Pregenerated sensors for RAB17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026304Ensembl transcript IDs: ENSMUST00000027529.12, ENSMUST00000130042.2, ENSMUST00000131428.8
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTTCTCTCCCCCTGACAGTTCCCAGAACGAAAGTGGTCCAGTTATaGATGCTGCCCCAGGAGGAAGCATCTGTCCTCCCATCCCACGGA | + |
|
Preference number: 1 (lower is better) Translates to: PSLPLTVPRTKVVQL*MLPQEEASVLPSHG Trigger: TCCGTGGGATGGGAGGACAGATGCTTCCTCCTGGGGCAGCATCCATAACTGGACCACTTTCGTTCTGGGAACTGTCAGGGGGAGAGAAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR TCA 90 bp | TGCTTCTCTGCTTCATTTAGCTCTCTGTGCTGGTCACAAGGAAGCTaGAAGGGACAGCCCAGGAGGAGCAGGCACACTTGGCTCAGGGCA | + |
|
Preference number: 1 (lower is better) Translates to: CFSASFSSLCWSQGS*KGQPRRSRHTWLRA Trigger: TGCCCTGAGCCAAGTGTGCCTGCTCCTCCTGGGCTGTCCCTTTCAGCTTCCTTGTGACCAGCACAGAGAGCTAAATGAAGCAGAGAAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR GCA 90 bp | TCCGACACAGAACATGAATGGACAAAGAGGCAGCCCCGGCAGATTTaGCACAAAGACGTAGTAGCTTGGGCTGGGGACCCTCTGAAGCAC | + |
|
Preference number: 1 (lower is better) Translates to: SDTEHEWTKRQPRQI*HKDVVAWAGDPLKH Trigger: GTGCTTCAGAGGGTCCCCAGCCCAAGCTACTACGTCTTTGTGGCAAATCTGCCGGGGCTGCCTCTTTGTCCATTCATGTTCTGTGTCGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR GCA 90 bp | GGGGGACACTTCCATCCCAGCCACCCTTTCAGACTCTGTCTCTCCTaGGTCACCTCACTGAGACTTAGCACCTTGGGCTCGTTTTTCTCT | + |
|
Preference number: 1 (lower is better) Translates to: GGHFHPSHPFRLCLS*VTSLRLSTLGSFFS Trigger: AGAGAAAAACGAGCCCAAGGTGCTAAGTCTCAGTGAGGTGACGCAGGAGAGACAGAGTCTGAAAGGGTGGCTGGGATGGAAGTGTCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR TCA 90 bp | ATCCCAGCCACCCTTTCAGACTCTGTCTCTCCTGCGTCACCTCACTaGGACTTAGCACCTTGGGCTCGTTTTTCTCTTGGGCTCATCTCT | + |
|
Preference number: 1 (lower is better) Translates to: IPATLSDSVSPASPH*DLAPWARFSLGLIS Trigger: AGAGATGAGCCCAAGAGAAAAACGAGCCCAAGGTGCTAAGTCTCAGTGAGGTGACGCAGGAGAGACAGAGTCTGAAAGGGTGGCTGGGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR TCA 90 bp | CACTGGATCTTCCCTGAGACAGTTCTCATCAGCTTTGGCAAGCAGTaGTTACAGAGAAAACCAACGCCTGGAAGCCTCCAGGGCTCAAGC | + |
|
Preference number: 1 (lower is better) Translates to: HWIFPETVLISFGKQ*LQRKPTPGSLQGSS Trigger: GCTTGAGCCCTGGAGGCTTCCAGGCGTTGGTTTTCTCTGTAATCACTGCTTGCCAAAGCTGATGAGAACTGTCTCAGGGAAGATCCAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR GCA 90 bp | TCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTaGTTCTCTGCTTCATTTAGCTCTCTGTGCTGGTCACAAGGAAGC | + |
|
Preference number: 1 (lower is better) Translates to: SVLPSHGSKAFPSPC*FSASFSSLCWSQGS Trigger: GCTTCCTTGTGACCAGCACAGAGAGCTAAATGAAGCAGAGAAGCAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR GCA 90 bp | GCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATaGTGCTTCTCTGCTTCATTTAGCTCTCTGTGCTGGTCACAAGGA | + |
|
Preference number: 1 (lower is better) Translates to: ASVLPSHGSKAFPSP*CFSASFSSLCWSQG Trigger: TCCTTGTGACCAGCACAGAGAGCTAAATGAAGCAGAGAAGCAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR TCA 90 bp | GGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGTGGTCACAAGGAAGCTaGAAGGGACAGCCCAGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: GSICPPIPRIKGFSQSMLWSQGS*KGQPRR Trigger: CCTCCTGGGCTGTCCCTTTCAGCTTCCTTGTGACCA...CAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR CCA 90 bp | CCCAGGAGGAGCAGGCACACTTGGCTCAGGGCATCCAAGTATCTGGGTATCAGGGACACAGAACATGAATaGACAAAGAGGCAGCCCCGG | + |
|
Preference number: 2 (lower is better) Translates to: PRRSRHTWLRASKYLGIRDTEHE*TKRQPR Trigger: CCGGGGCTGCCTCTTTGTCCATTCATGTTCTGTGTC...CCTGATACCCAGATACTTGGATGCCCTGAGCCAAGTGTGCCTGCTCCTCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR TCA 90 bp | CCCCAGGAGGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCTTCTGGGAGCCATTTaGCACTGGATCTTCCCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: PQEEASVLPSHGSKAFPSLLGAI*HWIFPE Trigger: CTCAGGGAAGATCCAGTGTCAAATGGCTCCCAGAAG...ACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCCTCCTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR CCA 90 bp | GGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGGAGAAAACCAACGCCTaGAAGCCTCCAGGGCTCAAG | + |
|
Preference number: 2 (lower is better) Translates to: GSICPPIPRIKGFSQSMLEKTNA*KPPGLK Trigger: CTTGAGCCCTGGAGGCTTCCAGGCGTTGGTTTTCTC...CAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR TCA 90 bp | GACATGAGACAACACGGTGTTCATCTCGGGACAGGGGTTTTAGAGTCCTCAGATTGGTCACAAGGAAGCTaGAAGGGACAGCCCAGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: DMRQHGVHLGTGVLESSDWSQGS*KGQPRR Trigger: CCTCCTGGGCTGTCCCTTTCAGCTTCCTTGTGACCA...ATCTGAGGACTCTAAAACCCCTGTCCCGAGATGAACACCGTGTTGTCTCATGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR TCA 90 bp | GGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGACACTGGATCTTCCCTaGGACAGTTCTCATCAGCTT | + |
|
Preference number: 2 (lower is better) Translates to: GSICPPIPRIKGFSQSMLTLDLP*DSSHQL Trigger: AAGCTGATGAGAACTGTCTCAGGGAAGATCCAGTGT...CAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR CCA 90 bp | AAGACGTTTAATATTTGGAGAGAAGGACATGAGACAACACGGTGTTCATCTCGGAAAGTGGTCCAGTTATaGATGCTGCCCCAGGAGGAA | + |
|
Preference number: 2 (lower is better) Translates to: KTFNIWREGHETTRCSSRKVVQL*MLPQEE Trigger: TTCCTCCTGGGGCAGCATCCATAACTGGACCACTTT...CCGAGATGAACACCGTGTTGTCTCATGTCCTTCTCTCCAAATATTAAACGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR TCA 90 bp | AAGACGTTTAATATTTGGAGAGAAGGACATGAGACAACACGGTGTTCATCTCGGACACTGGATCTTCCCTaGGACAGTTCTCATCAGCTT | + |
|
Preference number: 2 (lower is better) Translates to: KTFNIWREGHETTRCSSRTLDLP*DSSHQL Trigger: AAGCTGATGAGAACTGTCTCAGGGAAGATCCAGTGT...CCGAGATGAACACCGTGTTGTCTCATGTCCTTCTCTCCAAATATTAAACGTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR CCA 90 bp | AAGACGTTTAATATTTGGAGAGAAGGACATGAGACAACACGGTGTTCATCTCGGAGTTCTCATCAGCTTTaGCAAGCAGTGATTACAGAG | + |
|
Preference number: 2 (lower is better) Translates to: KTFNIWREGHETTRCSSRSSHQL*QAVITE Trigger: CTCTGTAATCACTGCTTGCCAAAGCTGATGAGAACT...CCGAGATGAACACCGTGTTGTCTCATGTCCTTCTCTCCAAATATTAAACGTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR CAA 90 bp | CCCCAGGAGGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTGCAGCCCCGGCAGATTaGCCACAAAGACGTAGTAGC | + |
|
Preference number: 3 (lower is better) Translates to: PQEEASVLPSHGSKAFPSAAPAD*PQRRSS Trigger: GCTACTACGTCTTTGTGGCAAATCTGCCGGGGCTGC...ACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCCTCCTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR CCA 72 bp | CAGCCCCGGCAGATTTGCCACAAAGACGTAGTAGCTTaGGCTGGGGACCCTCTGAAGCACAGGCTGAGATGT | + |
|
Preference number: 3 (lower is better) Translates to: QPRQICHKDVVA*AGDPLKHRLRC Trigger: ACATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCAAGCTACTACGTCTTTGTGGCAAATCTGCCGGGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR GCA 72 bp | CAGTTCCCAGAACGAAAGTGGTCCAGTTATGGATGCTaGCCCAGGAGGAAGCATCTGTCCTCCCATCCCACG | + |
|
Preference number: 3 (lower is better) Translates to: QFPERKWSSYGC*PRRKHLSSHPT Trigger: CGTGGGATGGGAGGACAGATGCTTCCTCCTGGGGCAGCATCCATAACTGGACCACTTTCGTTCTGGGAACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR GCA 72 bp | TTCCATCCCAGCCACCCTTTCAGACTCTGTCTCTCCTaGGTCACCTCACTGAGACTTAGCACCTTGGGCTCG | + |
|
Preference number: 3 (lower is better) Translates to: FHPSHPFRLCLS*VTSLRLSTLGS Trigger: CGAGCCCAAGGTGCTAAGTCTCAGTGAGGTGACGCAGGAGAGACAGAGTCTGAAAGGGTGGCTGGGATGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR CCA 72 bp | CCGGCAGATTTGCCACAAAGACGTAGTAGCTTGGGCTaGGGACCCTCTGAAGCACAGGCTGAGATGTGTCCT | + |
|
Preference number: 3 (lower is better) Translates to: PADLPQRRSSLG*GPSEAQAEMCP Trigger: AGGACACATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCAAGCTACTACGTCTTTGTGGCAAATCTGCCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR CAA 90 bp | CCTCCAGGGCTCAAGCATAAGCCATCTCCGACACAGAACATGAATGGACAAAGAGCAGCCCCGGCAGATTaGCCACAAAGACGTAGTAGC | + |
|
Preference number: 3 (lower is better) Translates to: PPGLKHKPSPTQNMNGQRAAPAD*PQRRSS Trigger: GCTACTACGTCTTTGTGGCAAATCTGCCGGGGCTGC...TCTTTGTCCATTCATGTTCTGTGTCGGAGATGGCTTATGCTTGAGCCCTGGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR TCA 72 bp | ACCCTTTCAGACTCTGTCTCTCCTGCGTCACCTCACTaGGACTTAGCACCTTGGGCTCGTTTTTCTCTTGGG | + |
|
Preference number: 3 (lower is better) Translates to: TLSDSVSPASPH*DLAPWARFSLG Trigger: CCCAAGAGAAAAACGAGCCCAAGGTGCTAAGTCTCAGTGAGGTGACGCAGGAGAGACAGAGTCTGAAAGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR CAA 90 bp | GACATGAGACAACACGGTGTTCATCTCGGGACAGGGGTTTTAGAGTCCTCAGATCAAAGACGTAGTAGCTaGGGCTGGGGACCCTCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: DMRQHGVHLGTGVLESSDQRRSS*GWGPSE Trigger: TTCAGAGGGTCCCCAGCCCAAGCTACTACGTCTTTG...ATCTGAGGACTCTAAAACCCCTGTCCCGAGATGAACACCGTGTTGTCTCATGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR-3UTR CAA 90 bp | AGTTATGGATGCTGCCCCAGGAGGAAGCATCTGTCCTCCCATCCCACGGATCAACAGTTCTCATCAGCTTaGGCAAGCAGTGATTACAGA | + |
|
Preference number: 3 (lower is better) Translates to: SYGCCPRRKHLSSHPTDQQFSSA*ASSDYR Trigger: TCTGTAATCACTGCTTGCCAAAGCTGATGAGAACTG...TTGATCCGTGGGATGGGAGGACAGATGCTTCCTCCTGGGGCAGCATCCATAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR GCA 72 bp | CCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTaGTTCTCTGCTTCATTTAGCTCTCTGTGCTGGTCA | + |
|
Preference number: 3 (lower is better) Translates to: PSHGSKAFPSPC*FSASFSSLCWS Trigger: TGACCAGCACAGAGAGCTAAATGAAGCAGAGAAGCAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR TCA 72 bp | TTCCCTGAGACAGTTCTCATCAGCTTTGGCAAGCAGTaGTTACAGAGAAAACCAACGCCTGGAAGCCTCCAG | + |
|
Preference number: 3 (lower is better) Translates to: FPETVLISFGKQ*LQRKPTPGSLQ Trigger: CTGGAGGCTTCCAGGCGTTGGTTTTCTCTGTAATCACTGCTTGCCAAAGCTGATGAGAACTGTCTCAGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR TCA 72 bp | CAGTCTTCTGGGAGCCATTTGACACTGGATCTTCCCTaGGACAGTTCTCATCAGCTTTGGCAAGCAGTGATT | + |
|
Preference number: 3 (lower is better) Translates to: QSSGSHLTLDLP*DSSHQLWQAVI Trigger: AATCACTGCTTGCCAAAGCTGATGAGAACTGTCTCAGGGAAGATCCAGTGTCAAATGGCTCCCAGAAGACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR CCA 72 bp | TCACTGAGACTTAGCACCTTGGGCTCGTTTTTCTCTTaGGCTCATCTCTGCATTTTTCCTTGCATTGATGCC | + |
|
Preference number: 3 (lower is better) Translates to: SLRLSTLGSFFS*AHLCIFPCIDA Trigger: GGCATCAATGCAAGGAAAAATGCAGAGATGAGCCCAAGAGAAAAACGAGCCCAAGGTGCTAAGTCTCAGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR GCA 90 bp | GTAGCTTGGGCTGGGGACCCTCTGAAGCACAGGCTGAGATGTGTCCTCCGCCAGGCTGGCCAGAAGCAGTaGTGGCCTGTGGCAGCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: VAWAGDPLKHRLRCVLRQAGQKQ*WPVAAQ Trigger: CTGGGCTGCCACAGGCCAGCACTGCTTCTGGCCAGC...CTGGCGGAGGACACATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCAAGCTAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | GTAGCTTGGGCTGGGGACCCTCTGAAGCACAGGCTGAGATGTGTCCTCCGCCAGAGCCTCACCTTCCTGTaGGCGGCTGCTCCCCGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: VAWAGDPLKHRLRCVLRQSLTFL*AAAPRV Trigger: GACACGGGGAGCAGCCGCCCACAGGAAGGTGAGGCT...CTGGCGGAGGACACATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCAAGCTAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR TCA 90 bp | GTAGCTTGGGCTGGGGACCCTCTGAAGCACAGGCTGAGATGTGTCCTCCGCCAGCAGCATTGGCACCCCTaGAGTAGAGGTGGCAGACGC | + |
|
Preference number: 4 (lower is better) Translates to: VAWAGDPLKHRLRCVLRQQHWHP*SRGGRR Trigger: GCGTCTGCCACCTCTACTTCAGGGGTGCCAATGCTG...CTGGCGGAGGACACATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCAAGCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | TGGGCTGGGGACCCTCTGAAGCACAGGCTGAGATGTGTCCTCCGCCAGCTCTCCAGGTGGCAGACGCTTTaGTACTTCTCCTGGCCGGCT | + |
|
Preference number: 4 (lower is better) Translates to: WAGDPLKHRLRCVLRQLSRWQTL*YFSWPA Trigger: AGCCGGCCAGGAGAAGTACCAAAGCGTCTGCCACCT...GGAGAGCTGGCGGAGGACACATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | AGTTATGGATGCTGCCCCAGGAGGAAGCATCTGTCCTCCCATCCCACGGATCAAAGCAGTGCTGGCCTGTaGCAGCCCAGCAGCCTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: SYGCCPRRKHLSSHPTDQSSAGL*QPSSLR Trigger: GCGCAGGCTGCTGGGCTGCCACAGGCCAGCACTGCT...TTGATCCGTGGGATGGGAGGACAGATGCTTCCTCCTGGGGCAGCATCCATAACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR GCA 90 bp | TGGGCTGGGGACCCTCTGAAGCACAGGCTGAGATGTGTCCTCCGCCAGCTCTCCCCAGATCCGTTTTGTTaGCGACCAGCATCACCACCA | + |
|
Preference number: 4 (lower is better) Translates to: WAGDPLKHRLRCVLRQLSPDPFC*RPASPP Trigger: TGGTGGTGATGCTGGTCGGCAACAAAACGGATCTGG...GGAGAGCTGGCGGAGGACACATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| 3UTR CAA 72 bp | GCAGCCCCGGCAGATTTGCCACAAAGACGTAGTAGCTaGGGCTGGGGACCCTCTGAAGCACAGGCTGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: AAPADLPQRRSS*GWGPSEAQAEM Trigger: CATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCAAGCTACTACGTCTTTGTGGCAAATCTGCCGGGGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | GGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGACCGGAGGGCCAGGCTaGTCTTGCCCACAGAACTGC | + |
|
Preference number: 4 (lower is better) Translates to: GSICPPIPRIKGFSQSMLTGGPG*SCPQNC Trigger: GCAGTTCTGTGGGCAAGACCAGCCTGGCCCTCCGGT...CAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | TCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGCTTCTCTACCGGAGGGCCAGGCTaGTCTTGCCCACAGAACTGC | + |
|
Preference number: 4 (lower is better) Translates to: SVLPSHGSKAFPSPCCFSTGGPG*SCPQNC Trigger: GCAGTTCTGTGGGCAAGACCAGCCTGGCCCTCCGGT...AGAGAAGCAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | CCCAGGAGGAGCAGGCACACTTGGCTCAGGGCATCCAAGTATCTGGGTATCAGGCACCACCACCTCTCCTaGCTGGAATTCCTTCTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PRRSRHTWLRASKYLGIRHHHLS*LEFLLQ Trigger: CTGGAGAAGGAATTCCAGCCAGGAGAGGTGGTGGTG...CCTGATACCCAGATACTTGGATGCCCTGAGCCAAGTGTGCCTGCTCCTCCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR TCA 90 bp | TGCCCCAGGAGGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCACACTGCTGGGCCTTGTaGAAGGAATCCTTCCGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: CPRRKHLSSHPTDQRLFPHCWAL*KESFRV Trigger: CACTCGGAAGGATTCCTTTCACAAGGCCCAGCAGTG...TGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCCTCCTGGGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR GCA 90 bp | CATAAGCCATCTCCGACACAGAACATGAATGGACAAAGAGGCAGCCCCGGCAGAGGGCCAGGCTGGTCTTaGCCACAGAACTGCTTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: HKPSPTQNMNGQRGSPGRGPGWS*PQNCFQ Trigger: TTGGAAGCAGTTCTGTGGGCAAGACCAGCCTGGCCC...TCTGCCGGGGCTGCCTCTTTGTCCATTCATGTTCTGTGTCGGAGATGGCTTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | CTGAGACTTAGCACCTTGGGCTCGTTTTTCTCTTGGGCTCATCTCTGCATTTTTAGCAGTGCTGGCCTGTaGCAGCCCAGCAGCCTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: LRLSTLGSFFSWAHLCIFSSAGL*QPSSLR Trigger: GCGCAGGCTGCTGGGCTGCCACAGGCCAGCACTGCT...AAAAATGCAGAGATGAGCCCAAGAGAAAAACGAGCCCAAGGTGCTAAGTCTCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | GGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGCTGATGGGAGGTTCCTaGTTCAGAGCCACAGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: GSICPPIPRIKGFSQSMLLMGGS*FRATAS Trigger: TGAGGCTGTGGCTCTGAACCAGGAACCTCCCATCAG...CAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR TCA 90 bp | CCAGGAGGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCCTCTGCAGAAGCTCCTaGGCAACAGTGTTGAAGATC | + |
|
Preference number: 4 (lower is better) Translates to: PGGSICPPIPRIKGFSQSLCRSS*ATVLKI Trigger: GATCTTCAACACTGTTGCTCAGGAGCTTCTGCAGAG...GGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCCTCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR GCA 90 bp | CCAGGAGGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCTCTTGCCCACAGAACTaGTTCCAAGCAGAACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: PGGSICPPIPRIKGFSQSSCPQN*FQAEPA Trigger: AGCTGGTTCTGCTTGGAAGCAGTTCTGTGGGCAAGA...GGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCCTCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR GCA 90 bp | GAACATGAATGGACAAAGAGGCAGCCCCGGCAGATTTGCCACAAAGACGTAGTAGCTCCCCGTGTCTCCTaGTCTCTGCAGAAGCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: EHEWTKRQPRQICHKDVVAPRVS*SLQKLL Trigger: CAGGAGCTTCTGCAGAGAGCAGGAGACACGGGGAGC...TACTACGTCTTTGTGGCAAATCTGCCGGGGCTGCCTCTTTGTCCATTCATGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | TCCGACACAGAACATGAATGGACAAAGAGGCAGCCCCGGCAGATTTGCCACAAACTGATGGGAGGTTCCTaGTTCAGAGCCACAGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: SDTEHEWTKRQPRQICHKLMGGS*FRATAS Trigger: TGAGGCTGTGGCTCTGAACCAGGAACCTCCCATCAG...TTTGTGGCAAATCTGCCGGGGCTGCCTCTTTGTCCATTCATGTTCTGTGTCGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR GCA 90 bp | AAGACGTTTAATATTTGGAGAGAAGGACATGAGACAACACGGTGTTCATCTCGGGCTGGCCAGAAGCAGTaGTGGCCTGTGGCAGCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: KTFNIWREGHETTRCSSRAGQKQ*WPVAAQ Trigger: CTGGGCTGCCACAGGCCAGCACTGCTTCTGGCCAGC...CCGAGATGAACACCGTGTTGTCTCATGTCCTTCTCTCCAAATATTAAACGTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR GCA 90 bp | CTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGCTTCTCTGCTTCATCTTGCCCACAGAACTaGTTCCAAGCAGAACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LPSHGSKAFPSPCCFSASSCPQN*FQAEPA Trigger: AGCTGGTTCTGCTTGGAAGCAGTTCTGTGGGCAAGA...TGAAGCAGAGAAGCAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR GCA 90 bp | CTGAGACTTAGCACCTTGGGCTCGTTTTTCTCTTGGGCTCATCTCTGCATTTTTGCTCCCCGTGTCTCCTaGTCTCTGCAGAAGCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: LRLSTLGSFFSWAHLCIFAPRVS*SLQKLL Trigger: CAGGAGCTTCTGCAGAGAGCAGGAGACACGGGGAGC...AAAAATGCAGAGATGAGCCCAAGAGAAAAACGAGCCCAAGGTGCTAAGTCTCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | TCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGCTTCTCTAACTCTTTTCCTTCCTaGAAGGTCACTTCCCGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SVLPSHGSKAFPSPCCFSNSFPS*KVTSRS Trigger: GGAGCGGGAAGTGACCTTCCAGGAAGGAAAAGAGTT...AGAGAAGCAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | AAGACGTTTAATATTTGGAGAGAAGGACATGAGACAACACGGTGTTCATCTCGGAGCCTCACCTTCCTGTaGGCGGCTGCTCCCCGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: KTFNIWREGHETTRCSSRSLTFL*AAAPRV Trigger: GACACGGGGAGCAGCCGCCCACAGGAAGGTGAGGCT...CCGAGATGAACACCGTGTTGTCTCATGTCCTTCTCTCCAAATATTAAACGTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR GCA 90 bp | GAGCCATTTGACACTGGATCTTCCCTGAGACAGTTCTCATCAGCTTTGGCAAGCCCAGATCCGTTTTGTTaGCGACCAGCATCACCACCA | + |
|
Preference number: 4 (lower is better) Translates to: EPFDTGSSLRQFSSALASPDPFC*RPASPP Trigger: TGGTGGTGATGCTGGTCGGCAACAAAACGGATCTGG...GCTTGCCAAAGCTGATGAGAACTGTCTCAGGGAAGATCCAGTGTCAAATGGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | GACATGAGACAACACGGTGTTCATCTCGGGACAGGGGTTTTAGAGTCCTCAGATACCACCTCTCCTGGCTaGAATTCCTTCTCCAGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: DMRQHGVHLGTGVLESSDTTSPG*NSFSRS Trigger: AGACCTGGAGAAGGAATTCCAGCCAGGAGAGGTGGT...ATCTGAGGACTCTAAAACCCCTGTCCCGAGATGAACACCGTGTTGTCTCATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR TCA 90 bp | CCTCCAGGGCTCAAGCATAAGCCATCTCCGACACAGAACATGAATGGACAAAGATCGGCAAGACATTGCTaGAGTCCTGCTTCATGTACC | + |
|
Preference number: 4 (lower is better) Translates to: PPGLKHKPSPTQNMNGQRSARHC*SPASCT Trigger: GGTACATGAAGCAGGACTTCAGCAATGTCTTGCCGA...TCTTTGTCCATTCATGTTCTGTGTCGGAGATGGCTTATGCTTGAGCCCTGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR TCA 90 bp | AAGACGTTTAATATTTGGAGAGAAGGACATGAGACAACACGGTGTTCATCTCGGCAGCATTGGCACCCCTaGAGTAGAGGTGGCAGACGC | + |
|
Preference number: 4 (lower is better) Translates to: KTFNIWREGHETTRCSSRQHWHP*SRGGRR Trigger: GCGTCTGCCACCTCTACTTCAGGGGTGCCAATGCTG...CCGAGATGAACACCGTGTTGTCTCATGTCCTTCTCTCCAAATATTAAACGTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR TCA 90 bp | AGTTCTCATCAGCTTTGGCAAGCAGTGATTACAGAGAAAACCAACGCCTGGAAGCACTGCTGGGCCTTGTaGAAGGAATCCTTCCGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: SSHQLWQAVITEKTNAWKHCWAL*KESFRV Trigger: CACTCGGAAGGATTCCTTTCACAAGGCCCAGCAGTG...CTTCCAGGCGTTGGTTTTCTCTGTAATCACTGCTTGCCAAAGCTGATGAGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | CTGAGACTTAGCACCTTGGGCTCGTTTTTCTCTTGGGCTCATCTCTGCATTTTTCACCACCACCTCTCCTaGCTGGAATTCCTTCTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LRLSTLGSFFSWAHLCIFHHHLS*LEFLLQ Trigger: CTGGAGAAGGAATTCCAGCCAGGAGAGGTGGTGGTG...AAAAATGCAGAGATGAGCCCAAGAGAAAAACGAGCCCAAGGTGCTAAGTCTCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | GACATGAGACAACACGGTGTTCATCTCGGGACAGGGGTTTTAGAGTCCTCAGATAACTCTTTTCCTTCCTaGAAGGTCACTTCCCGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: DMRQHGVHLGTGVLESSDNSFPS*KVTSRS Trigger: GGAGCGGGAAGTGACCTTCCAGGAAGGAAAAGAGTT...ATCTGAGGACTCTAAAACCCCTGTCCCGAGATGAACACCGTGTTGTCTCATGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CCA 90 bp | AGTTCTCATCAGCTTTGGCAAGCAGTGATTACAGAGAAAACCAACGCCTGGAAGACCACCTCTCCTGGCTaGAATTCCTTCTCCAGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: SSHQLWQAVITEKTNAWKTTSPG*NSFSRS Trigger: AGACCTGGAGAAGGAATTCCAGCCAGGAGAGGTGGT...CTTCCAGGCGTTGGTTTTCTCTGTAATCACTGCTTGCCAAAGCTGATGAGAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS CCA 90 bp | CCTGATGGGAGGTTCCTGGTTCAGAGCCACAGCCTCACCTTCCTGTaGGCGGCTGCTCCCCGTGTCTCCTGCTCTCTGCAGAAGCTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: PDGRFLVQSHSLTFL*AAAPRVSCSLQKLL Trigger: CAGGAGCTTCTGCAGAGAGCAGGAGACACGGGGAGCAGCCGCCCACAGGAAGGTGAGGCTGTGGCTCTGAACCAGGAACCTCCCATCAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS GCA 90 bp | CCAGGCTGGTCTTGCCCACAGAACTGCTTCCAAGCAGAACCAGCTTaGTCACGTAGGGCTGGCCAGAAGCAGTGCTGGCCTGTGGCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: PGWSCPQNCFQAEPA*SRRAGQKQCWPVAA Trigger: GGCTGCCACAGGCCAGCACTGCTTCTGGCCAGCCCTACGTGAGCAAGCTGGTTCTGCTTGGAAGCAGTTCTGTGGGCAAGACCAGCCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027529.12 ENSMUST00000130042.2 ENSMUST00000131428.8 |
||
| CDS GCA 90 bp | GAGGTTCCTGGTTCAGAGCCACAGCCTCACCTTCCTGTGGGCGGCTaGTCCCCGTGTCTCCTGCTCTCTGCAGAAGCTCCTGAGCAACAG | + |
|
Preference number: 5 (lower is better) Translates to: EVPGSEPQPHLPVGG*SPCLLLSAEAPEQQ Trigger: CTGTTGCTCAGGAGCTTCTGCAGAGAGCAGGAGACACGGGGAGCAGCCGCCCACAGGAAGGTGAGGCTGTGGCTCTGAACCAGGAACCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CAA 90 bp | GTAGCTTGGGCTGGGGACCCTCTGAAGCACAGGCTGAGATGTGTCCTCCGCCAGTCGCCCAGATCCGTTTaGTTGCCGACCAGCATCACC | + |
|
Preference number: 5 (lower is better) Translates to: VAWAGDPLKHRLRCVLRQSPRSV*LPTSIT Trigger: GGTGATGCTGGTCGGCAACAAAACGGATCTGGGCGA...CTGGCGGAGGACACATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCAAGCTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS GCA 90 bp | CCTGCTTCATGTACCGGAGGGCCAGGCTGGTCTTGCCCACAGAACTaGTTCCAAGCAGAACCAGCTTGCTCACGTAGGGCTGGCCAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: PASCTGGPGWSCPQN*FQAEPACSRRAGQK Trigger: CTTCTGGCCAGCCCTACGTGAGCAAGCTGGTTCTGCTTGGAAGCAGTTCTGTGGGCAAGACCAGCCTGGCCCTCCGGTACATGAAGCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027529.12 ENSMUST00000130042.2 ENSMUST00000131428.8 |
||
| CDS-3UTR CAA 90 bp | GCTCTCTGTGCTGGTCACAAGGAAGCTGAAAGGGACAGCCCAGGAGGAGCAGGCTCGCCCAGATCCGTTTaGTTGCCGACCAGCATCACC | + |
|
Preference number: 5 (lower is better) Translates to: ALCAGHKEAERDSPGGAGSPRSV*LPTSIT Trigger: GGTGATGCTGGTCGGCAACAAAACGGATCTGGGCGA...GCCTGCTCCTCCTGGGCTGTCCCTTTCAGCTTCCTTGTGACCAGCACAGAGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS GCA 90 bp | GTGAAGAAGGCACACCCCACAGTCGGCAAGACATTGCTGAAGTCCTaGTTCATGTACCGGAGGGCCAGGCTGGTCTTGCCCACAGAACTG | + |
|
Preference number: 5 (lower is better) Translates to: VKKAHPTVGKTLLKS*FMYRRARLVLPTEL Trigger: CAGTTCTGTGGGCAAGACCAGCCTGGCCCTCCGGTACATGAAGCAGGACTTCAGCAATGTCTTGCCGACTGTGGGGTGTGCCTTCTTCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027529.12 ENSMUST00000130042.2 ENSMUST00000131428.8 |
||
| CDS-3UTR CAA 90 bp | GGAAGCATCTGTCCTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGAGGGCCAGGCTGGTCTaGCCCACAGAACTGCTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: GSICPPIPRIKGFSQSMLRARLV*PTELLP Trigger: TGGAAGCAGTTCTGTGGGCAAGACCAGCCTGGCCCT...CAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAGGACAGATGCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CAA 90 bp | CTCCCATCCCACGGATCAAAGGCTTTTCCCAGTCCATGCTGCTTCTCTGCTTCACCCAGATCCGTTTTGTaGCCGACCAGCATCACCACC | + |
|
Preference number: 5 (lower is better) Translates to: LPSHGSKAFPSPCCFSASPRSVL*PTSITT Trigger: GGTGGTGATGCTGGTCGGCAACAAAACGGATCTGGG...TGAAGCAGAGAAGCAGCATGGACTGGGAAAAGCCTTTGATCCGTGGGATGGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CAA 90 bp | TGGGCTGGGGACCCTCTGAAGCACAGGCTGAGATGTGTCCTCCGCCAGCTCTCCATGAACAGCAAGCTTTaGCTCTCTGCAAACTCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: WAGDPLKHRLRCVLRQLSMNSKL*LSANSF Trigger: AAAAGAGTTTGCAGAGAGCAAAAGCTTGCTGTTCAT...GGAGAGCTGGCGGAGGACACATCTCAGCCTGTGCTTCAGAGGGTCCCCAGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CAA 90 bp | AAGACGTTTAATATTTGGAGAGAAGGACATGAGACAACACGGTGTTCATCTCGGCCCAGATCCGTTTTGTaGCCGACCAGCATCACCACC | + |
|
Preference number: 5 (lower is better) Translates to: KTFNIWREGHETTRCSSRPRSVL*PTSITT Trigger: GGTGGTGATGCTGGTCGGCAACAAAACGGATCTGGG...CCGAGATGAACACCGTGTTGTCTCATGTCCTTCTCTCCAAATATTAAACGTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS-3UTR CAA 90 bp | GAGCCATTTGACACTGGATCTTCCCTGAGACAGTTCTCATCAGCTTTGGCAAGCATGAACAGCAAGCTTTaGCTCTCTGCAAACTCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: EPFDTGSSLRQFSSALASMNSKL*LSANSF Trigger: AAAAGAGTTTGCAGAGAGCAAAAGCTTGCTGTTCAT...GCTTGCCAAAGCTGATGAGAACTGTCTCAGGGAAGATCCAGTGTCAAATGGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS GCA 72 bp | GGTTCAGAGCCACAGCCTCACCTTCCTGTGGGCGGCTaGTCCCCGTGTCTCCTGCTCTCTGCAGAAGCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: GSEPQPHLPVGG*SPCLLLSAEAP Trigger: AGGAGCTTCTGCAGAGAGCAGGAGACACGGGGAGCAGCCGCCCACAGGAAGGTGAGGCTGTGGCTCTGAACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS CCA 72 bp | AGGTTCCTGGTTCAGAGCCACAGCCTCACCTTCCTGTaGGCGGCTGCTCCCCGTGTCTCCTGCTCTCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: RFLVQSHSLTFL*AAAPRVSCSLQ Trigger: CTGCAGAGAGCAGGAGACACGGGGAGCAGCCGCCCACAGGAAGGTGAGGCTGTGGCTCTGAACCAGGAACCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS GCA 72 bp | AGGTCACTTCCCGCTCCTCGCCCAGATCCGTTTTGTTaGCGACCAGCATCACCACCACCTCTCCTGGCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: RSLPAPRPDPFC*RPASPPPLLAG Trigger: TCCAGCCAGGAGAGGTGGTGGTGATGCTGGTCGGCAACAAAACGGATCTGGGCGAGGAGCGGGAAGTGACCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027529.12 ENSMUST00000130042.2 ENSMUST00000131428.8 |
||
| CDS GCA 72 bp | CTCACCTTCCTGTGGGCGGCTGCTCCCCGTGTCTCCTaGTCTCTGCAGAAGCTCCTGAGCAACAGTGTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: LTFLWAAAPRVS*SLQKLLSNSVE Trigger: TTCAACACTGTTGCTCAGGAGCTTCTGCAGAGAGCAGGAGACACGGGGAGCAGCCGCCCACAGGAAGGTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS GCA 72 bp | TCTTGCCCACAGAACTGCTTCCAAGCAGAACCAGCTTaGTCACGTAGGGCTGGCCAGAAGCAGTGCTGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: SCPQNCFQAEPA*SRRAGQKQCWP Trigger: AGGCCAGCACTGCTTCTGGCCAGCCCTACGTGAGCAAGCTGGTTCTGCTTGGAAGCAGTTCTGTGGGCAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027529.12 ENSMUST00000130042.2 ENSMUST00000131428.8 |
||
| CDS GCA 72 bp | AGTCCTGCTTCATGTACCGGAGGGCCAGGCTGGTCTTaGCCACAGAACTGCTTCCAAGCAGAACCAGCTTGC | + |
|
Preference number: 6 (lower is better) Translates to: SPASCTGGPGWS*PQNCFQAEPAC Trigger: GCAAGCTGGTTCTGCTTGGAAGCAGTTCTGTGGGCAAGACCAGCCTGGCCCTCCGGTACATGAAGCAGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027529.12 ENSMUST00000130042.2 ENSMUST00000131428.8 |
||
| CDS TCA 72 bp | GCCACTGCTGGGCCTTGTGAAAGGAATCCTTCCGAGTaGTGTCATAAACCAGGAGCGCAGCATTGGCACCCC | + |
|
Preference number: 6 (lower is better) Translates to: ATAGPCERNPSE*CHKPGAQHWHP Trigger: GGGGTGCCAATGCTGCGCTCCTGGTTTATGACATCACTCGGAAGGATTCCTTTCACAAGGCCCAGCAGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027529.12 ENSMUST00000130042.2 ENSMUST00000131428.8 |
||
| CDS CAA 72 bp | AAGTCCTGCTTCATGTACCGGAGGGCCAGGCTGGTCTaGCCCACAGAACTGCTTCCAAGCAGAACCAGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: KSCFMYRRARLV*PTELLPSRTSL Trigger: CAAGCTGGTTCTGCTTGGAAGCAGTTCTGTGGGCAAGACCAGCCTGGCCCTCCGGTACATGAAGCAGGACTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027529.12 ENSMUST00000130042.2 ENSMUST00000131428.8 |
||
| CDS TCA 72 bp | GCTTCAGAGATGAGGAGCCCAAGTCCAGCACCTTTGTaGAGAAGGCACACCCCACAGTCGGCAAGACATTGC | + |
|
Preference number: 6 (lower is better) Translates to: ASEMRSPSPAPL*RRHTPQSARHC Trigger: GCAATGTCTTGCCGACTGTGGGGTGTGCCTTCTTCACAAAGGTGCTGGACTTGGGCTCCTCATCTCTGAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027529.12 ENSMUST00000130042.2 ENSMUST00000131428.8 |
||
| CDS TCA 72 bp | CTCCTGCTCTCTGCAGAAGCTCCTGAGCAACAGTGTTaGAGATCTCAGACACCTGGTAGTTCAGCTTGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: LLLSAEAPEQQC*RSQTPGSSAWR Trigger: CCGCCAAGCTGAACTACCAGGTGTCTGAGATCTTCAACACTGTTGCTCAGGAGCTTCTGCAGAGAGCAGGAG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||
| CDS TCA 72 bp | CAGACACCTGGTAGTTCAGCTTGGCGGAGGTTTCCATaGACAGCAAGCTTTTGCTCTCTGCAAACTCTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: QTPGSSAWRRFP*TASFCSLQTLF Trigger: GAAAAGAGTTTGCAGAGAGCAAAAGCTTGCTGTTCATGGAAACCTCCGCCAAGCTGAACTACCAGGTGTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027529.12 ENSMUST00000131428.8 |
||