RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAB11FIP5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051343

Ensembl transcript IDs: ENSMUST00000060837.10, ENSMUST00000204087.2

Found 411 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCCAGAGCAGAGGCAGGATGGGGAGGGGTGCAGAGAGTCACCATaGGAGCAGGCTTGCCCTACTCAGGTGAGAGCAGTCAGTGGCGGG +
Preference number: 1 (lower is better)
Translates to: QPEQRQDGEGCRESP*EQACPTQVRAVSGG
Trigger: CCCGCCACTGACTGCTCTCACCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCTGCCTCTGCTCTGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 90 bp TTTTACCAGGATGCTCCAAATAAGGGTCAAGGGAGGACCAGGAAGTaGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTGGCCAGAGCC +
Preference number: 1 (lower is better)
Translates to: FYQDAPNKGQGRTRK*EGGLGHLQSRLARA
Trigger: GGCTCTGGCCAACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGACCCTTATTTGGAGCATCCTGGTAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 90 bp AACCCTGGCCTCAGTTCAGGACCTCTCTGCAGGACACCCCTGCCCTaGCCATGTAGAGAAGCCAAACAGCAAGGATGGATGAAAGATGAG +
Preference number: 1 (lower is better)
Translates to: NPGLSSGPLCRTPLP*PCREAKQQGWMKDE
Trigger: CTCATCTTTCATCCATCCTTGCTGTTTGGCTTCTCTACATGGCCAGGGCAGGGGTGTCCTGCAGAGAGGTCCTGAACTGAGGCCAGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 90 bp GGATCAGACAATGAACAAAACCCTGGCCTCAGTTCAGGACCTCTCTaGAGGACACCCCTGCCCTGGCCATGTAGAGAAGCCAAACAGCAA +
Preference number: 1 (lower is better)
Translates to: GSDNEQNPGLSSGPL*RTPLPWPCREAKQQ
Trigger: TTGCTGTTTGGCTTCTCTACATGGCCAGGGCAGGGGTGTCCTGCAGAGAGGTCCTGAACTGAGGCCAGGGTTTTGTTCATTGTCTGATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 90 bp CAGGAGTTTCAACTAGGAGGACAAAGGGCAGAGCAGAGCTGTGCCTaGTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGAT +
Preference number: 1 (lower is better)
Translates to: QEFQLGGQRAEQSCA*LLPVWLHSAVCGKD
Trigger: ATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACAGCTCTGCTCTGCCCTTTGTCCTCCTAGTTGAAACTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 90 bp TGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATaGACAAAACCCTGGCCTCAGTTCAGGACCTCTCTGCAGGACACC +
Preference number: 1 (lower is better)
Translates to: CLSGCTLQYVVRIRQ*TKPWPQFRTSLQDT
Trigger: GGTGTCCTGCAGAGAGGTCCTGAACTGAGGCCAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 90 bp GGAGGACAAAGGGCAGAGCAGAGCTGTGCCTGCTTGCTGCCTGTCTaGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAA +
Preference number: 1 (lower is better)
Translates to: GGQRAEQSCACLLPV*LHSAVCGKDQTMNK
Trigger: TTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACAGCTCTGCTCTGCCCTTTGTCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 90 bp CACCCCTGCCCTGGCCATGTAGAGAAGCCAAACAGCAAGGATGGATaGAAGATGAGAGAAGGGCTGGGACTAATTAAAGCCCAGAGGAAG +
Preference number: 1 (lower is better)
Translates to: HPCPGHVEKPNSKDG*KMREGLGLIKAQRK
Trigger: CTTCCTCTGGGCTTTAATTAGTCCCAGCCCTTCTCTCATCTTTCATCCATCCTTGCTGTTTGGCTTCTCTACATGGCCAGGGCAGGGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 90 bp AAGCTAGAAGCTGGACCACAGAGCAGATACCTGACTTCACTTGAATaGACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCAG +
Preference number: 1 (lower is better)
Translates to: KLEAGPQSRYLTSLE*TSAKPGKTGGIGEQ
Trigger: CTGCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAGTCAGGTATCTGCTCTGTGGTCCAGCTTCTAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 90 bp CATTTTCCTAAGCTCAGGTGTCTCCTAAAGCAGAATGAAGCCTCCTaGTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGG +
Preference number: 1 (lower is better)
Translates to: HFPKLRCLLKQNEAS*FQTNPLVQHNWDPR
Trigger: CCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCTGAGCTTAGGAAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 90 bp TGGTTTCCAAATGTTCTGAGCCCACAGCAGCACAGTTTTGGCATCTaGCGAGTGTTAACAGACATGAATGGAGGCCTGGTCCACAAAACA +
Preference number: 1 (lower is better)
Translates to: WFPNVLSPQQHSFGI*RVLTDMNGGLVHKT
Trigger: TGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAACACTCGTCAGATGCCAAAACTGTGCTGCTGTGGGCTCAGAACATTTGGAAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 90 bp TACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGTTTAATTaGTTTCCAAATGTTCTGAGCCCACAGCAGCACAGTTTTGGCATC +
Preference number: 1 (lower is better)
Translates to: YIQRLLSSPTKGTFN*FPNVLSPQQHSFGI
Trigger: GATGCCAAAACTGTGCTGCTGTGGGCTCAGAACATTTGGAAACCAATTAAACGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CAA 90 bp GAGGCAGGATGGGGAGGGGTGCAGAGAGTCACCATGAGAGCAGGCTaGCCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGG +
Preference number: 2 (lower is better)
Translates to: EAGWGGVQRVTMRAG*PYSGESSQWRALHR
Trigger: CCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCTGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR TCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGGGGCAGGGGGCAGCTaGGGAATAGGCACATACCAC +
Preference number: 2 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLGAGGS*GIGTYH
Trigger: GTGGTATGTGCCTATTCCTCAGCTGCCCCCTGCCCC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR TCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGGAGTGGGAGGGTCTaGAGAGGGGCAGGGGGCAGC +
Preference number: 2 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQWSGRV*RGAGGS
Trigger: GCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCA...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR GCA 90 bp GACATGGAGTGGGAGGGTCTGAAGAGGGGCAGGGGGCAGCTGAGGAATAGGCACAGGAGACCCTCCAGGTaGCAGAAGGCAATGGAGATG +
Preference number: 2 (lower is better)
Translates to: DMEWEGLKRGRGQLRNRHRRPSR*QKAMEM
Trigger: CATCTCCATTGCCTTCTGGCACCTGGAGGGTCTCCT...GTGCCTATTCCTCAGCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCATGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGGACCCAAGGCTCCAGTaGGAGTTCAAAGAGCCCCTT +
Preference number: 2 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRDPRLQ*EFKEPL
Trigger: AAGGGGCTCTTTGAACTCCCACTGGAGCCTTGGGTC...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CCA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACTACTGGGACATGGAGTaGGAGGGTCTGAAGAGGGGC +
Preference number: 2 (lower is better)
Translates to: GTPWPERHLHPEALVLTHYWDME*EGLKRG
Trigger: GCCCCTCTTCAGACCCTCCCACTCCATGTCCCAGTA...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGTACTGGGACATGGAGTaGGAGGGTCTGAAGAGGGGC +
Preference number: 2 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTYWDME*EGLKRG
Trigger: GCCCCTCTTCAGACCCTCCCACTCCATGTCCCAGTA...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGACCTCCCACCACTACTaGGACATGGAGTGGGAGGGT +
Preference number: 2 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTTSHHY*DMEWEG
Trigger: ACCCTCCCACTCCATGTCCCAGTAGTGGTGGGAGGT...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR TCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACCAGCCTCATGGGGTaGGCTGTGCTGTCAACAGTG +
Preference number: 2 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGTSLMG*AVLSTV
Trigger: CACTGTTGACAGCACAGCTCACCCCATGAGGCTGGT...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR GCA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCAAGGAGACCCTCCAGGTaGCAGAAGGCAATGGAGATG +
Preference number: 2 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPRRPSR*QKAMEM
Trigger: CATCTCCATTGCCTTCTGGCACCTGGAGGGTCTCCT...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CAA 90 bp GAGTTTCAACTAGGAGGACAAAGGGCAGAGCAGAGCTGTGCCTGCTaGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAG +
Preference number: 2 (lower is better)
Translates to: EFQLGGQRAEQSCAC*LPVWLHSAVCGKDQ
Trigger: CTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACAGCTCTGCTCTGCCCTTTGTCCTCCTAGTTGAAACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR TCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCACCAGCCTCATGGGGTaGGCTGTGCTGTCAACAGTG +
Preference number: 2 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPTSLMG*AVLSTV
Trigger: CACTGTTGACAGCACAGCTCACCCCATGAGGCTGGT...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCACCTCCCACCACTACTaGGACATGGAGTGGGAGGGT +
Preference number: 2 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVTSHHY*DMEWEG
Trigger: ACCCTCCCACTCCATGTCCCAGTAGTGGTGGGAGGT...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CAA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATaGGTGAGCAGGAGGGACTGTACAACAAGGACAGAACAGCTGGAG +
Preference number: 2 (lower is better)
Translates to: LHLNALQPSQARQEG*VSRRDCTTRTEQLE
Trigger: CTCCAGCTGTTCTGTCCTTGTTGTACAGTCCCTCCTGCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGGAGGGGACACCATaGCCAGAGAGACATCTACAT +
Preference number: 2 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPREGTP*PERHLH
Trigger: ATGTAGATGTCTCTCTGGCCATGGTGTCCCCTCCCT...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAACAAGGACAGAACAGCTaGAGAGCCACGGGCATTTTC +
Preference number: 2 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQQGQNS*RATGIF
Trigger: GAAAATGCCCGTGGCTCTCCAGCTGTTCTGTCCTTG...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR TCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCAAGAGGAGAAACAAATaGCCAGCCTCATGGGGTGAG +
Preference number: 2 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVKRRNK*PASWGE
Trigger: CTCACCCCATGAGGCTGGTCATTTGTTTCTCCTCTT...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR TCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCAAGAGGAGAAACAAATaGCCAGCCTCATGGGGTGAG +
Preference number: 2 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPKRRNK*PASWGE
Trigger: CTCACCCCATGAGGCTGGTCATTTGTTTCTCCTCTT...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR GCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCACCTGGTTGTCTACAGTaGACAGAAAAGCAAGCAGCT +
Preference number: 2 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPPGCLQ*TEKQAA
Trigger: AGCTGCTTGCTTTTCTGTGCACTGTAGACAACCAGG...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CAA 90 bp GGGAGGGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTaGTCCTCACCCACAAAAGGCACGTTTAATTGGTTTCCAAATGTT +
Preference number: 2 (lower is better)
Translates to: GRGHHGQRDIYIQRL*SSPTKGTFNWFPNV
Trigger: AACATTTGGAAACCAATTAAACGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCCCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR GCA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGAGGCTGAAGTGTAGGTaGCCTGGTTGTCTACAGTGC +
Preference number: 2 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLRLKCR*PGCLQC
Trigger: GCACTGTAGACAACCAGGGCACCTACACTTCAGCCT...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR GCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCACCACCCTGTGTACATaGTCTAGACAGAGAGACAAG +
Preference number: 2 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVTTLCT*SRQRDK
Trigger: CTTGTCTCTCTGTCTAGAGCATGTACACAGGGTGGT...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAAAAGGCACGTTTAATTaGTTTCCAAATGTTCTGAGC +
Preference number: 2 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLKGTFN*FPNVLS
Trigger: GCTCAGAACATTTGGAAACCAATTAAACGTGCCTTT...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 72 bp GAGAGTCACCATGAGAGCAGGCTTGCCCTACTCAGGTaGGAGCAGTCAGTGGCGGGCACTACACAGGTCCTC +
Preference number: 3 (lower is better)
Translates to: ESHHESRLALLR*EQSVAGTTQVL
Trigger: GAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CAA 90 bp GTACTTCTCGGGGTAGTAAACAGCGTGGTCCACAGCCCCCTTTCAGGACCCTCAACCATGAGAGCAGGCTaGCCCTACTCAGGTGAGAGC +
Preference number: 3 (lower is better)
Translates to: VLLGVVNSVVHSPLSGPSTMRAG*PYSGES
Trigger: GCTCTCACCTGAGTAGGGCAAGCCTGCTCTCATGGT...TGAGGGTCCTGAAAGGGGGCTGTGGACCACGCTGTTTACTACCCCGAGAAGTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 72 bp CTGGCCTCAGTTCAGGACCTCTCTGCAGGACACCCCTaGCCTGGCCATGTAGAGAAGCCAAACAGCAAGGAT +
Preference number: 3 (lower is better)
Translates to: LASVQDLSAGHP*PGHVEKPNSKD
Trigger: ATCCTTGCTGTTTGGCTTCTCTACATGGCCAGGGCAGGGGTGTCCTGCAGAGAGGTCCTGAACTGAGGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 72 bp CCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTaGCAGAAGGCAATGGAGATGAAGAGTTGGTCAAGA +
Preference number: 3 (lower is better)
Translates to: PSLSQWPRRPSR*QKAMEMKSWSR
Trigger: TCTTGACCAACTCTTCATCTCCATTGCCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 72 bp CAACTAGGAGGACAAAGGGCAGAGCAGAGCTGTGCCTaGTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGT +
Preference number: 3 (lower is better)
Translates to: QLGGQRAEQSCA*LLPVWLHSAVC
Trigger: ACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACAGCTCTGCTCTGCCCTTTGTCCTCCTAGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 72 bp CTCAGTTCAGGACCTCTCTGCAGGACACCCCTGCCCTaGCCATGTAGAGAAGCCAAACAGCAAGGATGGATG +
Preference number: 3 (lower is better)
Translates to: LSSGPLCRTPLP*PCREAKQQGWM
Trigger: CATCCATCCTTGCTGTTTGGCTTCTCTACATGGCCAGGGCAGGGGTGTCCTGCAGAGAGGTCCTGAACTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 72 bp AGGGCAGAGCAGAGCTGTGCCTGCTTGCTGCCTGTCTaGCTGCACTCTGCAGTATGTGGTAAGGATCAGACA +
Preference number: 3 (lower is better)
Translates to: RAEQSCACLLPV*LHSAVCGKDQT
Trigger: TGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACAGCTCTGCTCTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CAA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTATACATCCAGAGGCTCTaGTCCTCACCCACAAAAGGC +
Preference number: 3 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLYIQRL*SSPTKG
Trigger: GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTA...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CAA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAAGCAAGACAGGAGGGATaGGTGAGCAGGAGGGACTGT +
Preference number: 3 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQARQEG*VSRRDC
Trigger: ACAGTCCCTCCTGCTCACCAATCCCTCCTGTCTTGC...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 72 bp CGTTTTCACGTGCTCAACAGGAGGGAGGGGACACCATaGCCAGAGAGACATCTACATCCAGAGGCTCTTGTC +
Preference number: 3 (lower is better)
Translates to: RFHVLNRREGTP*PERHLHPEALV
Trigger: GACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCCCTCCCTCCTGTTGAGCACGTGAAAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 72 bp GATGCTCCAAATAAGGGTCAAGGGAGGACCAGGAAGTaGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTG +
Preference number: 3 (lower is better)
Translates to: DAPNKGQGRTRK*EGGLGHLQSRL
Trigger: CAACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGACCCTTATTTGGAGCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CAA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAAAACACACAGGCTCCTaGCTCTTAGGGTATAGGCAC +
Preference number: 3 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLKHTGS*LLGYRH
Trigger: GTGCCTATACCCTAAGAGCAAGGAGCCTGTGTGTTT...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CAA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCATACATCCAGAGGCTCTaGTCCTCACCCACAAAAGGC +
Preference number: 3 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPYIQRL*SSPTKG
Trigger: GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTA...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 72 bp AGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTaGTCCAGCATAACTGGGACCCAAGGTCAGACACAG +
Preference number: 3 (lower is better)
Translates to: SRMKPPASRQTH*SSITGTQGQTQ
Trigger: CTGTGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 72 bp TCACCCCAGAACCCAGAGCTCACTCCTGCTCCATCTTaGCAGCTAACAACCTTGTTGCAATTCTCTGGGGAG +
Preference number: 3 (lower is better)
Translates to: SPQNPELTPAPS*QLTTLLQFSGE
Trigger: CTCCCCAGAGAATTGCAACAAGGTTGTTAGCTGTCAAGATGGAGCAGGAGTGAGCTCTGGGTTCTGGGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 72 bp AGAAGCTGGACCACAGAGCAGATACCTGACTTCACTTaGATGCACTTCAGCCAAGCCAGGCAAGACAGGAGG +
Preference number: 3 (lower is better)
Translates to: RSWTTEQIPDFT*MHFSQARQDRR
Trigger: CCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAGTCAGGTATCTGCTCTGTGGTCCAGCTTCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 72 bp TCAGTTCCTCAAAAGACACCTCCAACACCCAAGGACTaGCCCTACCCCCAAACTCTGGGAACTGGTGGCTAT +
Preference number: 3 (lower is better)
Translates to: SVPQKTPPTPKD*PYPQTLGTGGY
Trigger: ATAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGTGTCTTTTGAGGAACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 72 bp GCTGGACCACAGAGCAGATACCTGACTTCACTTGAATaGACTTCAGCCAAGCCAGGCAAGACAGGAGGGATT +
Preference number: 3 (lower is better)
Translates to: AGPQSRYLTSLE*TSAKPGKTGGI
Trigger: AATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAGTCAGGTATCTGCTCTGTGGTCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CAA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGACCATGAGAGCAGGCTaGCCCTACTCAGGTGAGAGC +
Preference number: 3 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLTMRAG*PYSGES
Trigger: GCTCTCACCTGAGTAGGGCAAGCCTGCTCTCATGGT...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CAA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGAATGGAGATGAAGAGTaGGTCAAGAGGAGAAACAAA +
Preference number: 3 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRNGDEE*VKRRNK
Trigger: TTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATT...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 72 bp CAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTaGAGGATAGCCCCAGACCTACTGTGCACTAGATTT +
Preference number: 3 (lower is better)
Translates to: QHNWDPRSDTVR*RIAPDLLCTRF
Trigger: AAATCTAGTGCACAGTAGGTCTGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 72 bp AATGTTCTGAGCCCACAGCAGCACAGTTTTGGCATCTaGCGAGTGTTAACAGACATGAATGGAGGCCTGGTC +
Preference number: 3 (lower is better)
Translates to: NVLSPQQHSFGI*RVLTDMNGGLV
Trigger: GACCAGGCCTCCATTCATGTCTGTTAACACTCGTCAGATGCCAAAACTGTGCTGCTGTGGGCTCAGAACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 72 bp CTCTGGGAACTGGTGGCTATTTTCTCATCTCTGAGTTaGCCTATAGTTGGTAACTGCACAGTGGTGGACCCC +
Preference number: 3 (lower is better)
Translates to: LWELVAIFSSLS*PIVGNCTVVDP
Trigger: GGGGTCCACCACTGTGCAGTTACCAACTATAGGTCAACTCAGAGATGAGAAAATAGCCACCAGTTCCCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 72 bp AATGGAGATGAAGAGTTGGTCAAGAGGAGAAACAAATaGCCAGCCTCATGGGGTGAGCTGTGCTGTCAACAG +
Preference number: 3 (lower is better)
Translates to: NGDEELVKRRNK*PASWGELCCQQ
Trigger: CTGTTGACAGCACAGCTCACCCCATGAGGCTGGTCATTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR GCA 72 bp GACCCTGTCTTTAAGAGACAGCTGGAAAGACGTTACTaGTTCTCCACTGGGCCCAAAGAATCTTTTGTCAGC +
Preference number: 3 (lower is better)
Translates to: DPVFKRQLERRY*FSTGPKESFVS
Trigger: GCTGACAAAAGATTCTTTGGGCCCAGTGGAGAAGCAGTAACGTCTTTCCAGCTGTCTCTTAAAGACAGGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 72 bp AGGCTCTTGTCCTCACCCACAAAAGGCACGTTTAATTaGTTTCCAAATGTTCTGAGCCCACAGCAGCACAGT +
Preference number: 3 (lower is better)
Translates to: RLLSSPTKGTFN*FPNVLSPQQHS
Trigger: ACTGTGCTGCTGTGGGCTCAGAACATTTGGAAACCAATTAAACGTGCCTTTTGTGGGTGAGGACAAGAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR CCA 72 bp AGTGGTGGACCCCATTGTGGTTCATCTGCTCTATGCTaGCAGAAGACTGACGTCATCCACAGAGAATATTCT +
Preference number: 3 (lower is better)
Translates to: SGGPHCGSSALC*QKTDVIHREYS
Trigger: AGAATATTCTCTGTGGATGACGTCAGTCTTCTGCCAGCATAGAGCAGATGAACCACAATGGGGTCCACCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR-3UTR CAA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAATGGAGATGAAGAGTaGGTCAAGAGGAGAAACAAA +
Preference number: 3 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPNGDEE*VKRRNK
Trigger: TTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATT...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
3UTR TCA 72 bp CCACAAAAGGCACGTTTAATTGGTTTCCAAATGTTCTaGGCCCACAGCAGCACAGTTTTGGCATCTGACGAG +
Preference number: 3 (lower is better)
Translates to: PQKARLIGFQMF*AHSSTVLASDE
Trigger: CTCGTCAGATGCCAAAACTGTGCTGCTGTGGGCTCAGAACATTTGGAAACCAATTAAACGTGCCTTTTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AGGATGGGGAGGGGTGCAGAGAGTCACCATGAGAGCAGGCTTGCCCTACTCAGGACGCGTCGCTGGTGCTaGCGGCGCCCGAGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: RMGRGAESHHESRLALLRTRRWC*RRPSSC
Trigger: GCAAGAGCTCGGGCGCCGGCAGCACCAGCGACGCGT...CCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GACATGGAGTGGGAGGGTCTGAAGAGGGGCAGGGGGCAGCTGAGGAATAGGCACAGCGATGCATGGTGGTaGGCACGAGCTCGCAGGCGG +
Preference number: 4 (lower is better)
Translates to: DMEWEGLKRGRGQLRNRHSDAWW*ARARRR
Trigger: CCGCCTGCGAGCTCGTGCTCACCACCATGCATCGCT...GTGCCTATTCCTCAGCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCATGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTGGCTTGGTGAGCGGGTaGGGAGCTCCGCCCCGGGTC +
Preference number: 4 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVGLVSG*GAPPRV
Trigger: GACCCGGGGCGGAGCTCCTCACCCGCTCACCAAGCC...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCAGCGATGCATGGTGGTaGGCACGAGCTCGCAGGCGG +
Preference number: 4 (lower is better)
Translates to: PYSGESSQWRALHRSSPSSDAWW*ARARRR
Trigger: CCGCCTGCGAGCTCGTGCTCACCACCATGCATCGCT...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGAGGTGGAAAGGGGCCTaGGATGGAGCTGCGGTGCCG +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRRWKGA*DGAAVP
Trigger: CGGCACCGCAGCTCCATCTCAGGCCCCTTTCCACCT...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp AGGATGGGGAGGGGTGCAGAGAGTCACCATGAGAGCAGGCTTGCCCTACTCAGGAGGTGGAAAGGGGCCTaGGATGGAGCTGCGGTGCCG +
Preference number: 4 (lower is better)
Translates to: RMGRGAESHHESRLALLRRWKGA*DGAAVP
Trigger: CGGCACCGCAGCTCCATCTCAGGCCCCTTTCCACCT...CCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GACATGGAGTGGGAGGGTCTGAAGAGGGGCAGGGGGCAGCTGAGGAATAGGCACTCCAGGCACTGCCTCTaGGCTGCTGGTGCCATGGCT +
Preference number: 4 (lower is better)
Translates to: DMEWEGLKRGRGQLRNRHSRHCL*AAGAMA
Trigger: AGCCATGGCACCAGCAGCTCAGAGGCAGTGCCTGGA...GTGCCTATTCCTCAGCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCATGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCTGGGCGAGGTCTCCATaGTCCGCACCAGCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: PYSGESSQWRALHRSSPSWARSP*SAPAAG
Trigger: ACCGGCTGCTGGTGCGGATCATGGAGACCTCGCCCA...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACACGGCGCCCGAGCTCTTaGCCCTCAACCCGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTRRPSS*PSTRWP
Trigger: GGGCCAGCGGGTTGAGGGGCAAGAGCTCGGGCGCCG...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGATGGGGAGGGGTGCAGAGAGTCACCATGAGAGCAGGCTTGCCCTACTCAGGCGCAGCACGGTCACCTaGACATGCGTGGGCAGCCAG +
Preference number: 4 (lower is better)
Translates to: RMGRGAESHHESRLALLRRSTVT*TCVGSQ
Trigger: CTGGCTGCCCACGCATGTCCAGGTGACCGTGCTGCG...CCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCCCGGTGGATGAATGGTaGGGGGAGGCTCCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: PYSGESSQWRALHRSSPSPVDEW*GEAPRD
Trigger: GTCCCTGGGAGCCTCCCCCCACCATTCATCCACCGG...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGTGGTGGCTTGGGAGGTaGAGGGCCAAGCCATGGCCC +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRWWLGR*RAKPWP
Trigger: GGGCCATGGCTTGGCCCTCCACCTCCCAAGCCACCA...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCACCCCGCTCCCCCTTCTaGGGCAGGAAGCTCCCGGTC +
Preference number: 4 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPPRSPF*GRKLPV
Trigger: GACCGGGAGCTTCCTGCCTCAGAAGGGGGAGCGGGG...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTTGTACGCGTCGCTGGTaGTGCCGGCGCCCGAGCTCT +
Preference number: 4 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVCTRRW*CRRPSS
Trigger: AGAGCTCGGGCGCCGGCAGCACCAGCGACGCGTACA...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACAGTGCTGGGCGCGGCCTaGGCGGAAGACCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTVLGAA*AEDLVQ
Trigger: CTGGACGAGGTCTTCCGCGCAGGCCGCGCCCAGCAC...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACACTGTACCACTGCGTGTaGTGGGCGCGGCCTGCGCGG +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTLYHCV*WARPAR
Trigger: CCGCGCAGGCCGCGCCCAGCACACGCAGTGGTACAG...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGCAGTGGACAGCCAGCTaGTGTGGCTTGGTGAGCGGG +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRQWTAS*CGLVSG
Trigger: CCCGCTCACCAAGCCACAGCAGCTGGCTGTCCACTG...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AGGATGGGGAGGGGTGCAGAGAGTCACCATGAGAGCAGGCTTGCCCTACTCAGGCAGTGGACAGCCAGCTaGTGTGGCTTGGTGAGCGGG +
Preference number: 4 (lower is better)
Translates to: RMGRGAESHHESRLALLRQWTAS*CGLVSG
Trigger: CCCGCTCACCAAGCCACAGCAGCTGGCTGTCCACTG...CCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGGCACTGCCTCTGAGCTaGTGGTGCCATGGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRALPLS*WCHGCL
Trigger: GAGGCAGCCATGGCACCAGCAGCTCAGAGGCAGTGC...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCCTCCCGGCCTCTTGCTaGAGCCTGCCAGCAGCAAAG +
Preference number: 4 (lower is better)
Translates to: PYSGESSQWRALHRSSPSLPASC*SLPAAK
Trigger: CTTTGCTGCTGGCAGGCTGCAGCAAGAGGCCGGGAG...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACTCACAGGGTGGGGACTaGCGCTGGGCTGGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: GTPWPERHLHPEALVLTHSQGGD*RWAGAP
Trigger: AGGAGCCCCAGCCCAGCGGCAGTCCCCACCCTGTGA...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACAAGGCAGGGGAGGGCATaGAGGGCCTGGCACGCCGTG +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTRQGRA*RAWHAV
Trigger: CACGGCGTGCCAGGCCCTCCATGCCCTCCCCTGCCT...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGTGCCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGGGTGGGGACTGCCGCTaGGCTGGGGCTCCTCAGCTG +
Preference number: 4 (lower is better)
Translates to: CACLLPVWLHSAVCGKDQGGDCR*AGAPQL
Trigger: CAGCTGAGGAGCCCCAGCCCAGCGGCAGTCCCCACC...CTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCGGCTTGGTGAGCGGGTaGGGAGCTCCGCCCCGGGTC +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPGLVSG*GAPPRV
Trigger: GACCCGGGGCGGAGCTCCTCACCCGCTCACCAAGCC...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp AGGATGGGGAGGGGTGCAGAGAGTCACCATGAGAGCAGGCTTGCCCTACTCAGGACACATGGCTCCCATTaGCGCAGAGGGAAGAGCGGG +
Preference number: 4 (lower is better)
Translates to: RMGRGAESHHESRLALLRTHGSH*RRGKSG
Trigger: CCCGCTCTTCCCTCTGCGTCAATGGGAGCCATGTGT...CCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACTGGGCGAGGTCTCCATaGTCCGCACCAGCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: GTPWPERHLHPEALVLTHWARSP*SAPAAG
Trigger: ACCGGCTGCTGGTGCGGATCATGGAGACCTCGCCCA...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAACGGTCACCTGGACATaGGTGGGCAGCCAGCGGGAG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLTVTWT*VGSQRE
Trigger: CTCCCGCTGGCTGCCCACGCATGTCCAGGTGACCGT...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCGGCGCCCGAGCTCTTaGCCCTCAACCCGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVRRPSS*PSTRWP
Trigger: GGGCCAGCGGGTTGAGGGGCAAGAGCTCGGGCGCCG...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCCGCAGGGCCCGCATCTaGCTCCTGTGCCCGCAGCAG +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSRRARI*LLCPQQ
Trigger: CTGCTGCGGGCACAGGAGGCAGATGCGGGCCCTGCG...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTACTTCTCGGGGTAGTAAACAGCGTGGTCCACAGCCCCCTTTCAGGACCCTCACGCAGCACGGTCACCTaGACATGCGTGGGCAGCCAG +
Preference number: 4 (lower is better)
Translates to: VLLGVVNSVVHSPLSGPSRSTVT*TCVGSQ
Trigger: CTGGCTGCCCACGCATGTCCAGGTGACCGTGCTGCG...TGAGGGTCCTGAAAGGGGGCTGTGGACCACGCTGTTTACTACCCCGAGAAGTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGTGCCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGTACCACTGCGTGTGCTaGGCGCGGCCTGCGCGGAAG +
Preference number: 4 (lower is better)
Translates to: CACLLPVWLHSAVCGKDQYHCVC*ARPARK
Trigger: CTTCCGCGCAGGCCGCGCCCAGCACACGCAGTGGTA...CTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCCCTCTCCAGAGCAACTaGCCCCTTTGGCCTGCTTGC +
Preference number: 4 (lower is better)
Translates to: PYSGESSQWRALHRSSPSPLQSN*PLWPAC
Trigger: GCAAGCAGGCCAAAGGGGCCAGTTGCTCTGGAGAGG...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTACCGGTGGATGAATGGTaGGGGGAGGCTCCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLPVDEW*GEAPRD
Trigger: GTCCCTGGGAGCCTCCCCCCACCATTCATCCACCGG...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGATGGGGAGGGGTGCAGAGAGTCACCATGAGAGCAGGCTTGCCCTACTCAGGTGGAGGGCCAAGCCATaGCCCCTCATCCAATCCCTG +
Preference number: 4 (lower is better)
Translates to: RMGRGAESHHESRLALLRWRAKP*PLIQSL
Trigger: CAGGGATTGGATGAGGGGCCATGGCTTGGCCCTCCA...CCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GACATGGAGTGGGAGGGTCTGAAGAGGGGCAGGGGGCAGCTGAGGAATAGGCACTGGCTGGTCCAGTTCTaGGTCCACAGAAACCTTGGG +
Preference number: 4 (lower is better)
Translates to: DMEWEGLKRGRGQLRNRHWLVQF*VHRNLG
Trigger: CCCAAGGTTTCTGTGGACTCAGAACTGGACCAGCCA...GTGCCTATTCCTCAGCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCATGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCACTGCTGGGAGGGGACTaGGAGAGGCCCAAACCCCTC +
Preference number: 4 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPLLGGD*ERPKPL
Trigger: GAGGGGTTTGGGCCTCTCTCAGTCCCCTCCCAGCAG...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GACATGGAGTGGGAGGGTCTGAAGAGGGGCAGGGGGCAGCTGAGGAATAGGCACTGGCTTTGCCCATCTTaGCCAGGCTGCCTAACTCAG +
Preference number: 4 (lower is better)
Translates to: DMEWEGLKRGRGQLRNRHWLCPS*PGCLTQ
Trigger: CTGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCA...GTGCCTATTCCTCAGCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCATGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCGGCCCGGGGAGGAGCTaGTCGAAGCTGGCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPGPGRS*SKLAGL
Trigger: GAGGCCAGCCAGCTTCGAGCAGCTCCTCCCCGGGCC...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGTGCCATGGCTGCCTCTaGCCCAAGAATCATCCGAGG +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRCHGCL*PKNHPR
Trigger: CCTCGGATGATTCTTGGGGCAGAGGCAGCCATGGCA...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGCACTGCCTCTGAGCTaGTGGTGCCATGGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLALPLS*WCHGCL
Trigger: GAGGCAGCCATGGCACCAGCAGCTCAGAGGCAGTGC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACCGCTACTCAGGGCTGTaGTCAGGCTGGTACGGGGCT +
Preference number: 4 (lower is better)
Translates to: GTPWPERHLHPEALVLTHRYSGL*SGWYGA
Trigger: AGCCCCGTACCAGCCTGAGCACAGCCCTGAGTAGCG...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGCCCCTCAACCCGCTaGCCCGCAGCACGGTCACCT +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQCPSTR*PAARSP
Trigger: AGGTGACCGTGCTGCGGGCCAGCGGGTTGAGGGGCA...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGACAGCCAGCTGCTGTaGCTTGGTGAGCGGGTGAGG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLDSQLL*LGERVR
Trigger: CCTCACCCGCTCACCAAGCCACAGCAGCTGGCTGTC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTACAGAGGAGGCCACCATaGGGGTGGCAACCTGGACTG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLQRRPP*GWQPGL
Trigger: CAGTCCAGGTTGCCACCCCCATGGTGGCCTCCTCTG...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCAAGAGGCGTGGTGGCTTaGGAGGTGGAGGGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPRGVVA*EVEGQA
Trigger: GGCTTGGCCCTCCACCTCCCAAGCCACCACGCCTCT...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGTGCCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGCACAAGCGGGGAGGCTaGGGTGGCTGCAGCATGGTC +
Preference number: 4 (lower is better)
Translates to: CACLLPVWLHSAVCGKDQHKRGG*GGCSMV
Trigger: GACCATGCTGCAGCCACCCCAGCCTCCCCGCTTGTG...CTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGGTCACCTGGACATaGGTGGGCAGCCAGCGGGAG +
Preference number: 4 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGTVTWT*VGSQRE
Trigger: CTCCCGCTGGCTGCCCACGCATGTCCAGGTGACCGT...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCTGTACGCGTCGCTGGTaGTGCCGGCGCCCGAGCTCT +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPCTRRW*CRRPSS
Trigger: AGAGCTCGGGCGCCGGCAGCACCAGCGACGCGTACA...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGTGCTGGTGCCATGGCTaGCTCTGCCCCAAGAATCAT +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRCWCHG*LCPKNH
Trigger: ATGATTCTTGGGGCAGAGGCAGCCATGGCACCAGCA...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GACATGGAGTGGGAGGGTCTGAAGAGGGGCAGGGGGCAGCTGAGGAATAGGCACAAGAAGGGGTTGCTCTaGAAGGAGTTGAGGAACGGG +
Preference number: 4 (lower is better)
Translates to: DMEWEGLKRGRGQLRNRHKKGLL*KELRNG
Trigger: CCCGTTCCTCAACTCCTTGCAGAGCAACCCCTTCTT...GTGCCTATTCCTCAGCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCATGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCACTAGGGCCTGGGTCTTaGAGCCCATCCTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPLGPGS*SPSSSS
Trigger: GCTGGAGGAGGATGGGCTGCAAGACCCAGGCCCTAG...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACTTCTCTCGGCCCACCTaGATCACCGTGTACGCGTCG +
Preference number: 4 (lower is better)
Translates to: GTPWPERHLHPEALVLTHFSRPT*ITVYAS
Trigger: CGACGCGTACACGGTGATCCAGGTGGGCCGAGAGAA...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCTACCACTGCGTGTGCTaGGCGCGGCCTGCGCGGAAG +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVYHCVC*ARPARK
Trigger: CTTCCGCGCAGGCCGCGCCCAGCACACGCAGTGGTA...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACCCATCAAGGTGGCCTTaGAGCTCAAGAAGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: GTPWPERHLHPEALVLTHPSRWP*SSRRAR
Trigger: CCGGGCCCTTCTTGAGCTCCAAGGCCACCTTGATGG...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGAAAGGGGCCTGAGATaGAGCTGCGGTGCCGTAAGG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLERGLR*SCGAVR
Trigger: CCTTACGGCACCGCAGCTCCATCTCAGGCCCCTTTC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTACCTCTCCAGAGCAACTaGCCCCTTTGGCCTGCTTGC +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLPLQSN*PLWPAC
Trigger: GCAAGCAGGCCAAAGGGGCCAGTTGCTCTGGAGAGG...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTATCCCTGCTCTGGCTCTaGCTCCAGCAATGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLSLLWL*LQQCWE
Trigger: CTCCCAGCATTGCTGGAGCCAGAGCCAGAGCAGGGA...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGGGGTGTGAAGAGGCGTaGTGGCTTGGGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTGCEEA*WLGRWR
Trigger: CCTCCACCTCCCAAGCCACCACGCCTCTTCACACCC...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACTTGAGTTATGGGGTCTaGGGACAGGCCCCTCAGGGC +
Preference number: 4 (lower is better)
Translates to: GTPWPERHLHPEALVLTHLSYGV*GQAPQG
Trigger: GCCCTGAGGGGCCTGTCCCCAGACCCCATAACTCAA...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTATTGCCTGGCTTGGAGTaGAGCCTGTACCACTGCGTG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLLPGLE*SLYHCV
Trigger: CACGCAGTGGTACAGGCTTCACTCCAAGCCAGGCAA...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCATCCAGGCACTGCCTCTaGGCTGCTGGTGCCATGGCT +
Preference number: 4 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPSRHCL*AAGAMA
Trigger: AGCCATGGCACCAGCAGCTCAGAGGCAGTGCCTGGA...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGGGATGGACCACTCCCTaGAGACCCAAAGGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTGWTTP*RPKGSW
Trigger: CCAGGACCCTTTGGGTCTTCAGGGAGTGGTCCATCC...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTCATTCCGGGCAGCCTTaGGTCTTCTCCACTACCGAG +
Preference number: 4 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVHSGQP*VFSTTE
Trigger: CTCGGTAGTGGAGAAGACGCAAGGCTGCCCGGAATG...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTACTTCTCGGGGTAGTAAACAGCGTGGTCCACAGCCCCCTTTCAGGACCCTCACCGATGAGTGAGCGATaGATGGTGGTGAGCACGAGC +
Preference number: 4 (lower is better)
Translates to: VLLGVVNSVVHSPLSGPSPMSER*MVVSTS
Trigger: GCTCGTGCTCACCACCATGCATCGCTCACTCATCGG...TGAGGGTCCTGAAAGGGGGCTGTGGACCACGCTGTTTACTACCCCGAGAAGTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGGTGCTGGGCGCGGCCTaGGCGGAAGACCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLVLGAA*AEDLVQ
Trigger: CTGGACGAGGTCTTCCGCGCAGGCCGCGCCCAGCAC...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGGGCCCGGGGAGGAGCTaGTCGAAGCTGGCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLGPGRS*SKLAGL
Trigger: GAGGCCAGCCAGCTTCGAGCAGCTCCTCCCCGGGCC...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCCGCTACTCAGGGCTGTaGTCAGGCTGGTACGGGGCT +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSRYSGL*SGWYGA
Trigger: AGCCCCGTACCAGCCTGAGCACAGCCCTGAGTAGCG...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGAGCTCACGCTCACGCTaGAGGAGCAGGCCAATGAGC +
Preference number: 4 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTSSRSR*RSRPMS
Trigger: GCTCATTGGCCTGCTCCTGCAGCGTGAGCGTGAGCT...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGTCCAGTTCTTGCACATaGTCGTCTCTCTGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRSSSCT*SSLWLS
Trigger: GCTGAGCCAGAGAGACGAGCATGTGCAAGAACTGGA...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGTGCCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGTTCTCTCGGCCCACCTaGATCACCGTGTACGCGTCG +
Preference number: 4 (lower is better)
Translates to: CACLLPVWLHSAVCGKDQFSRPT*ITVYAS
Trigger: CGACGCGTACACGGTGATCCAGGTGGGCCGAGAGAA...CTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGGCTGAAGGGAGACCGTaGCTTGTCCTTCATGGAAAG +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRAEGRP*LVLHGK
Trigger: CTTTCCATGAAGGACAAGCCACGGTCTCCCTTCAGC...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCACCCTACCCCCTTCAGTaGACAGCCAGCTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPPYPLQ*TASCCG
Trigger: GCCACAGCAGCTGGCTGTCCACTGAAGGGGGTAGGG...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACAGAGCTGCTGGTGCCATaGCTGCCTCTGCCCCAAGAA +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTELLVP*LPLPQE
Trigger: TTCTTGGGGCAGAGGCAGCCATGGCACCAGCAGCTC...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCCAGAGGAGGCCACCATaGGGGTGGCAACCTGGACTG +
Preference number: 4 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGQRRPP*GWQPGL
Trigger: CAGTCCAGGTTGCCACCCCCATGGTGGCCTCCTCTG...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAACATGCTCGTCTCTCTaGCTCAGCTCACGCTCACGC +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLTCSSL*LSSRSR
Trigger: GCGTGAGCGTGAGCTGAGCCAGAGAGACGAGCATGT...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGTGCCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGCATGGTCCTAGGGCCTaGGTCTTGCAGCCCATCCTC +
Preference number: 4 (lower is better)
Translates to: CACLLPVWLHSAVCGKDQHGPRA*VLQPIL
Trigger: GAGGATGGGCTGCAAGACCCAGGCCCTAGGACCATG...CTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACAAGCTGGCTTCCATCTTaGGGGGCCTCCTCATCTCGG +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTSWLPS*GASSSR
Trigger: CCGAGATGAGGAGGCCCCCCAAGATGGAAGCCAGCT...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTACAGGTTCTGGGGGTGTaGGCAACTCTTCTGGACCAG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLQVLGV*ATLLDQ
Trigger: CTGGTCCAGAAGAGTTGCCCACACCCCCAGAACCTG...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
3UTR CAA 72 bp CTAGGAGGACAAAGGGCAGAGCAGAGCTGTGCCTGCTaGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGT +
Preference number: 4 (lower is better)
Translates to: LGGQRAEQSCAC*LPVWLHSAVCG
Trigger: ACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACAGCTCTGCTCTGCCCTTTGTCCTCCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAAGTCCACGCCGATGAGTaGGCGATGCATGGTGGTGAG +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQVHADE*AMHGGE
Trigger: CTCACCACCATGCATCGCTCACTCATCGGCGTGGAC...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGCAGGAGCAGGCCAATaGGCTCATCATGAGTCAGGT +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLAGAGQ*AHHESG
Trigger: ACCTGACTCATGATGAGCTCATTGGCCTGCTCCTGC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCTCCAGGAGTGTCATCTaGACCAGGAAATCTCTCCCA +
Preference number: 4 (lower is better)
Translates to: PYSGESSQWRALHRSSPSSRSVI*TRKSLP
Trigger: TGGGAGAGATTTCCTGGTTCAGATGACACTCCTGGA...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GTACTTCTCGGGGTAGTAAACAGCGTGGTCCACAGCCCCCTTTCAGGACCCTCACGGATTCTCCCTTCATaGCAGGTGAAGCGACCTCTG +
Preference number: 4 (lower is better)
Translates to: VLLGVVNSVVHSPLSGPSRILPS*QVKRPL
Trigger: CAGAGGTCGCTTCACCTGTCATGAAGGGAGAATCCG...TGAGGGTCCTGAAAGGGGGCTGTGGACCACGCTGTTTACTACCCCGAGAAGTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGCTCCTTCTCCTTCTTaGCTGGCTTGGAGTGAAGCC +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLAPSPS*LAWSEA
Trigger: GGCTTCACTCCAAGCCAGGCAAGAAGGAGAAGGAGC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTATGGCTTTGCCCATCTTaGCCAGGCTGCCTAACTCAG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLWLCPS*PGCLTQ
Trigger: CTGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCA...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCAGCTCACGCTCACGCTaGAGGAGCAGGCCAATGAGC +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSSSRSR*RSRPMS
Trigger: GCTCATTGGCCTGCTCCTGCAGCGTGAGCGTGAGCT...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCACTATCTGCTGGACTCTaGCCCGCTCCCCCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPLSAGL*PAPPSE
Trigger: CTCAGAAGGGGGAGCGGGGCAGAGTCCAGCAGATAG...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCTCACCTGGACATGCGTaGGCAGCCAGCGGGAGGATC +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVSPGHA*AASGRI
Trigger: GATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGA...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCTCACCTGGACATGCGTaGGCAGCCAGCGGGAGGATC +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPSPGHA*AASGRI
Trigger: GATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGA...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGGGAGGAAGAAACCTTTaGCTTTGCCCATCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRGGRNL*LCPSCP
Trigger: TGGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCC...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCGAAAGGGGCCTGAGATaGAGCTGCGGTGCCGTAAGG +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSERGLR*SCGAVR
Trigger: CCTTACGGCACCGCAGCTCCATCTCAGGCCCCTTTC...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAAGAGCTGCTGGTGCCATaGCTGCCTCTGCCCCAAGAA +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQELLVP*LPLPQE
Trigger: TTCTTGGGGCAGAGGCAGCCATGGCACCAGCAGCTC...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGAGCAACTGGCCCCTTTaGCCTGCTTGCTCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTSNWPL*PACSAP
Trigger: AGGAGCTGAGCAAGCAGGCCAAAGGGGCCAGTTGCT...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACAACATGCTCGTCTCTCTaGCTCAGCTCACGCTCACGC +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTTCSSL*LSSRSR
Trigger: GCGTGAGCGTGAGCTGAGCCAGAGAGACGAGCATGT...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGATTCAGGCTGCACCTaGGAAGAAAGTACCCCGTCG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLDSGCT*EESTPS
Trigger: CGACGGGGTACTTTCTTCCCAGGTGCAGCCTGAATC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTATCCAATCCCTGCTCTaGCTCTGGCTCCAGCAATGC +
Preference number: 4 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVIQSLL*LWLQQC
Trigger: GCATTGCTGGAGCCAGAGCCAGAGCAGGGATTGGAT...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGATGTCCTCTTGTGGGTaGGCAGCTTGGGGGACTGTA +
Preference number: 4 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTMSSCG*AAWGTV
Trigger: TACAGTCCCCCAAGCTGCTCACCCACAAGAGGACAT...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCGTCCCCAAGACCTTCTaGCTCAGCAGAGTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGVPKTF*LSRVEL
Trigger: CAGCTCCACTCTGCTGAGTCAGAAGGTCTTGGGGAC...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAACCGATGAGTGAGCGATaGATGGTGGTGAGCACGAGC +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQPMSER*MVVSTS
Trigger: GCTCGTGCTCACCACCATGCATCGCTCACTCATCGG...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCTGGAAAGATCAAACATaGTGGCGCTCAGGTTGTTCC +
Preference number: 4 (lower is better)
Translates to: PYSGESSQWRALHRSSPSWKDQT*WRSGCS
Trigger: GGAACAACCTGAGCGCCAGCATGTTTGATCTTTCCA...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAAGAAACCTTTGGCTTTaGCCATCTTGCCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLRNLWL*PSCPGC
Trigger: GCAGCCTGGGCAAGATGGGCAAAGCCAAAGGTTTCT...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGGCTCTAGCCATATGTTaGTTCCTCTTCTTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRALAIC*FLFFLS
Trigger: GGAGAGGAAGAAGAGGAAGCAACATATGGCTAGAGC...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCAGATGCCCCACTATCTaGTGGACTCTGCCCCGCTCC +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVRCPTI*WTLPRS
Trigger: GGAGCGGGGCAGAGTCCAGCAGATAGTGGGGCATCT...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCCCCTCATCCAATCCCTaGTCTGGCTCTGGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPPSSNP*SGSGSS
Trigger: GCTGGAGCCAGAGCCAGAGCAGGGATTGGATGAGGG...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACCCTTCTTGCCTGGCTTaGAGTGAAGCCTGTACCACT +
Preference number: 4 (lower is better)
Translates to: GTPWPERHLHPEALVLTHPSCLA*SEACTT
Trigger: AGTGGTACAGGCTTCACTCCAAGCCAGGCAAGAAGG...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGATGGGGAGGGGTGCAGAGAGTCACCATGAGAGCAGGCTTGCCCTACTCAGGAAAGATCAAACATGCTaGCGCTCAGGTTGTTCCGTG +
Preference number: 4 (lower is better)
Translates to: RMGRGAESHHESRLALLRKDQTC*RSGCSV
Trigger: CACGGAACAACCTGAGCGCCAGCATGTTTGATCTTT...CCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAAAGCAACTGGCCCCTTTaGCCTGCTTGCTCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQSNWPL*PACSAP
Trigger: AGGAGCTGAGCAAGCAGGCCAAAGGGGCCAGTTGCT...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCAATCCTTTGGCCTCTTaGTGTCCACACTTGAGCCAA +
Preference number: 4 (lower is better)
Translates to: PYSGESSQWRALHRSSPSNPLAS*CPHLSQ
Trigger: TTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATT...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGCTGGGCTTCTGAGTTaGCTCCTTGGATTCTCTCAG +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLAGLLS*LLGFSQ
Trigger: CTGAGAGAATCCAAGGAGCCAACTCAGAAGCCCAGC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCGGGGTGAGGAGCAGCTaGGTCAGATTCTACCTGAGG +
Preference number: 4 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGGVRSS*VRFYLR
Trigger: CCTCAGGTAGAATCTGACCCAGCTGCTCCTCACCCC...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCCTTCAAGGACAATGGTaGCAGCAGCGGCAGTGGCAG +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSLQGQW*QQRQWQ
Trigger: CTGCCACTGCCGCTGCTGCCACCATTGTCCTTGAAG...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGTGGCCCTCGAGGCACTaGGGAGAGAGGGAGCAGGTG +
Preference number: 4 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLWPSRH*GEREQV
Trigger: CACCTGCTCCCTCTCTCCCCAGTGCCTCGAGGGCCA...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAGCCCAAACCCCTCTTTaGCTAGCTCCTGGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPAQTPL*LAPGSW
Trigger: CCAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGC...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCCGCATACTTGACTGCTaGGAGGGGACTGAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGRILDC*EGTERG
Trigger: GCCTCTCTCAGTCCCCTCCCAGCAGTCAAGTATGCG...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCATGGGAAGGCAGGTTCTaGGGGTGTGGGCAACTCTTC +
Preference number: 4 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPWEGRF*GCGQLF
Trigger: GAAGAGTTGCCCACACCCCCAGAACCTGCCTTCCCA...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGGGGACTGGGCTTCTaGGTTGGCTCCTTGGATTCT +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQWGLGF*VGSLDS
Trigger: AGAATCCAAGGAGCCAACTCAGAAGCCCAGTCCCCA...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060837.10
CDS-3UTR TCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCGCAGGAGCAGGCCAATaGGCTCATCATGAGTCAGGT +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSAGAGQ*AHHESG
Trigger: ACCTGACTCATGATGAGCTCATTGGCCTGCTCCTGC...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCTCCAGGCTGGGCTTCTaGGTTGGCTCCTTGGATTCT +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSSRLGF*VGSLDS
Trigger: AGAATCCAAGGAGCCAACTCAGAAGCCCAGCCTGGA...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAGCTCCTTCTCCTTCTTaGCTGGCTTGGAGTGAAGCC +
Preference number: 4 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPAPSPS*LAWSEA
Trigger: GGCTTCACTCCAAGCCAGGCAAGAAGGAGAAGGAGC...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCACCATCTTGCCCAGGCTaGCTAACTCAGGATCCTCCA +
Preference number: 4 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPPSCPG*LTQDPP
Trigger: TGGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGG...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGAGAAACCTTTGGCTTTaGCCATCTTGCCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTRNLWL*PSCPGC
Trigger: GCAGCCTGGGCAAGATGGGCAAAGCCAAAGGTTTCT...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCTGCCATGGCTGCCTCTaGCCCAAGAATCATCCGAGG +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVCHGCL*PKNHPR
Trigger: CCTCGGATGATTCTTGGGGCAGAGGCAGCCATGGCA...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCTGCTGGTGCCATGGCTaGCTCTGCCCCAAGAATCAT +
Preference number: 4 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGCWCHG*LCPKNH
Trigger: ATGATTCTTGGGGCAGAGGCAGCCATGGCACCAGCA...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACACTTCCGATCCTTTTCTaGTGCCACAGCCTCAGAGGA +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTLPILF*CHSLRG
Trigger: TCCTCTGAGGCTGTGGCAGCAGAAAAGGATCGGAAG...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp TGTGCCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGTCCAGTTCTTGCACATaGTCGTCTCTCTGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: CACLLPVWLHSAVCGKDQSSSCT*SSLWLS
Trigger: GCTGAGCCAGAGAGACGAGCATGTGCAAGAACTGGA...CTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCGTTGAGGCTGAGGCTTaGAGGTGCAACTGGGATGCC +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPVEAEA*RCNWDA
Trigger: GGCATCCCAGTTGCACCTGCAAGCCTCAGCCTCAAC...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTACTTCTCGGGGTAGTAAACAGCGTGGTCCACAGCCCCCTTTCAGGACCCTCATCTGGAGATTCAGGCTaGACCTGGGAAGAAAGTACC +
Preference number: 4 (lower is better)
Translates to: VLLGVVNSVVHSPLSGPSSGDSG*TWEEST
Trigger: GGTACTTTCTTCCCAGGTGCAGCCTGAATCTCCAGA...TGAGGGTCCTGAAAGGGGGCTGTGGACCACGCTGTTTACTACCCCGAGAAGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCGCCCGCATACTTGACTaGTGGGAGGGGACTGAGAGA +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVARILD*WEGTER
Trigger: TCTCTCAGTCCCCTCCCAGCAGTCAAGTATGCGGGC...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGGACAGCCAGCTGCTGTaGCTTGGTGAGCGGGTGAGG +
Preference number: 4 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLDSQLL*LGERVR
Trigger: CCTCACCCGCTCACCAAGCCACAGCAGCTGGCTGTC...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGCTCTAGACAGAGAGACAAGACGAAAACACACAGGCTCCTTGCTCTTAGGGTACCCTACCCCCTTCAGTaGACAGCCAGCTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: CSRQRDKTKTHRLLALRVPYPLQ*TASCCG
Trigger: GCCACAGCAGCTGGCTGTCCACTGAAGGGGGTAGGG...TACCCTAAGAGCAAGGAGCCTGTGTGTTTTCGTCTTGTCTCTCTGTCTAGAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCGAGGCACCATCAAGGTaGCCTTGGAGCTCAAGAAGG +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSEAPSR*PWSSRR
Trigger: CCTTCTTGAGCTCCAAGGCCACCTTGATGGTGCCTC...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCGAGGCACCATCAAGGTaGCCTTGGAGCTCAAGAAGG +
Preference number: 4 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGEAPSR*PWSSRR
Trigger: CCTTCTTGAGCTCCAAGGCCACCTTGATGGTGCCTC...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTACTTCTCGGGGTAGTAAACAGCGTGGTCCACAGCCCCCTTTCAGGACCCTCATCCTCATTGTACACATaGCTCCCATTGACGCAGAGG +
Preference number: 4 (lower is better)
Translates to: VLLGVVNSVVHSPLSGPSSSLYT*LPLTQR
Trigger: CCTCTGCGTCAATGGGAGCCATGTGTACAATGAGGA...TGAGGGTCCTGAAAGGGGGCTGTGGACCACGCTGTTTACTACCCCGAGAAGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTATCTGAGTTGGCTCCTTaGATTCTCTCAGGCCAAACC +
Preference number: 4 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLSELAP*ILSGQT
Trigger: GGTTTGGCCTGAGAGAATCCAAGGAGCCAACTCAGA...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCAGCTGGAAGCACAGACTaGATGCCACCAGATGTGACA +
Preference number: 4 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPAGSTD*MPPDVT
Trigger: TGTCACATCTGGTGGCATCCAGTCTGTGCTTCCAGC...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGGCTGGAAGCACAGACTaGATGCCACCAGATGTGACA +
Preference number: 4 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTAGSTD*MPPDVT
Trigger: TGTCACATCTGGTGGCATCCAGTCTGTGCTTCCAGC...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGTCAGGTGATAGTACTTaGCCGACTGGTCCAGCACAG +
Preference number: 4 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTSGDST*PTGPAQ
Trigger: CTGTGCTGGACCAGTCGGCCAAGTACTATCACCTGA...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGCTCTAGACAGAGAGACAAGACGAAAACACACAGGCTCCTTGCTCTTAGGGTATGTGAAGAGGCGTGGTaGCTTGGGAGGTGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: CSRQRDKTKTHRLLALRVCEEAW*LGRWRA
Trigger: GGCCCTCCACCTCCCAAGCCACCACGCCTCTTCACA...TACCCTAAGAGCAAGGAGCCTGTGTGTTTTCGTCTTGTCTCTCTGTCTAGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCCCTCCTCCTCTTCCTTaGCCCGCATACTTGACTGCT +
Preference number: 4 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGPPPLP*PAYLTA
Trigger: AGCAGTCAAGTATGCGGGCCAAGGAAGAGGAGGAGG...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGTGCCAGAAGGCAATGGAGATGAAGAGTTGGTCAAGAGGAGAAACAAATGACCTGGGGCTCCTCAGCTaGTCGTGTCTCCAGGGGCAG +
Preference number: 4 (lower is better)
Translates to: RCQKAMEMKSWSRGETNDLGLLS*SCLQGQ
Trigger: CTGCCCCTGGAGACACGACCAGCTGAGGAGCCCCAG...GTCATTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATTGCCTTCTGGCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp TGCTCTAGACAGAGAGACAAGACGAAAACACACAGGCTCCTTGCTCTTAGGGTAGTCCACGCCGATGAGTaGGCGATGCATGGTGGTGAG +
Preference number: 4 (lower is better)
Translates to: CSRQRDKTKTHRLLALRVVHADE*AMHGGE
Trigger: CTCACCACCATGCATCGCTCACTCATCGGCGTGGAC...TACCCTAAGAGCAAGGAGCCTGTGTGTTTTCGTCTTGTCTCTCTGTCTAGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCATGTCCTCTTGTGGGTaGGCAGCTTGGGGGACTGTA +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPMSSCG*AAWGTV
Trigger: TACAGTCCCCCAAGCTGCTCACCCACAAGAGGACAT...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCGAACTTCTGGGGAGCTaGACAGAGATGCCCCACTAT +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSELLGS*TEMPHY
Trigger: ATAGTGGGGCATCTCTGTTCAGCTCCCCAGAAGTTC...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCCATCTTGCCCAGGCTaGCTAACTCAGGATCCTCCA +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVPSCPG*LTQDPP
Trigger: TGGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGG...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACACTTCTCCTTCTTGCCTaGCTTGGAGTGAAGCCTGTA +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTLLLLA*LGVKPV
Trigger: TACAGGCTTCACTCCAAGCCAGGCAAGAAGGAGAAG...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCAACTGGATGGTCACCTaGATCTCACCGCGCTCCTTC +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPNWMVT*ISPRSF
Trigger: GAAGGAGCGCGGTGAGATCCAGGTGACCATCCAGTT...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTACTTCTCGGGGTAGTAAACAGCGTGGTCCACAGCCCCCTTTCAGGACCCTCATTGTTCCGTGTGAACTaGATGGTCACCTGGATCTCA +
Preference number: 4 (lower is better)
Translates to: VLLGVVNSVVHSPLSGPSLFRVN*MVTWIS
Trigger: TGAGATCCAGGTGACCATCCAGTTCACACGGAACAA...TGAGGGTCCTGAAAGGGGGCTGTGGACCACGCTGTTTACTACCCCGAGAAGTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAAGCTGAAGGGAGACCGTaGCTTGTCCTTCATGGAAAG +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQAEGRP*LVLHGK
Trigger: CTTTCCATGAAGGACAAGCCACGGTCTCCCTTCAGC...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCGGAGCTGCTCGAAGCTaGCTGGCCTCATCACTGTAT +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVGAARS*LASSLY
Trigger: ATACAGTGATGAGGCCAGCCAGCTTCGAGCAGCTCC...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGCCATCAAGGTGGCCTTaGAGCTCAAGAAGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLPSRWP*SSRRAR
Trigger: CCGGGCCCTTCTTGAGCTCCAAGGCCACCTTGATGG...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCACACAGCAGAATCCTTTaGCCTCTTGGTGTCCACACT +
Preference number: 4 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPHSRIL*PLGVHT
Trigger: AGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTG...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATCAGGTGATAGTACTTaGCCGACTGGTCCAGCACAG +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQSGDST*PTGPAQ
Trigger: CTGTGCTGGACCAGTCGGCCAAGTACTATCACCTGA...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GACATGGAGTGGGAGGGTCTGAAGAGGGGCAGGGGGCAGCTGAGGAATAGGCACCAATTTCTCCAACTCTaGATTTACCCATTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: DMEWEGLKRGRGQLRNRHQFLQL*IYPFLL
Trigger: AAGGAGGAATGGGTAAATCCAGAGTTGGAGAAATTG...GTGCCTATTCCTCAGCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCATGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
3UTR CAA 72 bp CTCACCCCAGAACCCAGAGCTCACTCCTGCTCCATCTaGACAGCTAACAACCTTGTTGCAATTCTCTGGGGA +
Preference number: 4 (lower is better)
Translates to: LTPEPRAHSCSI*TANNLVAILWG
Trigger: TCCCCAGAGAATTGCAACAAGGTTGTTAGCTGTCAAGATGGAGCAGGAGTGAGCTCTGGGTTCTGGGGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp AGGTGCCAGAAGGCAATGGAGATGAAGAGTTGGTCAAGAGGAGAAACAAATGACACACATGGCTCCCATTaGCGCAGAGGGAAGAGCGGG +
Preference number: 4 (lower is better)
Translates to: RCQKAMEMKSWSRGETNDTHGSH*RRGKSG
Trigger: CCCGCTCTTCCCTCTGCGTCAATGGGAGCCATGTGT...GTCATTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATTGCCTTCTGGCACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGGGGTCAGATTCTACCTaGGGAGACACGTCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLGSDST*GDTSRL
Trigger: CAGCCTGGACGTGTCTCCTCAGGTAGAATCTGACCC...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCGTGCTATGTCGGCTTTaGGATCCTCGAAGAAGGGGT +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVVLCRL*DPRRRG
Trigger: ACCCCTTCTTCGAGGATCTCAAAGCCGACATAGCAC...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCCAGCAGCAAAGATGTTaGAGGTGTCGTCCCACTCAG +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPQQQRC*RCRPTQ
Trigger: CTGAGTGGGACGACACCTTCAACATCTTTGCTGCTG...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp TGCTCTAGACAGAGAGACAAGACGAAAACACACAGGCTCCTTGCTCTTAGGGTAGAGAATTGGTGGGTGTaGAGAGGCGTGGTGGCTTGG +
Preference number: 4 (lower is better)
Translates to: CSRQRDKTKTHRLLALRVENWWV*RGVVAW
Trigger: CCAAGCCACCACGCCTCTTCACACCCACCAATTCTC...TACCCTAAGAGCAAGGAGCCTGTGTGTTTTCGTCTTGTCTCTCTGTCTAGAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCATCTTCTGGACCAGAGTaGATAGAGGATCCCCTTGAC +
Preference number: 4 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPSSGPE*IEDPLD
Trigger: GTCAAGGGGATCCTCTATTCACTCTGGTCCAGAAGA...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGCATTCCGGGCAGCCTTaGGTCTTCTCCACTACCGAG +
Preference number: 4 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLHSGQP*VFSTTE
Trigger: CTCGGTAGTGGAGAAGACGCAAGGCTGCCCGGAATG...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCCTTCTTGCCTGGCTTaGAGTGAAGCCTGTACCACT +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVPSCLA*SEACTT
Trigger: AGTGGTACAGGCTTCACTCCAAGCCAGGCAAGAAGG...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCCTTCTCCTTCTTGCCTaGCTTGGAGTGAAGCCTGTA +
Preference number: 4 (lower is better)
Translates to: LHLNALQPSQARQEGLVSLLLLA*LGVKPV
Trigger: TACAGGCTTCACTCCAAGCCAGGCAAGAAGGAGAAG...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCGGAGGAAGAAACCTTTaGCTTTGCCCATCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGGGRNL*LCPSCP
Trigger: TGGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCC...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAACACAGCAGAATCCTTTaGCCTCTTGGTGTCCACACT +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQHSRIL*PLGVHT
Trigger: AGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTG...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGTGCCAGAAGGCAATGGAGATGAAGAGTTGGTCAAGAGGAGAAACAAATGACCTCCCAGGCTCTCCCTaGGGCTCTGTCGCTTTCACT +
Preference number: 4 (lower is better)
Translates to: RCQKAMEMKSWSRGETNDLPGSP*GSVAFT
Trigger: AGTGAAAGCGACAGAGCCCCAGGGAGAGCCTGGGAG...GTCATTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATTGCCTTCTGGCACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGTGCCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACTGTGTTCAGCTCCTaGAAAAGCTGGCTTCCATCT +
Preference number: 4 (lower is better)
Translates to: CACLLPVWLHSAVCGKDQTVFSS*KSWLPS
Trigger: AGATGGAAGCCAGCTTTTCCAGGAGCTGAACACAGT...CTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACATGGGTCTTCAAGTTCTaGCTTACCTATCAGGGTTCC +
Preference number: 4 (lower is better)
Translates to: PASRQTHWSSITGTQGQTWVFKF*LTYQGS
Trigger: GGAACCCTGATAGGTAAGCCAGAACTTGAAGACCCA...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGGAAAGATCAAACATaGTGGCGCTCAGGTTGTTCC +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQWKDQT*WRSGCS
Trigger: GGAACAACCTGAGCGCCAGCATGTTTGATCTTTCCA...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGAACTGGATGGTCACCTaGATCTCACCGCGCTCCTTC +
Preference number: 4 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLNWMVT*ISPRSF
Trigger: GAAGGAGCGCGGTGAGATCCAGGTGACCATCCAGTT...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAAAAAGATCAAACATGCTaGCGCTCAGGTTGTTCCGTG +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQKDQTC*RSGCSV
Trigger: CACGGAACAACCTGAGCGCCAGCATGTTTGATCTTT...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGCTCTAGACAGAGAGACAAGACGAAAACACACAGGCTCCTTGCTCTTAGGGTACTGCTCGAAGCTGGCTaGCCTCATCACTGTATGTCC +
Preference number: 4 (lower is better)
Translates to: CSRQRDKTKTHRLLALRVLLEAG*PHHCMS
Trigger: GGACATACAGTGATGAGGCCAGCCAGCTTCGAGCAG...TACCCTAAGAGCAAGGAGCCTGTGTGTTTTCGTCTTGTCTCTCTGTCTAGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAAAATCCTTTGGCCTCTTaGTGTCCACACTTGAGCCAA +
Preference number: 4 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQNPLAS*CPHLSQ
Trigger: TTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATT...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCCACACTGAGAACTTCTaGGGAGCTGAACAGAGATGC +
Preference number: 4 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPHTENF*GAEQRC
Trigger: GCATCTCTGTTCAGCTCCCCAGAAGTTCTCAGTGTG...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCTCCTCCTTAGACTCTTaGGGACCAATGGCCAATGCA +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVSSLDS*GPMANA
Trigger: TGCATTGGCCATTGGTCCCCAAGAGTCTAAGGAGGA...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCATGTGGGCAACTCTTCTaGACCAGAGTGAATAGAGGA +
Preference number: 4 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPCGQLF*TRVNRG
Trigger: TCCTCTATTCACTCTGGTCCAGAAGAGTTGCCCACA...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR TCA 90 bp AGGTGCCAGAAGGCAATGGAGATGAAGAGTTGGTCAAGAGGAGAAACAAATGACTCCTCCTCCTCCACCTaGGAATTGGTGGGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: RCQKAMEMKSWSRGETNDSSSST*ELVGVK
Trigger: CTTCACACCCACCAATTCTCAGGTGGAGGAGGAGGA...GTCATTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATTGCCTTCTGGCACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR GCA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCCAGAGGGCAGTCTATaGAATTTCTCCAACTCTGGA +
Preference number: 4 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVPEGSL*NFSNSG
Trigger: TCCAGAGTTGGAGAAATTGCATAGACTGCCCTCTGG...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGTGCCAGAAGGCAATGGAGATGAAGAGTTGGTCAAGAGGAGAAACAAATGACCTGCTCGAAGCTGGCTaGCCTCATCACTGTATGTCC +
Preference number: 4 (lower is better)
Translates to: RCQKAMEMKSWSRGETNDLLEAG*PHHCMS
Trigger: GGACATACAGTGATGAGGCCAGCCAGCTTCGAGCAG...GTCATTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATTGCCTTCTGGCACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp AGGTGCCAGAAGGCAATGGAGATGAAGAGTTGGTCAAGAGGAGAAACAAATGACGGAGCTGCTCGAAGCTaGCTGGCCTCATCACTGTAT +
Preference number: 4 (lower is better)
Translates to: RCQKAMEMKSWSRGETNDGAARS*LASSLY
Trigger: ATACAGTGATGAGGCCAGCCAGCTTCGAGCAGCTCC...GTCATTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATTGCCTTCTGGCACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGCTCTAGACAGAGAGACAAGACGAAAACACACAGGCTCCTTGCTCTTAGGGTATCCTCATTGTACACATaGCTCCCATTGACGCAGAGG +
Preference number: 4 (lower is better)
Translates to: CSRQRDKTKTHRLLALRVSSLYT*LPLTQR
Trigger: CCTCTGCGTCAATGGGAGCCATGTGTACAATGAGGA...TACCCTAAGAGCAAGGAGCCTGTGTGTTTTCGTCTTGTCTCTCTGTCTAGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CCA 90 bp TGCTCTAGACAGAGAGACAAGACGAAAACACACAGGCTCCTTGCTCTTAGGGTAACTGGGCTTCTGAGTTaGCTCCTTGGATTCTCTCAG +
Preference number: 4 (lower is better)
Translates to: CSRQRDKTKTHRLLALRVTGLLS*LLGFSQ
Trigger: CTGAGAGAATCCAAGGAGCCAACTCAGAAGCCCAGT...TACCCTAAGAGCAAGGAGCCTGTGTGTTTTCGTCTTGTCTCTCTGTCTAGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060837.10
CDS-3UTR CCA 90 bp TGCTCTAGACAGAGAGACAAGACGAAAACACACAGGCTCCTTGCTCTTAGGGTATTGTTCCGTGTGAACTaGATGGTCACCTGGATCTCA +
Preference number: 4 (lower is better)
Translates to: CSRQRDKTKTHRLLALRVLFRVN*MVTWIS
Trigger: TGAGATCCAGGTGACCATCCAGTTCACACGGAACAA...TACCCTAAGAGCAAGGAGCCTGTGTGTTTTCGTCTTGTCTCTCTGTCTAGAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp TGCCCCTCAACCCGCTGGCCCGCAGCACGGTCACCTGGACATGCGTaGGCAGCCAGCGGGAGGATCCGGCCGCCGGCTCAGGGTCCCGCA +
Preference number: 5 (lower is better)
Translates to: CPSTRWPAARSPGHA*AASGRIRPPAQGPA
Trigger: TGCGGGACCCTGAGCCGGCGGCCGGATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGACCGTGCTGCGGGCCAGCGGGTTGAGGGGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp CGTCGCTGGTGCTGCCGGCGCCCGAGCTCTTGCCCCTCAACCCGCTaGCCCGCAGCACGGTCACCTGGACATGCGTGGGCAGCCAGCGGG +
Preference number: 5 (lower is better)
Translates to: RRWCCRRPSSCPSTR*PAARSPGHAWAASG
Trigger: CCCGCTGGCTGCCCACGCATGTCCAGGTGACCGTGCTGCGGGCCAGCGGGTTGAGGGGCAAGAGCTCGGGCGCCGGCAGCACCAGCGACG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 90 bp CTCTTGCCCCTCAACCCGCTGGCCCGCAGCACGGTCACCTGGACATaGGTGGGCAGCCAGCGGGAGGATCCGGCCGCCGGCTCAGGGTCC +
Preference number: 5 (lower is better)
Translates to: LLPLNPLARSTVTWT*VGSQREDPAAGSGS
Trigger: GGACCCTGAGCCGGCGGCCGGATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGACCGTGCTGCGGGCCAGCGGGTTGAGGGGCAAGAG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp CCCGAGCTCTTGCCCCTCAACCCGCTGGCCCGCAGCACGGTCACCTaGACATGCGTGGGCAGCCAGCGGGAGGATCCGGCCGCCGGCTCA +
Preference number: 5 (lower is better)
Translates to: PELLPLNPLARSTVT*TCVGSQREDPAAGS
Trigger: TGAGCCGGCGGCCGGATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGACCGTGCTGCGGGCCAGCGGGTTGAGGGGCAAGAGCTCGGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 90 bp ACGGTTGCCCGGCCCAGAAACTTGTCCACGCCGATGAGTGAGCGATaGATGGTGGTGAGCACGAGCTCGCAGGCGGCGTTGGGGCCGGAG +
Preference number: 5 (lower is better)
Translates to: TVARPRNLSTPMSER*MVVSTSSQAALGPE
Trigger: CTCCGGCCCCAACGCCGCCTGCGAGCTCGTGCTCACCACCATGCATCGCTCACTCATCGGCGTGGACAAGTTTCTGGGCCGGGCAACCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp CGGGTAACCGGGCCCCCTCCTCCTCTCCAGAGCAACTGGCCCCTTTaGCCTGCTTGCTCAGCTCCTCCTGTCCAGGCACTGCCTCTGAGC +
Preference number: 5 (lower is better)
Translates to: RVTGPPPPLQSNWPL*PACSAPPVQALPLS
Trigger: GCTCAGAGGCAGTGCCTGGACAGGAGGAGCTGAGCAAGCAGGCCAAAGGGGCCAGTTGCTCTGGAGAGGAGGAGGGGGCCCGGTTACCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 90 bp TGGCTTGGAGTGAAGCCTGTACCACTGCGTGTGCTGGGCGCGGCCTaGGCGGAAGACCTCGTCCAGAGCTACGGTTGCCCGGCCCAGAAA +
Preference number: 5 (lower is better)
Translates to: WLGVKPVPLRVLGAA*AEDLVQSYGCPAQK
Trigger: TTTCTGGGCCGGGCAACCGTAGCTCTGGACGAGGTCTTCCGCGCAGGCCGCGCCCAGCACACGCAGTGGTACAGGCTTCACTCCAAGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS TCA 90 bp CAGAGCTACGGTTGCCCGGCCCAGAAACTTGTCCACGCCGATGAGTaGGCGATGCATGGTGGTGAGCACGAGCTCGCAGGCGGCGTTGGG +
Preference number: 5 (lower is better)
Translates to: QSYGCPAQKLVHADE*AMHGGEHELAGGVG
Trigger: CCCAACGCCGCCTGCGAGCTCGTGCTCACCACCATGCATCGCTCACTCATCGGCGTGGACAAGTTTCTGGGCCGGGCAACCGTAGCTCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp CCATTGACGCAGAGGGAAGAGCGGGAGGCACCATCAAGGTGGCCTTaGAGCTCAAGAAGGGCCCGGGGAGGAGCTGCTCGAAGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: PLTQREEREAPSRWP*SSRRARGGAARSWL
Trigger: CAGCCAGCTTCGAGCAGCTCCTCCCCGGGCCCTTCTTGAGCTCCAAGGCCACCTTGATGGTGCCTCCCGCTCTTCCCTCTGCGTCAATGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp TGGCTCCCATTGACGCAGAGGGAAGAGCGGGAGGCACCATCAAGGTaGCCTTGGAGCTCAAGAAGGGCCCGGGGAGGAGCTGCTCGAAGC +
Preference number: 5 (lower is better)
Translates to: WLPLTQREEREAPSR*PWSSRRARGGAARS
Trigger: GCTTCGAGCAGCTCCTCCCCGGGCCCTTCTTGAGCTCCAAGGCCACCTTGATGGTGCCTCCCGCTCTTCCCTCTGCGTCAATGGGAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp GGGTGTGAAGAGGCGTGGTGGCTTGGGAGGTGGAGGGCCAAGCCATaGCCCCTCATCCAATCCCTGCTCTGGCTCTGGCTCCAGCAATGC +
Preference number: 5 (lower is better)
Translates to: GCEEAWWLGRWRAKP*PLIQSLLWLWLQQC
Trigger: GCATTGCTGGAGCCAGAGCCAGAGCAGGGATTGGATGAGGGGCCATGGCTTGGCCCTCCACCTCCCAAGCCACCACGCCTCTTCACACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 90 bp TCCCACTCCCGGCCTCTTGCTGCAGCCTGCCAGCAGCAAAGATGTTaGAGGTGTCGTCCCACTCAGGCAGGGCTTTCCCAGGGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: SHSRPLAAACQQQRC*RCRPTQAGLSQGRP
Trigger: TGGCCTCCCCTGGGAAAGCCCTGCCTGAGTGGGACGACACCTTCAACATCTTTGCTGCTGGCAGGCTGCAGCAAGAGGCCGGGAGTGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 90 bp CTGGATGGTCACCTGGATCTCACCGCGCTCCTTCTCCTTCTTGCCTaGCTTGGAGTGAAGCCTGTACCACTGCGTGTGCTGGGCGCGGCC +
Preference number: 5 (lower is better)
Translates to: LDGHLDLTALLLLLA*LGVKPVPLRVLGAA
Trigger: GGCCGCGCCCAGCACACGCAGTGGTACAGGCTTCACTCCAAGCCAGGCAAGAAGGAGAAGGAGCGCGGTGAGATCCAGGTGACCATCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCAAGAGGCGTGGTGGCTaGGGAGGTGGAGGGCCAAGC +
Preference number: 5 (lower is better)
Translates to: PYSGESSQWRALHRSSPSKRRGG*GGGGPS
Trigger: GCTTGGCCCTCCACCTCCCAAGCCACCACGCCTCTT...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 90 bp CCTCCTCTCCCTCTTCCTCCTCTTCCTCCCCCTCCTCCTCTTCCTTaGCCCGCATACTTGACTGCTGGGAGGGGACTGAGAGAGGCCCAA +
Preference number: 5 (lower is better)
Translates to: PPLPLPPLPPPPPLP*PAYLTAGRGLREAQ
Trigger: TTGGGCCTCTCTCAGTCCCCTCCCAGCAGTCAAGTATGCGGGCCAAGGAAGAGGAGGAGGGGGAGGAAGAGGAGGAAGAGGGAGAGGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 90 bp GGCGGTAGCTCGAACGAACACTCTTCGCACCATTCCGGGCAGCCTTaGGTCTTCTCCACTACCGAGGTGCTGTACTTCTCTCGGCCCACC +
Preference number: 5 (lower is better)
Translates to: GGSSNEHSSHHSGQP*VFSTTEVLYFSRPT
Trigger: GGTGGGCCGAGAGAAGTACAGCACCTCGGTAGTGGAGAAGACGCAAGGCTGCCCGGAATGGTGCGAAGAGTGTTCGTTCGAGCTACCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 90 bp CCTTCTGAGGCAGGAAGCTCCCGGTCTGGTGTTGAGGCTGAGGCTTaGAGGTGCAACTGGGATGCCCTGGAGGATGGACCACTCCCTGAA +
Preference number: 5 (lower is better)
Translates to: PSEAGSSRSGVEAEA*RCNWDALEDGPLPE
Trigger: TTCAGGGAGTGGTCCATCCTCCAGGGCATCCCAGTTGCACCTGCAAGCCTCAGCCTCAACACCAGACCGGGAGCTTCCTGCCTCAGAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 90 bp TGGCCTTGGAGCTCAAGAAGGGCCCGGGGAGGAGCTGCTCGAAGCTaGCTGGCCTCATCACTGTATGTCCTCTTGTGGGTGAGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: WPWSSRRARGGAARS*LASSLYVLLWVSSL
Trigger: CAAGCTGCTCACCCACAAGAGGACATACAGTGATGAGGCCAGCCAGCTTCGAGCAGCTCCTCCCCGGGCCCTTCTTGAGCTCCAAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCCTACTCAGGTGAGAGCAGTCAGTGGCGGGCACTACACAGGTCCTCACCATCCCCATTCCGGGCAGCCTaGCGTCTTCTCCACTACCGA +
Preference number: 5 (lower is better)
Translates to: PYSGESSQWRALHRSSPSPFRAA*RLLHYR
Trigger: TCGGTAGTGGAGAAGACGCAAGGCTGCCCGGAATGG...GGATGGTGAGGACCTGTGTAGTGCCCGCCACTGACTGCTCTCACCTGAGTAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp AGGATGGGGAGGGGTGCAGAGAGTCACCATGAGAGCAGGCTTGCCCTACTCAGGCCATTCCGGGCAGCCTaGCGTCTTCTCCACTACCGA +
Preference number: 5 (lower is better)
Translates to: RMGRGAESHHESRLALLRPFRAA*RLLHYR
Trigger: TCGGTAGTGGAGAAGACGCAAGGCTGCCCGGAATGG...CCTGAGTAGGGCAAGCCTGCTCTCATGGTGACTCTCTGCACCCCTCCCCATCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GACATGGAGTGGGAGGGTCTGAAGAGGGGCAGGGGGCAGCTGAGGAATAGGCACCCAAACCAGCTACTCTaGGCCTTTTCCTCCCCGGTG +
Preference number: 5 (lower is better)
Translates to: DMEWEGLKRGRGQLRNRHPNQLL*AFSSPV
Trigger: CACCGGGGAGGAAAAGGCCAAGAGTAGCTGGTTTGG...GTGCCTATTCCTCAGCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCATGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTGGGGCCAGGGGAGATTaGCAGCAGTGTGGGCGAGGT +
Preference number: 5 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVGARGD*QQCGRG
Trigger: ACCTCGCCCACACTGCTGCAAATCTCCCCTGGCCCC...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp AATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCACCCACTCCCGGCCTCTaGCTGCAGCCTGCCAGCAGC +
Preference number: 5 (lower is better)
Translates to: NEASCFQTNPLVQHNWDPPTPGL*LQPASS
Trigger: GCTGCTGGCAGGCTGCAGCAAGAGGCCGGGAGTGGG...TGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACCCTAGGGCCTGGGTCTaGCAGCCCATCCTCCTCCAG +
Preference number: 5 (lower is better)
Translates to: GTPWPERHLHPEALVLTHPRAWV*QPILLQ
Trigger: CTGGAGGAGGATGGGCTGCAAGACCCAGGCCCTAGG...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 90 bp ACCATCAAGGTGGCCTTGGAGCTCAAGAAGGGCCCGGGGAGGAGCTaGTCGAAGCTGGCTGGCCTCATCACTGTATGTCCTCTTGTGGGT +
Preference number: 5 (lower is better)
Translates to: TIKVALELKKGPGRS*SKLAGLITVCPLVG
Trigger: ACCCACAAGAGGACATACAGTGATGAGGCCAGCCAGCTTCGAGCAGCTCCTCCCCGGGCCCTTCTTGAGCTCCAAGGCCACCTTGATGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp TTTGTCCTCCTCCTCCACCTGAGAATTGGTGGGTGTGAAGAGGCGTaGTGGCTTGGGAGGTGGAGGGCCAAGCCATGGCCCCTCATCCAA +
Preference number: 5 (lower is better)
Translates to: FVLLLHLRIGGCEEA*WLGRWRAKPWPLIQ
Trigger: TTGGATGAGGGGCCATGGCTTGGCCCTCCACCTCCCAAGCCACCACGCCTCTTCACACCCACCAATTCTCAGGTGGAGGAGGAGGACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGCCCGGCCCAGAAACTaGTCCACGCCGATGAGTGAG +
Preference number: 5 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLARPRN*STPMSE
Trigger: CTCACTCATCGGCGTGGACAAGTTTCTGGGCCGGGC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GACATGGAGTGGGAGGGTCTGAAGAGGGGCAGGGGGCAGCTGAGGAATAGGCACGGCTGGGCTTCTGAGTaGGCTCCTTGGATTCTCTCA +
Preference number: 5 (lower is better)
Translates to: DMEWEGLKRGRGQLRNRHGWASE*APWILS
Trigger: TGAGAGAATCCAAGGAGCCAACTCAGAAGCCCAGCC...GTGCCTATTCCTCAGCTGCCCCCTGCCCCTCTTCAGACCCTCCCACTCCATGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTAGCTCCCGGTCTGGTGTaGAGGCTGAGGCTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLAPGLV*RLRLAG
Trigger: ACCTGCAAGCCTCAGCCTCAACACCAGACCGGGAGC...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGCCTCCAGGGCGCTGCTaGGAAGAATCGCTGAGGCAG +
Preference number: 5 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTPPGRC*EESLRQ
Trigger: CTGCCTCAGCGATTCTTCCAAGCAGCGCCCTGGAGG...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACAGCCCCTTTGGCCTGCTaGCTCAGCTCCTCCTGTCCA +
Preference number: 5 (lower is better)
Translates to: PASRQTHWSSITGTQGQTAPLAC*LSSSCP
Trigger: TGGACAGGAGGAGCTGAGCAAGCAGGCCAAAGGGGC...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CTTAGTTCCCATCCCTGTCCCAGTGGCCTAGGAGACCCTCCAGGTGCCAGAAGGGCACAGCAGAATCCTTaGGCCTCTTGGTGTCCACAC +
Preference number: 5 (lower is better)
Translates to: LSSHPCPSGLGDPPGARRAQQNP*ASWCPH
Trigger: GTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGC...CCTTCTGGCACCTGGAGGGTCTCCTAGGCCACTGGGACAGGGATGGGAACTAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAAGGGGCCAGGGGAGATTaGCAGCAGTGTGGGCGAGGT +
Preference number: 5 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQGARGD*QQCGRG
Trigger: ACCTCGCCCACACTGCTGCAAATCTCCCCTGGCCCC...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GTACTTCTCGGGGTAGTAAACAGCGTGGTCCACAGCCCCCTTTCAGGACCCTCAGGCCCAAACCCCTCTTaGGCTAGCTCCTGGCTCTTG +
Preference number: 5 (lower is better)
Translates to: VLLGVVNSVVHSPLSGPSGPNPS*ASSWLL
Trigger: CAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGCC...TGAGGGTCCTGAAAGGGGGCTGTGGACCACGCTGTTTACTACCCCGAGAAGTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACCCCTCCTCCTCTTCCTaGGCCCGCATACTTGACTGC +
Preference number: 5 (lower is better)
Translates to: GTPWPERHLHPEALVLTHPSSSS*ARILDC
Trigger: GCAGTCAAGTATGCGGGCCAAGGAAGAGGAGGAGGG...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 90 bp CTGGTCCAGCACAGCAGAATCCTTTGGCCTCTTGGTGTCCACACTTaGGCCAAGCTGGGACGCTGGAAGCACAGACTGGATGCCACCAGA +
Preference number: 5 (lower is better)
Translates to: LVQHSRILWPLGVHT*AKLGRWKHRLDATR
Trigger: TCTGGTGGCATCCAGTCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGCTGGACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS TCA 90 bp CGTCTCTCTGGCTCAGCTCACGCTCACGCTGCAGGAGCAGGCCAATaGGCTCATCATGAGTCAGGTGATAGTACTTGGCCGACTGGTCCA +
Preference number: 5 (lower is better)
Translates to: RLSGSAHAHAAGAGQ*AHHESGDSTWPTGP
Trigger: TGGACCAGTCGGCCAAGTACTATCACCTGACTCATGATGAGCTCATTGGCCTGCTCCTGCAGCGTGAGCGTGAGCTGAGCCAGAGAGACG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAACCTCCAGGGCGCTGCTaGGAAGAATCGCTGAGGCAG +
Preference number: 5 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQPPGRC*EESLRQ
Trigger: CTGCCTCAGCGATTCTTCCAAGCAGCGCCCTGGAGG...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTGAGTTGAGGAACGGGTaGGTGACCCCCAAGAATCCG +
Preference number: 5 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVELRNG*VTPKNP
Trigger: CGGATTCTTGGGGGTCACCAACCCGTTCCTCAACTC...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 90 bp GGGAAGGCAGGTTCTGGGGGTGTGGGCAACTCTTCTGGACCAGAGTaGATAGAGGATCCCCTTGACCCTGGTGGTGATATGGATGGGAAG +
Preference number: 5 (lower is better)
Translates to: GKAGSGGVGNSSGPE*IEDPLDPGGDMDGK
Trigger: CTTCCCATCCATATCACCACCAGGGTCAAGGGGATCCTCTATTCACTCTGGTCCAGAAGAGTTGCCCACACCCCCAGAACCTGCCTTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 90 bp GGTCCAGTTCTGAGTCCACAGAAACCTTGGGCTCTAGCCATATGTTaGTTCCTCTTCTTCCTCTCCCAGGCTCTCCCTGGGGCTCTGTCG +
Preference number: 5 (lower is better)
Translates to: GPVLSPQKPWALAIC*FLFFLSQALPGALS
Trigger: CGACAGAGCCCCAGGGAGAGCCTGGGAGAGGAAGAAGAGGAAGCAACATATGGCTAGAGCCCAAGGTTTCTGTGGACTCAGAACTGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 90 bp AGTACTTGGCCGACTGGTCCAGCACAGCAGAATCCTTTGGCCTCTTaGTGTCCACACTTGAGCCAAGCTGGGACGCTGGAAGCACAGACT +
Preference number: 5 (lower is better)
Translates to: STWPTGPAQQNPLAS*CPHLSQAGTLEAQT
Trigger: AGTCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGCTGGACCAGTCGGCCAAGTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp GGACTGAGAGAGGCCCAAACCCCTCTTTGGCTAGCTCCTGGCTCTTaGTTTCAAAGCCCTCCTCTGTCTCTGAGGTCCCCAAGACCTTCT +
Preference number: 5 (lower is better)
Translates to: GLREAQTPLWLAPGS*FQSPPLSLRSPRPS
Trigger: AGAAGGTCTTGGGGACCTCAGAGACAGAGGAGGGCTTTGAAACCAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGCCTCTCTCAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTATGCTGGCGCTCAGGTaGTTCCGTGTGAACTGGATG +
Preference number: 5 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVMLALR*FRVNWM
Trigger: CATCCAGTTCACACGGAACAACCTGAGCGCCAGCAT...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACGACTCTGTCCTTGAGCTaGCTGAAGGGAGACCGTGGC +
Preference number: 5 (lower is better)
Translates to: GQRDIYIQRLLSSPTKGTTLSLS*LKGDRG
Trigger: GCCACGGTCTCCCTTCAGCAAGCTCAAGGACAGAGT...CGTGCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTCCCTTCACTCTGTCCTaGAGCTTGCTGAAGGGAGAC +
Preference number: 5 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVPFTLS*SLLKGD
Trigger: GTCTCCCTTCAGCAAGCTCAAGGACAGAGTGAAGGG...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTATTGGCTTTGCCCATCTaGCCCAGGCTGCCTAACTCA +
Preference number: 5 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLLALPI*PRLPNS
Trigger: TGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCAA...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp ACCTCCAACACCCAAGGACTGACCCTACCCCCAAACTCTGGGAACTGGTGGCTACGGAGGAAGAAACCTTaGGCTTTGCCCATCTTGCCC +
Preference number: 5 (lower is better)
Translates to: TSNTQGLTLPPNSGNWWLRRKKP*ALPILP
Trigger: GGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCCG...TAGCCACCAGTTCCCAGAGTTTGGGGGTAGGGTCAGTCCTTGGGTGTTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACAACTCCGACTCAGCCCTaGGTGGTGGTGGTGATGGAA +
Preference number: 5 (lower is better)
Translates to: PASRQTHWSSITGTQGQTTPTQP*VVVVME
Trigger: TTCCATCACCACCACCACCAAGGGCTGAGTCGGAGT...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACATCTTGGTGTCCACACTaGAGCCAAGCTGGGACGCTG +
Preference number: 5 (lower is better)
Translates to: PASRQTHWSSITGTQGQTSWCPH*SQAGTL
Trigger: CAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGA...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTTTGCTCTGCAAGGAGTaGAGGAACGGGTTGGTGACC +
Preference number: 5 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVLLCKE*RNGLVT
Trigger: GGTCACCAACCCGTTCCTCAACTCCTTGCAGAGCAA...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTGCTAGCTCCTGGCTCTaGGTTTCAAAGCCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVASSWL*VSKPSS
Trigger: AGAGGAGGGCTTTGAAACCAAGAGCCAGGAGCTAGC...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 90 bp TGTTTCGGAGGAAGAAACCTTTGGCTTTGCCCATCTTGCCCAGGCTaGCTAACTCAGGATCCTCCAGGGCGCTGCTTGGAAGAATCGCTG +
Preference number: 5 (lower is better)
Translates to: CFGGRNLWLCPSCPG*LTQDPPGRCLEESL
Trigger: CAGCGATTCTTCCAAGCAGCGCCCTGGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCCGAAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp TTGGTGTCCACACTTGAGCCAAGCTGGGACGCTGGAAGCACAGACTaGATGCCACCAGATGTGACAGTTTTGAGCCTCTCCAGTCCGCTA +
Preference number: 5 (lower is better)
Translates to: LVSTLEPSWDAGSTD*MPPDVTVLSLSSPL
Trigger: TAGCGGACTGGAGAGGCTCAAAACTGTCACATCTGGTGGCATCCAGTCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCACTCTGTCCTTGAGCTaGCTGAAGGGAGACCGTGGC +
Preference number: 5 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGTLSLS*LKGDRG
Trigger: GCCACGGTCTCCCTTCAGCAAGCTCAAGGACAGAGT...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCACCCTTCACTCTGTCCTaGAGCTTGCTGAAGGGAGAC +
Preference number: 5 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPPFTLS*SLLKGD
Trigger: GTCTCCCTTCAGCAAGCTCAAGGACAGAGTGAAGGG...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAACCAAACCAGCTACTCTaGGCCTTTTCCTCCCCGGTG +
Preference number: 5 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQPNQLL*AFSSPV
Trigger: CACCGGGGAGGAAAAGGCCAAGAGTAGCTGGTTTGG...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GGGACACCATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACCCAGATGTGACAGTTTaGAGCCTCTCCAGTCCGCTA +
Preference number: 5 (lower is better)
Translates to: GTPWPERHLHPEALVLTHPDVTV*SLSSPL
Trigger: TAGCGGACTGGAGAGGCTCAAAACTGTCACATCTGG...GTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATGGTGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATCTTGGTGTCCACACTaGAGCCAAGCTGGGACGCTG +
Preference number: 5 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQSWCPH*SQAGTL
Trigger: CAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGA...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 90 bp TGCCCATCTTGCCCAGGCTGCCTAACTCAGGATCCTCCAGGGCGCTaGTTGGAAGAATCGCTGAGGCAGATTCGAGATCATACTTCTTCT +
Preference number: 5 (lower is better)
Translates to: CPSCPGCLTQDPPGR*LEESLRQIRDHTSS
Trigger: AGAAGAAGTATGATCTCGAATCTGCCTCAGCGATTCTTCCAAGCAGCGCCCTGGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 90 bp ACAGCAGAATCCTTTGGCCTCTTGGTGTCCACACTTGAGCCAAGCTaGGACGCTGGAAGCACAGACTGGATGCCACCAGATGTGACAGTT +
Preference number: 5 (lower is better)
Translates to: TAESFGLLVSTLEPS*DAGSTDWMPPDVTV
Trigger: AACTGTCACATCTGGTGGCATCCAGTCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp TCAAGGGAGGACCAGGAAGTGGGAAGGCGGCTTAGGACACCTCCAAAGCAGGTTAAGGGAGACCGTGGCTaGTCCTTCATGGAAAGATCA +
Preference number: 5 (lower is better)
Translates to: SREDQEVGRRLRTPPKQVKGDRG*SFMERS
Trigger: TGATCTTTCCATGAAGGACAAGCCACGGTCTCCCTT...AACCTGCTTTGGAGGTGTCCTAAGCCGCCTTCCCACTTCCTGGTCCTCCCTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCTTGGCTTTGCCCATCTaGCCCAGGCTGCCTAACTCA +
Preference number: 5 (lower is better)
Translates to: LHLNALQPSQARQEGLVSLALPI*PRLPNS
Trigger: TGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCAA...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GTACTTCTCGGGGTAGTAAACAGCGTGGTCCACAGCCCCCTTTCAGGACCCTCAGAGGACTTGCGTAGCTaGTTTCGGAGGAAGAAACCT +
Preference number: 5 (lower is better)
Translates to: VLLGVVNSVVHSPLSGPSEDLRS*FRRKKP
Trigger: AGGTTTCTTCCTCCGAAACAAGCTACGCAAGTCCTC...TGAGGGTCCTGAAAGGGGGCTGTGGACCACGCTGTTTACTACCCCGAGAAGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGGCCCCTTTGGCCTGCTaGCTCAGCTCCTCCTGTCCA +
Preference number: 5 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLAPLAC*LSSSCP
Trigger: TGGACAGGAGGAGCTGAGCAAGCAGGCCAAAGGGGC...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GTCCAGCATAACTGGGACCCAAGGTCAGACACAGTAAGGTGCAGGATAGCCCCAGAATCCTTTGGCCTCTaGGTGTCCACACTTGAGCCA +
Preference number: 5 (lower is better)
Translates to: VQHNWDPRSDTVRCRIAPESFGL*VSTLEP
Trigger: TGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTC...TGGGGCTATCCTGCACCTTACTGTGTCTGACCTTGGGTCCCAGTTATGCTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCGCACAGCAGAATCCTTaGGCCTCTTGGTGTCCACAC +
Preference number: 5 (lower is better)
Translates to: LHLNALQPSQARQEGLVSAQQNP*ASWCPH
Trigger: GTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGC...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CATGGCCAGAGAGACATCTACATCCAGAGGCTCTTGTCCTCACCCACAAAAGGCTCCTCGAAGAAGGGGTaGCTCTGCAAGGAGTTGAGG +
Preference number: 5 (lower is better)
Translates to: HGQRDIYIQRLLSSPTKGSSKKG*LCKELR
Trigger: CCTCAACTCCTTGCAGAGCAACCCCTTCTTCGAGGA...GCCTTTTGTGGGTGAGGACAAGAGCCTCTGGATGTAGATGTCTCTCTGGCCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 90 bp CACCTGGGAAGAAAGTACCCCGTCGGATTCTCCCTTCATGACAGGTaGAGCGACCTCTGCTGTAGGAGAAATGGTGATCACATCCCAAGG +
Preference number: 5 (lower is better)
Translates to: HLGRKYPVGFSLHDR*SDLCCRRNGDHIPR
Trigger: CCTTGGGATGTGATCACCATTTCTCCTACAGCAGAGGTCGCTTCACCTGTCATGAAGGGAGAATCCGACGGGGTACTTTCTTCCCAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp AGGTGCCAGAAGGCAATGGAGATGAAGAGTTGGTCAAGAGGAGAAACAAATGACGCCCGGCCCAGAAACTaGTCCACGCCGATGAGTGAG +
Preference number: 5 (lower is better)
Translates to: RCQKAMEMKSWSRGETNDARPRN*STPMSE
Trigger: CTCACTCATCGGCGTGGACAAGTTTCTGGGCCGGGC...GTCATTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATTGCCTTCTGGCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACAAAGGGAGACCGTGGCTaGTCCTTCATGGAAAGATCA +
Preference number: 5 (lower is better)
Translates to: PASRQTHWSSITGTQGQTKGDRG*SFMERS
Trigger: TGATCTTTCCATGAAGGACAAGCCACGGTCTCCCTT...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp AGGTGTCTCCTAAAGCAGAATGAAGCCTCCTGCTTCCAGACAAACCCACTGGTCCGGAGGAAGAAACCTTaGGCTTTGCCCATCTTGCCC +
Preference number: 5 (lower is better)
Translates to: RCLLKQNEASCFQTNPLVRRKKP*ALPILP
Trigger: GGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCCG...GACCAGTGGGTTTGTCTGGAAGCAGGAGGCTTCATTCTGCTTTAGGAGACACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTCCAGACAAACCCACTGGTCCAGCATAACTGGGACCCAAGGTCAGACAGAGGACTTGCGTAGCTaGTTTCGGAGGAAGAAACCT +
Preference number: 5 (lower is better)
Translates to: PASRQTHWSSITGTQGQTEDLRS*FRRKKP
Trigger: AGGTTTCTTCCTCCGAAACAAGCTACGCAAGTCCTC...TGTCTGACCTTGGGTCCCAGTTATGCTGGACCAGTGGGTTTGTCTGGAAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CTTCACTTGAATGCACTTCAGCCAAGCCAGGCAAGACAGGAGGGATTGGTGAGCAGTGCTATGTCGGCTTaGAGATCCTCGAAGAAGGGG +
Preference number: 5 (lower is better)
Translates to: LHLNALQPSQARQEGLVSSAMSA*RSSKKG
Trigger: CCCCTTCTTCGAGGATCTCAAAGCCGACATAGCACT...GCTCACCAATCCCTCCTGTCTTGCCTGGCTTGGCTGAAGTGCATTCAAGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 90 bp TTTAGTGCTATGTCGGCTTTGAGATCCTCGAAGAAGGGGTTGCTCTaGAAGGAGTTGAGGAACGGGTTGGTGACCCCCAAGAATCCGGAT +
Preference number: 5 (lower is better)
Translates to: FSAMSALRSSKKGLL*KELRNGLVTPKNPD
Trigger: ATCCGGATTCTTGGGGGTCACCAACCCGTTCCTCAACTCCTTGCAGAGCAACCCCTTCTTCGAGGATCTCAAAGCCGACATAGCACTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCGACTGGGCTTCTGAGTaGGCTCCTTGGATTCTCTCA +
Preference number: 5 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPDWASE*APWILS
Trigger: TGAGAGAATCCAAGGAGCCAACTCAGAAGCCCAGTC...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060837.10
CDS-3UTR CAA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCCCAGCAGCAAAGATGTaGAAGGTGTCGTCCCACTCA +
Preference number: 5 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPPAAKM*KVSSHS
Trigger: TGAGTGGGACGACACCTTCAACATCTTTGCTGCTGG...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp CCTGCTTGCTGCCTGTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAAGAGTCCACAGAAACCTaGGGCTCTAGCCATATGTTG +
Preference number: 5 (lower is better)
Translates to: PACCLSGCTLQYVVRIRQESTET*GSSHML
Trigger: CAACATATGGCTAGAGCCCAAGGTTTCTGTGGACTC...TTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGACAGGCAGCAAGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp AGGTGCCAGAAGGCAATGGAGATGAAGAGTTGGTCAAGAGGAGAAACAAATGACACTCCGACTCAGCCCTaGGTGGTGGTGGTGATGGAA +
Preference number: 5 (lower is better)
Translates to: RCQKAMEMKSWSRGETNDTPTQP*VVVVME
Trigger: TTCCATCACCACCACCACCAAGGGCTGAGTCGGAGT...GTCATTTGTTTCTCCTCTTGACCAACTCTTCATCTCCATTGCCTTCTGGCACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GTTAACAGACATGAATGGAGGCCTGGTCCACAAAACATGAGCAGCCCCAAACCCGGCTCTAGCCATATGTaGCTTCCTCTTCTTCCTCTC +
Preference number: 5 (lower is better)
Translates to: VNRHEWRPGPQNMSSPKPGSSHM*LPLLPL
Trigger: GAGAGGAAGAAGAGGAAGCAACATATGGCTAGAGCC...GGGTTTGGGGCTGCTCATGTTTTGTGGACCAGGCCTCCATTCATGTCTGTTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS-3UTR CAA 90 bp GTCTGGCTGCACTCTGCAGTATGTGGTAAGGATCAGACAATGAACAAAACCCTGCCAGATGTGACAGTTTaGAGCCTCTCCAGTCCGCTA +
Preference number: 5 (lower is better)
Translates to: VWLHSAVCGKDQTMNKTLPDVTV*SLSSPL
Trigger: TAGCGGACTGGAGAGGCTCAAAACTGTCACATCTGG...CAGGGTTTTGTTCATTGTCTGATCCTTACCACATACTGCAGAGTGCAGCCAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 72 bp CTCAACCCGCTGGCCCGCAGCACGGTCACCTGGACATaGGTGGGCAGCCAGCGGGAGGATCCGGCCGCCGGC +
Preference number: 6 (lower is better)
Translates to: LNPLARSTVTWT*VGSQREDPAAG
Trigger: GCCGGCGGCCGGATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGACCGTGCTGCGGGCCAGCGGGTTGAG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp ACCCGCTGGCCCGCAGCACGGTCACCTGGACATGCGTaGGCAGCCAGCGGGAGGATCCGGCCGCCGGCTCAG +
Preference number: 6 (lower is better)
Translates to: TRWPAARSPGHA*AASGRIRPPAQ
Trigger: CTGAGCCGGCGGCCGGATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGACCGTGCTGCGGGCCAGCGGGT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp TTGCCCCTCAACCCGCTGGCCCGCAGCACGGTCACCTaGACATGCGTGGGCAGCCAGCGGGAGGATCCGGCC +
Preference number: 6 (lower is better)
Translates to: LPLNPLARSTVT*TCVGSQREDPA
Trigger: GGCCGGATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGACCGTGCTGCGGGCCAGCGGGTTGAGGGGCAA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp TGCTGCCGGCGCCCGAGCTCTTGCCCCTCAACCCGCTaGCCCGCAGCACGGTCACCTGGACATGCGTGGGCA +
Preference number: 6 (lower is better)
Translates to: CCRRPSSCPSTR*PAARSPGHAWA
Trigger: TGCCCACGCATGTCCAGGTGACCGTGCTGCGGGCCAGCGGGTTGAGGGGCAAGAGCTCGGGCGCCGGCAGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp AGAGGTCAAGGGCCAGGCTATAGGCAGGGGAGGGCATaGAGGGCCTGGCACGCCGTGGCGGTGGCTGGCCCA +
Preference number: 6 (lower is better)
Translates to: RGQGPGYRQGRA*RAWHAVAVAGP
Trigger: TGGGCCAGCCACCGCCACGGCGTGCCAGGCCCTCCATGCCCTCCCCTGCCTATAGCCTGGCCCTTGACCTCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 72 bp ACCCCCTTCAGTGGACAGCCAGCTGCTGTGGCTTGGTaGGCGGGTGAGGAGCTCCGCCCCGGGTCCCTGGTA +
Preference number: 6 (lower is better)
Translates to: TPFSGQPAAVAW*AGEELRPGSLV
Trigger: TACCAGGGACCCGGGGCGGAGCTCCTCACCCGCTCACCAAGCCACAGCAGCTGGCTGTCCACTGAAGGGGGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 72 bp GTGAAGCCTGTACCACTGCGTGTGCTGGGCGCGGCCTaGGCGGAAGACCTCGTCCAGAGCTACGGTTGCCCG +
Preference number: 6 (lower is better)
Translates to: VKPVPLRVLGAA*AEDLVQSYGCP
Trigger: CGGGCAACCGTAGCTCTGGACGAGGTCTTCCGCGCAGGCCGCGCCCAGCACACGCAGTGGTACAGGCTTCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp GAGTCCCTACCCCCTTCAGTGGACAGCCAGCTGCTGTaGCTTGGTGAGCGGGTGAGGAGCTCCGCCCCGGGT +
Preference number: 6 (lower is better)
Translates to: ESLPPSVDSQLL*LGERVRSSAPG
Trigger: ACCCGGGGCGGAGCTCCTCACCCGCTCACCAAGCCACAGCAGCTGGCTGTCCACTGAAGGGGGTAGGGACTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp GGGCCCCCTCCTCCTCTCCAGAGCAACTGGCCCCTTTaGCCTGCTTGCTCAGCTCCTCCTGTCCAGGCACTG +
Preference number: 6 (lower is better)
Translates to: GPPPPLQSNWPL*PACSAPPVQAL
Trigger: CAGTGCCTGGACAGGAGGAGCTGAGCAAGCAGGCCAAAGGGGCCAGTTGCTCTGGAGAGGAGGAGGGGGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp CGGGTAACCGGGCCCCCTCCTCCTCTCCAGAGCAACTaGCCCCTTTGGCCTGCTTGCTCAGCTCCTCCTGTC +
Preference number: 6 (lower is better)
Translates to: RVTGPPPPLQSN*PLWPACSAPPV
Trigger: GACAGGAGGAGCTGAGCAAGCAGGCCAAAGGGGCCAGTTGCTCTGGAGAGGAGGAGGGGGCCCGGTTACCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp GAGGCGTGGTGGCTTGGGAGGTGGAGGGCCAAGCCATaGCCCCTCATCCAATCCCTGCTCTGGCTCTGGCTC +
Preference number: 6 (lower is better)
Translates to: EAWWLGRWRAKP*PLIQSLLWLWL
Trigger: GAGCCAGAGCCAGAGCAGGGATTGGATGAGGGGCCATGGCTTGGCCCTCCACCTCCCAAGCCACCACGCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 72 bp CGGGCCCCCTCCTCCTCTCCAGAGCAACTGGCCCCTTaGGCCTGCTTGCTCAGCTCCTCCTGTCCAGGCACT +
Preference number: 6 (lower is better)
Translates to: RAPSSSPEQLAP*ACLLSSSCPGT
Trigger: AGTGCCTGGACAGGAGGAGCTGAGCAAGCAGGCCAAAGGGGCCAGTTGCTCTGGAGAGGAGGAGGGGGCCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp TCGGGTAACCGGGCCCCCTCCTCCTCTCCAGAGCAACTGGCCCCTTaGGCCTGCTTGCTCAGCTCCTCCTGTCCAGGCACTGCCTCTGAG +
Preference number: 6 (lower is better)
Translates to: SGNRAPSSSPEQLAP*ACLLSSSCPGTASE
Trigger: CTCAGAGGCAGTGCCTGGACAGGAGGAGCTGAGCAAGCAGGCCAAAGGGGCCAGTTGCTCTGGAGAGGAGGAGGGGGCCCGGTTACCCGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp CCCATTGACGCAGAGGGAAGAGCGGGAGGCACCATCAAGGTGGCCTaGGAGCTCAAGAAGGGCCCGGGGAGGAGCTGCTCGAAGCTGGCT +
Preference number: 6 (lower is better)
Translates to: PIDAEGRAGGTIKVA*ELKKGPGRSCSKLA
Trigger: AGCCAGCTTCGAGCAGCTCCTCCCCGGGCCCTTCTTGAGCTCCAAGGCCACCTTGATGGTGCCTCCCGCTCTTCCCTCTGCGTCAATGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp TCTGCCCCGCTCCCCCTTCTGAGGCAGGAAGCTCCCGGTCTGGTGTaGAGGCTGAGGCTTGCAGGTGCAACTGGGATGCCCTGGAGGATG +
Preference number: 6 (lower is better)
Translates to: SAPLPLLRQEAPGLV*RLRLAGATGMPWRM
Trigger: CATCCTCCAGGGCATCCCAGTTGCACCTGCAAGCCTCAGCCTCAACACCAGACCGGGAGCTTCCTGCCTCAGAAGGGGGAGCGGGGCAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 72 bp GGTTGCCCGGCCCAGAAACTTGTCCACGCCGATGAGTaGGCGATGCATGGTGGTGAGCACGAGCTCGCAGGC +
Preference number: 6 (lower is better)
Translates to: GCPAQKLVHADE*AMHGGEHELAG
Trigger: GCCTGCGAGCTCGTGCTCACCACCATGCATCGCTCACTCATCGGCGTGGACAAGTTTCTGGGCCGGGCAACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 72 bp CGGCCCAGAAACTTGTCCACGCCGATGAGTGAGCGATaGATGGTGGTGAGCACGAGCTCGCAGGCGGCGTTG +
Preference number: 6 (lower is better)
Translates to: RPRNLSTPMSER*MVVSTSSQAAL
Trigger: CAACGCCGCCTGCGAGCTCGTGCTCACCACCATGCATCGCTCACTCATCGGCGTGGACAAGTTTCTGGGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 72 bp GAGCTGAACAGAGATGCCCCACTATCTGCTGGACTCTaGCCCGCTCCCCCTTCTGAGGCAGGAAGCTCCCGG +
Preference number: 6 (lower is better)
Translates to: ELNRDAPLSAGL*PAPPSEAGSSR
Trigger: CCGGGAGCTTCCTGCCTCAGAAGGGGGAGCGGGGCAGAGTCCAGCAGATAGTGGGGCATCTCTGTTCAGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 72 bp TTGACGCAGAGGGAAGAGCGGGAGGCACCATCAAGGTaGCCTTGGAGCTCAAGAAGGGCCCGGGGAGGAGCT +
Preference number: 6 (lower is better)
Translates to: LTQREEREAPSR*PWSSRRARGGA
Trigger: AGCTCCTCCCCGGGCCCTTCTTGAGCTCCAAGGCCACCTTGATGGTGCCTCCCGCTCTTCCCTCTGCGTCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp CTCCTCCACCTGAGAATTGGTGGGTGTGAAGAGGCGTaGTGGCTTGGGAGGTGGAGGGCCAAGCCATGGCCC +
Preference number: 6 (lower is better)
Translates to: LLHLRIGGCEEA*WLGRWRAKPWP
Trigger: GGGCCATGGCTTGGCCCTCCACCTCCCAAGCCACCACGCCTCTTCACACCCACCAATTCTCAGGTGGAGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 90 bp GCGCGGAAGACCTCGTCCAGAGCTACGGTTGCCCGGCCCAGAAACTaGTCCACGCCGATGAGTGAGCGATGCATGGTGGTGAGCACGAGC +
Preference number: 6 (lower is better)
Translates to: ARKTSSRATVARPRN*STPMSERCMVVSTS
Trigger: GCTCGTGCTCACCACCATGCATCGCTCACTCATCGGCGTGGACAAGTTTCTGGGCCGGGCAACCGTAGCTCTGGACGAGGTCTTCCGCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp ATCCCACTCCCGGCCTCTTGCTGCAGCCTGCCAGCAGCAAAGATGTaGAAGGTGTCGTCCCACTCAGGCAGGGCTTTCCCAGGGGAGGCC +
Preference number: 6 (lower is better)
Translates to: IPLPASCCSLPAAKM*KVSSHSGRAFPGEA
Trigger: GGCCTCCCCTGGGAAAGCCCTGCCTGAGTGGGACGACACCTTCAACATCTTTGCTGCTGGCAGGCTGCAGCAAGAGGCCGGGAGTGGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 90 bp CTCCAGCCCCATTCCTGCAGGGGCCAGGATCCCACTCCCGGCCTCTaGCTGCAGCCTGCCAGCAGCAAAGATGTTGAAGGTGTCGTCCCA +
Preference number: 6 (lower is better)
Translates to: LQPHSCRGQDPTPGL*LQPASSKDVEGVVP
Trigger: TGGGACGACACCTTCAACATCTTTGCTGCTGGCAGGCTGCAGCAAGAGGCCGGGAGTGGGATCCTGGCCCCTGCAGGAATGGGGCTGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 72 bp AGCTCCCGGTCTGGTGTTGAGGCTGAGGCTTGCAGGTaGAACTGGGATGCCCTGGAGGATGGACCACTCCCT +
Preference number: 6 (lower is better)
Translates to: SSRSGVEAEACR*NWDALEDGPLP
Trigger: AGGGAGTGGTCCATCCTCCAGGGCATCCCAGTTGCACCTGCAAGCCTCAGCCTCAACACCAGACCGGGAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 72 bp GCAGGAAGCTCCCGGTCTGGTGTTGAGGCTGAGGCTTaGAGGTGCAACTGGGATGCCCTGGAGGATGGACCA +
Preference number: 6 (lower is better)
Translates to: AGSSRSGVEAEA*RCNWDALEDGP
Trigger: TGGTCCATCCTCCAGGGCATCCCAGTTGCACCTGCAAGCCTCAGCCTCAACACCAGACCGGGAGCTTCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 72 bp CTGGCTCCAGCAATGCTGGGAGCCCTTCGCTCCCCATaGGGGGCACAGTATCTGGAGATTCAGGCTGCACCT +
Preference number: 6 (lower is better)
Translates to: LAPAMLGALRSP*GAQYLEIQAAP
Trigger: AGGTGCAGCCTGAATCTCCAGATACTGTGCCCCCCATGGGGAGCGAAGGGCTCCCAGCATTGCTGGAGCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 90 bp GAGACCCCTCCTCAGAGGACCGAGGTGGGACACTGTGTAAGGAGCTaGAAGGTGGAAAGGGGCCTGAGATGGAGCTGCGGTGCCGTAAGG +
Preference number: 6 (lower is better)
Translates to: ETPPQRTEVGHCVRS*KVERGLRWSCGAVR
Trigger: CCTTACGGCACCGCAGCTCCATCTCAGGCCCCTTTCCACCTTCAAGCTCCTTACACAGTGTCCCACCTCGGTCCTCTGAGGAGGGGTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS TCA 72 bp CGGCCTCTTGCTGCAGCCTGCCAGCAGCAAAGATGTTaGAGGTGTCGTCCCACTCAGGCAGGGCTTTCCCAG +
Preference number: 6 (lower is better)
Translates to: RPLAAACQQQRC*RCRPTQAGLSQ
Trigger: CTGGGAAAGCCCTGCCTGAGTGGGACGACACCTTCAACATCTTTGCTGCTGGCAGGCTGCAGCAAGAGGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 72 bp AGCTCAAGAAGGGCCCGGGGAGGAGCTGCTCGAAGCTaGCTGGCCTCATCACTGTATGTCCTCTTGTGGGTG +
Preference number: 6 (lower is better)
Translates to: SSRRARGGAARS*LASSLYVLLWV
Trigger: CACCCACAAGAGGACATACAGTGATGAGGCCAGCCAGCTTCGAGCAGCTCCTCCCCGGGCCCTTCTTGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp CCCTCCTCCTCTTCCTTGGCCCGCATACTTGACTGCTaGGAGGGGACTGAGAGAGGCCCAAACCCCTCTTTG +
Preference number: 6 (lower is better)
Translates to: PSSSSLARILDC*EGTERGPNPSL
Trigger: CAAAGAGGGGTTTGGGCCTCTCTCAGTCCCCTCCCAGCAGTCAAGTATGCGGGCCAAGGAAGAGGAGGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 72 bp CCTCTTCCTCCTCTTCCTCCCCCTCCTCCTCTTCCTTaGCCCGCATACTTGACTGCTGGGAGGGGACTGAGA +
Preference number: 6 (lower is better)
Translates to: PLPPLPPPPPLP*PAYLTAGRGLR
Trigger: TCTCAGTCCCCTCCCAGCAGTCAAGTATGCGGGCCAAGGAAGAGGAGGAGGGGGAGGAAGAGGAGGAAGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 72 bp ACCTCGTCCAGAGCTACGGTTGCCCGGCCCAGAAACTaGTCCACGCCGATGAGTGAGCGATGCATGGTGGTG +
Preference number: 6 (lower is better)
Translates to: TSSRATVARPRN*STPMSERCMVV
Trigger: CACCACCATGCATCGCTCACTCATCGGCGTGGACAAGTTTCTGGGCCGGGCAACCGTAGCTCTGGACGAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS TCA 72 bp CAGGGGAGATTTGCAGCAGTGTGGGCGAGGTCTCCATaGTCCGCACCAGCAGCCGGTCAATGTAGCTCTCCA +
Preference number: 6 (lower is better)
Translates to: QGRFAAVWARSP*SAPAAGQCSSP
Trigger: TGGAGAGCTACATTGACCGGCTGCTGGTGCGGATCATGGAGACCTCGCCCACACTGCTGCAAATCTCCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp GCTGGGAGGGGACTGAGAGAGGCCCAAACCCCTCTTTaGCTAGCTCCTGGCTCTTGGTTTCAAAGCCCTCCT +
Preference number: 6 (lower is better)
Translates to: AGRGLREAQTPL*LAPGSWFQSPP
Trigger: AGGAGGGCTTTGAAACCAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGCCTCTCTCAGTCCCCTCCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 72 bp CCTCAGAGGACCGAGGTGGGACACTGTGTAAGGAGCTaGAAGGTGGAAAGGGGCCTGAGATGGAGCTGCGGT +
Preference number: 6 (lower is better)
Translates to: PQRTEVGHCVRS*KVERGLRWSCG
Trigger: ACCGCAGCTCCATCTCAGGCCCCTTTCCACCTTCAAGCTCCTTACACAGTGTCCCACCTCGGTCCTCTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 72 bp CCGCACCAGCAGCCGGTCAATGTAGCTCTCCAGTTCTaGCACATGCTCGTCTCTCTGGCTCAGCTCACGCTC +
Preference number: 6 (lower is better)
Translates to: PHQQPVNVALQF*HMLVSLAQLTL
Trigger: GAGCGTGAGCTGAGCCAGAGAGACGAGCATGTGCAAGAACTGGAGAGCTACATTGACCGGCTGCTGGTGCGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 72 bp TGCTGGGAGGGGACTGAGAGAGGCCCAAACCCCTCTTaGGCTAGCTCCTGGCTCTTGGTTTCAAAGCCCTCC +
Preference number: 6 (lower is better)
Translates to: CWEGTERGPNPS*ASSWLLVSKPS
Trigger: GGAGGGCTTTGAAACCAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGCCTCTCTCAGTCCCCTCCCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 90 bp GGAGGAGCTGCTCGAAGCTGGCTGGCCTCATCACTGTATGTCCTCTaGTGGGTGAGCAGCTTGGGGGACTGTATAGAGTCCCTACCCCCT +
Preference number: 6 (lower is better)
Translates to: GGAARSWLASSLYVL*WVSSLGDCIESLPP
Trigger: AGGGGGTAGGGACTCTATACAGTCCCCCAAGCTGCTCACCCACAAGAGGACATACAGTGATGAGGCCAGCCAGCTTCGAGCAGCTCCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp CTCCATGATCCGCACCAGCAGCCGGTCAATGTAGCTCTCCAGTTCTaGCACATGCTCGTCTCTCTGGCTCAGCTCACGCTCACGCTGCAG +
Preference number: 6 (lower is better)
Translates to: LHDPHQQPVNVALQF*HMLVSLAQLTLTLQ
Trigger: CTGCAGCGTGAGCGTGAGCTGAGCCAGAGAGACGAGCATGTGCAAGAACTGGAGAGCTACATTGACCGGCTGCTGGTGCGGATCATGGAG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp AGCTGGCTGGCCTCATCACTGTATGTCCTCTTGTGGGTGAGCAGCTaGGGGGACTGTATAGAGTCCCTACCCCCTTCAGTGGACAGCCAG +
Preference number: 6 (lower is better)
Translates to: SWLASSLYVLLWVSS*GDCIESLPPSVDSQ
Trigger: CTGGCTGTCCACTGAAGGGGGTAGGGACTCTATACAGTCCCCCAAGCTGCTCACCCACAAGAGGACATACAGTGATGAGGCCAGCCAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp ACTGGTCCAGCACAGCAGAATCCTTTGGCCTCTTGGTGTCCACACTaGAGCCAAGCTGGGACGCTGGAAGCACAGACTGGATGCCACCAG +
Preference number: 6 (lower is better)
Translates to: TGPAQQNPLASWCPH*SQAGTLEAQTGCHQ
Trigger: CTGGTGGCATCCAGTCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGCTGGACCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp GGGACTGAGAGAGGCCCAAACCCCTCTTTGGCTAGCTCCTGGCTCTaGGTTTCAAAGCCCTCCTCTGTCTCTGAGGTCCCCAAGACCTTC +
Preference number: 6 (lower is better)
Translates to: GTERGPNPSLASSWL*VSKPSSVSEVPKTF
Trigger: GAAGGTCTTGGGGACCTCAGAGACAGAGGAGGGCTTTGAAACCAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGCCTCTCTCAGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 72 bp GGGGCTGAGGTTCCTCATTGTACACATGGCTCCCATTaGCGCAGAGGGAAGAGCGGGAGGCACCATCAAGGT +
Preference number: 6 (lower is better)
Translates to: GAEVPHCTHGSH*RRGKSGRHHQG
Trigger: ACCTTGATGGTGCCTCCCGCTCTTCCCTCTGCGTCAATGGGAGCCATGTGTACAATGAGGAACCTCAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS TCA 72 bp GGCTCAGCTCACGCTCACGCTGCAGGAGCAGGCCAATaGGCTCATCATGAGTCAGGTGATAGTACTTGGCCG +
Preference number: 6 (lower is better)
Translates to: GSAHAHAAGAGQ*AHHESGDSTWP
Trigger: CGGCCAAGTACTATCACCTGACTCATGATGAGCTCATTGGCCTGCTCCTGCAGCGTGAGCGTGAGCTGAGCC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp CCGACTGGTCCAGCACAGCAGAATCCTTTGGCCTCTTaGTGTCCACACTTGAGCCAAGCTGGGACGCTGGAA +
Preference number: 6 (lower is better)
Translates to: PTGPAQQNPLAS*CPHLSQAGTLE
Trigger: TTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGCTGGACCAGTCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp ACTGTGTTCAGCTCCTGGAAAAGCTGGCTTCCATCTTaGGGGGCCTCCTCATCTCGGCCTCCAGGAGTGTCA +
Preference number: 6 (lower is better)
Translates to: TVFSSWKSWLPS*GASSSRPPGVS
Trigger: TGACACTCCTGGAGGCCGAGATGAGGAGGCCCCCCAAGATGGAAGCCAGCTTTTCCAGGAGCTGAACACAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 72 bp GAGGCCCAAACCCCTCTTTGGCTAGCTCCTGGCTCTTaGTTTCAAAGCCCTCCTCTGTCTCTGAGGTCCCCA +
Preference number: 6 (lower is better)
Translates to: EAQTPLWLAPGS*FQSPPLSLRSP
Trigger: TGGGGACCTCAGAGACAGAGGAGGGCTTTGAAACCAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 72 bp AGAGGCCCAAACCCCTCTTTGGCTAGCTCCTGGCTCTaGGTTTCAAAGCCCTCCTCTGTCTCTGAGGTCCCC +
Preference number: 6 (lower is better)
Translates to: RGPNPSLASSWL*VSKPSSVSEVP
Trigger: GGGGACCTCAGAGACAGAGGAGGGCTTTGAAACCAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 72 bp GTGCAACTGGGATGCCCTGGAGGATGGACCACTCCCTaGAGACCCAAAGGGTCCTGGGTCAGACATACTTGT +
Preference number: 6 (lower is better)
Translates to: VQLGCPGGWTTP*RPKGSWVRHTC
Trigger: ACAAGTATGTCTGACCCAGGACCCTTTGGGTCTTCAGGGAGTGGTCCATCCTCCAGGGCATCCCAGTTGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 72 bp GGGGGCCTCCTCATCTCGGCCTCCAGGAGTGTCATCTaGACCAGGAAATCTCTCCCACACACTGAGAACTTC +
Preference number: 6 (lower is better)
Translates to: GGLLISASRSVI*TRKSLPHTENF
Trigger: GAAGTTCTCAGTGTGTGGGAGAGATTTCCTGGTTCAGATGACACTCCTGGAGGCCGAGATGAGGAGGCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 72 bp TGCCCAGGCTGCCTAACTCAGGATCCTCCAGGGCGCTaGTTGGAAGAATCGCTGAGGCAGATTCGAGATCAT +
Preference number: 6 (lower is better)
Translates to: CPGCLTQDPPGR*LEESLRQIRDH
Trigger: ATGATCTCGAATCTGCCTCAGCGATTCTTCCAAGCAGCGCCCTGGAGGATCCTGAGTTAGGCAGCCTGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 72 bp TGTTTCGGAGGAAGAAACCTTTGGCTTTGCCCATCTTaGCCAGGCTGCCTAACTCAGGATCCTCCAGGGCGC +
Preference number: 6 (lower is better)
Translates to: CFGGRNLWLCPS*PGCLTQDPPGR
Trigger: GCGCCCTGGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCCGAAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp TCCTTTGGCCTCTTGGTGTCCACACTTGAGCCAAGCTaGGACGCTGGAAGCACAGACTGGATGCCACCAGAT +
Preference number: 6 (lower is better)
Translates to: SFGLLVSTLEPS*DAGSTDWMPPD
Trigger: ATCTGGTGGCATCCAGTCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 72 bp CTCGAACGAACACTCTTCGCACCATTCCGGGCAGCCTaGCGTCTTCTCCACTACCGAGGTGCTGTACTTCTC +
Preference number: 6 (lower is better)
Translates to: LERTLFAPFRAA*RLLHYRGAVLL
Trigger: GAGAAGTACAGCACCTCGGTAGTGGAGAAGACGCAAGGCTGCCCGGAATGGTGCGAAGAGTGTTCGTTCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 72 bp GCTCGAAGCTGGCTGGCCTCATCACTGTATGTCCTCTaGTGGGTGAGCAGCTTGGGGGACTGTATAGAGTCC +
Preference number: 6 (lower is better)
Translates to: ARSWLASSLYVL*WVSSLGDCIES
Trigger: GGACTCTATACAGTCCCCCAAGCTGCTCACCCACAAGAGGACATACAGTGATGAGGCCAGCCAGCTTCGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 72 bp GCACAGCAGAATCCTTTGGCCTCTTGGTGTCCACACTaGAGCCAAGCTGGGACGCTGGAAGCACAGACTGGA +
Preference number: 6 (lower is better)
Translates to: AQQNPLASWCPH*SQAGTLEAQTG
Trigger: TCCAGTCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 72 bp AGTACTTGGCCGACTGGTCCAGCACAGCAGAATCCTTaGGCCTCTTGGTGTCCACACTTGAGCCAAGCTGGG +
Preference number: 6 (lower is better)
Translates to: STWPTGPAQQNP*ASWCPHLSQAG
Trigger: CCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGCTGGACCAGTCGGCCAAGTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp TCAGGTGATAGTACTTGGCCGACTGGTCCAGCACAGCAGAATCCTTaGGCCTCTTGGTGTCCACACTTGAGCCAAGCTGGGACGCTGGAA +
Preference number: 6 (lower is better)
Translates to: SGDSTWPTGPAQQNP*ASWCPHLSQAGTLE
Trigger: TTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGCTGGACCAGTCGGCCAAGTACTATCACCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS TCA 72 bp CACAGCAGAATCCTTTGGCCTCTTGGTGTCCACACTTaGGCCAAGCTGGGACGCTGGAAGCACAGACTGGAT +
Preference number: 6 (lower is better)
Translates to: HSRILWPLGVHT*AKLGRWKHRLD
Trigger: ATCCAGTCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS TCA 72 bp GGTTCTGGGGGTGTGGGCAACTCTTCTGGACCAGAGTaGATAGAGGATCCCCTTGACCCTGGTGGTGATATG +
Preference number: 6 (lower is better)
Translates to: GSGGVGNSSGPE*IEDPLDPGGDM
Trigger: CATATCACCACCAGGGTCAAGGGGATCCTCTATTCACTCTGGTCCAGAAGAGTTGCCCACACCCCCAGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 72 bp TCGAACGAACACTCTTCGCACCATTCCGGGCAGCCTTaGGTCTTCTCCACTACCGAGGTGCTGTACTTCTCT +
Preference number: 6 (lower is better)
Translates to: SNEHSSHHSGQP*VFSTTEVLYFS
Trigger: AGAGAAGTACAGCACCTCGGTAGTGGAGAAGACGCAAGGCTGCCCGGAATGGTGCGAAGAGTGTTCGTTCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 72 bp ATGTCGGCTTTGAGATCCTCGAAGAAGGGGTTGCTCTaGAAGGAGTTGAGGAACGGGTTGGTGACCCCCAAG +
Preference number: 6 (lower is better)
Translates to: MSALRSSKKGLL*KELRNGLVTPK
Trigger: CTTGGGGGTCACCAACCCGTTCCTCAACTCCTTGCAGAGCAACCCCTTCTTCGAGGATCTCAAAGCCGACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 72 bp CTGAGTCCACAGAAACCTTGGGCTCTAGCCATATGTTaGTTCCTCTTCTTCCTCTCCCAGGCTCTCCCTGGG +
Preference number: 6 (lower is better)
Translates to: LSPQKPWALAIC*FLFFLSQALPG
Trigger: CCCAGGGAGAGCCTGGGAGAGGAAGAAGAGGAAGCAACATATGGCTAGAGCCCAAGGTTTCTGTGGACTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 72 bp AAGGGGTTTCACAGGGTGGGGACTGGGCTTCTGAGTTaGCTCCTTGGATTCTCTCAGGCCAAACCAGCTACT +
Preference number: 6 (lower is better)
Translates to: KGFHRVGTGLLS*LLGFSQAKPAT
Trigger: AGTAGCTGGTTTGGCCTGAGAGAATCCAAGGAGCCAACTCAGAAGCCCAGTCCCCACCCTGTGAAACCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060837.10
CDS CCA 72 bp ACACTTGAGCCAAGCTGGGACGCTGGAAGCACAGACTaGATGCCACCAGATGTGACAGTTTTGAGCCTCTCC +
Preference number: 6 (lower is better)
Translates to: TLEPSWDAGSTD*MPPDVTVLSLS
Trigger: GGAGAGGCTCAAAACTGTCACATCTGGTGGCATCCAGTCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CCA 72 bp ACTGAGAGAGGCCCAAACCCCTCTTTGGCTAGCTCCTaGCTCTTGGTTTCAAAGCCCTCCTCTGTCTCTGAG +
Preference number: 6 (lower is better)
Translates to: TERGPNPSLASS*LLVSKPSSVSE
Trigger: CTCAGAGACAGAGGAGGGCTTTGAAACCAAGAGCCAGGAGCTAGCCAAAGAGGGGTTTGGGCCTCTCTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 72 bp TTGTTTCGGAGGAAGAAACCTTTGGCTTTGCCCATCTaGCCCAGGCTGCCTAACTCAGGATCCTCCAGGGCG +
Preference number: 6 (lower is better)
Translates to: LFRRKKPLALPI*PRLPNSGSSRA
Trigger: CGCCCTGGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCCGAAACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp CCATCTTGCCCAGGCTGCCTAACTCAGGATCCTCCAGGGCGCTGCTaGGAAGAATCGCTGAGGCAGATTCGAGATCATACTTCTTCTTGC +
Preference number: 6 (lower is better)
Translates to: PSCPGCLTQDPPGRC*EESLRQIRDHTSSC
Trigger: GCAAGAAGAAGTATGATCTCGAATCTGCCTCAGCGATTCTTCCAAGCAGCGCCCTGGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp TGTGTGAGCGAGGACTTGCGTAGCTTGTTTCGGAGGAAGAAACCTTaGGCTTTGCCCATCTTGCCCAGGCTGCCTAACTCAGGATCCTCC +
Preference number: 6 (lower is better)
Translates to: CVSEDLRSLFRRKKP*ALPILPRLPNSGSS
Trigger: GGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCCGAAACAAGCTACGCAAGTCCTCGCTCACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp GAGCCCAGAGAGGTGTTAGACTGTGTGAGCGAGGACTTGCGTAGCTaGTTTCGGAGGAAGAAACCTTTGGCTTTGCCCATCTTGCCCAGG +
Preference number: 6 (lower is better)
Translates to: EPREVLDCVSEDLRS*FRRKKPLALPILPR
Trigger: CCTGGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCCGAAACAAGCTACGCAAGTCCTCGCTCACACAGTCTAACACCTCTCTGGGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 72 bp TTGAGATCCTCGAAGAAGGGGTTGCTCTGCAAGGAGTaGAGGAACGGGTTGGTGACCCCCAAGAATCCGGAT +
Preference number: 6 (lower is better)
Translates to: LRSSKKGLLCKE*RNGLVTPKNPD
Trigger: ATCCGGATTCTTGGGGGTCACCAACCCGTTCCTCAACTCCTTGCAGAGCAACCCCTTCTTCGAGGATCTCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 72 bp AGTGCTATGTCGGCTTTGAGATCCTCGAAGAAGGGGTaGCTCTGCAAGGAGTTGAGGAACGGGTTGGTGACC +
Preference number: 6 (lower is better)
Translates to: SAMSALRSSKKG*LCKELRNGLVT
Trigger: GGTCACCAACCCGTTCCTCAACTCCTTGCAGAGCAACCCCTTCTTCGAGGATCTCAAAGCCGACATAGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 72 bp CTCAGGATCCTCCAGGGCGCTGCTTGGAAGAATCGCTaGGGCAGATTCGAGATCATACTTCTTCTTGCCCTT +
Preference number: 6 (lower is better)
Translates to: LRILQGAAWKNR*GRFEIILLLAL
Trigger: AAGGGCAAGAAGAAGTATGATCTCGAATCTGCCTCAGCGATTCTTCCAAGCAGCGCCCTGGAGGATCCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS GCA 72 bp CTGAAGACCCAAAGGGTCCTGGGTCAGACATACTTGTaGTTGGCTGGTCCAGTTCTGAGTCCACAGAAACCT +
Preference number: 6 (lower is better)
Translates to: LKTQRVLGQTYL*LAGPVLSPQKP
Trigger: AGGTTTCTGTGGACTCAGAACTGGACCAGCCAAGCACAAGTATGTCTGACCCAGGACCCTTTGGGTCTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 72 bp GAGGACTTGCGTAGCTTGTTTCGGAGGAAGAAACCTTaGGCTTTGCCCATCTTGCCCAGGCTGCCTAACTCA +
Preference number: 6 (lower is better)
Translates to: EDLRSLFRRKKP*ALPILPRLPNS
Trigger: TGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCAAAGGTTTCTTCCTCCGAAACAAGCTACGCAAGTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp GGGAGAGAGGGAGCAGGTGAAGGAGAATTTAGTGCTATGTCGGCTTaGAGATCCTCGAAGAAGGGGTTGCTCTGCAAGGAGTTGAGGAAC +
Preference number: 6 (lower is better)
Translates to: GREGAGEGEFSAMSA*RSSKKGLLCKELRN
Trigger: GTTCCTCAACTCCTTGCAGAGCAACCCCTTCTTCGAGGATCTCAAAGCCGACATAGCACTAAATTCTCCTTCACCTGCTCCCTCTCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 90 bp GGAGAATTTAGTGCTATGTCGGCTTTGAGATCCTCGAAGAAGGGGTaGCTCTGCAAGGAGTTGAGGAACGGGTTGGTGACCCCCAAGAAT +
Preference number: 6 (lower is better)
Translates to: GEFSAMSALRSSKKG*LCKELRNGLVTPKN
Trigger: ATTCTTGGGGGTCACCAACCCGTTCCTCAACTCCTTGCAGAGCAACCCCTTCTTCGAGGATCTCAAAGCCGACATAGCACTAAATTCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS TCA 72 bp AGAAAGTACCCCGTCGGATTCTCCCTTCATGACAGGTaGAGCGACCTCTGCTGTAGGAGAAATGGTGATCAC +
Preference number: 6 (lower is better)
Translates to: RKYPVGFSLHDR*SDLCCRRNGDH
Trigger: GTGATCACCATTTCTCCTACAGCAGAGGTCGCTTCACCTGTCATGAAGGGAGAATCCGACGGGGTACTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CAA 72 bp GAGGTGTTAGACTGTGTGAGCGAGGACTTGCGTAGCTaGTTTCGGAGGAAGAAACCTTTGGCTTTGCCCATC +
Preference number: 6 (lower is better)
Translates to: EVLDCVSEDLRS*FRRKKPLALPI
Trigger: GATGGGCAAAGCCAAAGGTTTCTTCCTCCGAAACAAGCTACGCAAGTCCTCGCTCACACAGTCTAACACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS CAA 90 bp GAGGCAGATTCGAGATCATACTTCTTCTTGCCCTTCACTCTGTCCTaGAGCTTGCTGAAGGGAGACCGTGGCTTGTCCTTCATGGAAAGA +
Preference number: 6 (lower is better)
Translates to: EADSRSYFFLPFTLS*SLLKGDRGLSFMER
Trigger: TCTTTCCATGAAGGACAAGCCACGGTCTCCCTTCAGCAAGCTCAAGGACAGAGTGAAGGGCAAGAAGAAGTATGATCTCGAATCTGCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060837.10
ENSMUST00000204087.2
CDS TCA 72 bp GAGCAGGTGAAGGAGAATTTAGTGCTATGTCGGCTTTaGGATCCTCGAAGAAGGGGTTGCTCTGCAAGGAGT +
Preference number: 6 (lower is better)
Translates to: EQVKENLVLCRL*DPRRRGCSARS
Trigger: ACTCCTTGCAGAGCAACCCCTTCTTCGAGGATCTCAAAGCCGACATAGCACTAAATTCTCCTTCACCTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS CCA 72 bp AGGGCTACTAGTTTCTCCTACTGGGTCTTCAAGTTCTaGCTTACCTATCAGGGTTCCAGAGGGCAGTCTATG +
Preference number: 6 (lower is better)
Translates to: RATSFSYWVFKF*LTYQGSRGQSM
Trigger: CATAGACTGCCCTCTGGAACCCTGATAGGTAAGCCAGAACTTGAAGACCCAGTAGGAGAAACTAGTAGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2
CDS GCA 72 bp TCTGGCTTACCTATCAGGGTTCCAGAGGGCAGTCTATaGAATTTCTCCAACTCTGGATTTACCCATTCCTCC +
Preference number: 6 (lower is better)
Translates to: SGLPIRVPEGSL*NFSNSGFTHSS
Trigger: GGAGGAATGGGTAAATCCAGAGTTGGAGAAATTGCATAGACTGCCCTCTGGAACCCTGATAGGTAAGCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204087.2