Pregenerated sensors for RAB14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026878Ensembl transcript IDs: ENSMUST00000028238.15, ENSMUST00000230657.2, ENSMUST00000230751.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCACTTTAAACTCAGCTAGAAACCAACCAAGAGAAGGGAAGAACTaGGTGAAGCAGATGCTGCCTAGAGATCTGTTTCTCTTGCAAGGC | + |
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Preference number: 1 (lower is better) Translates to: ATLNSARNQPREGKN*VKQMLPRDLFLLQG Trigger: GCCTTGCAAGAGAAACAGATCTCTAGGCAGCATCTGCTTCACTCAGTTCTTCCCTTCTCTTGGTTGGTTTCTAGCTGAGTTTAAAGTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| 3UTR GCA 90 bp | AAACACTGCCAGCACCAAGGAGTGGAGCCAGTATTACTTGTGAGCTaGTGTTGTGTCTTATTTCCGTGTGTGAAATGGAAGAGTAACATG | + |
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Preference number: 1 (lower is better) Translates to: KHCQHQGVEPVLLVS*CCVLFPCVKWKSNM Trigger: CATGTTACTCTTCCATTTCACACACGGAAATAAGACACAACAGCAGCTCACAAGTAATACTGGCTCCACTCCTTGGTGCTGGCAGTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| 3UTR CCA 90 bp | GTATTACTTGTGAGCTGCTGTTGTGTCTTATTTCCGTGTGTGAAATaGAAGAGTAACATGGTCACATATAGGTCACACTGTACAAACTGG | + |
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Preference number: 1 (lower is better) Translates to: VLLVSCCCVLFPCVK*KSNMVTYRSHCTNW Trigger: CCAGTTTGTACAGTGTGACCTATATGTGACCATGTTACTCTTCCATTTCACACACGGAAATAAGACACAACAGCAGCTCACAAGTAATAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| 3UTR-3UTR GCA 90 bp | CACAGCAATGAGCAGAGAGCATTTTATATAATGTGCTGGGGCTTACCTACGTGCGGCAGTAAAAAGTACTaGTTCCAACAGACAGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: HSNEQRAFYIMCWGLPTCGSKKY*FQQTEV Trigger: CACCTCTGTCTGTTGGAAGCAGTACTTTTTACTGCC...GCACGTAGGTAAGCCCCAGCACATTATATAAAATGCTCTCTGCTCATTGCTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| 3UTR-3UTR TCA 90 bp | CACAGCAATGAGCAGAGAGCATTTTATATAATGTGCTGGGGCTTACCTACGTGCATCTGGTCCAGAAGTTaGCCATTCCAAGATAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: HSNEQRAFYIMCWGLPTCIWSRS*PFQDKG Trigger: ACCTTTATCTTGGAATGGTCAACTTCTGGACCAGAT...GCACGTAGGTAAGCCCCAGCACATTATATAAAATGCTCTCTGCTCATTGCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| 3UTR-3UTR TCA 90 bp | TCTTCTACATTCTCTCCCCTAAGAGACAATCAACAACTTTATTTACAAAGCACAGTAAGGCATTTACACTaGCCTGCTAAACCTTTAGTC | + |
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Preference number: 2 (lower is better) Translates to: SSTFSPLRDNQQLYLQSTVRHLH*PAKPLV Trigger: GACTAAAGGTTTAGCAGGTCAGTGTAAATGCCTTAC...TGTGCTTTGTAAATAAAGTTGTTGATTGTCTCTTAGGGGAGAGAATGTAGAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230657.2 |
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| 3UTR TCA 72 bp | CAGCTAGAAACCAACCAAGAGAAGGGAAGAACTGAGTaGAGCAGATGCTGCCTAGAGATCTGTTTCTCTTGC | + |
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Preference number: 3 (lower is better) Translates to: QLETNQEKGRTE*SRCCLEICFSC Trigger: GCAAGAGAAACAGATCTCTAGGCAGCATCTGCTTCACTCAGTTCTTCCCTTCTCTTGGTTGGTTTCTAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| 3UTR TCA 72 bp | AACTCAGCTAGAAACCAACCAAGAGAAGGGAAGAACTaGGTGAAGCAGATGCTGCCTAGAGATCTGTTTCTC | + |
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Preference number: 3 (lower is better) Translates to: NSARNQPREGKN*VKQMLPRDLFL Trigger: GAGAAACAGATCTCTAGGCAGCATCTGCTTCACTCAGTTCTTCCCTTCTCTTGGTTGGTTTCTAGCTGAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| 3UTR CCA 72 bp | CACAGCAATGAGCAGAGAGCATTTTATATAATGTGCTaGGGCTTACCTACGTGCACTTCCAATGACCTCTCA | + |
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Preference number: 3 (lower is better) Translates to: HSNEQRAFYIMC*GLPTCTSNDLS Trigger: TGAGAGGTCATTGGAAGTGCACGTAGGTAAGCCCCAGCACATTATATAAAATGCTCTCTGCTCATTGCTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| 3UTR CCA 72 bp | GTGAGCTGCTGTTGTGTCTTATTTCCGTGTGTGAAATaGAAGAGTAACATGGTCACATATAGGTCACACTGT | + |
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Preference number: 3 (lower is better) Translates to: VSCCCVLFPCVK*KSNMVTYRSHC Trigger: ACAGTGTGACCTATATGTGACCATGTTACTCTTCCATTTCACACACGGAAATAAGACACAACAGCAGCTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR CCA 90 bp | TGCCAGGAGCTCTTTCCAGCATTATGTCTGTCCCCAAACACTGCCAGCACCAAGGGGGTTGGGGTTCACTaGTTAGCCGTCCTCCCTGCG | + |
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Preference number: 4 (lower is better) Translates to: CQELFPALCLSPNTASTKGVGVH*LAVLPA Trigger: CGCAGGGAGGACGGCTAACCAGTGAACCCCAACCCC...CTTGGTGCTGGCAGTGTTTGGGGACAGACATAATGCTGGAAAGAGCTCCTGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR TCA 90 bp | AAGTACTGCTTCCAACAGACAGAGGTGAAAGGTCAAATGAGGGGCCAGAGCAAATCCTCCCTGCGGGGCTaGGGGTTTGTGTTGTACACC | + |
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Preference number: 4 (lower is better) Translates to: KYCFQQTEVKGQMRGQSKSSLRG*GFVLYT Trigger: GGTGTACAACACAAACCCTCAGCCCCGCAGGGAGGA...TTTGCTCTGGCCCCTCATTTGACCTTTCACCTCTGTCTGTTGGAAGCAGTACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR CCA 90 bp | AAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAACAGACAGAGGGGGTTGGGGTTCACTaGTTAGCCGTCCTCCCTGCG | + |
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Preference number: 4 (lower is better) Translates to: KMYRRQGGSKKYCFQQTEGVGVH*LAVLPA Trigger: CGCAGGGAGGACGGCTAACCAGTGAACCCCAACCCC...CTCTGTCTGTTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR CCA 90 bp | AGTAAAAAGTACTGCTTCCAACAGACAGAGGTGAAAGGTCAAATGAGGGGCCAGCCTTCTCTCTGGGGTTaGGGTTCACTGGTTAGCCGT | + |
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Preference number: 4 (lower is better) Translates to: SKKYCFQQTEVKGQMRGQPSLWG*GSLVSR Trigger: ACGGCTAACCAGTGAACCCCAACCCCAGAGAGAAGG...CTGGCCCCTCATTTGACCTTTCACCTCTGTCTGTTGGAAGCAGTACTTTTTACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR TCA 90 bp | GGACAATCAAAGGGGGAAAGTCTAGATTTACCATGCAGGAGAGATTTATTACTCTCCTCCCTGCGGGGCTaGGGGTTTGTGTTGTACACC | + |
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Preference number: 4 (lower is better) Translates to: GQSKGESLDLPCRRDLLLSSLRG*GFVLYT Trigger: GGTGTACAACACAAACCCTCAGCCCCGCAGGGAGGA...GAGTAATAAATCTCTCCTGCATGGTAAATCTAGACTTTCCCCCTTTGATTGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR GCA 90 bp | AGTAAAAAGTACTGCTTCCAACAGACAGAGGTGAAAGGTCAAATGAGGGGCCAGCACCATGAGCGCACCTaGAGCTCCTCTATAGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: SKKYCFQQTEVKGQMRGQHHERT*SSSIVA Trigger: AGCTACTATAGAGGAGCTGCAGGTGCGCTCATGGTG...CTGGCCCCTCATTTGACCTTTCACCTCTGTCTGTTGGAAGCAGTACTTTTTACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR GCA 90 bp | TCACAAGGACAATCAAAGGGGGAAAGTCTAGATTTACCATGCAGGAGAGATTTAGTTAGCCGTCCTCCCTaGGGGGCTGAGGGTTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SQGQSKGESLDLPCRRDLVSRPP*GAEGLC Trigger: ACACAAACCCTCAGCCCCGCAGGGAGGACGGCTAAC...TAAATCTCTCCTGCATGGTAAATCTAGACTTTCCCCCTTTGATTGTCCTTGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR GCA 90 bp | AAACCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAAGTTAGCCGTCCTCCCTaGGGGGCTGAGGGTTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: KPSKMYRRQGGSKKYCFQVSRPP*GAEGLC Trigger: ACACAAACCCTCAGCCCCGCAGGGAGGACGGCTAAC...TTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR GCA 90 bp | CCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAACAGCACCATGAGCGCACCTaGAGCTCCTCTATAGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: PSKMYRRQGGSKKYCFQQHHERT*SSSIVA Trigger: AGCTACTATAGAGGAGCTGCAGGTGCGCTCATGGTG...CTGTTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR GCA 90 bp | TGCCAGGAGCTCTTTCCAGCATTATGTCTGTCCCCAAACACTGCCAGCACCAAGGGTAACATCTCTCTGTaGTTCCAAGTCTGCTTTATT | + |
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Preference number: 4 (lower is better) Translates to: CQELFPALCLSPNTASTKGNISL*FQVCFI Trigger: AATAAAGCAGACTTGGAAGCACAGAGAGATGTTACC...CTTGGTGCTGGCAGTGTTTGGGGACAGACATAATGCTGGAAAGAGCTCCTGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR CCA 90 bp | CTAAGACAGAAGCAAACCTCATCAAGAAAAATGCCACCCCTACAACAGGGAATTCCACAGCCTTCTCTCTaGGGTTGGGGTTCACTGGTT | + |
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Preference number: 4 (lower is better) Translates to: LRQKQTSSRKMPPLQQGIPQPSL*GWGSLV Trigger: AACCAGTGAACCCCAACCCCAGAGAGAAGGCTGTGG...AATTCCCTGTTGTAGGGGTGGCATTTTTCTTGATGAGGTTTGCTTCTGTCTTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR CCA 90 bp | TTAAACCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCCCTTCTCTCTGGGGTTaGGGTTCACTGGTTAGCCGT | + |
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Preference number: 4 (lower is better) Translates to: LNPVRCTEDKEAVKSTASPSLWG*GSLVSR Trigger: ACGGCTAACCAGTGAACCCCAACCCCAGAGAGAAGG...GGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGGTTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR CCA 90 bp | TTAAACCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCCCACAGCCTTCTCTCTaGGGTTGGGGTTCACTGGTT | + |
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Preference number: 4 (lower is better) Translates to: LNPVRCTEDKEAVKSTASPQPSL*GWGSLV Trigger: AACCAGTGAACCCCAACCCCAGAGAGAAGGCTGTGG...GGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGGTTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR GCA 90 bp | ATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAACAGACAGAGGTGATTGGTGAGATTCCTTaGGTCTGTCAACCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: MYRRQGGSKKYCFQQTEVIGEIP*VCQPAA Trigger: AGCAGCTGGTTGACAGACGCAAGGAATCTCACCAAT...CACCTCTGTCTGTTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR GCA 90 bp | GGACAATCAAAGGGGGAAAGTCTAGATTTACCATGCAGGAGAGATTTATTACTCATTGGTGAGATTCCTTaGGTCTGTCAACCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GQSKGESLDLPCRRDLLLIGEIP*VCQPAA Trigger: AGCAGCTGGTTGACAGACGCAAGGAATCTCACCAAT...GAGTAATAAATCTCTCCTGCATGGTAAATCTAGACTTTCCCCCTTTGATTGTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR GCA 90 bp | ATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAACAGACAGAGGTGATTCTCTCCCGTTTTTaGGCTTGCTTCAAGGAACAA | + |
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Preference number: 4 (lower is better) Translates to: MYRRQGGSKKYCFQQTEVILSRF*ACFKEQ Trigger: TTGTTCCTTGAAGCAAGCGCAAAAACGGGAGAGAAT...CACCTCTGTCTGTTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| 3UTR CAA 72 bp | TCAGGTCCAGCAGCAGTGCTCAGTTTAAATCATATATaGGTGACAAACCTATCACAAGGACAATCAAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SGPAAVLSLNHI*VTNLSQGQSKG Trigger: CCCCTTTGATTGTCCTTGTGATAGGTTTGTCACCAATATATGATTTAAACTGAGCACTGCTGCTGGACCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR GCA 90 bp | TCTTCTACATTCTCTCCCCTAAGAGACAATCAACAACTTTATTTACAAAGCACACACCATGAGCGCACCTaGAGCTCCTCTATAGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: SSTFSPLRDNQQLYLQSTHHERT*SSSIVA Trigger: AGCTACTATAGAGGAGCTGCAGGTGCGCTCATGGTG...TGTGCTTTGTAAATAAAGTTGTTGATTGTCTCTTAGGGGAGAGAATGTAGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230657.2 |
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| CDS-3UTR GCA 90 bp | CCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAACAGGGTAACATCTCTCTGTaGTTCCAAGTCTGCTTTATT | + |
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Preference number: 4 (lower is better) Translates to: PSKMYRRQGGSKKYCFQQGNISL*FQVCFI Trigger: AATAAAGCAGACTTGGAAGCACAGAGAGATGTTACC...CTGTTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR TCA 90 bp | TTAAACCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCTCAACACCAATTGTGTaGGGACAATCAGCCATAACA | + |
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Preference number: 4 (lower is better) Translates to: LNPVRCTEDKEAVKSTASSTPIV*GQSAIT Trigger: TGTTATGGCTGATTGTCCTCACACAATTGGTGTTGA...GGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGGTTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000230751.2 |
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| CDS-3UTR GCA 90 bp | TTAAACCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCCGTCTGTCAACCAGCTaGTTAAGTGGTTATATGTAC | + |
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Preference number: 4 (lower is better) Translates to: LNPVRCTEDKEAVKSTASRLSTS*LSGYMY Trigger: GTACATATAACCACTTAAGCAGCTGGTTGACAGACG...GGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGGTTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR GCA 90 bp | AGTTGCAGACCCCTTTTCTCTACCATCCAAAGTCATTTCACAGCAATGAACTTAATTCTCTCCCGTTTTTaGGCTTGCTTCAAGGAACAA | + |
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Preference number: 4 (lower is better) Translates to: SCRPLFSTIQSHFTAMNLILSRF*ACFKEQ Trigger: TTGTTCCTTGAAGCAAGCGCAAAAACGGGAGAGAAT...TAAGTTCATTGCTGTGAAATGACTTTGGATGGTAGAGAAAAGGGGTCTGCAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR CCA 90 bp | CCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAACAGAACCAGCTGCTTAAGTaGTTATATGTACTTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: PSKMYRRQGGSKKYCFQQNQLLK*LYVLLL Trigger: CAGAAGAAGTACATATAACCACTTAAGCAGCTGGTT...CTGTTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR TCA 90 bp | ACCATCCAAAGTCATTTCACAGCAATGAACTTACTGGCTACAACAGACATACTCTCAACACCAATTGTGTaGGGACAATCAGCCATAAAT | + |
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Preference number: 4 (lower is better) Translates to: TIQSHFTAMNLLATTDILSTPIV*GQSAIN Trigger: ATTTATGGCTGATTGTCCTCACACAATTGGTGTTGA...GAGTATGTCTGTTGTAGCCAGTAAGTTCATTGCTGTGAAATGACTTTGGATGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR GCA 90 bp | TCTTCTACATTCTCTCCCCTAAGAGACAATCAACAACTTTATTTACAAAGCACAATTGGTGAGATTCCTTaGGTCTGTCAACCAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: SSTFSPLRDNQQLYLQSTIGEIP*VCQPAA Trigger: AGCAGCTGGTTGACAGACGCAAGGAATCTCACCAAT...TGTGCTTTGTAAATAAAGTTGTTGATTGTCTCTTAGGGGAGAGAATGTAGAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230657.2 |
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| CDS-3UTR CCA 90 bp | CTAAGACAGAAGCAAACCTCATCAAGAAAAATGCCACCCCTACAACAGGGAATTAACCAGCTGCTTAAGTaGTTATATGTACTTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LRQKQTSSRKMPPLQQGINQLLK*LYVLLL Trigger: CAGAAGAAGTACATATAACCACTTAAGCAGCTGGTT...AATTCCCTGTTGTAGGGGTGGCATTTTTCTTGATGAGGTTTGCTTCTGTCTTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR GCA 90 bp | TCTTCTACATTCTCTCCCCTAAGAGACAATCAACAACTTTATTTACAAAGCACACGTCTGTCAACCAGCTaGTTAAGTGGTTATATGTAC | + |
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Preference number: 4 (lower is better) Translates to: SSTFSPLRDNQQLYLQSTRLSTS*LSGYMY Trigger: GTACATATAACCACTTAAGCAGCTGGTTGACAGACG...TGTGCTTTGTAAATAAAGTTGTTGATTGTCTCTTAGGGGAGAGAATGTAGAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230657.2 |
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| CDS-3UTR GCA 90 bp | TCTTCTACATTCTCTCCCCTAAGAGACAATCAACAACTTTATTTACAAAGCACAGGTAACATCTCTCTGTaGTTCCAAGTCTGCTTTATT | + |
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Preference number: 4 (lower is better) Translates to: SSTFSPLRDNQQLYLQSTGNISL*FQVCFI Trigger: AATAAAGCAGACTTGGAAGCACAGAGAGATGTTACC...TGTGCTTTGTAAATAAAGTTGTTGATTGTCTCTTAGGGGAGAGAATGTAGAAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230657.2 |
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| CDS-3UTR CCA 90 bp | TCTTCTACATTCTCTCCCCTAAGAGACAATCAACAACTTTATTTACAAAGCACAAACCAGCTGCTTAAGTaGTTATATGTACTTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: SSTFSPLRDNQQLYLQSTNQLLK*LYVLLL Trigger: CAGAAGAAGTACATATAACCACTTAAGCAGCTGGTT...TGTGCTTTGTAAATAAAGTTGTTGATTGTCTCTTAGGGGAGAGAATGTAGAAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230657.2 |
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| CDS-3UTR CAA 90 bp | AAGTACTGCTTCCAACAGACAGAGGTGAAAGGTCAAATGAGGGGCCAGAGCAAATGCGGGGCTGAGGGTTaGTGTTGTACACCAGACTCG | + |
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Preference number: 5 (lower is better) Translates to: KYCFQQTEVKGQMRGQSKCGAEG*CCTPDS Trigger: CGAGTCTGGTGTACAACACAAACCCTCAGCCCCGCA...TTTGCTCTGGCCCCTCATTTGACCTTTCACCTCTGTCTGTTGGAAGCAGTACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR CAA 90 bp | AAAGTACTGCTTCCAACAGACAGAGGTGAAAGGTCAAATGAGGGGCCAGAGCAATGCGGGGCTGAGGGTTaGTGTTGTACACCAGACTCG | + |
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Preference number: 5 (lower is better) Translates to: KVLLPTDRGERSNEGPEQCGAEG*CCTPDS Trigger: CGAGTCTGGTGTACAACACAAACCCTCAGCCCCGCA...TTGCTCTGGCCCCTCATTTGACCTTTCACCTCTGTCTGTTGGAAGCAGTACTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS GCA 90 bp | GTTATATGTACTTCTTCTGGTGATGTCATACACCATGAGCGCACCTaGAGCTCCTCTATAGTAGCTCCGTGTAACCGCTCTGAACCGCTC | + |
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Preference number: 5 (lower is better) Translates to: VICTSSGDVIHHERT*SSSIVAPCNRSEPL Trigger: GAGCGGTTCAGAGCGGTTACACGGAGCTACTATAGAGGAGCTGCAGGTGCGCTCATGGTGTATGACATCACCAGAAGAAGTACATATAAC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS CCA 90 bp | TTTGGATTGGTGAGATTCCTTGCGTCTGTCAACCAGCTGCTTAAGTaGTTATATGTACTTCTTCTGGTGATGTCATACACCATGAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: FGLVRFLASVNQLLK*LYVLLLVMSYTMSA Trigger: TGCGCTCATGGTGTATGACATCACCAGAAGAAGTACATATAACCACTTAAGCAGCTGGTTGACAGACGCAAGGAATCTCACCAATCCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028238.15 ENSMUST00000230657.2 ENSMUST00000230751.2 |
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| CDS-3UTR CAA 90 bp | CCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAACAGCAAATTCAACACCAATaGTGTGAGGACAATCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: PSKMYRRQGGSKKYCFQQQIQHQ*CEDNQP Trigger: TGGCTGATTGTCCTCACACAATTGGTGTTGAATTTG...CTGTTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR CAA 90 bp | CCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAACAGATTACAGTGTTTGGATaGGTGAGATTCCTTGCGTCT | + |
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Preference number: 5 (lower is better) Translates to: PSKMYRRQGGSKKYCFQQITVFG*VRFLAS Trigger: AGACGCAAGGAATCTCACCAATCCAAACACTGTAAT...CTGTTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR CAA 90 bp | AGTTGCAGACCCCTTTTCTCTACCATCCAAAGTCATTTCACAGCAATGAACTTACTCCCGTTTTTGCGCTaGCTTCAAGGAACAATAAGC | + |
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Preference number: 5 (lower is better) Translates to: SCRPLFSTIQSHFTAMNLLPFLR*LQGTIS Trigger: GCTTATTGTTCCTTGAAGCAAGCGCAAAAACGGGAG...TAAGTTCATTGCTGTGAAATGACTTTGGATGGTAGAGAAAAGGGGTCTGCAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR CAA 90 bp | AAACCCAGTAAGATGTACAGAAGACAAGGAGGCAGTAAAAAGTACTGCTTCCAACTCCCGTTTTTGCGCTaGCTTCAAGGAACAATAAGC | + |
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Preference number: 5 (lower is better) Translates to: KPSKMYRRQGGSKKYCFQLPFLR*LQGTIS Trigger: GCTTATTGTTCCTTGAAGCAAGCGCAAAAACGGGAG...TTGGAAGCAGTACTTTTTACTGCCTCCTTGTCTTCTGTACATCTTACTGGGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS-3UTR CAA 90 bp | ACCATCCAAAGTCATTTCACAGCAATGAACTTACTGGCTACAACAGACATACTCATTACAGTGTTTGGATaGGTGAGATTCCTTGCGTCT | + |
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Preference number: 5 (lower is better) Translates to: TIQSHFTAMNLLATTDILITVFG*VRFLAS Trigger: AGACGCAAGGAATCTCACCAATCCAAACACTGTAAT...GAGTATGTCTGTTGTAGCCAGTAAGTTCATTGCTGTGAAATGACTTTGGATGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR CAA 90 bp | AGGACAATCAAAGGGGGAAAGTCTAGATTTACCATGCAGGAGAGATTTATTACTCAAATTCAACACCAATaGTGTGAGGACAATCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: RTIKGGKSRFTMQERFITQIQHQ*CEDNQP Trigger: TGGCTGATTGTCCTCACACAATTGGTGTTGAATTTG...AGTAATAAATCTCTCCTGCATGGTAAATCTAGACTTTCCCCCTTTGATTGTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028238.15 |
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| CDS-3UTR CAA 90 bp | CTCTCCCCTAAGAGACAATCAACAACTTTATTTACAAAGCACAGCTTTCTAGAAATTACAGTGTTTGGATaGGTGAGATTCCTTGCGTCT | + |
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Preference number: 5 (lower is better) Translates to: LSPKRQSTTLFTKHSFLEITVFG*VRFLAS Trigger: AGACGCAAGGAATCTCACCAATCCAAACACTGTAAT...TTCTAGAAAGCTGTGCTTTGTAAATAAAGTTGTTGATTGTCTCTTAGGGGAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230657.2 |
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| CDS CAA 90 bp | GGTTGGGGTTCACTGGTTAGCCGTCCTCCCTGCGGGGCTGAGGGTTaGTGTTGTACACCAGACTCGGCAGCATTCAGATCCAGGCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: GWGSLVSRPPCGAEG*CCTPDSAAFRSRLP Trigger: TGGAAGCCTGGATCTGAATGCTGCCGAGTCTGGTGTACAACACAAACCCTCAGCCCCGCAGGGAGGACGGCTAACCAGTGAACCCCAACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS CAA 72 bp | TCACTGGTTAGCCGTCCTCCCTGCGGGGCTGAGGGTTaGTGTTGTACACCAGACTCGGCAGCATTCAGATCC | + |
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Preference number: 6 (lower is better) Translates to: SLVSRPPCGAEG*CCTPDSAAFRS Trigger: GGATCTGAATGCTGCCGAGTCTGGTGTACAACACAAACCCTCAGCCCCGCAGGGAGGACGGCTAACCAGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS GCA 72 bp | ACTTCTTCTGGTGATGTCATACACCATGAGCGCACCTaGAGCTCCTCTATAGTAGCTCCGTGTAACCGCTCT | + |
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Preference number: 6 (lower is better) Translates to: TSSGDVIHHERT*SSSIVAPCNRS Trigger: AGAGCGGTTACACGGAGCTACTATAGAGGAGCTGCAGGTGCGCTCATGGTGTATGACATCACCAGAAGAAGT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028238.15 ENSMUST00000230751.2 |
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| CDS CCA 72 bp | GTGAGATTCCTTGCGTCTGTCAACCAGCTGCTTAAGTaGTTATATGTACTTCTTCTGGTGATGTCATACACC | + |
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Preference number: 6 (lower is better) Translates to: VRFLASVNQLLK*LYVLLLVMSYT Trigger: GGTGTATGACATCACCAGAAGAAGTACATATAACCACTTAAGCAGCTGGTTGACAGACGCAAGGAATCTCAC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028238.15 ENSMUST00000230657.2 ENSMUST00000230751.2 |
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