Pregenerated sensors for RAB19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029923Ensembl transcript IDs: ENSMUST00000031986.5
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCATCTGCCTCCTGGTTCCTGACCATTTGGCAAGAAAGCATTTCTaGCCTCTAGGTAACAGGCCTGGCTGTGACTGTTGGAAGGAGGCT | + |
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Preference number: 1 (lower is better) Translates to: SICLLVPDHLARKHF*PLGNRPGCDCWKEA Trigger: AGCCTCCTTCCAACAGTCACAGCCAGGCCTGTTACCTAGAGGCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR GCA 90 bp | TTCCACCCTTGTAGTCAGAGTGACAAAGGGCAAGCCAGTTCCATCTaGCTCCTGGTTCCTGACCATTTGGCAAGAAAGCATTTCTGGCCT | + |
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Preference number: 1 (lower is better) Translates to: FHPCSQSDKGQASSI*LLVPDHLARKHFWP Trigger: AGGCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACTGGCTTGCCCTTTGTCACTCTGACTACAAGGGTGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR TCA 90 bp | AAACTCCACTATAAAACAGCTGGATGTTGGGGAGACAGATCAGTATaGGGAGAATCCATCCTAGCCCTCTTCCTCCAGGGCCTGAAGTCC | + |
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Preference number: 1 (lower is better) Translates to: KLHYKTAGCWGDRSV*GESILALFLQGLKS Trigger: GGACTTCAGGCCCTGGAGGAAGAGGGCTAGGATGGATTCTCCTCATACTGATCTGTCTCCCCAACATCCAGCTGTTTTATAGTGGAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR CCA 90 bp | TGGAAGGAGGCTGGCTTTTCATTTCAGGCCTTCCCCAACAGTGCCTaGGCTGACTCCAAATCTAGAATGTTCCAAATACCCTCTTTGCAT | + |
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Preference number: 1 (lower is better) Translates to: WKEAGFSFQAFPNSA*ADSKSRMFQIPSLH Trigger: ATGCAAAGAGGGTATTTGGAACATTCTAGATTTGGAGTCAGCCCAGGCACTGTTGGGGAAGGCCTGAAATGAAAAGCCAGCCTCCTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR-3UTR TCA 90 bp | CAGTGGTATCCCCTTTCCTTAAGAGTCTGTACTGCCCATCAGGCTCAGCTGGGCGGAGACACTGGTGTCTaGATACCCTGGCTTTTGTGC | + |
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Preference number: 2 (lower is better) Translates to: QWYPLSLRVCTAHQAQLGGDTGV*IPWLLC Trigger: GCACAAAAGCCAGGGTATTCAGACACCAGTGTCTCC...GCCCAGCTGAGCCTGATGGGCAGTACAGACTCTTAAGGAAAGGGGATACCACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR-3UTR CCA 90 bp | TGGAAGGAGGCTGGCTTTTCATTTCAGGCCTTCCCCAACAGTGCCTGGGCTGACCACTACTGGAGACACTaGTGTCTGAATACCCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: WKEAGFSFQAFPNSAWADHYWRH*CLNTLA Trigger: AGCCAGGGTATTCAGACACCAGTGTCTCCAGTAGTG...GTCAGCCCAGGCACTGTTGGGGAAGGCCTGAAATGAAAAGCCAGCCTCCTTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR CAA 90 bp | AGCCCTCTTCCTCCAGGGCCTGAAGTCCTCACTTTAATGGAGTCCTaGAGGGCAGTGGTATCCCCTTTCCTTAAGAGTCTGTACTGCCCA | + |
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Preference number: 2 (lower is better) Translates to: SPLPPGPEVLTLMES*RAVVSPFLKSLYCP Trigger: TGGGCAGTACAGACTCTTAAGGAAAGGGGATACCACTGCCCTCAAGGACTCCATTAAAGTGAGGACTTCAGGCCCTGGAGGAAGAGGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR CAA 90 bp | GACAAAGGGCAAGCCAGTTCCATCTGCCTCCTGGTTCCTGACCATTaGGCAAGAAAGCATTTCTGGCCTCTAGGTAACAGGCCTGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: DKGQASSICLLVPDH*ARKHFWPLGNRPGC Trigger: ACAGCCAGGCCTGTTACCTAGAGGCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACTGGCTTGCCCTTTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR-3UTR CCA 90 bp | CCAGTTCCATCTGCCTCCTGGTTCCTGACCATTTGGCAAGAAAGCATTTCTGGCCCCATCAGGCTCAGCTaGGCAACACTACTGGAGACA | + |
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Preference number: 2 (lower is better) Translates to: PVPSASWFLTIWQESISGPIRLS*ATLLET Trigger: TGTCTCCAGTAGTGTTGCCCAGCTGAGCCTGATGGG...GCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR-3UTR CCA 90 bp | AGTCAGAGTGACAAAGGGCAAGCCAGTTCCATCTGCCTCCTGGTTCCTGACCATGCAAGAAAGCATTTCTaGCCTCTAGGTAACAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: SQSDKGQASSICLLVPDHARKHF*PLGNRP Trigger: AGGCCTGTTACCTAGAGGCCAGAAATGCTTTCTTGC...ATGGTCAGGAACCAGGAGGCAGATGGAACTGGCTTGCCCTTTGTCACTCTGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR CAA 90 bp | TCCAAATACCCTCTTTGCATCTTCCTGCTCCTCACTTTACTGTCTTaGTACAACAGAGACGCAAACTCCACTATAAAACAGCTGGATGTT | + |
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Preference number: 2 (lower is better) Translates to: SKYPLCIFLLLTLLS*YNRDANSTIKQLDV Trigger: AACATCCAGCTGTTTTATAGTGGAGTTTGCGTCTCTGTTGTACAAAGACAGTAAAGTGAGGAGCAGGAAGATGCAAAGAGGGTATTTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR CCA 72 bp | CCATCAGGCTCAGCTGGGCAACACTACTGGAGACACTaGTGTCTGAATACCCTGGCTTTTGTGCTGGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: PSGSAGQHYWRH*CLNTLAFVLAS Trigger: GGAGGCCAGCACAAAAGCCAGGGTATTCAGACACCAGTGTCTCCAGTAGTGTTGCCCAGCTGAGCCTGATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR GCA 72 bp | AGGGCAGTGGTATCCCCTTTCCTTAAGAGTCTGTACTaGCCATCAGGCTCAGCTGGGCAACACTACTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: RAVVSPFLKSLY*PSGSAGQHYWR Trigger: TCTCCAGTAGTGTTGCCCAGCTGAGCCTGATGGGCAGTACAGACTCTTAAGGAAAGGGGATACCACTGCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR TCA 72 bp | CAAAGGGCAAGCCAGTTCCATCTGCCTCCTGGTTCCTaGCCATTTGGCAAGAAAGCATTTCTGGCCTCTAGG | + |
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Preference number: 3 (lower is better) Translates to: QRASQFHLPPGS*PFGKKAFLASR Trigger: CCTAGAGGCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACTGGCTTGCCCTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR CCA 72 bp | CTCCTGGTTCCTGACCATTTGGCAAGAAAGCATTTCTaGCCTCTAGGTAACAGGCCTGGCTGTGACTGTTGG | + |
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Preference number: 3 (lower is better) Translates to: LLVPDHLARKHF*PLGNRPGCDCW Trigger: CCAACAGTCACAGCCAGGCCTGTTACCTAGAGGCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR GCA 72 bp | TGTAGTCAGAGTGACAAAGGGCAAGCCAGTTCCATCTaGCTCCTGGTTCCTGACCATTTGGCAAGAAAGCAT | + |
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Preference number: 3 (lower is better) Translates to: CSQSDKGQASSI*LLVPDHLARKH Trigger: ATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACTGGCTTGCCCTTTGTCACTCTGACTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR CCA 72 bp | GCTGGCTTTTCATTTCAGGCCTTCCCCAACAGTGCCTaGGCTGACTCCAAATCTAGAATGTTCCAAATACCC | + |
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Preference number: 3 (lower is better) Translates to: AGFSFQAFPNSA*ADSKSRMFQIP Trigger: GGGTATTTGGAACATTCTAGATTTGGAGTCAGCCCAGGCACTGTTGGGGAAGGCCTGAAATGAAAAGCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR GCA 72 bp | CTGACTCCAAATCTAGAATGTTCCAAATACCCTCTTTaGATCTTCCTGCTCCTCACTTTACTGTCTTTGTAC | + |
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Preference number: 3 (lower is better) Translates to: LTPNLECSKYPL*IFLLLTLLSLY Trigger: GTACAAAGACAGTAAAGTGAGGAGCAGGAAGATGCAAAGAGGGTATTTGGAACATTCTAGATTTGGAGTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR TCA 90 bp | TGGAAGGAGGCTGGCTTTTCATTTCAGGCCTTCCCCAACAGTGCCTGGGCTGACGGTAGTAGCTTTGGGTaGTGGTACGGAAGCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: WKEAGFSFQAFPNSAWADGSSFG*WYGSAP Trigger: AGGAGCGCTTCCGTACCATCACCCAAAGCTACTACC...GTCAGCCCAGGCACTGTTGGGGAAGGCCTGAAATGAAAAGCCAGCCTCCTTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR GCA 90 bp | CAGTGGTATCCCCTTTCCTTAAGAGTCTGTACTGCCCATCAGGCTCAGCTGGGCCTCTCCCCATACAGGTaGAGGCTGTTGCGGGCAATT | + |
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Preference number: 4 (lower is better) Translates to: QWYPLSLRVCTAHQAQLGLSPYR*RLLRAI Trigger: AATTGCCCGCAACAGCCTGCACCTGTATGGGGAGAG...GCCCAGCTGAGCCTGATGGGCAGTACAGACTCTTAAGGAAAGGGGATACCACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CCA 90 bp | TGGGCAACACTACTGGAGACACTGGTGTCTGAATACCCTGGCTTTTGTGCTGGCCTCTCATTGGGGACCTaGGCCACAAGAACTGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: WATLLETLVSEYPGFCAGLSLGT*ATRTGL Trigger: CAGCCCAGTTCTTGTGGCCCAGGTCCCCAATGAGAG...GCCAGCACAAAAGCCAGGGTATTCAGACACCAGTGTCTCCAGTAGTGTTGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CCA 90 bp | CCATCAGGCTCAGCTGGGCAACACTACTGGAGACACTGGTGTCTGAATACCCTGTGTTCCTGGACTCCTTaGCGGATGTCTCCAAGACAG | + |
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Preference number: 4 (lower is better) Translates to: PSGSAGQHYWRHWCLNTLCSWTP*RMSPRQ Trigger: CTGTCTTGGAGACATCCGCCAAGGAGTCCAGGAACA...CAGGGTATTCAGACACCAGTGTCTCCAGTAGTGTTGCCCAGCTGAGCCTGATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CCA 90 bp | TGGAAGGAGGCTGGCTTTTCATTTCAGGCCTTCCCCAACAGTGCCTGGGCTGACCCACAAGAACTGGGCTaGAATCCTGGGAAAGACCTT | + |
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Preference number: 4 (lower is better) Translates to: WKEAGFSFQAFPNSAWADPQELG*NPGKDL Trigger: AAGGTCTTTCCCAGGATTCCAGCCCAGTTCTTGTGG...GTCAGCCCAGGCACTGTTGGGGAAGGCCTGAAATGAAAAGCCAGCCTCCTTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CCA 90 bp | AGTCAGAGTGACAAAGGGCAAGCCAGTTCCATCTGCCTCCTGGTTCCTGACCATCTGGGCCACAAGAACTaGGCTGGAATCCTGGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: SQSDKGQASSICLLVPDHLGHKN*AGILGK Trigger: CTTTCCCAGGATTCCAGCCCAGTTCTTGTGGCCCAG...ATGGTCAGGAACCAGGAGGCAGATGGAACTGGCTTGCCCTTTGTCACTCTGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR GCA 90 bp | GGGCCTGAAGTCCTCACTTTAATGGAGTCCTTGAGGGCAGTGGTATCCCCTTTCGCTTCTCAGCCAGTGTaGAGGCATCCTCAAACAGGA | + |
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Preference number: 4 (lower is better) Translates to: GPEVLTLMESLRAVVSPFASQPV*RHPQTG Trigger: TCCTGTTTGAGGATGCCTGCACACTGGCTGAGAAGC...GAAAGGGGATACCACTGCCCTCAAGGACTCCATTAAAGTGAGGACTTCAGGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CCA 90 bp | AGTTCCATCTGCCTCCTGGTTCCTGACCATTTGGCAAGAAAGCATTTCTGGCCTAGCGGGTGCTCTCATTaGGGACCTGGGCCACAAGAA | + |
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Preference number: 4 (lower is better) Translates to: SSICLLVPDHLARKHFWPSGCSH*GPGPQE Trigger: TTCTTGTGGCCCAGGTCCCCAATGAGAGCACCCGCT...AGGCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR GCA 90 bp | AGTTCCATCTGCCTCCTGGTTCCTGACCATTTGGCAAGAAAGCATTTCTGGCCTGCCGTGTCCCACACCTaGATCTTCACTTTCTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: SSICLLVPDHLARKHFWPAVSHT*IFTFLP Trigger: CGGCAAGAAAGTGAAGATGCAGGTGTGGGACACGGC...AGGCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR TCA 90 bp | GGGCCTGAAGTCCTCACTTTAATGGAGTCCTTGAGGGCAGTGGTATCCCCTTTCCCAGATTTGAAATGCTaGACCACACATGTCTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: GPEVLTLMESLRAVVSPFPDLKC*TTHVFP Trigger: GGGGAAGACATGTGTGGTTCAGCATTTCAAATCTGG...GAAAGGGGATACCACTGCCCTCAAGGACTCCATTAAAGTGAGGACTTCAGGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CCA 90 bp | TGGGCAACACTACTGGAGACACTGGTGTCTGAATACCCTGGCTTTTGTGCTGGCTCTCATCTGATGTCCTaGATGAGCTGGAGAACTGCA | + |
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Preference number: 4 (lower is better) Translates to: WATLLETLVSEYPGFCAGSHLMS*MSWRTA Trigger: TGCAGTTCTCCAGCTCATCCAGGACATCAGATGAGA...GCCAGCACAAAAGCCAGGGTATTCAGACACCAGTGTCTCCAGTAGTGTTGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CCA 90 bp | CCCTCTTTGCATCTTCCTGCTCCTCACTTTACTGTCTTTGTACAACAGAGACGCTGGGAAAGACCTTGCTaGGCACTCTCCCCATACAGG | + |
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Preference number: 4 (lower is better) Translates to: PSLHLPAPHFTVFVQQRRWERPC*ALSPYR Trigger: CCTGTATGGGGAGAGTGCCCAGCAAGGTCTTTCCCA...GCGTCTCTGTTGTACAAAGACAGTAAAGTGAGGAGCAGGAAGATGCAAAGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR CAA 72 bp | CAAGCCAGTTCCATCTGCCTCCTGGTTCCTGACCATTaGGCAAGAAAGCATTTCTGGCCTCTAGGTAACAGG | + |
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Preference number: 4 (lower is better) Translates to: QASSICLLVPDH*ARKHFWPLGNR Trigger: CCTGTTACCTAGAGGCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACTGGCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CCA 90 bp | CCAGTTCCATCTGCCTCCTGGTTCCTGACCATTTGGCAAGAAAGCATTTCTGGCCTTCATCTATGTTCCTaGACTCCTTGGCGGATGTCT | + |
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Preference number: 4 (lower is better) Translates to: PVPSASWFLTIWQESISGLHLCS*TPWRMS Trigger: AGACATCCGCCAAGGAGTCCAGGAACATAGATGAAG...GCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR TCA 90 bp | ATCAGTATGAGGAGAATCCATCCTAGCCCTCTTCCTCCAGGGCCTGAAGTCCTCTGTAGACTCCAGATTTaGAATGCTGAACCACACATG | + |
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Preference number: 4 (lower is better) Translates to: ISMRRIHPSPLPPGPEVLCRLQI*NAEPHM Trigger: CATGTGTGGTTCAGCATTTCAAATCTGGAGTCTACA...GAGGACTTCAGGCCCTGGAGGAAGAGGGCTAGGATGGATTCTCCTCATACTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CCA 90 bp | AATGTTCCAAATACCCTCTTTGCATCTTCCTGCTCCTCACTTTACTGTCTTTGTACTGGGCTGGAATCCTaGGAAAGACCTTGCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: NVPNTLFASSCSSLYCLCTGLES*ERPCWA Trigger: TGCCCAGCAAGGTCTTTCCCAGGATTCCAGCCCAGT...ACAAAGACAGTAAAGTGAGGAGCAGGAAGATGCAAAGAGGGTATTTGGAACATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR TCA 90 bp | GATGTTTTAAGAATTCATAGTAGGCATTTCTTCCACCCTTGTAGTCAGAGTGACCTTCTCCCACAGGTCTaGTTTGTTCCCGATCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: DVLRIHSRHFFHPCSQSDLLPQV*FVPDQH Trigger: ATGCTGATCGGGAACAAATCAGACCTGTGGGAGAAG...GTCACTCTGACTACAAGGGTGGAAGAAATGCCTACTATGAATTCTTAAAACATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| 3UTR CAA 72 bp | GCTGACTCCAAATCTAGAATGTTCCAAATACCCTCTTaGCATCTTCCTGCTCCTCACTTTACTGTCTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: ADSKSRMFQIPS*HLPAPHFTVFV Trigger: TACAAAGACAGTAAAGTGAGGAGCAGGAAGATGCAAAGAGGGTATTTGGAACATTCTAGATTTGGAGTCAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS CCA 90 bp | GTGCTCTCATTGGGGACCTGGGCCACAAGAACTGGGCTGGAATCCTaGGAAAGACCTTGCTGGGCACTCTCCCCATACAGGTGCAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: VLSLGTWATRTGLES*ERPCWALSPYRCRL Trigger: CAGCCTGCACCTGTATGGGGAGAGTGCCCAGCAAGGTCTTTCCCAGGATTCCAGCCCAGTTCTTGTGGCCCAGGTCCCCAATGAGAGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CAA 90 bp | GAGTCTGTACTGCCCATCAGGCTCAGCTGGGCAACACTACTGGAGACACTGGTGATGTTCCTGGACTCCTaGGCGGATGTCTCCAAGACA | + |
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Preference number: 5 (lower is better) Translates to: ESVLPIRLSWATLLETLVMFLDS*ADVSKT Trigger: TGTCTTGGAGACATCCGCCAAGGAGTCCAGGAACAT...CACCAGTGTCTCCAGTAGTGTTGCCCAGCTGAGCCTGATGGGCAGTACAGACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS GCA 90 bp | AGGCCATGCTTCTCAGCCAGTGTGCAGGCATCCTCAAACAGGACATaGCGCTTCTCCCACAGGTCTGATTTGTTCCCGATCAGCATGATG | + |
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Preference number: 5 (lower is better) Translates to: RPCFSASVQASSNRT*RFSHRSDLFPISMM Trigger: CATCATGCTGATCGGGAACAAATCAGACCTGTGGGAGAAGCGGCATGTCCTGTTTGAGGATGCCTGCACACTGGCTGAGAAGCATGGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CAA 90 bp | CCATCAGGCTCAGCTGGGCAACACTACTGGAGACACTGGTGTCTGAATACCCTGTACAGGTGCAGGCTGTaGCGGGCAATTAACTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: PSGSAGQHYWRHWCLNTLYRCRL*RAINSF Trigger: GAAGGAGTTAATTGCCCGCAACAGCCTGCACCTGTA...CAGGGTATTCAGACACCAGTGTCTCCAGTAGTGTTGCCCAGCTGAGCCTGATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS TCA 90 bp | CCCCATACAGGTGCAGGCTGTTGCGGGCAATTAACTCCTTCGCCATaGGCACAAAGACTTCATCTATGTTCCTGGACTCCTTGGCGGATG | + |
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Preference number: 5 (lower is better) Translates to: PHTGAGCCGQLTPSP*AQRLHLCSWTPWRM Trigger: CATCCGCCAAGGAGTCCAGGAACATAGATGAAGTCTTTGTGCTCATGGCGAAGGAGTTAATTGCCCGCAACAGCCTGCACCTGTATGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CAA 90 bp | CCAGTTCCATCTGCCTCCTGGTTCCTGACCATTTGGCAAGAAAGCATTTCTGGCTGCATCTTCACTTTCTaGCCGTCTATCTCGAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: PVPSASWFLTIWQESISGCIFTF*PSISRE Trigger: CTCCCTCGAGATAGACGGCAAGAAAGTGAAGATGCA...GCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CAA 90 bp | GTACAACAGAGACGCAAACTCCACTATAAAACAGCTGGATGTTGGGGAGACAGATCCCACAGGTCTGATTaGTTCCCGATCAGCATGATG | + |
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Preference number: 5 (lower is better) Translates to: VQQRRKLHYKTAGCWGDRSHRSD*FPISMM Trigger: CATCATGCTGATCGGGAACAAATCAGACCTGTGGGA...TCTGTCTCCCCAACATCCAGCTGTTTTATAGTGGAGTTTGCGTCTCTGTTGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CAA 90 bp | AGTTCCATCTGCCTCCTGGTTCCTGACCATTTGGCAAGAAAGCATTTCTGGCCTAGCATGATGACCAAGTaGGCAGCTCCATATTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: SSICLLVPDHLARKHFWPSMMTK*AAPYFS Trigger: AGAAAAATATGGAGCTGCCAACTTGGTCATCATGCT...AGGCCAGAAATGCTTTCTTGCCAAATGGTCAGGAACCAGGAGGCAGATGGAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS-3UTR CAA 90 bp | AATGTTCCAAATACCCTCTTTGCATCTTCCTGCTCCTCACTTTACTGTCTTTGTATCCTGGGAAAGACCTaGCTGGGCACTCTCCCCATA | + |
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Preference number: 5 (lower is better) Translates to: NVPNTLFASSCSSLYCLCILGKT*LGTLPI Trigger: TATGGGGAGAGTGCCCAGCAAGGTCTTTCCCAGGAT...ACAAAGACAGTAAAGTGAGGAGCAGGAAGATGCAAAGAGGGTATTTGGAACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS GCA 72 bp | TGGGAAAGACCTTGCTGGGCACTCTCCCCATACAGGTaGAGGCTGTTGCGGGCAATTAACTCCTTCGCCATG | + |
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Preference number: 6 (lower is better) Translates to: WERPCWALSPYR*RLLRAINSFAM Trigger: CATGGCGAAGGAGTTAATTGCCCGCAACAGCCTGCACCTGTATGGGGAGAGTGCCCAGCAAGGTCTTTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS CAA 72 bp | CCTTGCTGGGCACTCTCCCCATACAGGTGCAGGCTGTaGCGGGCAATTAACTCCTTCGCCATGAGCACAAAG | + |
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Preference number: 6 (lower is better) Translates to: PCWALSPYRCRL*RAINSFAMSTK Trigger: CTTTGTGCTCATGGCGAAGGAGTTAATTGCCCGCAACAGCCTGCACCTGTATGGGGAGAGTGCCCAGCAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS GCA 72 bp | TTCTCAGCCAGTGTGCAGGCATCCTCAAACAGGACATaGCGCTTCTCCCACAGGTCTGATTTGTTCCCGATC | + |
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Preference number: 6 (lower is better) Translates to: FSASVQASSNRT*RFSHRSDLFPI Trigger: GATCGGGAACAAATCAGACCTGTGGGAGAAGCGGCATGTCCTGTTTGAGGATGCCTGCACACTGGCTGAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS CAA 90 bp | TGGGAAAGACCTTGCTGGGCACTCTCCCCATACAGGTGCAGGCTGTaGCGGGCAATTAACTCCTTCGCCATGAGCACAAAGACTTCATCT | + |
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Preference number: 6 (lower is better) Translates to: WERPCWALSPYRCRL*RAINSFAMSTKTSS Trigger: AGATGAAGTCTTTGTGCTCATGGCGAAGGAGTTAATTGCCCGCAACAGCCTGCACCTGTATGGGGAGAGTGCCCAGCAAGGTCTTTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS TCA 72 bp | ATCCTCAAACAGGACATGCCGCTTCTCCCACAGGTCTaGTTTGTTCCCGATCAGCATGATGACCAAGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: ILKQDMPLLPQV*FVPDQHDDQVG Trigger: GCCAACTTGGTCATCATGCTGATCGGGAACAAATCAGACCTGTGGGAGAAGCGGCATGTCCTGTTTGAGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS TCA 72 bp | GGTGCAGGCTGTTGCGGGCAATTAACTCCTTCGCCATaGGCACAAAGACTTCATCTATGTTCCTGGACTCCT | + |
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Preference number: 6 (lower is better) Translates to: GAGCCGQLTPSP*AQRLHLCSWTP Trigger: AGGAGTCCAGGAACATAGATGAAGTCTTTGTGCTCATGGCGAAGGAGTTAATTGCCCGCAACAGCCTGCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS CAA 72 bp | TCAAACAGGACATGCCGCTTCTCCCACAGGTCTGATTaGTTCCCGATCAGCATGATGACCAAGTTGGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: SNRTCRFSHRSD*FPISMMTKLAA Trigger: AGCTGCCAACTTGGTCATCATGCTGATCGGGAACAAATCAGACCTGTGGGAGAAGCGGCATGTCCTGTTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS TCA 72 bp | TTGGCAGCTCCATATTTTTCTATCTCGTGGATCCAGTaGGGGACAGATTCGAATGTGGACCGCCGTGTGAGA | + |
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Preference number: 6 (lower is better) Translates to: LAAPYFSISWIQ*GTDSNVDRRVR Trigger: TCTCACACGGCGGTCCACATTCGAATCTGTCCCTCACTGGATCCACGAGATAGAAAAATATGGAGCTGCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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| CDS CAA 72 bp | AGGTCTGATTTGTTCCCGATCAGCATGATGACCAAGTaGGCAGCTCCATATTTTTCTATCTCGTGGATCCAG | + |
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Preference number: 6 (lower is better) Translates to: RSDLFPISMMTK*AAPYFSISWIQ Trigger: CTGGATCCACGAGATAGAAAAATATGGAGCTGCCAACTTGGTCATCATGCTGATCGGGAACAAATCAGACCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031986.5 |
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