 72 bp | CGTACATCACCACTCATGCTCTGCATAAAGACGCCTTaGCCAGTGGCTACTACAGGAGCCCTCTTCTCAGGC | + |
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Preference number: 3 (lower is better) Translates to: RTSPLMLCIKTP*PVATTGALFSG Trigger: GCCTGAGAAGAGGGCTCCTGTAGTAGCCACTGGCCAAGGCGTCTTTATGCAGAGCATGAGTGGTGATGTACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CCA 72 bp | CTTCCAGCCTCTTTGGGAAGGTTTAAGCGACTCCTCTaGAGTGCTCTGGAAGCACTCGCTCGGTGTACCTTC | + |
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Preference number: 3 (lower is better) Translates to: LPASLGRFKRLL*SALEALARCTF Trigger: GAAGGTACACCGAGCGAGTGCTTCCAGAGCACTCCAGAGGAGTCGCTTAAACCTTCCCAAAGAGGCTGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CCA 72 bp | TCACACTTTCTGCTGCCCCTTAAGCCTCTGCATGGATaGACACCAACTTCCCCAGAAACCCAGGCTGGTACA | + |
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Preference number: 3 (lower is better) Translates to: SHFLLPLKPLHG*TPTSPETQAGT Trigger: TGTACCAGCCTGGGTTTCTGGGGAAGTTGGTGTCCATCCATGCAGAGGCTTAAGGGGCAGCAGAAAGTGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR GCA 72 bp | CTGACAAGCAATAACCCACAAGGGACCCAAGAATGCTaGCTTGGGAACGTACATCACCACTCATGCTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: LTSNNPQGTQEC*LGNVHHHSCSA Trigger: TGCAGAGCATGAGTGGTGATGTACGTTCCCAAGGCAGCATTCTTGGGTCCCTTGTGGGTTATTGCTTGTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR GCA 72 bp | GTAGGAATACATTCTCCAGCGACTCACACTTTCTGCTaGCCCTTAAGCCTCTGCATGGATGGACACCAACTT | + |
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Preference number: 3 (lower is better) Translates to: VGIHSPATHTFC*PLSLCMDGHQL Trigger: AAGTTGGTGTCCATCCATGCAGAGGCTTAAGGGGCAGCAGAAAGTGTGAGTCGCTGGAGAATGTATTCCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR CAA 90 bp | AAACTGGCTTTAAGTGATGGGACAGGTATATACACATGTGGAGAGTCCCGCAGTCAGTCTGCCTCGGCTTaGTCTTCCCTTTTATGTGCC | + |
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Preference number: 3 (lower is better) Translates to: KLALSDGTGIYTCGESRSQSASA*SSLLCA Trigger: GGCACATAAAAGGGAAGACAAAGCCGAGGCAGACTG...ACTGCGGGACTCTCCACATGTGTATATACCTGTCCCATCACTTAAAGCCAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR TCA 72 bp | ACAGAGCCCATCTCCTGGAAAGGCCTACAGAAAACTTaGGTCGTTGCAGAAATAAAACTTGGCAAGCGGCAC | + |
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Preference number: 3 (lower is better) Translates to: TEPISWKGLQKT*VVAEIKLGKRH Trigger: GTGCCGCTTGCCAAGTTTTATTTCTGCAACGACTCAAGTTTTCTGTAGGCCTTTCCAGGAGATGGGCTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR GCA 72 bp | TTTCTGACAAGCAATAACCCACAAGGGACCCAAGAATaGTGCCTTGGGAACGTACATCACCACTCATGCTCT | + |
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Preference number: 3 (lower is better) Translates to: FLTSNNPQGTQE*CLGNVHHHSCS Trigger: AGAGCATGAGTGGTGATGTACGTTCCCAAGGCAGCATTCTTGGGTCCCTTGTGGGTTATTGCTTGTCAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR-3UTR CAA 90 bp | AAACTGGCTTTAAGTGATGGGACAGGTATATACACATGTGGAGAGTCCCGCAGTATGGCAGTCTTCATGTaGAGGGCAATGATCCACAGT | + |
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Preference number: 3 (lower is better) Translates to: KLALSDGTGIYTCGESRSMAVFM*RAMIHS Trigger: ACTGTGGATCATTGCCCTCAACATGAAGACTGCCAT...ACTGCGGGACTCTCCACATGTGTATATACCTGTCCCATCACTTAAAGCCAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR TCA 72 bp | ATCTACAACAGTAGGATTGGCAGCAGTCTTTACTCCTaGAAAGGCCAGAAGGTAGGAATACATTCTCCAGCG | + |
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Preference number: 3 (lower is better) Translates to: IYNSRIGSSLYS*KGQKVGIHSPA Trigger: CGCTGGAGAATGTATTCCTACCTTCTGGCCTTTTCAGGAGTAAAGACTGCTGCCAATCCTACTGTTGTAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR GCA 72 bp | CATCTCCTGGAAAGGCCTACAGAAAACTTGAGTCGTTaGAGAAATAAAACTTGGCAAGCGGCACTCAAATTC | + |
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Preference number: 3 (lower is better) Translates to: HLLERPTENLSR*RNKTWQAALKF Trigger: GAATTTGAGTGCCGCTTGCCAAGTTTTATTTCTGCAACGACTCAAGTTTTCTGTAGGCCTTTCCAGGAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR GCA 72 bp | TGCTCTGGAAGCACTCGCTCGGTGTACCTTCAGCAATaGTTACTAACTGCGTTTATATTCTACTTCCTAGAA | + |
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Preference number: 3 (lower is better) Translates to: CSGSTRSVYLQQ*LLTAFIFYFLE Trigger: TTCTAGGAAGTAGAATATAAACGCAGTTAGTAAGCATTGCTGAAGGTACACCGAGCGAGTGCTTCCAGAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CCA 72 bp | TGGAACTTGCATAAACACTTAGTCATCAGTACGCTCTaGAAGTTACAAACCACCTCGTTCGCAAATTCTAAT | + |
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Preference number: 3 (lower is better) Translates to: WNLHKHLVISTL*KLQTTSFANSN Trigger: ATTAGAATTTGCGAACGAGGTGGTTTGTAACTTCCAGAGCGTACTGATGACTAAGTGTTTATGCAAGTTCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| 3UTR-3UTR CAA 90 bp | TTCTTCAGAAGAGAAAGGCCATCAAATCCAAGACATAAATGTAGCATGTGTGGTACTCTGTTACAGGTGTaGATGAACAATAGCAACATT | + |
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Preference number: 3 (lower is better) Translates to: FFRRERPSNPRHKCSMCGTLLQV*MNNSNI Trigger: AATGTTGCTATTGTTCATCAACACCTGTAACAGAGT...ACCACACATGCTACATTTATGTCTTGGATTTGATGGCCTTTCTCTTCTGAAGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR TCA 90 bp | CCGACCTGCGCAGCCTCCACCGGCAACTGGGGACTTTTCCGGGTCCTCTCCCTCGCAGGGAAGGGGGTTTaGCAGGCCAGAGGCAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: PTCAASTGNWGLFRVLSLAGKGV*QARGRG Trigger: TCCTCTGCCTCTGGCCTGTCAAACCCCCTTCCCTGC...GAGGGAGAGGACCCGGAAAAGTCCCCAGTTGCCGGTGGAGGCTGCGCAGGTCGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| CDS-3UTR TCA 90 bp | GTGGCTACTACAGGAGCCCTCTTCTCAGGCCACAGAGCCCATCTCCTGGAAAGGCGAGCAGCACCACCTTaGAGGAGTAGGCTCGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: VATTGALFSGHRAHLLERRAAPP*RSRLGP Trigger: CGGGCCGAGCCTACTCCTTCAAGGTGGTGCTGCTCG...CCTTTCCAGGAGATGGGCTCTGTGGCCTGAGAAGAGGGCTCCTGTAGTAGCCAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR TCA 90 bp | GTGGCTACTACAGGAGCCCTCTTCTCAGGCCACAGAGCCCATCTCCTGGAAAGGGAGGCTCGTCGTCGATaGTCTGCACACCTCGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: VATTGALFSGHRAHLLEREARRR*SAHLAL Trigger: CAAGGCGAGGTGTGCAGATCATCGACGACGAGCCTC...CCTTTCCAGGAGATGGGCTCTGTGGCCTGAGAAGAGGGCTCCTGTAGTAGCCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | GTGGCTACTACAGGAGCCCTCTTCTCAGGCCACAGAGCCCATCTCCTGGAAAGGTCGTCGTCGATGATCTaGACACCTCGCCTTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: VATTGALFSGHRAHLLERSSSMI*TPRLAA Trigger: GGCTGCAAGGCGAGGTGTGCAGATCATCGACGACGA...CCTTTCCAGGAGATGGGCTCTGTGGCCTGAGAAGAGGGCTCCTGTAGTAGCCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | TCTGGAAGTTACAAACCACCTCGTTCGCAAATTCTAATCCGTATCCGAGTTCCTCGGCTCCCCGGGGTCTaGACCTGCAGGGTGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: SGSYKPPRSQILIRIRVPRLPGV*TCRVVM Trigger: CATCACCACCCTGCAGGTGCAGACCCCGGGGAGCCG...AGGAACTCGGATACGGATTAGAATTTGCGAACGAGGTGGTTTGTAACTTCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| CDS-3UTR CCA 90 bp | GTCCCTCAGTCTGCCTCGGCTTTGTCTTCCCTTTTATGTGCCCGCAGGGGACTGGCTCTCTCATCCACCTaGGCTGTCTCTATCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: VPQSASALSSLLCARRGLALSST*AVSIIL Trigger: AAGAATGATAGAGACAGCCCAGGTGGATGAGAGAGC...CAGTCCCCTGCGGGCACATAAAAGGGAAGACAAAGCCGAGGCAGACTGAGGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 72 bp | ACGTACATCACCACTCATGCTCTGCATAAAGACGCCTaGGCCAGTGGCTACTACAGGAGCCCTCTTCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: TYITTHALHKDA*ASGYYRSPLLR Trigger: CCTGAGAAGAGGGCTCCTGTAGTAGCCACTGGCCAAGGCGTCTTTATGCAGAGCATGAGTGGTGATGTACGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 72 bp | GATTGGAAGGTGGAAGCCATTGACCTTCCAGCCTCTTaGGGAAGGTTTAAGCGACTCCTCTGGAGTGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: DWKVEAIDLPAS*GRFKRLLWSAL Trigger: CAGAGCACTCCAGAGGAGTCGCTTAAACCTTCCCAAAGAGGCTGGAAGGTCAATGGCTTCCACCTTCCAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR TCA 90 bp | ATCAGTACGCTCTGGAAGTTACAAACCACCTCGTTCGCAAATTCTAATCCGTATCGAGCAGCACCACCTTaGAGGAGTAGGCTCGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: ISTLWKLQTTSFANSNPYRAAPP*RSRLGP Trigger: CGGGCCGAGCCTACTCCTTCAAGGTGGTGCTGCTCG...ATACGGATTAGAATTTGCGAACGAGGTGGTTTGTAACTTCCAGAGCGTACTGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| CDS-3UTR TCA 90 bp | AAGGGAAGGGGTGGTGAGCGCTATAACAGAGTCAAAAGCTTAGGTGTTATCACCCTTGCAGCCCCGGCTTaGCTCGAGCCATTGCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: KGRGGERYNRVKSLGVITLAAPA*LEPLPF Trigger: AAAAGGCAATGGCTCGAGTCAAGCCGGGGCTGCAAG...GGTGATAACACCTAAGCTTTTGACTCTGTTATAGCGCTCACCACCCCTTCCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | CTTCTCAGGCCACAGAGCCCATCTCCTGGAAAGGCCTACAGAAAACTTGAGTCGGAATCTCTCCTGACCTaGTGTGTCCCATATGGCAAG | + |
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Preference number: 4 (lower is better) Translates to: LLRPQSPSPGKAYRKLESESLLT*CVPYGK Trigger: CTTGCCATATGGGACACAGCAGGTCAGGAGAGATTC...CGACTCAAGTTTTCTGTAGGCCTTTCCAGGAGATGGGCTCTGTGGCCTGAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | AGCAGGACAAAATGGAACTTGCATAAACACTTAGTCATCAGTACGCTCTGGAAGCCCGGGGTCTGCACCTaGAGGGTGGTGATGTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: SRTKWNLHKHLVISTLWKPGVCT*RVVMCL Trigger: CAAGCACATCACCACCCTGCAGGTGCAGACCCCGGG...CTTCCAGAGCGTACTGATGACTAAGTGTTTATGCAAGTTCCATTTTGTCCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| 3UTR CAA 72 bp | CACAGAGCCCATCTCCTGGAAAGGCCTACAGAAAACTaGAGTCGTTGCAGAAATAAAACTTGGCAAGCGGCA | + |
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Preference number: 4 (lower is better) Translates to: HRAHLLERPTEN*SRCRNKTWQAA Trigger: TGCCGCTTGCCAAGTTTTATTTCTGCAACGACTCAAGTTTTCTGTAGGCCTTTCCAGGAGATGGGCTCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 72 bp | CAAGCAATAACCCACAAGGGACCCAAGAATGCTGCCTaGGGAACGTACATCACCACTCATGCTCTGCATAAA | + |
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Preference number: 4 (lower is better) Translates to: QAITHKGPKNAA*GTYITTHALHK Trigger: TTTATGCAGAGCATGAGTGGTGATGTACGTTCCCAAGGCAGCATTCTTGGGTCCCTTGTGGGTTATTGCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | GTAGCATGTGTGGTCCATACCACCAAACATGTTACTCTGTTACAGGTGTTGATGGTAAATTGGGCCCAGTaGGTGGAATCTCTCCTGACC | + |
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Preference number: 4 (lower is better) Translates to: VACVVHTTKHVTLLQVLMVNWAQ*VESLLT Trigger: GGTCAGGAGAGATTCCACGCACTGGGCCCAATTTAC...CATCAACACCTGTAACAGAGTAACATGTTTGGTGGTATGGACCACACATGCTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR CCA 90 bp | GGGACTGGTCCTGGCCAGTTTCCTTTCACCTCATTTGCCTTAAAACCTTCCATGAAGTATGGTAATGCTTaGCTCCCACAGACTCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: GTGPGQFPFTSFALKPSMKYGNA*LPQTLH Trigger: ATGCAGAGTCTGTGGGAGCCAAGCATTACCATACTT...CATGGAAGGTTTTAAGGCAAATGAGGTGAAAGGAAACTGGCCAGGACCAGTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | GTAGCATGTGTGGTCCATACCACCAAACATGTTACTCTGTTACAGGTGTTGATGGGCTCCCACAGACTCTaGATACGATTCTGCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: VACVVHTTKHVTLLQVLMGSHRL*IRFCFL Trigger: CAAGAAGCAGAATCGTATGCAGAGTCTGTGGGAGCC...CATCAACACCTGTAACAGAGTAACATGTTTGGTGGTATGGACCACACATGCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR CCA 90 bp | ATCAGTACGCTCTGGAAGTTACAAACCACCTCGTTCGCAAATTCTAATCCGTATGATTGCAAAAGGCAATaGGAAGGCAGGGAAGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: ISTLWKLQTTSFANSNPYDCKRQ*EGREGG Trigger: ACCCCCTTCCCTGCCTTCCCATTGCCTTTTGCAATC...ATACGGATTAGAATTTGCGAACGAGGTGGTTTGTAACTTCCAGAGCGTACTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| CDS-3UTR CCA 90 bp | AAGGGAAGGGGTGGTGAGCGCTATAACAGAGTCAAAAGCTTAGGTGTTATCACCCTGCTGTGTCCCATATaGCAAGGTTTACTCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: KGRGGERYNRVKSLGVITLLCPI*QGLLFF Trigger: GAAAAAGAGTAAACCTTGCCATATGGGACACAGCAG...GGTGATAACACCTAAGCTTTTGACTCTGTTATAGCGCTCACCACCCCTTCCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | TCAGCAATGCTTACTAACTGCGTTTATATTCTACTTCCTAGAAGAAGGAAATCCCGAGCCATTGCCTTTTaGTCTCTCATCCACCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: SAMLTNCVYILLPRRRKSRAIAF*SLIHLG Trigger: GCCCAGGTGGATGAGAGAGCAAAAGGCAATGGCTCG...GGATTTCCTTCTTCTAGGAAGTAGAATATAAACGCAGTTAGTAAGCATTGCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 72 bp | TTCGAGGCACACAGCACAGAGGTCAGCAGTTTGCATTaGGCAAGGCCAATAAGTAAACAAGTAAATCTACAG | + |
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Preference number: 4 (lower is better) Translates to: FEAHSTEVSSLH*ARPISKQVNLQ Trigger: CTGTAGATTTACTTGTTTACTTATTGGCCTTGCCAAATGCAAACTGCTGACCTCTGTGCTGTGTGCCTCGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 72 bp | GACCATTTCGAGGCACACAGCACAGAGGTCAGCAGTTaGCATTTGGCAAGGCCAATAAGTAAACAAGTAAAT | + |
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Preference number: 4 (lower is better) Translates to: DHFEAHSTEVSS*HLARPISKQVN Trigger: ATTTACTTGTTTACTTATTGGCCTTGCCAAATGCAAACTGCTGACCTCTGTGCTGTGTGCCTCGAAATGGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | ACAAAATGGAACTTGCATAAACACTTAGTCATCAGTACGCTCTGGAAGTTACAAGGTCCCCAAAGCGATTaGAAAAGGCAATGGGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: TKWNLHKHLVISTLWKLQGPQSD*KRQWEG Trigger: GCCTTCCCATTGCCTTTTGCAATCGCTTTGGGGACC...TTGTAACTTCCAGAGCGTACTGATGACTAAGTGTTTATGCAAGTTCCATTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| 3UTR CAA 72 bp | ATGAGAAGAGTCTATTTCCTATCTACAACAGTAGGATaGGCAGCAGTCTTTACTCCTGAAAAGGCCAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: MRRVYFLSTTVG*AAVFTPEKARR Trigger: CCTTCTGGCCTTTTCAGGAGTAAAGACTGCTGCCAATCCTACTGTTGTAGATAGGAAATAGACTCTTCTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | TCAGCAATGCTTACTAACTGCGTTTATATTCTACTTCCTAGAAGAAGGAAATCCCTTGACTCGAGCCATTaGCTTTTGCTCTCTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: SAMLTNCVYILLPRRRKSLDSSH*LLLSHP Trigger: TGGATGAGAGAGCAAAAGGCAATGGCTCGAGTCAAG...GGATTTCCTTCTTCTAGGAAGTAGAATATAAACGCAGTTAGTAAGCATTGCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR GCA 90 bp | TTCTTCAGAAGAGAAAGGCCATCAAATCCAAGACATAAATGTAGCATGTGTGGTCTCTGCATACGATTCTaGTTCTTGAATAGAGACGTG | + |
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Preference number: 4 (lower is better) Translates to: FFRRERPSNPRHKCSMCGLCIRF*FLNRDV Trigger: CACGTCTCTATTCAAGAAGCAGAATCGTATGCAGAG...ACCACACATGCTACATTTATGTCTTGGATTTGATGGCCTTTCTCTTCTGAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 72 bp | AGCACAGCAGGTACACCTGATTGCTTATTTTTGTTATaGAATCAGCATAGATCACAGAGAGAGACAGACAGA | + |
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Preference number: 4 (lower is better) Translates to: STAGTPDCLFLL*NQHRSQRETDR Trigger: TCTGTCTGTCTCTCTCTGTGATCTATGCTGATTCAATAACAAAAATAAGCAATCAGGTGTACCTGCTGTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 72 bp | CTTCATAGCACAGCAGGTACACCTGATTGCTTATTTTaGTTATTGAATCAGCATAGATCACAGAGAGAGACA | + |
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Preference number: 4 (lower is better) Translates to: LHSTAGTPDCLF*LLNQHRSQRET Trigger: TGTCTCTCTCTGTGATCTATGCTGATTCAATAACAAAAATAAGCAATCAGGTGTACCTGCTGTGCTATGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 72 bp | GTCCATACCACCAAACATGTTACTCTGTTACAGGTGTaGATGAACAATAGCAACATTGTAGATTATGCCGAA | + |
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Preference number: 4 (lower is better) Translates to: VHTTKHVTLLQV*MNNSNIVDYAE Trigger: TTCGGCATAATCTACAATGTTGCTATTGTTCATCAACACCTGTAACAGAGTAACATGTTTGGTGGTATGGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| 3UTR CAA 72 bp | GGTAACCATTCTAAAACAACACTGGCAGAAGGAAACTaGTTTAATAACAATAAAAAGGCAAACGCTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: GNHSKTTLAEGN*FNNNKKANAAF Trigger: AAAAGCAGCGTTTGCCTTTTTATTGTTATTAAACAAGTTTCCTTCTGCCAGTGTTGTTTTAGAATGGTTACC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR CAA 90 bp | AAACCAGCACGCAGACCGGGGGACTCCCCGACCTGCGCAGCCTCCACCGGCAACGGGTCCCCAAAGCGATaGCAAAAGGCAATGGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: KPARRPGDSPTCAASTGNGSPKR*QKAMGR Trigger: CCTTCCCATTGCCTTTTGCAATCGCTTTGGGGACCC...GTTGCCGGTGGAGGCTGCGCAGGTCGGGGAGTCCCCCGGTCTGCGTGCTGGTTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| CDS TCA 90 bp | AGGAACAGCACCCTCCGCTGCTCTGAGCTTGAGGCTCGTCGTCGATaGTCTGCACACCTCGCCTTGCAGCCCCGGCTTGACTCGAGCCAT | + |
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Preference number: 5 (lower is better) Translates to: RNSTLRCSELEARRR*SAHLALQPRLDSSH Trigger: ATGGCTCGAGTCAAGCCGGGGCTGCAAGGCGAGGTGTGCAGATCATCGACGACGAGCCTCAAGCTCAGAGCAGCGGAGGGTGCTGTTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS TCA 90 bp | GGCTCGTCGTCGATGATCTGCACACCTCGCCTTGCAGCCCCGGCTTaGCTCGAGCCATTGCCTTTTGCTCTCTCATCCACCTGGGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: GSSSMICTPRLAAPA*LEPLPFALSSTWAV Trigger: GACAGCCCAGGTGGATGAGAGAGCAAAAGGCAATGGCTCGAGTCAAGCCGGGGCTGCAAGGCGAGGTGTGCAGATCATCGACGACGAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR CAA 90 bp | GTCCCTCAGTCTGCCTCGGCTTTGTCTTCCCTTTTATGTGCCCGCAGGGGACTGAGGGTGGTGATGTGCTaGTCGTTGAACTTGTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: VPQSASALSSLLCARRGLRVVMC*SLNLFS Trigger: CGAGAACAAGTTCAACGACAAGCACATCACCACCCT...CAGTCCCCTGCGGGCACATAAAAGGGAAGACAAAGCCGAGGCAGACTGAGGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR CAA 90 bp | GTCCCTCAGTCTGCCTCGGCTTTGTCTTCCCTTTTATGTGCCCGCAGGGGACTGAGCTCCTCAATGCCTTaGTTCTGTTTAGCGGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: VPQSASALSSLLCARRGLSSSMP*FCLAEV Trigger: TACTTCCGCTAAACAGAACAAAGGCATTGAGGAGCT...CAGTCCCCTGCGGGCACATAAAAGGGAAGACAAAGCCGAGGCAGACTGAGGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR CAA 90 bp | CAATGCTTACTAACTGCGTTTATATTCTACTTCCTAGAAGAAGGAAATCCAGGGCCTTGCAGCCCCGGCTaGACTCGAGCCATTGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: QCLLTAFIFYFLEEGNPGPCSPG*TRAIAF Trigger: AAAGGCAATGGCTCGAGTCAAGCCGGGGCTGCAAGG...CCCTGGATTTCCTTCTTCTAGGAAGTAGAATATAAACGCAGTTAGTAAGCATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS-3UTR CAA 90 bp | TCTGGAAGTTACAAACCACCTCGTTCGCAAATTCTAATCCGTATCCGAGTTCCTAGGGTGGTGATGTGCTaGTCGTTGAACTTGTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: SGSYKPPRSQILIRIRVPRVVMC*SLNLFS Trigger: CGAGAACAAGTTCAACGACAAGCACATCACCACCCT...AGGAACTCGGATACGGATTAGAATTTGCGAACGAGGTGGTTTGTAACTTCCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218831.2 |
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| CDS-3UTR CAA 90 bp | TTATTTTTGTTATTGAATCAGCATAGATCACAGAGAGAGACAGACAGACAGACATCGAGCCATTGCCTTTaGCTCTCTCATCCACCTGGG | + |
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Preference number: 5 (lower is better) Translates to: LFLLLNQHRSQRETDRQTSSHCL*LSHPPG Trigger: CCCAGGTGGATGAGAGAGCAAAAGGCAATGGCTCGA...TGTCTGTCTGTCTGTCTCTCTCTGTGATCTATGCTGATTCAATAACAAAAATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS TCA 72 bp | TCTTCCCCACGCAGCCTTCCCCGAGCAGCACCACCTTaGAGGAGTAGGCTCGGCCCGCCGCCGCCGCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: SSPRSLPRAAPP*RSRLGPPPPPP Trigger: GGGCGGCGGCGGCGGCGGGCCGAGCCTACTCCTTCAAGGTGGTGCTGCTCGGGGAAGGCTGCGTGGGGAAGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020343.9 ENSMUST00000218831.2 |
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| CDS TCA 72 bp | ACCCTCCGCTGCTCTGAGCTTGAGGCTCGTCGTCGATaGTCTGCACACCTCGCCTTGCAGCCCCGGCTTGAC | + |
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Preference number: 6 (lower is better) Translates to: TLRCSELEARRR*SAHLALQPRLD Trigger: GTCAAGCCGGGGCTGCAAGGCGAGGTGTGCAGATCATCGACGACGAGCCTCAAGCTCAGAGCAGCGGAGGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS CAA 72 bp | TTAGCCGGAGGAACAGCACCCTCCGCTGCTCTGAGCTaGAGGCTCGTCGTCGATGATCTGCACACCTCGCCT | + |
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Preference number: 6 (lower is better) Translates to: LAGGTAPSAALS*RLVVDDLHTSP Trigger: AGGCGAGGTGTGCAGATCATCGACGACGAGCCTCAAGCTCAGAGCAGCGGAGGGTGCTGTTCCTCCGGCTAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS GCA 72 bp | CACCTCGCCTTGCAGCCCCGGCTTGACTCGAGCCATTaGCTTTTGCTCTCTCATCCACCTGGGCTGTCTCTA | + |
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Preference number: 6 (lower is better) Translates to: HLALQPRLDSSH*LLLSHPPGLSL Trigger: TAGAGACAGCCCAGGTGGATGAGAGAGCAAAAGGCAATGGCTCGAGTCAAGCCGGGGCTGCAAGGCGAGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS GCA 72 bp | TTGAGGCTCGTCGTCGATGATCTGCACACCTCGCCTTaGAGCCCCGGCTTGACTCGAGCCATTGCCTTTTGC | + |
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Preference number: 6 (lower is better) Translates to: LRLVVDDLHTSP*SPGLTRAIAFC Trigger: GCAAAAGGCAATGGCTCGAGTCAAGCCGGGGCTGCAAGGCGAGGTGTGCAGATCATCGACGACGAGCCTCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS TCA 72 bp | TCGATGATCTGCACACCTCGCCTTGCAGCCCCGGCTTaGCTCGAGCCATTGCCTTTTGCTCTCTCATCCACC | + |
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Preference number: 6 (lower is better) Translates to: SMICTPRLAAPA*LEPLPFALSST Trigger: GGTGGATGAGAGAGCAAAAGGCAATGGCTCGAGTCAAGCCGGGGCTGCAAGGCGAGGTGTGCAGATCATCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS CAA 72 bp | GCCTTGCAGCCCCGGCTTGACTCGAGCCATTGCCTTTaGCTCTCTCATCCACCTGGGCTGTCTCTATCATTC | + |
|
Preference number: 6 (lower is better) Translates to: ALQPRLDSSHCL*LSHPPGLSLSF Trigger: GAATGATAGAGACAGCCCAGGTGGATGAGAGAGCAAAAGGCAATGGCTCGAGTCAAGCCGGGGCTGCAAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS CAA 90 bp | GCACACCTCGCCTTGCAGCCCCGGCTTGACTCGAGCCATTGCCTTTaGCTCTCTCATCCACCTGGGCTGTCTCTATCATTCTTTTACAAA | + |
|
Preference number: 6 (lower is better) Translates to: AHLALQPRLDSSHCL*LSHPPGLSLSFFYK Trigger: TTTGTAAAAGAATGATAGAGACAGCCCAGGTGGATGAGAGAGCAAAAGGCAATGGCTCGAGTCAAGCCGGGGCTGCAAGGCGAGGTGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS GCA 72 bp | AGCGGAAGTATGGTAATGCTTGGCTCCCACAGACTCTaGATACGATTCTGCTTCTTGAATAGAGACGTGCCT | + |
|
Preference number: 6 (lower is better) Translates to: SGSMVMLGSHRL*IRFCFLNRDVP Trigger: AGGCACGTCTCTATTCAAGAAGCAGAATCGTATGCAGAGTCTGTGGGAGCCAAGCATTACCATACTTCCGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS CAA 72 bp | CTTGGCTCCCACAGACTCTGCATACGATTCTGCTTCTaGAATAGAGACGTGCCTCTCCTTTTCCAAGTCTAT | + |
|
Preference number: 6 (lower is better) Translates to: LGSHRLCIRFCF*NRDVPLLFQVY Trigger: ATAGACTTGGAAAAGGAGAGGCACGTCTCTATTCAAGAAGCAGAATCGTATGCAGAGTCTGTGGGAGCCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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| CDS TCA 72 bp | TTGGCTCCCACAGACTCTGCATACGATTCTGCTTCTTaGATAGAGACGTGCCTCTCCTTTTCCAAGTCTATT | + |
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Preference number: 6 (lower is better) Translates to: LAPTDSAYDSAS*IETCLSFSKSI Trigger: AATAGACTTGGAAAAGGAGAGGCACGTCTCTATTCAAGAAGCAGAATCGTATGCAGAGTCTGTGGGAGCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020343.9 |
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