Pregenerated sensors for RAB13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027935Ensembl transcript IDs: ENSMUST00000065418.7, ENSMUST00000107373.8
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCTTGGGAACCCACAGTGGAAACAGGATGTCCGTCCTTCAGGCTaGCCCATGCTGTTTTCATCACCAGTGAAAGAGTTGGGGCAAGGA | + |
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Preference number: 1 (lower is better) Translates to: VLGNPQWKQDVRPSG*PMLFSSPVKELGQG Trigger: TCCTTGCCCCAACTCTTTCACTGGTGATGAAAACAGCATGGGGCAGCCTGAAGGACGGACATCCTGTTTCCACTGTGGGTTCCCAAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR CAA 90 bp | AACCATACTAAGTGCTGCTGTTTACTGAAGCCTGGTTCAAATCCTTaGTCCTTGGGTTACTGTGTGCTCAAGGCAAGGTTCCGTCCACTC | + |
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Preference number: 2 (lower is better) Translates to: NHTKCCCLLKPGSNP*SLGYCVLKARFRPL Trigger: GAGTGGACGGAACCTTGCCTTGAGCACACAGTAACCCAAGGACAAAGGATTTGAACCAGGCTTCAGTAAACAGCAGCACTTAGTATGGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR TCA 72 bp | GTCCTCGCCGGTCTCCTTATTCCCCTCATCTCCCCTTaGGGTGCCACCACAGTTCTCCCATCTGCAATCCCT | + |
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Preference number: 3 (lower is better) Translates to: VLAGLLIPLISP*GATTVLPSAIP Trigger: AGGGATTGCAGATGGGAGAACTGTGGTGGCACCTCAAGGGGAGATGAGGGGAATAAGGAGACCGGCGAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| 3UTR GCA 72 bp | CGCCGGTCTCCTTATTCCCCTCATCTCCCCTTGAGGTaGCACCACAGTTCTCCCATCTGCAATCCCTCAGTC | + |
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Preference number: 3 (lower is better) Translates to: RRSPYSPHLPLR*HHSSPICNPSV Trigger: GACTGAGGGATTGCAGATGGGAGAACTGTGGTGGCACCTCAAGGGGAGATGAGGGGAATAAGGAGACCGGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| 3UTR CCA 72 bp | GTTCCGTCCACTCTTGTAGTCCTTGGGAACCCACAGTaGAAACAGGATGTCCGTCCTTCAGGCTGCCCCATG | + |
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Preference number: 3 (lower is better) Translates to: VPSTLVVLGNPQ*KQDVRPSGCPM Trigger: CATGGGGCAGCCTGAAGGACGGACATCCTGTTTCCACTGTGGGTTCCCAAGGACTACAAGAGTGGACGGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR-3UTR CAA 90 bp | GAGTTGGGGCAAGGAAGGGGAACCCAGCCACATTCAGGTGAACCAATATCTTGGTCCCCTCATCTCCCCTaGAGGTGCCACCACAGTTCT | + |
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Preference number: 3 (lower is better) Translates to: ELGQGRGTQPHSGEPISWSPHLP*RCHHSS Trigger: AGAACTGTGGTGGCACCTCAAGGGGAGATGAGGGGA...CCAAGATATTGGTTCACCTGAATGTGGCTGGGTTCCCCTTCCTTGCCCCAACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR CCA 72 bp | TGCTCAAGGCAAGGTTCCGTCCACTCTTGTAGTCCTTaGGAACCCACAGTGGAAACAGGATGTCCGTCCTTC | + |
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Preference number: 3 (lower is better) Translates to: CSRQGSVHSCSP*EPTVETGCPSF Trigger: GAAGGACGGACATCCTGTTTCCACTGTGGGTTCCCAAGGACTACAAGAGTGGACGGAACCTTGCCTTGAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR GCA 72 bp | AACCCACAGTGGAAACAGGATGTCCGTCCTTCAGGCTaGCCCATGCTGTTTTCATCACCAGTGAAAGAGTTG | + |
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Preference number: 3 (lower is better) Translates to: NPQWKQDVRPSG*PMLFSSPVKEL Trigger: CAACTCTTTCACTGGTGATGAAAACAGCATGGGGCAGCCTGAAGGACGGACATCCTGTTTCCACTGTGGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR GCA 72 bp | AGCCTGGTTCAAATCCTTTGTCCTTGGGTTACTGTGTaGTCAAGGCAAGGTTCCGTCCACTCTTGTAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: SLVQILCPWVTV*SRQGSVHSCSP Trigger: AGGACTACAAGAGTGGACGGAACCTTGCCTTGAGCACACAGTAACCCAAGGACAAAGGATTTGAACCAGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR GCA 72 bp | TGTCCCACATCTCCTTGGATAAACCATACTAAGTGCTaGTGTTTACTGAAGCCTGGTTCAAATCCTTTGTCC | + |
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Preference number: 3 (lower is better) Translates to: CPTSPWINHTKC*CLLKPGSNPLS Trigger: GGACAAAGGATTTGAACCAGGCTTCAGTAAACAGCAGCACTTAGTATGGTTTATCCAAGGAGATGTGGGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR GCA 72 bp | AGATGTCCCACATCTCCTTGGATAAACCATACTAAGTaGTGCTGTTTACTGAAGCCTGGTTCAAATCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: RCPTSPWINHTK*CCLLKPGSNPL Trigger: CAAAGGATTTGAACCAGGCTTCAGTAAACAGCAGCACTTAGTATGGTTTATCCAAGGAGATGTGGGACATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR CAA 72 bp | CGTCCTCGCCGGTCTCCTTATTCCCCTCATCTCCCCTaGAGGTGCCACCACAGTTCTCCCATCTGCAATCCC | + |
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Preference number: 4 (lower is better) Translates to: RPRRSPYSPHLP*RCHHSSPICNP Trigger: GGGATTGCAGATGGGAGAACTGTGGTGGCACCTCAAGGGGAGATGAGGGGAATAAGGAGACCGGCGAGGACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| CDS-3UTR TCA 90 bp | CATCTGCAATCCCTCAGTCCGACTCCCTCAGGTCTAGCCTCCAGGTTCAGGGTGCACGGGCCAGGGAACTaGAAGCCTCATCCACATTCA | + |
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Preference number: 4 (lower is better) Translates to: HLQSLSPTPSGLASRFRVHGPGN*KPHPHS Trigger: TGAATGTGGATGAGGCTTTCAGTTCCCTGGCCCGTG...CACCCTGAACCTGGAGGCTAGACCTGAGGGAGTCGGACTGAGGGATTGCAGATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| CDS-3UTR GCA 90 bp | TGCTCAAGGCAAGGTTCCGTCCACTCTTGTAGTCCTTGGGAACCCACAGTGGAAGCCAACTTCTCCGCCTaGTCTCTCTGCACCTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: CSRQGSVHSCSPWEPTVEANFSA*SLCTCR Trigger: GCGGCAGGTGCAGAGAGAGCAGGCGGAGAAGTTGGC...TTCCACTGTGGGTTCCCAAGGACTACAAGAGTGGACGGAACCTTGCCTTGAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| CDS-3UTR TCA 90 bp | TCATCTCCCCTTGAGGTGCCACCACAGTTCTCCCATCTGCAATCCCTCAGTCCGCACGGGCCAGGGAACTaGAAGCCTCATCCACATTCA | + |
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Preference number: 4 (lower is better) Translates to: SSPLEVPPQFSHLQSLSPHGPGN*KPHPHS Trigger: TGAATGTGGATGAGGCTTTCAGTTCCCTGGCCCGTG...CGGACTGAGGGATTGCAGATGGGAGAACTGTGGTGGCACCTCAAGGGGAGATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| CDS-3UTR GCA 90 bp | ACCAGGAATGGAGAGATCAGCATGTTGACTTTAATGTTGGACTGTCCAAGGCCTTCCGCCTGCTCTCTCTaGACCTGCCGCTTGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TRNGEISMLTLMLDCPRPSACSL*TCRLAS Trigger: GGAGGCCAAGCGGCAGGTGCAGAGAGAGCAGGCGGA...AGGCCTTGGACAGTCCAACATTAAAGTCAACATGCTGATCTCTCCATTCCTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| CDS-3UTR GCA 90 bp | TTTCCTCTTCTCAAATCCCTTCTGTTCACCTTTCACATCCTTGGTTCCTCCCCCGCCAACTTCTCCGCCTaGTCTCTCTGCACCTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FPLLKSLLFTFHILGSSPANFSA*SLCTCR Trigger: GCGGCAGGTGCAGAGAGAGCAGGCGGAGAAGTTGGC...GGGGGAGGAACCAAGGATGTGAAAGGTGAACAGAAGGGATTTGAGAAGAGGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| CDS-3UTR GCA 90 bp | CATCTGCAATCCCTCAGTCCGACTCCCTCAGGTCTAGCCTCCAGGTTCAGGGTGATGTTTTCAGGCCAGTaGTTGAGGGCTTACTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: HLQSLSPTPSGLASRFRVMFSGQ*LRAYCW Trigger: CCAACAGTAAGCCCTCAAGCACTGGCCTGAAAACAT...CACCCTGAACCTGGAGGCTAGACCTGAGGGAGTCGGACTGAGGGATTGCAGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| CDS-3UTR TCA 90 bp | CCCCTTGAGGTGCCACCACAGTTCTCCCATCTGCAATCCCTCAGTCCGACTCCCCAGAGGCATTCTCTTTaGTGCTTTTCATCCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: PLEVPPQFSHLQSLSPTPQRHSL*CFSSSS Trigger: AGAACTGGATGAAAAGCATCAAAGAGAATGCCTCTG...GGGAGTCGGACTGAGGGATTGCAGATGGGAGAACTGTGGTGGCACCTCAAGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| CDS-3UTR TCA 90 bp | CATCTGCAATCCCTCAGTCCGACTCCCTCAGGTCTAGCCTCCAGGTTCAGGGTGCAGAGGCATTCTCTTTaGTGCTTTTCATCCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: HLQSLSPTPSGLASRFRVQRHSL*CFSSSS Trigger: AGAACTGGATGAAAAGCATCAAAGAGAATGCCTCTG...CACCCTGAACCTGGAGGCTAGACCTGAGGGAGTCGGACTGAGGGATTGCAGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| CDS-3UTR GCA 90 bp | CTACATCAGAATCAAAGATGTCCCACATCTCCTTGGATAAACCATACTAAGTGCTCCGCCTGCTCTCTCTaGACCTGCCGCTTGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: LHQNQRCPTSPWINHTKCSACSL*TCRLAS Trigger: GGAGGCCAAGCGGCAGGTGCAGAGAGAGCAGGCGGA...GCACTTAGTATGGTTTATCCAAGGAGATGTGGGACATCTTTGATTCTGATGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| CDS-3UTR CCA 90 bp | ACCCTGAACCAGGAATGGAGAGATCAGCATGTTGACTTTAATGTTGGACTGTCCGTCTTGAATCGTTCTTaGCCAGCCGTGTCCCACACT | + |
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Preference number: 4 (lower is better) Translates to: TLNQEWRDQHVDFNVGLSVLNRS*PAVSHT Trigger: AGTGTGGGACACGGCTGGCCAAGAACGATTCAAGAC...GGACAGTCCAACATTAAAGTCAACATGCTGATCTCTCCATTCCTGGTTCAGGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065418.7 |
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| 3UTR CAA 72 bp | TGCTGTTTACTGAAGCCTGGTTCAAATCCTTTGTCCTaGGGTTACTGTGTGCTCAAGGCAAGGTTCCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: CCLLKPGSNPLS*GYCVLKARFRP Trigger: TGGACGGAACCTTGCCTTGAGCACACAGTAACCCAAGGACAAAGGATTTGAACCAGGCTTCAGTAAACAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| 3UTR CAA 72 bp | AAGTGCTGCTGTTTACTGAAGCCTGGTTCAAATCCTTaGTCCTTGGGTTACTGTGTGCTCAAGGCAAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: KCCCLLKPGSNP*SLGYCVLKARF Trigger: GAACCTTGCCTTGAGCACACAGTAACCCAAGGACAAAGGATTTGAACCAGGCTTCAGTAAACAGCAGCACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| CDS-3UTR CAA 90 bp | GTGCCGAGCCAGCCTCTCAGGACCCTAACCCTGAACCAGGAATGGAGAGATCAGTGTCTTGAATCGTTCTaGGCCAGCCGTGTCCCACAC | + |
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Preference number: 5 (lower is better) Translates to: VPSQPLRTLTLNQEWRDQCLESF*ASRVPH Trigger: GTGTGGGACACGGCTGGCCAAGAACGATTCAAGACA...CTGATCTCTCCATTCCTGGTTCAGGGTTAGGGTCCTGAGAGGCTGGCTCGGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065418.7 |
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| CDS-3UTR CAA 90 bp | CGGTCTCCTTATTCCCCTCATCTCCCCTTGAGGTGCCACCACAGTTCTCCCATCCAGCCTAACAAGCACTaGTTCTTCTTCTTGTCAGAT | + |
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Preference number: 5 (lower is better) Translates to: RSPYSPHLPLRCHHSSPIQPNKH*FFFLSD Trigger: ATCTGACAAGAAGAAGAACAAGTGCTTGTTAGGCTG...GATGGGAGAACTGTGGTGGCACCTCAAGGGGAGATGAGGGGAATAAGGAGACCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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| CDS-3UTR CAA 90 bp | CTGTGTGCTCAAGGCAAGGTTCCGTCCACTCTTGTAGTCCTTGGGAACCCACAGCAGCCTAACAAGCACTaGTTCTTCTTCTTGTCAGAT | + |
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Preference number: 5 (lower is better) Translates to: LCAQGKVPSTLVVLGNPQQPNKH*FFFLSD Trigger: ATCTGACAAGAAGAAGAACAAGTGCTTGTTAGGCTG...CTGTGGGTTCCCAAGGACTACAAGAGTGGACGGAACCTTGCCTTGAGCACACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107373.8 |
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| CDS GCA 72 bp | ACTTGTTCTTCTTCTTGTCAGATGTTTTCAGGCCAGTaGTTGAGGGCTTACTGTTGGTTCCCGATCTCCGGC | + |
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Preference number: 6 (lower is better) Translates to: TCSSSCQMFSGQ*LRAYCWFPISG Trigger: GCCGGAGATCGGGAACCAACAGTAAGCCCTCAAGCACTGGCCTGAAAACATCTGACAAGAAGAAGAACAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065418.7 ENSMUST00000107373.8 |
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