Pregenerated sensors for RAB1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024870Ensembl transcript IDs: ENSMUST00000025804.7, ENSMUST00000236149.2, ENSMUST00000237201.2, ENSMUST00000237438.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGCTATGGGGCTCTCGCAGCCCTGGCACCTGTCCTGAGGTCCGATaGAGGACCCTGGATCTGAGGCCCTGGATCCCCTGGCTACTGCCT | + |
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Preference number: 1 (lower is better) Translates to: WLWGSRSPGTCPEVR*RTLDLRPWIPWLLP Trigger: AGGCAGTAGCCAGGGGATCCAGGGCCTCAGATCCAGGGTCCTGCATCGGACCTCAGGACAGGTGCCAGGGCTGCGAGAGCCCCATAGCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR GCA 90 bp | ATGCAGGACCCTGGATCTGAGGCCCTGGATCCCCTGGCTACTGCCTaGACCCAGGGGCAGCAGAGGCAGGGAGGCCCTTGCTATTGGGAA | + |
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Preference number: 1 (lower is better) Translates to: MQDPGSEALDPLATA*TQGQQRQGGPCYWE Trigger: TTCCCAATAGCAAGGGCCTCCCTGCCTCTGCTGCCCCTGGGTGCAGGCAGTAGCCAGGGGATCCAGGGCCTCAGATCCAGGGTCCTGCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR TCA 90 bp | TGCACCCACATTCCCCAGAGAAGCAGGTCTGGCCCTGTCAGGCTCTaGGGAATGGAGGAAGAACAAGCCAGATGTGCTGCCTCGGAAAAG | + |
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Preference number: 1 (lower is better) Translates to: CTHIPQRSRSGPVRL*GMEEEQARCAASEK Trigger: CTTTTCCGAGGCAGCACATCTGGCTTGTTCTTCCTCCATTCCTCAGAGCCTGACAGGGCCAGACCTGCTTCTCTGGGGAATGTGGGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR-3UTR TCA 90 bp | GGCACCTGTCCTGAGGTCCGATGCAGGACCCTGGATCTGAGGCCCTGGATCCCCATACATGGGGGTGAGTaGCAGACAGCGGAGCCCTCA | + |
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Preference number: 2 (lower is better) Translates to: GTCPEVRCRTLDLRPWIPIHGGE*QTAEPS Trigger: TGAGGGCTCCGCTGTCTGTCACTCACCCCCATGTAT...GGGGATCCAGGGCCTCAGATCCAGGGTCCTGCATCGGACCTCAGGACAGGTGCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAAAGGTGCGTGGTGGGCATCTTTTCAAGGTACCCAGAGGCAGCAGCGGATCCAGGGGCATCATCTaGACAAGGTGCCCTCCCCCA | + |
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Preference number: 2 (lower is better) Translates to: QRKVRGGHLFKVPRGSSGSRGII*TRCPPP Trigger: TGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGA...TCCGCTGCTGCCTCTGGGTACCTTGAAAAGATGCCCACCACGCACCTTTCTTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR GCA 72 bp | CGGAGCTGTCCCTGTGACCACCCCAGCCACAGGCTCTaGATGTCCTCCACGGGGGCCCTGACAGGACTGGGA | + |
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Preference number: 3 (lower is better) Translates to: RSCPCDHPSHRL*MSSTGALTGLG Trigger: TCCCAGTCCTGTCAGGGCCCCCGTGGAGGACATGCAGAGCCTGTGGCTGGGGTGGTCACAGGGACAGCTCCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR GCA 72 bp | GGCTCTCGCAGCCCTGGCACCTGTCCTGAGGTCCGATaGAGGACCCTGGATCTGAGGCCCTGGATCCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: GSRSPGTCPEVR*RTLDLRPWIPW Trigger: CCAGGGGATCCAGGGCCTCAGATCCAGGGTCCTGCATCGGACCTCAGGACAGGTGCCAGGGCTGCGAGAGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR CCA 72 bp | CCTGAGGTCCGATGCAGGACCCTGGATCTGAGGCCCTaGATCCCCTGGCTACTGCCTGCACCCAGGGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: PEVRCRTLDLRP*IPWLLPAPRGS Trigger: GCTGCCCCTGGGTGCAGGCAGTAGCCAGGGGATCCAGGGCCTCAGATCCAGGGTCCTGCATCGGACCTCAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR TCA 72 bp | TCAAGGTACCCAGAGGCAGCAGCGGAGCTGTCCCTGTaGCCACCCCAGCCACAGGCTCTGCATGTCCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: SRYPEAAAELSL*PPQPQALHVLH Trigger: GTGGAGGACATGCAGAGCCTGTGGCTGGGGTGGTCACAGGGACAGCTCCGCTGCTGCCTCTGGGTACCTTGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR-3UTR CAA 90 bp | TGTCCTGAGGTCCGATGCAGGACCCTGGATCTGAGGCCCTGGATCCCCTGGCTAGAGGCAGGGAGGCCCTaGCTATTGGGAAGAAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: CPEVRCRTLDLRPWIPWLEAGRP*LLGRKE Trigger: TTCCTTTCTTCCCAATAGCAAGGGCCTCCCTGCCTC...TAGCCAGGGGATCCAGGGCCTCAGATCCAGGGTCCTGCATCGGACCTCAGGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR TCA 72 bp | ATTCCCCAGAGAAGCAGGTCTGGCCCTGTCAGGCTCTaGGGAATGGAGGAAGAACAAGCCAGATGTGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: IPQRSRSGPVRL*GMEEEQARCAA Trigger: GGCAGCACATCTGGCTTGTTCTTCCTCCATTCCTCAGAGCCTGACAGGGCCAGACCTGCTTCTCTGGGGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR CCA 72 bp | TCAAGACCTAACCGCAGCTGGACGGCTCAAGCTGTGTaGGAGCGATGGAGTGAGGCAGAGATGAGGAAAAGG | + |
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Preference number: 3 (lower is better) Translates to: SRPNRSWTAQAV*ERWSEAEMRKR Trigger: CCTTTTCCTCATCTCTGCCTCACTCCATCGCTCCCACACAGCTTGAGCCGTCCAGCTGCGGTTAGGTCTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| 3UTR CCA 72 bp | AGAGAAGCAGGTCTGGCCCTGTCAGGCTCTGAGGAATaGAGGAAGAACAAGCCAGATGTGCTGCCTCGGAAA | + |
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Preference number: 3 (lower is better) Translates to: REAGLALSGSEE*RKNKPDVLPRK Trigger: TTTCCGAGGCAGCACATCTGGCTTGTTCTTCCTCCATTCCTCAGAGCCTGACAGGGCCAGACCTGCTTCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| CDS-3UTR TCA 90 bp | CGATCTTCAGGTTGGGCCGTTCACCCCCAGACGCTGCTCCTGGCCCCATCCGCTTGGGCCCCAGACCCCTaGCAGCCAGGGCAGGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: RSSGWAVHPQTLLLAPSAWAPDP*QPGQAC Trigger: GCAGGCCTGCCCTGGCTGTCAGGGGTCTGGGGCCCA...AGCGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAACGGCCCAACCTGAAGATCG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000236149.2 |
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| CDS-3UTR GCA 90 bp | GAGGCACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCATTCACCCCCAGACGCTaGTCCTGGCCCCATCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: EALPARSRGIIWTRCPPPFTPRR*SWPHPL Trigger: AAGCGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAA...TGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTGCCTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR CCA 90 bp | GGAGGCACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCCCCAGACGCTGCTCCTaGCCCCATCCGCTTTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: GGTSCPLQGHHLDKVPSPPRRCS*PHPLFD Trigger: ATCAAAAAGCGGATGGGGCCAGGAGCAGCGTCTGGG...GGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTGCCTCC 64% GC, longest homopolymer 8 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR CCA 90 bp | GTCGATCTTCAGGTTGGGCCGTTCACCCCCAGACGCTGCTCCTGGCCCCATCCGCAGGCCTGCTCACCTTaGCCGTGGTGTTGTCCACGA | + |
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Preference number: 4 (lower is better) Translates to: VDLQVGPFTPRRCSWPHPQACSP*PWCCPR Trigger: TCGTGGACAACACCACGGCCAAGGTGAGCAGGCCTG...CGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAACGGCCCAACCTGAAGATCGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236149.2 |
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| CDS-3UTR TCA 90 bp | TCTTCAGGTTGGGCCGTTCACCCCCAGACGCTGCTCCTGGCCCCATCCGCTTTTCAGGGAGAGAAGGGGTaGAGGCATGTGGGCCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SSGWAVHPQTLLLAPSAFQGEKG*RHVGPR Trigger: TCTGGGGCCCACATGCCTTCACCCCTTCTCTCCCTG...AAAAGCGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAACGGCCCAACCTGAAGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000236149.2 |
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| CDS-3UTR TCA 90 bp | GGGAGGCACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCGCCCCATCCGCTTTTTaGTCTCTGCAGCCATTGTCA | + |
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Preference number: 4 (lower is better) Translates to: GRHFLPAPGASSGQGALPAPSAF*SLQPLS Trigger: TGACAATGGCTGCAGAGATCAAAAAGCGGATGGGGC...GGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTGCCTCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR CCA 90 bp | ACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTGCCCCAGACGCTGCTCCTaGCCCCATCCGCTTTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: TSCPLQGHHLDKVPSPKCPRRCS*PHPLFD Trigger: ATCAAAAAGCGGATGGGGCCAGGAGCAGCGTCTGGG...GCACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR TCA 90 bp | GATCTTCAGGTTGGGCCGTTCACCCCCAGACGCTGCTCCTGGCCCCATCCGCTTCGTCATACACCACAATaGTGCCATGAGCCCCGCGAT | + |
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Preference number: 4 (lower is better) Translates to: DLQVGPFTPRRCSWPHPLRHTPQ*CHEPRD Trigger: ATCGCGGGGCTCATGGCATCATTGTGGTGTATGACG...AAGCGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAACGGCCCAACCTGAAGATC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000236149.2 |
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| CDS-3UTR TCA 90 bp | AGGGAGGCACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCGCCCCATCCGCTTTTTaGTCTCTGCAGCCATTGTCA | + |
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Preference number: 4 (lower is better) Translates to: REALPARSRGIIWTRCPPAPSAF*SLQPLS Trigger: TGACAATGGCTGCAGAGATCAAAAAGCGGATGGGGC...GGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTGCCTCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR GCA 90 bp | CTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTGCCGACACCCAGAGAGTCTaGAAATTCCTTGGCCGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LPARSRGIIWTRCPPPSADTQRV*KFLGRG Trigger: ACCACGGCCAAGGAATTTGCAGACTCTCTGGGTGTC...GGCACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| CDS-3UTR GCA 90 bp | GCACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTCAGGCTTCACAGGGGTaGTGTCGATCTTCAGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: ALPARSRGIIWTRCPPPSQASQG*CRSSGW Trigger: CCAACCTGAAGATCGACAGCACCCCTGTGAAGCCTG...ACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR TCA 90 bp | GTCGATCTTCAGGTTGGGCCGTTCACCCCCAGACGCTGCTCCTGGCCCCATCCGCCCAAATCTGCAGTTTaGTGGTTTTGCCGTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: VDLQVGPFTPRRCSWPHPPKSAV*WFCRPA Trigger: AGCTGGACGGCAAAACCATCAAACTGCAGATTTGGG...CGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAACGGCCCAACCTGAAGATCGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000236149.2 |
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| CDS-3UTR GCA 90 bp | TCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTGCCCCGCTGTGTCCCAAATCTaGAGTTTGATGGTTTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: SCPLQGHHLDKVPSPKCPAVSQI*SLMVLP Trigger: CGGCAAAACCATCAAACTGCAGATTTGGGACACAGC...GGGGCACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR CCA 90 bp | GGCACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGAGTCTGCAAATTCCTTaGCCGTGGTGTTGTCCACGA | + |
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Preference number: 4 (lower is better) Translates to: GTSCPLQGHHLDKVPSPKSLQIP*PWCCPR Trigger: TCGTGGACAACACCACGGCCAAGGAATTTGCAGACT...CTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| CDS-3UTR TCA 90 bp | AGGCACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAACCCAAATCTGCAGTTTaGTGGTTTTGCCGTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: RHFLPAPGASSGQGALPQPKSAV*WFCRPA Trigger: AGCTGGACGGCAAAACCATCAAACTGCAGATTTGGG...TTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTGCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR TCA 90 bp | ACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTGCCCCAAATCTGCAGTTTaGTGGTTTTGCCGTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: TSCPLQGHHLDKVPSPKCPKSAV*WFCRPA Trigger: AGCTGGACGGCAAAACCATCAAACTGCAGATTTGGG...GCACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR TCA 90 bp | CTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTGCCCTACCAGGAGTTTATTaGCATTCTCACTGGCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LPARSRGIIWTRCPPPSALPGVY*HSHWRS Trigger: GCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAG...GGCACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| CDS-3UTR TCA 90 bp | ACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTGCCTGCAGCCATTGTCATaGATGCCTGCTCAACATTGG | + |
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Preference number: 4 (lower is better) Translates to: TSCPLQGHHLDKVPSPKCLQPLS*MPAQHW Trigger: CCAATGTTGAGCAGGCATTCATGACAATGGCTGCAG...GCACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR TCA 90 bp | GGGAGGCACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCATTCCAGGAGTTTATTaGCATTCTCACTGGCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: GRHFLPAPGASSGQGALPIPGVY*HSHWRS Trigger: GCTACGCCAGTGAGAATGTCAATAAACTCCTGGAAT...GGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTGCCTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237438.2 |
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| CDS-3UTR GCA 90 bp | GTCGATCTTCAGGTTGGGCCGTTCACCCCCAGACGCTGCTCCTGGCCCCATCCGGCTGTGTCCCAAATCTaGAGTTTGATGGTTTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: VDLQVGPFTPRRCSWPHPAVSQI*SLMVLP Trigger: CGGCAAAACCATCAAACTGCAGATTTGGGACACAGC...CGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAACGGCCCAACCTGAAGATCGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000236149.2 |
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| CDS-3UTR TCA 90 bp | GATCTTCAGGTTGGGCCGTTCACCCCCAGACGCTGCTCCTGGCCCCATCCGCTTCTACCAGGAGTTTATTaGCATTCTCACTGGCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: DLQVGPFTPRRCSWPHPLLPGVY*HSHWRS Trigger: GCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAG...AAGCGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAACGGCCCAACCTGAAGATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236149.2 |
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| CDS-3UTR GCA 90 bp | CACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTGGCTGTGTCCCAAATCTaGAGTTTGATGGTTTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: HFLPAPGASSGQGALPQVAVSQI*SLMVLP Trigger: CGGCAAAACCATCAAACTGCAGATTTGGGACACAGC...CACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR GCA 90 bp | TCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTGCCCCGACACCCAGAGAGTCTaGAAATTCCAGGAGTTTATT | + |
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Preference number: 4 (lower is better) Translates to: SCPLQGHHLDKVPSPKCPDTQRV*KFQEFI Trigger: AATAAACTCCTGGAATTTGCAGACTCTCTGGGTGTC...GGGGCACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000237438.2 |
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| CDS-3UTR TCA 90 bp | GCAGCAGAGGCAGGGAGGCCCTTGCTATTGGGAAGAAAGGAAAGAGAAACCCAGCGTCATACACCACAATaGTGCCATGAGCCCCGCGAT | + |
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Preference number: 4 (lower is better) Translates to: AAEAGRPLLLGRKERETQRHTPQ*CHEPRD Trigger: ATCGCGGGGCTCATGGCATCATTGTGGTGTATGACG...CTGGGTTTCTCTTTCCTTTCTTCCCAATAGCAAGGGCCTCCCTGCCTCTGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| CDS-3UTR TCA 90 bp | CAAAGAAAGGTGCGTGGTGGGCATCTTTTCAAGGTACCCAGAGGCAGCAGCGGACTGCAGCCATTGTCATaGATGCCTGCTCAACATTGG | + |
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Preference number: 4 (lower is better) Translates to: QRKVRGGHLFKVPRGSSGLQPLS*MPAQHW Trigger: CCAATGTTGAGCAGGCATTCATGACAATGGCTGCAG...TCCGCTGCTGCCTCTGGGTACCTTGAAAAGATGCCCACCACGCACCTTTCTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| CDS-3UTR CAA 90 bp | ATCTTCAGGTTGGGCCGTTCACCCCCAGACGCTGCTCCTGGCCCCATCCGCTTTGCAGGCCTGCTCACCTaGGCCGTGGTGTTGTCCACG | + |
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Preference number: 5 (lower is better) Translates to: IFRLGRSPPDAAPGPIRFAGLLT*AVVLST Trigger: CGTGGACAACACCACGGCCAAGGTGAGCAGGCCTGC...AAAGCGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAACGGCCCAACCTGAAGAT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000236149.2 |
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| CDS-3UTR CAA 90 bp | CTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAAGTGCCGAGTCTGCAAATTCCTaGGCCGTGGTGTTGTCCACG | + |
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Preference number: 5 (lower is better) Translates to: LPARSRGIIWTRCPPPSAESANS*AVVLST Trigger: CGTGGACAACACCACGGCCAAGGAATTTGCAGACTC...GGCACTTGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| CDS-3UTR CAA 90 bp | GAGGCACTTCCTGCCCGCTCCAGGGGCATCATCTGGACAAGGTGCCCTCCCCCAGGCCCCATCCGCTTTTaGATCTCTGCAGCCATTGTC | + |
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Preference number: 5 (lower is better) Translates to: EALPARSRGIIWTRCPPPGPIRF*ISAAIV Trigger: GACAATGGCTGCAGAGATCAAAAAGCGGATGGGGCC...TGGGGGAGGGCACCTTGTCCAGATGATGCCCCTGGAGCGGGCAGGAAGTGCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000025804.7 ENSMUST00000237438.2 |
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| CDS-3UTR CAA 90 bp | GCAGCAGAGGCAGGGAGGCCCTTGCTATTGGGAAGAAAGGAAAGAGAAACCCAGGGCCCCATCCGCTTTTaGATCTCTGCAGCCATTGTC | + |
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Preference number: 5 (lower is better) Translates to: AAEAGRPLLLGRKERETQGPIRF*ISAAIV Trigger: GACAATGGCTGCAGAGATCAAAAAGCGGATGGGGCC...CTGGGTTTCTCTTTCCTTTCTTCCCAATAGCAAGGGCCTCCCTGCCTCTGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025804.7 |
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| CDS TCA 72 bp | AGACTGGAAACCAGGCCTGTCAGATTCCAAGCTCTTTaGCAGCCAGCCGGTAGCTTCCCCCTCCTAAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: RLETRPVRFQAL*QPAGSFPLLSP Trigger: TGGGCTTAGGAGGGGGAAGCTACCGGCTGGCTGTCAAAGAGCTTGGAATCTGACAGGCCTGGTTTCCAGTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237201.2 |
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| CDS GCA 72 bp | GGCACTTGTCTCGAGGAAGGGGACACCCAGAGAGTCTaGAAATTCCTGCGAAGGGAAGAAGAGAGAGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: GTCLEEGDTQRV*KFLRREEEREG Trigger: CCCCTCTCTCTCTTCTTCCCTTCGCAGGAATTTGCAGACTCTCTGGGTGTCCCCTTCCTCGAGACAAGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236149.2 |
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| CDS GCA 72 bp | GGCACTTGTCTCGAGGAAGGGGACACCCAGAGAGTCTaGAAATTCCAGGAGTTTATTGACATTCTCACTGGC | + |
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Preference number: 6 (lower is better) Translates to: GTCLEEGDTQRV*KFQEFIDILTG Trigger: GCCAGTGAGAATGTCAATAAACTCCTGGAATTTGCAGACTCTCTGGGTGTCCCCTTCCTCGAGACAAGTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237438.2 |
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