RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAB20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031504

Ensembl transcript IDs: ENSMUST00000033900.7

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCAGTAGATGAGGTGGCACCAGGCAGGCTCCACAGGGGGTTTGAGTaGCACCTCCGGATGCCCAGAGGTTGCTGGGCACTCTGGCCTGTA +
Preference number: 1 (lower is better)
Translates to: AVDEVAPGRLHRGFE*HLRMPRGCWALWPV
Trigger: TACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAGCCTGCCTGGTGCCACCTCATCTACTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR GCA 90 bp AGGCTCCACAGGGGGTTTGAGTGCCACCTCCGGATGCCCAGAGGTTaGTGGGCACTCTGGCCTGTATTAGCAGCTGGTGGTCACTCTGCC +
Preference number: 1 (lower is better)
Translates to: RLHRGFECHLRMPRG*WALWPVLAAGGHSA
Trigger: GGCAGAGTGACCACCAGCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR CCA 90 bp GGGTTTGAGTGCCACCTCCGGATGCCCAGAGGTTGCTGGGCACTCTaGCCTGTATTAGCAGCTGGTGGTCACTCTGCCTATTGTCCTCGG +
Preference number: 1 (lower is better)
Translates to: GFECHLRMPRGCWAL*PVLAAGGHSAYCPR
Trigger: CCGAGGACAATAGGCAGAGTGACCACCAGCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR CCA 90 bp CTCCACAGGGGGTTTGAGTGCCACCTCCGGATGCCCAGAGGTTGCTaGGCACTCTGGCCTGTATTAGCAGCTGGTGGTCACTCTGCCTAT +
Preference number: 1 (lower is better)
Translates to: LHRGFECHLRMPRGC*ALWPVLAAGGHSAY
Trigger: ATAGGCAGAGTGACCACCAGCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR GCA 90 bp TGGACACAGGCCTCTGAGGACAGACACAGTGCAGGACGTAGTGACTaGAGAGTCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCT +
Preference number: 1 (lower is better)
Translates to: WTQASEDRHSAGRSD*RVKTSPRQVFRLQA
Trigger: AGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTCCTGCACTGTGTCTGTCCTCAGAGGCCTGTGTCCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR-3UTR GCA 90 bp GACGTAGTGACTGCAGAGTCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCGGATGCCCAGAGGTTaGTGGGCACTCTGGCCTGTA +
Preference number: 2 (lower is better)
Translates to: DVVTAESRPVQGRSSDCRRMPRG*WALWPV
Trigger: TACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCG...CCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR-3UTR CCA 90 bp CATAGGGCAGTAGATGAGGTGGCACCAGGCAGGCTCCACAGGGGGTTTGAGTGCGCCTGTATTAGCAGCTaGTGGTCACTCTGCCTATTG +
Preference number: 2 (lower is better)
Translates to: HRAVDEVAPGRLHRGFECACISS*WSLCLL
Trigger: CAATAGGCAGAGTGACCACCAGCTGCTAATACAGGC...GCACTCAAACCCCCTGTGGAGCCTGCCTGGTGCCACCTCATCTACTGCCCTATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR-3UTR TCA 90 bp AGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCTCCATGGTGGTATCTCCATGGTACCCAGTGCTGTGTaGGACTTCTTAGCCCAGTGG +
Preference number: 2 (lower is better)
Translates to: RPVQGRSSDCRLHGGISMVPSAV*DFLAQW
Trigger: CCACTGGGCTAAGAAGTCTCACACAGCACTGGGTAC...CATGGAGATACCACCATGGAGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR-3UTR GCA 90 bp CAGGCCTCTGAGGACAGACACAGTGCAGGACGTAGTGACTGCAGAGTCAAGACCGTCCTCGGTACCCAGTaGTGTGTGAGACTTCTTAGC +
Preference number: 2 (lower is better)
Translates to: QASEDRHSAGRSDCRVKTVLGTQ*CVRLLS
Trigger: GCTAAGAAGTCTCACACAGCACTGGGTACCGAGGAC...GGTCTTGACTCTGCAGTCACTACGTCCTGCACTGTGTCTGTCCTCAGAGGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR-3UTR CCA 90 bp GTGCAGGACGTAGTGACTGCAGAGTCAAGACCAGTCCAAGGCAGGTCTTCAGACATGCCCAGAGGTTGCTaGGCACTCTGGCCTGTATTA +
Preference number: 2 (lower is better)
Translates to: VQDVVTAESRPVQGRSSDMPRGC*ALWPVL
Trigger: TAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCAT...GTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTCCTGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR GCA 72 bp GAGGTGGCACCAGGCAGGCTCCACAGGGGGTTTGAGTaGCACCTCCGGATGCCCAGAGGTTGCTGGGCACTC +
Preference number: 3 (lower is better)
Translates to: EVAPGRLHRGFE*HLRMPRGCWAL
Trigger: GAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAGCCTGCCTGGTGCCACCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR GCA 72 bp AGGGGGTTTGAGTGCCACCTCCGGATGCCCAGAGGTTaGTGGGCACTCTGGCCTGTATTAGCAGCTGGTGGT +
Preference number: 3 (lower is better)
Translates to: RGFECHLRMPRG*WALWPVLAAGG
Trigger: ACCACCAGCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR CCA 72 bp GGGTTTGAGTGCCACCTCCGGATGCCCAGAGGTTGCTaGGCACTCTGGCCTGTATTAGCAGCTGGTGGTCAC +
Preference number: 3 (lower is better)
Translates to: GFECHLRMPRGC*ALWPVLAAGGH
Trigger: GTGACCACCAGCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR-3UTR CAA 90 bp TCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCTCCATGGTGGTATCTCCCCGGATGCCCAGAGGTaGCTGGGCACTCTGGCCTGT +
Preference number: 3 (lower is better)
Translates to: SRPVQGRSSDCRLHGGISPDAQR*LGTLAC
Trigger: ACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGG...GGAGATACCACCATGGAGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR CCA 72 bp TGCCACCTCCGGATGCCCAGAGGTTGCTGGGCACTCTaGCCTGTATTAGCAGCTGGTGGTCACTCTGCCTAT +
Preference number: 3 (lower is better)
Translates to: CHLRMPRGCWAL*PVLAAGGHSAY
Trigger: ATAGGCAGAGTGACCACCAGCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR GCA 72 bp GCCTCTGAGGACAGACACAGTGCAGGACGTAGTGACTaGAGAGTCAAGACCAGTCCAAGGCAGGTCTTCAGA +
Preference number: 3 (lower is better)
Translates to: ASEDRHSAGRSD*RVKTSPRQVFR
Trigger: TCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTCCTGCACTGTGTCTGTCCTCAGAGGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
3UTR CCA 72 bp CAGGTATCAAACAGGAAGACCATATATGAATCACAGTaGACACAGGCCTCTGAGGACAGACACAGTGCAGGA +
Preference number: 3 (lower is better)
Translates to: QVSNRKTIYESQ*TQASEDRHSAG
Trigger: TCCTGCACTGTGTCTGTCCTCAGAGGCCTGTGTCCACTGTGATTCATATATGGTCTTCCTGTTTGATACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR TCA 90 bp CATAGGGCAGTAGATGAGGTGGCACCAGGCAGGCTCCACAGGGGGTTTGAGTGCCGCCGCCCACGGTGCTaGCCGTGTCCGGGAAGCGAC +
Preference number: 4 (lower is better)
Translates to: HRAVDEVAPGRLHRGFECRRPRC*PCPGSD
Trigger: GTCGCTTCCCGGACACGGTCAGCACCGTGGGCGGCG...GCACTCAAACCCCCTGTGGAGCCTGCCTGGTGCCACCTCATCTACTGCCCTATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CCA 90 bp GCAGGCTCCACAGGGGGTTTGAGTGCCACCTCCGGATGCCCAGAGGTTGCTGGGCTGGCTGCACCTGCTTaGGTACCTTGGTGGAGACAC +
Preference number: 4 (lower is better)
Translates to: AGSTGGLSATSGCPEVAGLAAPA*VPWWRH
Trigger: GTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAG...CCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAGCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR TCA 90 bp GTGCCACCTCCGGATGCCCAGAGGTTGCTGGGCACTCTGGCCTGTATTAGCAGCATCCACAGTCTGATCTaGCTCCTCAGCCCTCTGCCG +
Preference number: 4 (lower is better)
Translates to: VPPPDAQRLLGTLACISSIHSLI*LLSPLP
Trigger: CGGCAGAGGGCTGAGGAGTCAGATCAGACTGTGGAT...GCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR TCA 90 bp GCAGGCTCCACAGGGGGTTTGAGTGCCACCTCCGGATGCCCAGAGGTTGCTGGGGCTATATCCACAGTCTaGTCTGACTCCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: AGSTGGLSATSGCPEVAGAISTV*SDSSAL
Trigger: GAGGGCTGAGGAGTCAGATCAGACTGTGGATATAGC...CCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAGCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR TCA 90 bp GACGTAGTGACTGCAGAGTCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGAGGGAGCCCAGACCATaGAACTGCTCCCGCCCTGCG +
Preference number: 4 (lower is better)
Translates to: DVVTAESRPVQGRSSDCRREPRP*NCSRPA
Trigger: CGCAGGGCGGGAGCAGTTTCATGGTCTGGGCTCCCT...CCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CCA 90 bp CATAGGGCAGTAGATGAGGTGGCACCAGGCAGGCTCCACAGGGGGTTTGAGTGCGCTTGGGTACCTTGGTaGAGACACAGCTGCCCACCT +
Preference number: 4 (lower is better)
Translates to: HRAVDEVAPGRLHRGFECAWVPW*RHSCPP
Trigger: AGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGC...GCACTCAAACCCCCTGTGGAGCCTGCCTGGTGCCACCTCATCTACTGCCCTATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CCA 90 bp TCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCTCCATGGTGGTATCTCCGGCCACTGCATCCTCTaGCTGCACCTGCTTGGGTAC +
Preference number: 4 (lower is better)
Translates to: SRPVQGRSSDCRLHGGISGHCIL*LHLLGY
Trigger: GTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCC...GGAGATACCACCATGGAGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR GCA 90 bp TCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCTCCATGGTGGTATCTCCACTGCATCCTCTGGCTaGACCTGCTTGGGTACCTTG +
Preference number: 4 (lower is better)
Translates to: SRPVQGRSSDCRLHGGISTASSG*TCLGTL
Trigger: CAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGT...GGAGATACCACCATGGAGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR GCA 90 bp TCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCTCCATGGTGGTATCTCCCTTGTAAAGGGCCACTaGATCCTCTGGCTGCACCTG +
Preference number: 4 (lower is better)
Translates to: SRPVQGRSSDCRLHGGISLVKGH*ILWLHL
Trigger: CAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACAAG...GGAGATACCACCATGGAGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR GCA 90 bp TCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCTCCATGGTGGTATCTCCGTCTCGAAGCACATCTaGTCAGCAGCTGGCATCTCC +
Preference number: 4 (lower is better)
Translates to: SRPVQGRSSDCRLHGGISVSKHI*SAAGIS
Trigger: GGAGATGCCAGCTGCTGAGCAGATGTGCTTCGAGAC...GGAGATACCACCATGGAGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR GCA 90 bp GACGTAGTGACTGCAGAGTCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGGACTCCTCAGCCCTCTaGCGCATGATCATAGGTACC +
Preference number: 4 (lower is better)
Translates to: DVVTAESRPVQGRSSDCRDSSAL*RMIIGT
Trigger: GGTACCTATGATCATGCGGCAGAGGGCTGAGGAGTC...CCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CCA 90 bp GTGCCACCTCCGGATGCCCAGAGGTTGCTGGGCACTCTGGCCTGTATTAGCAGCCTTTGTTCCCCACAATaGCAAACAGGCAGTCATTGT +
Preference number: 4 (lower is better)
Translates to: VPPPDAQRLLGTLACISSLCSPQ*QTGSHC
Trigger: ACAATGACTGCCTGTTTGCCATTGTGGGGAACAAAG...GCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR TCA 90 bp GACGTAGTGACTGCAGAGTCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCCCATATGGAGATGTTaGAGGAACGCCACTGCTTCA +
Preference number: 4 (lower is better)
Translates to: DVVTAESRPVQGRSSDCRPIWRC*RNATAS
Trigger: TGAAGCAGTGGCGTTCCTTCAACATCTCCATATGGG...CCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS GCA 90 bp GCTGCACCTGCTTGGGTACCTTGGTGGAGACACAGCTGCCCACCTTaGCAGAGGCCGGTCCTTCCTTCTCCCCGCCCTCGGTGTCCCGCT +
Preference number: 5 (lower is better)
Translates to: AAPAWVPWWRHSCPP*QRPVLPSPRPRCPA
Trigger: AGCGGGACACCGAGGGCGGGGAGAAGGAAGGACCGGCCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS GCA 90 bp CATCCTCTGGCTGCACCTGCTTGGGTACCTTGGTGGAGACACAGCTaGCCACCTTGCCAGAGGCCGGTCCTTCCTTCTCCCCGCCCTCGG +
Preference number: 5 (lower is better)
Translates to: HPLAAPAWVPWWRHS*PPCQRPVLPSPRPR
Trigger: CCGAGGGCGGGGAGAAGGAAGGACCGGCCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CAA 90 bp GAGGTGGCACCAGGCAGGCTCCACAGGGGGTTTGAGTGCCACCTCCGGATGCCCACCTGCTTGGGTACCTaGGTGGAGACACAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: EVAPGRLHRGFECHLRMPTCLGT*VETQLP
Trigger: GGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGT...GGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAGCCTGCCTGGTGCCACCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS TCA 90 bp GACCATGAAACTGCTCCCGCCCTGCGGTGTCCCATATGGAGATGTTaGAGGAACGCCACTGCTTCAGGTAGAAGGCGCCGCCCACGGTGC +
Preference number: 5 (lower is better)
Translates to: DHETAPALRCPIWRC*RNATASGRRRRPRC
Trigger: GCACCGTGGGCGGCGCCTTCTACCTGAAGCAGTGGCGTTCCTTCAACATCTCCATATGGGACACCGCAGGGCGGGAGCAGTTTCATGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 90 bp TGTAAAGGGCCACTGCATCCTCTGGCTGCACCTGCTTGGGTACCTTaGTGGAGACACAGCTGCCCACCTTGCCAGAGGCCGGTCCTTCCT +
Preference number: 5 (lower is better)
Translates to: CKGPLHPLAAPAWVP*WRHSCPPCQRPVLP
Trigger: AGGAAGGACCGGCCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 90 bp GGATCTTCTTGTAAAGGGCCACTGCATCCTCTGGCTGCACCTGCTTaGGTACCTTGGTGGAGACACAGCTGCCCACCTTGCCAGAGGCCG +
Preference number: 5 (lower is better)
Translates to: GSSCKGPLHPLAAPA*VPWWRHSCPPCQRP
Trigger: CGGCCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACAAGAAGATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CAA 90 bp GCAGGCTCCACAGGGGGTTTGAGTGCCACCTCCGGATGCCCAGAGGTTGCTGGGGCAAACAGGCAGTCATaGTTGGCTGTTTCTGTCAGG +
Preference number: 5 (lower is better)
Translates to: AGSTGGLSATSGCPEVAGANRQS*LAVSVR
Trigger: CCTGACAGAAACAGCCAACAATGACTGCCTGTTTGC...CCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAGCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CAA 90 bp CATAGGGCAGTAGATGAGGTGGCACCAGGCAGGCTCCACAGGGGGTTTGAGTGCTCTGGCTGCACCTGCTaGGGTACCTTGGTGGAGACA +
Preference number: 5 (lower is better)
Translates to: HRAVDEVAPGRLHRGFECSGCTC*GTLVET
Trigger: TGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGA...GCACTCAAACCCCCTGTGGAGCCTGCCTGGTGCCACCTCATCTACTGCCCTATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 90 bp GTCAGGCCCAGGAATCTGTCCTCCAGCTCAAACAGGCTCTGTGGGTaGTTCACATCGTATGTAAGGATGATAGCGGCCGCTCCGCGGCAG +
Preference number: 5 (lower is better)
Translates to: VRPRNLSSSSNRLCG*FTSYVRMIAAAPRQ
Trigger: CTGCCGCGGAGCGGCCGCTATCATCCTTACATACGATGTGAACCACCCACAGAGCCTGTTTGAGCTGGAGGACAGATTCCTGGGCCTGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CAA 90 bp GTGCCACCTCCGGATGCCCAGAGGTTGCTGGGCACTCTGGCCTGTATTAGCAGCACATTGTATCCAGTCTaGGCACTGGTCTCGAAGCAC +
Preference number: 5 (lower is better)
Translates to: VPPPDAQRLLGTLACISSTLYPV*ALVSKH
Trigger: GTGCTTCGAGACCAGTGCCAAGACTGGATACAATGT...GCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 90 bp TTCTGTCAGGCCCAGGAATCTGTCCTCCAGCTCAAACAGGCTCTGTaGGTGGTTCACATCGTATGTAAGGATGATAGCGGCCGCTCCGCG +
Preference number: 5 (lower is better)
Translates to: FCQAQESVLQLKQAL*VVHIVCKDDSGRSA
Trigger: CGCGGAGCGGCCGCTATCATCCTTACATACGATGTGAACCACCCACAGAGCCTGTTTGAGCTGGAGGACAGATTCCTGGGCCTGACAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 90 bp CATCTTGTACTTCAGGATCTTCTTGTAAAGGGCCACTGCATCCTCTaGCTGCACCTGCTTGGGTACCTTGGTGGAGACACAGCTGCCCAC +
Preference number: 5 (lower is better)
Translates to: HLVLQDLLVKGHCIL*LHLLGYLGGDTAAH
Trigger: GTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACAAGAAGATCCTGAAGTACAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CAA 90 bp TCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGCTCCATGGTGGTATCTCCAACAGGCAGTCATTGTaGGCTGTTTCTGTCAGGCCC +
Preference number: 5 (lower is better)
Translates to: SRPVQGRSSDCRLHGGISNRQSL*AVSVRP
Trigger: GGGCCTGACAGAAACAGCCAACAATGACTGCCTGTT...GGAGATACCACCATGGAGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CAA 90 bp GACGTAGTGACTGCAGAGTCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGTCCCATATGGAGATGTaGAAGGAACGCCACTGCTTC +
Preference number: 5 (lower is better)
Translates to: DVVTAESRPVQGRSSDCRSHMEM*KERHCF
Trigger: GAAGCAGTGGCGTTCCTTCAACATCTCCATATGGGA...CCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS-3UTR CAA 90 bp GACGTAGTGACTGCAGAGTCAAGACCAGTCCAAGGCAGGTCTTCAGACTGCAGGAAGAGGAGGTCCACATaGTATCCAGTCTTGGCACTG +
Preference number: 5 (lower is better)
Translates to: DVVTAESRPVQGRSSDCRKRRST*YPVLAL
Trigger: CAGTGCCAAGACTGGATACAATGTGGACCTCCTCTT...CCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS GCA 90 bp CTCATCCAGCATCTTGTACTTCAGGATCTTCTTGTAAAGGGCCACTaGATCCTCTGGCTGCACCTGCTTGGGTACCTTGGTGGAGACACA +
Preference number: 5 (lower is better)
Translates to: LIQHLVLQDLLVKGH*ILWLHLLGYLGGDT
Trigger: TGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACAAGAAGATCCTGAAGTACAAGATGCTGGATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 90 bp TCAGGTCCACTTTGTTCCCCACAATGGCAAACAGGCAGTCATTGTTaGCTGTTTCTGTCAGGCCCAGGAATCTGTCCTCCAGCTCAAACA +
Preference number: 5 (lower is better)
Translates to: SGPLCSPQWQTGSHC*LFLSGPGICPPAQT
Trigger: TGTTTGAGCTGGAGGACAGATTCCTGGGCCTGACAGAAACAGCCAACAATGACTGCCTGTTTGCCATTGTGGGGAACAAAGTGGACCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 90 bp ACAAGGTTTCAAAGAGGAGGTCCACATTGTATCCAGTCTTGGCACTaGTCTCGAAGCACATCTGCTCAGCAGCTGGCATCTCCCTCTCAT +
Preference number: 5 (lower is better)
Translates to: TRFQRGGPHCIQSWH*SRSTSAQQLASPSH
Trigger: ATGAGAGGGAGATGCCAGCTGCTGAGCAGATGTGCTTCGAGACCAGTGCCAAGACTGGATACAATGTGGACCTCCTCTTTGAAACCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CAA 90 bp GGCTGCACCTGCTTGGGTACCTTGGTGGAGACACAGCTGCCCACCTaGCCAGAGGCCGGTCCTTCCTTCTCCCCGCCCTCGGTGTCCCGC +
Preference number: 6 (lower is better)
Translates to: GCTCLGTLVETQLPT*PEAGPSFSPPSVSR
Trigger: GCGGGACACCGAGGGCGGGGAGAAGGAAGGACCGGCCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS TCA 72 bp GCGGCCGCTCCGCGGCAGTACAGGGAGCCCAGACCATaGAACTGCTCCCGCCCTGCGGTGTCCCATATGGAG +
Preference number: 6 (lower is better)
Translates to: AAAPRQYREPRP*NCSRPAVSHME
Trigger: CTCCATATGGGACACCGCAGGGCGGGAGCAGTTTCATGGTCTGGGCTCCCTGTACTGCCGCGGAGCGGCCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS TCA 72 bp GCCACTGCTTCAGGTAGAAGGCGCCGCCCACGGTGCTaGCCGTGTCCGGGAAGCGACGCTCCATGTAGCGCT +
Preference number: 6 (lower is better)
Translates to: ATASGRRRRPRC*PCPGSDAPCSA
Trigger: AGCGCTACATGGAGCGTCGCTTCCCGGACACGGTCAGCACCGTGGGCGGCGCCTTCTACCTGAAGCAGTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS GCA 72 bp GCTTGGGTACCTTGGTGGAGACACAGCTGCCCACCTTaGCAGAGGCCGGTCCTTCCTTCTCCCCGCCCTCGG +
Preference number: 6 (lower is better)
Translates to: AWVPWWRHSCPP*QRPVLPSPRPR
Trigger: CCGAGGGCGGGGAGAAGGAAGGACCGGCCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 72 bp CCACTGCATCCTCTGGCTGCACCTGCTTGGGTACCTTaGTGGAGACACAGCTGCCCACCTTGCCAGAGGCCG +
Preference number: 6 (lower is better)
Translates to: PLHPLAAPAWVP*WRHSCPPCQRP
Trigger: CGGCCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CAA 72 bp GCCACTGCATCCTCTGGCTGCACCTGCTTGGGTACCTaGGTGGAGACACAGCTGCCCACCTTGCCAGAGGCC +
Preference number: 6 (lower is better)
Translates to: ATASSGCTCLGT*VETQLPTLPEA
Trigger: GGCCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS TCA 72 bp ACTGCTCCCGCCCTGCGGTGTCCCATATGGAGATGTTaGAGGAACGCCACTGCTTCAGGTAGAAGGCGCCGC +
Preference number: 6 (lower is better)
Translates to: TAPALRCPIWRC*RNATASGRRRR
Trigger: GCGGCGCCTTCTACCTGAAGCAGTGGCGTTCCTTCAACATCTCCATATGGGACACCGCAGGGCGGGAGCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 72 bp TGTAAAGGGCCACTGCATCCTCTGGCTGCACCTGCTTaGGTACCTTGGTGGAGACACAGCTGCCCACCTTGC +
Preference number: 6 (lower is better)
Translates to: CKGPLHPLAAPA*VPWWRHSCPPC
Trigger: GCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CAA 72 bp CCGCCCTCGGTGTCCCGCTCCGAGGTCAGGTCCACTTaGTTCCCCACAATGGCAAACAGGCAGTCATTGTTG +
Preference number: 6 (lower is better)
Translates to: PPSVSRSEVRST*FPTMANRQSLL
Trigger: CAACAATGACTGCCTGTTTGCCATTGTGGGGAACAAAGTGGACCTGACCTCGGAGCGGGACACCGAGGGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 72 bp GCCCAGGAATCTGTCCTCCAGCTCAAACAGGCTCTGTaGGTGGTTCACATCGTATGTAAGGATGATAGCGGC +
Preference number: 6 (lower is better)
Translates to: AQESVLQLKQAL*VVHIVCKDDSG
Trigger: GCCGCTATCATCCTTACATACGATGTGAACCACCCACAGAGCCTGTTTGAGCTGGAGGACAGATTCCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS TCA 72 bp GGGTGTTTTGCAGCTGGCTATATCCACAGTCTGATCTaGCTCCTCAGCCCTCTGCCGCATGATCATAGGTAC +
Preference number: 6 (lower is better)
Translates to: GCFAAGYIHSLI*LLSPLPHDHRY
Trigger: GTACCTATGATCATGCGGCAGAGGGCTGAGGAGTCAGATCAGACTGTGGATATAGCCAGCTGCAAAACACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 72 bp AGGAATCTGTCCTCCAGCTCAAACAGGCTCTGTGGGTaGTTCACATCGTATGTAAGGATGATAGCGGCCGCT +
Preference number: 6 (lower is better)
Translates to: RNLSSSSNRLCG*FTSYVRMIAAA
Trigger: AGCGGCCGCTATCATCCTTACATACGATGTGAACCACCCACAGAGCCTGTTTGAGCTGGAGGACAGATTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CAA 90 bp GTCAGGTCCACTTTGTTCCCCACAATGGCAAACAGGCAGTCATTGTaGGCTGTTTCTGTCAGGCCCAGGAATCTGTCCTCCAGCTCAAAC +
Preference number: 6 (lower is better)
Translates to: VRSTLFPTMANRQSL*AVSVRPRNLSSSSN
Trigger: GTTTGAGCTGGAGGACAGATTCCTGGGCCTGACAGAAACAGCCAACAATGACTGCCTGTTTGCCATTGTGGGGAACAAAGTGGACCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS GCA 72 bp CATCTTGTACTTCAGGATCTTCTTGTAAAGGGCCACTaGATCCTCTGGCTGCACCTGCTTGGGTACCTTGGT +
Preference number: 6 (lower is better)
Translates to: HLVLQDLLVKGH*ILWLHLLGYLG
Trigger: ACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACAAGAAGATCCTGAAGTACAAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CCA 72 bp CTTTGTTCCCCACAATGGCAAACAGGCAGTCATTGTTaGCTGTTTCTGTCAGGCCCAGGAATCTGTCCTCCA +
Preference number: 6 (lower is better)
Translates to: LCSPQWQTGSHC*LFLSGPGICPP
Trigger: TGGAGGACAGATTCCTGGGCCTGACAGAAACAGCCAACAATGACTGCCTGTTTGCCATTGTGGGGAACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7
CDS CAA 72 bp ACTTTGTTCCCCACAATGGCAAACAGGCAGTCATTGTaGGCTGTTTCTGTCAGGCCCAGGAATCTGTCCTCC +
Preference number: 6 (lower is better)
Translates to: TLFPTMANRQSL*AVSVRPRNLSS
Trigger: GGAGGACAGATTCCTGGGCCTGACAGAAACAGCCAACAATGACTGCCTGTTTGCCATTGTGGGGAACAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033900.7