RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAB11B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000077450

Ensembl transcript IDs: ENSMUST00000057373.14, ENSMUST00000172894.8, ENSMUST00000173860.8, ENSMUST00000173987.2

Found 270 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTCTTCCTGGGCCATTGGGCTGGCAGGCGGAGCTCACTTGGAGGGTaGGAGCAGCCTGTCCTAGAGGGACAAGGGAGGGGCCGGGAGGAC +
Preference number: 1 (lower is better)
Translates to: LFLGHWAGRRSSLGG*EQPVLEGQGRGRED
Trigger: GTCCTCCCGGCCCCTCCCTTGTCCCTCTAGGACAGGCTGCTCCCACCCTCCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 90 bp GGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTaGGCTGGCAGGCGGAGCTCACTTGGAGGGTGGGAGCAGCCTGTC +
Preference number: 1 (lower is better)
Translates to: GRTGEATGLLLFLGH*AGRRSSLGGWEQPV
Trigger: GACAGGCTGCTCCCACCCTCCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR GCA 90 bp AGGGCTGGCCAAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTaGAGGGCAAGCCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGC +
Preference number: 1 (lower is better)
Translates to: RAGQGSRTCTHAGSK*RASRAVVAHAFNPS
Trigger: GCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTTGGCCAGCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR GCA 90 bp ACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTaGTGGCACTGGCTATGGTGGTGTAGGCAGGAGGCAGAGCCCAGA +
Preference number: 1 (lower is better)
Translates to: TGRSRSAQAWECWRP*WHWLWWCRQEAEPR
Trigger: TCTGGGCTCTGCCTCCTGCCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 90 bp ACACTGGTGAAGGGCTGGCCAAGGATCGAGGACGTGCACGCACGCTaGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGCACGCCTT +
Preference number: 1 (lower is better)
Translates to: TLVKGWPRIEDVHAR*VKVQGKPGSGGARL
Trigger: AAGGCGTGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTTGGCCAGCCCTTCACCAGTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR CCA 90 bp AGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGGCTATaGTGGTGTAGGCAGGAGGCAGAGCCCAGAATGTCCACCTGCTCA +
Preference number: 1 (lower is better)
Translates to: SAQAWECWRPCWHWL*WCRQEAEPRMSTCS
Trigger: TGAGCAGGTGGACATTCTGGGCTCTGCCTCCTGCCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR GCA 90 bp GGAGACGAGACAGAGAAGTGGGGATGGGCAGAGGAGAGCGCTGCGTaGAGAGGAGGAGGGAGAGGGGCAAGGGTGTCTTCTCCCAGCATA +
Preference number: 1 (lower is better)
Translates to: GDETEKWGWAEESAA*RGGGRGARVSSPSI
Trigger: TATGCTGGGAGAAGACACCCTTGCCCCTCTCCCTCCTCCTCTGCACGCAGCGCTCTCCTCTGCCCATCCCCACTTCTCTGTCTCGTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR GCA 90 bp CAGCATAAATCTACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATaGTGGAGGCCGTGCTGGCACTGGCTATGGTGGTGTAGGCAGGAG +
Preference number: 1 (lower is better)
Translates to: QHKSTGRSRSAQAWE*WRPCWHWLWWCRQE
Trigger: CTCCTGCCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTAGATTTATGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 90 bp CATAAATCTACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTaGAGGCCGTGCTGGCACTGGCTATGGTGGTGTAGGCAGGAGGCA +
Preference number: 1 (lower is better)
Translates to: HKSTGRSRSAQAWEC*RPCWHWLWWCRQEA
Trigger: TGCCTCCTGCCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTAGATTTATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR TCA 90 bp ACTGCAGCTTGTTGGGTCTCTGTCCATCGGTGGTGGGTGGCACACTaGTGTCCACCACGTTGTTGCCAGGGGACTCATCGTGGGCTGCAC +
Preference number: 1 (lower is better)
Translates to: TAACWVSVHRWWVAH*CPPRCCQGTHRGLH
Trigger: GTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCACCACCGATGGACAGAGACCCAACAAGCTGCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR CCA 90 bp TTCTCCCAGCATAAATCTACAGGCAGGAGCAGGAGTGCGCAGGCCTaGGAATGCTGGAGGCCGTGCTGGCACTGGCTATGGTGGTGTAGG +
Preference number: 1 (lower is better)
Translates to: FSQHKSTGRSRSAQA*ECWRPCWHWLWWCR
Trigger: CCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTAGATTTATGCTGGGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 90 bp CTGGCAGCACTGCAGCTTGTTGGGTCTCTGTCCATCGGTGGTGGGTaGCACACTGATGTCCACCACGTTGTTGCCAGGGGACTCATCGTG +
Preference number: 1 (lower is better)
Translates to: LAALQLVGSLSIGGG*HTDVHHVVARGLIV
Trigger: CACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCACCACCGATGGACAGAGACCCAACAAGCTGCAGTGCTGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR TCA 90 bp TCTGATGCCTGGCTCTTCGGGTATCAGCTCAGAGAGAGTTTGGGATaGGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGAAAGGCG +
Preference number: 1 (lower is better)
Translates to: SDAWLFGYQLRESLG*GYRASWSTGQRGKA
Trigger: CGCCTTTCCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGAGCTGATACCCGAAGAGCCAGGCATCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 90 bp CAGCCTCTGATGCCTGGCTCTTCGGGTATCAGCTCAGAGAGAGTTTaGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGAA +
Preference number: 1 (lower is better)
Translates to: QPLMPGSSGISSERV*DEDTGPAGQLAREE
Trigger: TTCCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGAGCTGATACCCGAAGAGCCAGGCATCAGAGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR GCA 90 bp CAAAAGAAAAAGAAAGTGCAGGGCAGTCACAGGCTCTGGCAGCACTaGAGCTTGTTGGGTCTCTGTCCATCGGTGGTGGGTGGCACACTG +
Preference number: 1 (lower is better)
Translates to: QKKKKVQGSHRLWQH*SLLGLCPSVVGGTL
Trigger: CAGTGTGCCACCCACCACCGATGGACAGAGACCCAACAAGCTGCAGTGCTGCCAGAGCCTGTGACTGCCCTGCACTTTCTTTTTCTTTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR GCA 90 bp CTCTCCCCTCCTTGGAGCCCAAGATCCTTATCTCACAGCCTACTGTaGAAGATCAGCATGTCTGCCCACTGTCTTCAGCAGGTACTACGC +
Preference number: 1 (lower is better)
Translates to: LSPPWSPRSLSHSLL*KISMSAHCLQQVLR
Trigger: GCGTAGTACCTGCTGAAGACAGTGGGCAGACATGCTGATCTTGCACAGTAGGCTGTGAGATAAGGATCTTGGGCTCCAAGGAGGGGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 90 bp GCCAGGACTCCAGATAAGGAGTCCATTGTTGGCAGCAGATGGAAGTaGCAAGCATGCTCATGCTTCCCATTCACACCAGGGGGCATCCTA +
Preference number: 1 (lower is better)
Translates to: ARTPDKESIVGSRWK*QACSCFPFTPGGIL
Trigger: TAGGATGCCCCCTGGTGTGAATGGGAAGCATGAGCATGCTTGCCACTTCCATCTGCTGCCAACAATGGACTCCTTATCTGGAGTCCTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 90 bp GGCCAGCTGGTCAACTGGCCAGAGAGGAAAGGCGGTTTCGATCTCTaGAGTCTGGAAAACAGGAGAAGCAGGTTCCTTCCACTCATCTTC +
Preference number: 1 (lower is better)
Translates to: GQLVNWPERKGGFDL*SLENRRSRFLPLIF
Trigger: GAAGATGAGTGGAAGGAACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTCTCTGGCCAGTTGACCAGCTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 90 bp TCCATACTACAGGAGCCACTTGCAGAGGACTCACTCTCCCCTCCTTaGAGCCCAAGATCCTTATCTCACAGCCTACTGTGCAAGATCAGC +
Preference number: 1 (lower is better)
Translates to: SILQEPLAEDSLSPP*SPRSLSHSLLCKIS
Trigger: GCTGATCTTGCACAGTAGGCTGTGAGATAAGGATCTTGGGCTCCAAGGAGGGGAGAGTGAGTCCTCTGCAAGTGGCTCCTGTAGTATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 90 bp AATATCCAAGAGCAGGTACATAAGCAAGGGGCTTTTAGCTTCTCTTaGGCAGGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTG +
Preference number: 1 (lower is better)
Translates to: NIQEQVHKQGAFSFS*AGRTGEATGLLLFL
Trigger: CAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCCTGCTCAAGAGAAGCTAAAAGCCCCTTGCTTATGTACCTGCTCTTGGATATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR GCA 90 bp CTTCAGGTCACCATCATTTCCTTCCTCCATACTACAGGAGCCACTTaGAGAGGACTCACTCTCCCCTCCTTGGAGCCCAAGATCCTTATC +
Preference number: 1 (lower is better)
Translates to: LQVTIISFLHTTGAT*RGLTLPSLEPKILI
Trigger: GATAAGGATCTTGGGCTCCAAGGAGGGGAGAGTGAGTCCTCTGCAAGTGGCTCCTGTAGTATGGAGGAAGGAAATGATGGTGACCTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 90 bp AACAAGGGCAATGGGTTCTGGGAAGCGCCAGTGAAGATCAAGAGCTaGTCACCTTGTAGTCACTGTTGCCCTCTACTGTCCCCATCAAGT +
Preference number: 1 (lower is better)
Translates to: NKGNGFWEAPVKIKS*SPCSHCCPLLSPSS
Trigger: ACTTGATGGGGACAGTAGAGGGCAACAGTGACTACAAGGTGAGCAGCTCTTGATCTTCACTGGCGCTTCCCAGAACCCATTGCCCTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 90 bp GCCAGGGGACTCATCGTGGGCTGCACGGTCAGCGATTTGCTTCTGTaGCACAATACGGTAGATTTCTGTGAGGATGTTCTTGAATGCTTC +
Preference number: 1 (lower is better)
Translates to: ARGLIVGCTVSDLLL*HNTVDFCEDVLECF
Trigger: GAAGCATTCAAGAACATCCTCACAGAAATCTACCGTATTGTGTCACAGAAGCAAATCGCTGACCGTGCAGCCCACGATGAGTCCCCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR CCA 90 bp TGGTCAACTGGCCAGAGAGGAAAGGCGGTTTCGATCTCTGAAGTCTaGAAAACAGGAGAAGCAGGTTCCTTCCACTCATCTTCCTCACCT +
Preference number: 1 (lower is better)
Translates to: WSTGQRGKAVSISEV*KTGEAGSFHSSSSP
Trigger: AGGTGAGGAAGATGAGTGGAAGGAACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTCTCTGGCCAGTTGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR TCA 90 bp CTGAGCCACTGTGCCCAGCTTGGATCTGAGAGATGTATCTGGGATTaGCCACTTCCCTCTTCCAACACACACAAGGAGGCTACATTCATT +
Preference number: 1 (lower is better)
Translates to: LSHCAQLGSERCIWD*PLPSSNTHKEATFI
Trigger: AATGAATGTAGCCTCCTTGTGTGTGTTGGAAGAGGGAAGTGGTCAATCCCAGATACATCTCTCAGATCCAAGCTGGGCACAGTGGCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 90 bp GTTGGTTCTTCCAGTACGTCAACTCCATTGGCAGTTCCTGCGAGCTaGGTCTTAGACCTATGCTACCTCCTGCTTATGTCTGCTAGACAG +
Preference number: 1 (lower is better)
Translates to: VGSSSTSTPLAVPAS*VLDLCYLLLMSARQ
Trigger: CTGTCTAGCAGACATAAGCAGGAGGTAGCATAGGTCTAAGACTCAGCTCGCAGGAACTGCCAATGGAGTTGACGTACTGGAAGAACCAAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 90 bp ACGCTAACCTACTATTGGGGACACGTAAAAGGGCCCTGGTTCAGGTaGATCATTTGGTGGAGAGAAAGAAGACAGAAGCTGAGTGGTAGG +
Preference number: 1 (lower is better)
Translates to: TLTYYWGHVKGPWFR*IIWWRERRQKLSGR
Trigger: CCTACCACTCAGCTTCTGTCTTCTTTCTCTCCACCAAATGATGCACCTGAACCAGGGCCCTTTTACGTGTCCCCAATAGTAGGTTAGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 90 bp ACTTGGAGTTGGTTCTTCCAGTACGTCAACTCCATTGGCAGTTCCTaGGAGCTGAGTCTTAGACCTATGCTACCTCCTGCTTATGTCTGC +
Preference number: 1 (lower is better)
Translates to: TWSWFFQYVNSIGSS*ELSLRPMLPPAYVC
Trigger: GCAGACATAAGCAGGAGGTAGCATAGGTCTAAGACTCAGCTCGCAGGAACTGCCAATGGAGTTGACGTACTGGAAGAACCAACTCCAAGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 90 bp GCAGGTACTACGCTAACCTACTATTGGGGACACGTAAAAGGGCCCTaGTTCAGGTGCATCATTTGGTGGAGAGAAAGAAGACAGAAGCTG +
Preference number: 1 (lower is better)
Translates to: AGTTLTYYWGHVKGP*FRCIIWWRERRQKL
Trigger: CAGCTTCTGTCTTCTTTCTCTCCACCAAATGATGCACCTGAACCAGGGCCCTTTTACGTGTCCCCAATAGTAGGTTAGCGTAGTACCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 90 bp TATATACAAAACACGAAGATATTGCTTCACTTGCAGACAGGTTCCTaGCCAGACACGGAGACGAGACAGAGAAGTGGGGATGGGCAGAGG +
Preference number: 1 (lower is better)
Translates to: YIQNTKILLHLQTGS*PDTETRQRSGDGQR
Trigger: CCTCTGCCCATCCCCACTTCTCTGTCTCGTCTCCGTGTCTGGTCAGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTTTTGTATATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR GCA 90 bp ATTTCCTTCAGGGGTGGAGAAGAACACATCTCGTTACTTACTATCTaGTTTGGGTACAGGAACAAGGGCAATGGGTTCTGGGAAGCGCCA +
Preference number: 1 (lower is better)
Translates to: ISFRGGEEHISLLTI*FGYRNKGNGFWEAP
Trigger: TGGCGCTTCCCAGAACCCATTGCCCTTGTTCCTGTACCCAAAGCAGATAGTAAGTAACGAGATGTGTTCTTCTCCACCCCTGAAGGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 90 bp ATCACTGAAGAAGGTCAAGACAGGACCTCAAACAGGGTAAGGTCCTaGAGGCTGAAGCCAATGCAGAAGATGAGTGCTGCTTATCAGCTT +
Preference number: 1 (lower is better)
Translates to: ITEEGQDRTSNRVRS*RLKPMQKMSAAYQL
Trigger: AAGCTGATAAGCAGCACTCATCTTCTGCATTGGCTTCAGCCTCCAGGACCTTACCCTGTTTGAGGTCCTGTCTTGACCTTCTTCAGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 90 bp TATTGGGGACACGTAAAAGGGCCCTGGTTCAGGTGCATCATTTGGTaGAGAGAAAGAAGACAGAAGCTGAGTGGTAGGTTTCTGTACAGA +
Preference number: 1 (lower is better)
Translates to: YWGHVKGPWFRCIIW*RERRQKLSGRFLYR
Trigger: TCTGTACAGAAACCTACCACTCAGCTTCTGTCTTCTTTCTCTCCACCAAATGATGCACCTGAACCAGGGCCCTTTTACGTGTCCCCAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 90 bp TACTATTGGGGACACGTAAAAGGGCCCTGGTTCAGGTGCATCATTTaGTGGAGAGAAAGAAGACAGAAGCTGAGTGGTAGGTTTCTGTAC +
Preference number: 1 (lower is better)
Translates to: YYWGHVKGPWFRCII*WRERRQKLSGRFLY
Trigger: GTACAGAAACCTACCACTCAGCTTCTGTCTTCTTTCTCTCCACCAAATGATGCACCTGAACCAGGGCCCTTTTACGTGTCCCCAATAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 90 bp AAGATCATTTTAGTTGCCGTGACAAAGGGTTTGGGAGCAGGATATTaGAAAGAGGAGGGTCAGTTGGATAATTCGGCAGGTAAGGGTGCC +
Preference number: 1 (lower is better)
Translates to: KIILVAVTKGLGAGY*KEEGQLDNSAGKGA
Trigger: GGCACCCTTACCTGCCGAATTATCCAACTGACCCTCCTCTTTCCAATATCCTGCTCCCAAACCCTTTGTCACGGCAACTAAAATGATCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 90 bp CGATTTGGGAAAGGCTGGTACAACTTCTCCTTAAACTGTTCCAAGTaGAGGCTGCCACTTCAGGTCACCATCATTTCCTTCCTCCATACT +
Preference number: 1 (lower is better)
Translates to: RFGKGWYNFSLNCSK*RLPLQVTIISFLHT
Trigger: AGTATGGAGGAAGGAAATGATGGTGACCTGAAGTGGCAGCCTTCACTTGGAACAGTTTAAGGAGAAGTTGTACCAGCCTTTCCCAAATCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 90 bp GTTTCTGTACAGAAGTGGCTTATACATTTTAGTAACGGGCAACAGTaGAAGGGCTACAGGGAGAATAAGAGTTCGAGAGCTGGGGTTTGG +
Preference number: 1 (lower is better)
Translates to: VSVQKWLIHFSNGQQ*KGYRENKSSRAGVW
Trigger: CCAAACCCCAGCTCTCGAACTCTTATTCTCCCTGTAGCCCTTGCACTGTTGCCCGTTACTAAAATGTATAAGCCACTTCTGTACAGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 90 bp GTCAAAGACAGTTCTCCTCTAGCTGCTACACAGCTTCTGGCACTATaGAAGCTAGGCAGGAAGCTTCCAGATCAGTTCTCCTTGATTTTT +
Preference number: 1 (lower is better)
Translates to: VKDSSPLAATQLLAL*KLGRKLPDQFSLIF
Trigger: AAAAATCAAGGAGAACTGATCTGGAAGCTTCCTGCCTAGCTTTCATAGTGCCAGAAGCTGTGTAGCAGCTAGAGGAGAACTGTCTTTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 90 bp ACCAAAGGCTACAAGAGCAGTTGTATATACAAAACACGAAGATATTaGTTCACTTGCAGACAGGTTCCTGACCAGACACGGAGACGAGAC +
Preference number: 1 (lower is better)
Translates to: TKGYKSSCIYKTRRY*FTCRQVPDQTRRRD
Trigger: GTCTCGTCTCCGTGTCTGGTCAGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTTTTGTATATACAACTGCTCTTGTAGCCTTTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 90 bp TACAAGAGCAGTTGTATATACAAAACACGAAGATATTGCTTCACTTaGAGACAGGTTCCTGACCAGACACGGAGACGAGACAGAGAAGTG +
Preference number: 1 (lower is better)
Translates to: YKSSCIYKTRRYCFT*RQVPDQTRRRDREV
Trigger: CACTTCTCTGTCTCGTCTCCGTGTCTGGTCAGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTTTTGTATATACAACTGCTCTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 90 bp TTCCCAGCACTCACATGGCAGTTTACAACTATTTGTAACTCCAGTTaGCATGTTCATCTGACCTCTGTGGAAACTGCATGCATGTGGTAT +
Preference number: 1 (lower is better)
Translates to: FPALTWQFTTICNSS*HVHLTSVETACMWY
Trigger: ATACCACATGCATGCAGTTTCCACAGAGGTCAGATGAACATGTCAACTGGAGTTACAAATAGTTGTAAACTGCCATGTGAGTGCTGGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 90 bp TTTTATATCTTGGGCTTTCTCTTTTTCCTGTATAGTCCTGGAATTTaGTATGTAGACCAGACTGGCCTCAAACTAAGGGATACTCCTGCC +
Preference number: 1 (lower is better)
Translates to: FYILGFLFFLYSPGI*YVDQTGLKLRDTPA
Trigger: GGCAGGAGTATCCCTTAGTTTGAGGCCAGTCTGGTCTACATAGCAAATTCCAGGACTATACAGGAAAAAGAGAAAGCCCAAGATATAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 90 bp CATGGCAGTTTACAACTATTTGTAACTCCAGTTGACATGTTCATCTaGCCTCTGTGGAAACTGCATGCATGTGGTATACAGACATACATG +
Preference number: 1 (lower is better)
Translates to: HGSLQLFVTPVDMFI*PLWKLHACGIQTYM
Trigger: CATGTATGTCTGTATACCACATGCATGCAGTTTCCACAGAGGTCAGATGAACATGTCAACTGGAGTTACAAATAGTTGTAAACTGCCATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 90 bp CAGTGCAAGGGCTACAGGGAGAATAAGAGTTCGAGAGCTGGGGTTTaGCGTAAATTTTACAAAGTGTATAAAGAATCTGTTCTCTACAAT +
Preference number: 1 (lower is better)
Translates to: QCKGYRENKSSRAGV*RKFYKVYKESVLYN
Trigger: ATTGTAGAGAACAGATTCTTTATACACTTTGTAAAATTTACGCCAAACCCCAGCTCTCGAACTCTTATTCTCCCTGTAGCCCTTGCACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 90 bp TCTCTTCATTTAGAGATGAGGGTTTCTAGAATAGCTGGCTGTATTTaGATTGTAAGATTTCCTTCAGGGGTGGAGAAGAACACATCTCGT +
Preference number: 1 (lower is better)
Translates to: SLHLEMRVSRIAGCI*IVRFPSGVEKNTSR
Trigger: ACGAGATGTGTTCTTCTCCACCCCTGAAGGAAATCTTACAATCCAAATACAGCCAGCTATTCTAGAAACCCTCATCTCTAAATGAAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR TCA 90 bp AGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGGCCTGGTTGACAGAGTaGGTCCCAGGACTGCCAGGG +
Preference number: 2 (lower is better)
Translates to: RTCTHAGSKCRASRAVVAAWLTE*VPGLPG
Trigger: CCCTGGCAGTCCTGGGACTCACTCTGTCAACCAGGC...CGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
ENSMUST00000173987.2
3UTR-3UTR TCA 90 bp CAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGCCTGGTTGACAGAGTaGGTCCCAGGACTGCCAGGG +
Preference number: 2 (lower is better)
Translates to: QAGAGVRRPGNAGGRAGTAWLTE*VPGLPG
Trigger: CCCTGGCAGTCCTGGGACTCACTCTGTCAACCAGGC...AGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp CGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGCACGGACGTGCACGCACGCTaGGTCAAAGTGCAGGGCAAG +
Preference number: 2 (lower is better)
Translates to: RARTLGQSAGQAGQWWRTDVHAR*VKVQGK
Trigger: CTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTC...CGTGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
ENSMUST00000173987.2
3UTR-3UTR TCA 90 bp GCTCTTCCTGGGCCATTGGGCTGGCAGGCGGAGCTCACTTGGAGGGTGGGAGCACGAGGCCAGCCTGGTTaGCAGAGTGAGTCCCAGGAC +
Preference number: 2 (lower is better)
Translates to: ALPGPLGWQAELTWRVGARGQPG*QSESQD
Trigger: GTCCTGGGACTCACTCTGTCAACCAGGCTGGCCTCG...TGCTCCCACCCTCCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp AAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGCCTGGGCCATTGGGCTaGCAGGCGGAGCTCACTTGG +
Preference number: 2 (lower is better)
Translates to: KDRGRARTLGQSAGQAGQPGPLG*QAELTW
Trigger: CCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGG...CTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp TACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTCTTCCTGGGCCATTaGGCTGGCAGGCGGAGCTCA +
Preference number: 2 (lower is better)
Translates to: YRQEQECAGLGMLEAVLALFLGH*AGRRSS
Trigger: TGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAG...TGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp CAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGGCCAGCTGGTCAACTaGCCAGAGAGGAAAGGCGGT +
Preference number: 2 (lower is better)
Translates to: QAGAGVRRPGNAGGRAGTGQLVN*PERKGG
Trigger: ACCGCCTTTCCTCTCTGGCCAGTTGACCAGCTGGCC...AGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR TCA 90 bp CAGGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTGGGCTGCGAGGCCAGCCTGGTTaGCAGAGTGAGTCCCAGGAC +
Preference number: 2 (lower is better)
Translates to: QAGQERPLDSCSSWAIGLRGQPG*QSESQD
Trigger: GTCCTGGGACTCACTCTGTCAACCAGGCTGGCCTCG...CAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR CAA 90 bp GGTCTCTGTCCATCGGTGGTGGGTGGCACACTGATGTCCACCACGTaGTTGCCAGGGGACTCATCGTGGGCTGCACGGTCAGCGATTTGC +
Preference number: 2 (lower is better)
Translates to: GLCPSVVGGTLMSTT*LPGDSSWAARSAIC
Trigger: GCAAATCGCTGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCACCACCGATGGACAGAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR CAA 90 bp CTCTGTCCATCGGTGGTGGGTGGCACACTGATGTCCACCACGTTGTaGCCAGGGGACTCATCGTGGGCTGCACGGTCAGCGATTTGCTTC +
Preference number: 2 (lower is better)
Translates to: LCPSVVGGTLMSTTL*PGDSSWAARSAICF
Trigger: GAAGCAAATCGCTGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCACCACCGATGGACAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR-3UTR CCA 90 bp GGGAGAGGGGCAAGGGTGTCTTCTCCCAGCATAAATCTACAGGCAGGAGCAGGACTCTTCCTGGGCCATTaGGCTGGCAGGCGGAGCTCA +
Preference number: 2 (lower is better)
Translates to: GRGARVSSPSINLQAGAGLFLGH*AGRRSS
Trigger: TGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAG...TCCTGCTCCTGCCTGTAGATTTATGCTGGGAGAAGACACCCTTGCCCCTCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp AGCCCAGAATGTCCACCTGCTCAGCCTCTGATGCCTGGCTCTTCGGGTATCAGCAGCTCACTTGGAGGGTaGGAGCAGCCTGTCCTAGAG +
Preference number: 2 (lower is better)
Translates to: SPECPPAQPLMPGSSGISSSLGG*EQPVLE
Trigger: CTCTAGGACAGGCTGCTCCCACCCTCCAAGTGAGCT...GCTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACATTCTGGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp TCAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGACTCCTGCTCTTCCTaGGCCATTGGGCTGGCAGGC +
Preference number: 2 (lower is better)
Translates to: SERVWDEDTGPAGQLAREDSCSS*AIGLAG
Trigger: GCCTGCCAGCCCAATGGCCCAGGAAGAGCAGGAGTC...CTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR GCA 90 bp AGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGAAACACGCTGGGTCAAAGTaGAGGGCAAGCCGGGCAGTG +
Preference number: 2 (lower is better)
Translates to: REFGMRIQGQLVNWPERKHAGSK*RASRAV
Trigger: CACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTG...TTTCCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp TCAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGACAGGAGAGGCCACTaGACTCCTGCTCTTCCTGGG +
Preference number: 2 (lower is better)
Translates to: SERVWDEDTGPAGQLAREDRRGH*TPALPG
Trigger: CCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTC...CTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR GCA 90 bp CAGGTTCCTGACCAGACACGGAGACGAGACAGAGAAGTGGGGATGGGCAGAGGAAGTGAGTCCCAGGACTaGCAGGGCTACACAGAGAAA +
Preference number: 2 (lower is better)
Translates to: QVPDQTRRRDREVGMGRGSESQD*QGYTEK
Trigger: TTTCTCTGTGTAGCCCTGGCAGTCCTGGGACTCACT...TCCTCTGCCCATCCCCACTTCTCTGTCTCGTCTCCGTGTCTGGTCAGGAACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp TGCAGACAGGTTCCTGACCAGACACGGAGACGAGACAGAGAAGTGGGGATGGGCCATCTTCCTCACCTCTaGCTGGCCTTGTCCATCCTA +
Preference number: 2 (lower is better)
Translates to: CRQVPDQTRRRDREVGMGHLPHL*LALSIL
Trigger: TAGGATGGACAAGGCCAGCCAGAGGTGAGGAAGATG...GCCCATCCCCACTTCTCTGTCTCGTCTCCGTGTCTGGTCAGGAACCTGTCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR-3UTR TCA 90 bp CAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGGCTTTTAGCTTCTCTTaGGCAGGCAGGACAGGAGAG +
Preference number: 2 (lower is better)
Translates to: QREFGMRIQGQLVNWPERAFSFS*AGRTGE
Trigger: CTCTCCTGTCCTGCCTGCTCAAGAGAAGCTAAAAGC...CCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR GCA 90 bp CTGATGTCCACCACGTTGTTGCCAGGGGACTCATCGTGGGCTGCACGGTCAGCGGAGGATGTTCTTGAATaGTTCCTCTACATTGGTGGA +
Preference number: 2 (lower is better)
Translates to: LMSTTLLPGDSSWAARSAEDVLE*FLYIGG
Trigger: TCCACCAATGTAGAGGAAGCATTCAAGAACATCCTC...CGCTGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR-3UTR CCA 90 bp AGGCGGTTTCGATCTCTGAAGTCTGGAAAACAGGAGAAGCAGGTTCCTTCCACTGACGTGCACGCACGCTaGGTCAAAGTGCAGGGCAAG +
Preference number: 2 (lower is better)
Translates to: RRFRSLKSGKQEKQVPSTDVHAR*VKVQGK
Trigger: CTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTC...AGTGGAAGGAACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp TCAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGCATCTTCCTCACCTCTaGCTGGCCTTGTCCATCCTA +
Preference number: 2 (lower is better)
Translates to: SERVWDEDTGPAGQLAREHLPHL*LALSIL
Trigger: TAGGATGGACAAGGCCAGCCAGAGGTGAGGAAGATG...CTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp AAAGGGCCCTGGTTCAGGTGCATCATTTGGTGGAGAGAAAGAAGACAGAAGCTGGGCCAGCTGGTCAACTaGCCAGAGAGGAAAGGCGGT +
Preference number: 2 (lower is better)
Translates to: KGPWFRCIIWWRERRQKLGQLVN*PERKGG
Trigger: ACCGCCTTTCCTCTCTGGCCAGTTGACCAGCTGGCC...CAGCTTCTGTCTTCTTTCTCTCCACCAAATGATGCACCTGAACCAGGGCCCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp GAGAAGCAGGTTCCTTCCACTCATCTTCCTCACCTCTGGCTGGCCTaGTCCATCCTACCAACCTCCCTATCCTGTCAAGATGCCCACAAT +
Preference number: 2 (lower is better)
Translates to: EKQVPSTHLPHLWLA*SILPTSLSCQDAHN
Trigger: ATTGTGGGCATCTTGACAGGATAGGGAGGTTGGTAGGATGGACAAGGCCAGCCAGAGGTGAGGAAGATGAGTGGAAGGAACCTGCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR GCA 90 bp CATTTGTGTGTGCAAATAGTCTCTCCTAAGGGTCCAGGTGGGAGGACAACTTTAAGGCAGGAGCAGGAGTaGGCAGGCCTGGGAATGCTG +
Preference number: 2 (lower is better)
Translates to: HLCVQIVSPKGPGGRTTLRQEQE*AGLGML
Trigger: CAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCT...TAAAGTTGTCCTCCCACCTGGACCCTTAGGAGAGACTATTTGCACACACAAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CCA 90 bp AATGCTAGTATAGGTGAGTGCAGGCATGTGCATCCTGTAAGAGCCTACAACATCGACTCCTGCTCTTCCTaGGCCATTGGGCTGGCAGGC +
Preference number: 2 (lower is better)
Translates to: NASIGECRHVHPVRAYNIDSCSS*AIGLAG
Trigger: GCCTGCCAGCCCAATGGCCCAGGAAGAGCAGGAGTC...GATGTTGTAGGCTCTTACAGGATGCACATGCCTGCACTCACCTATACTAGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CCA 90 bp TTCCAGAAAATAAATTGTCCACTAAGCTCAGATAGACAGACAGACAGGCAGGCACCTGGGCCATTGGGCTaGCAGGCGGAGCTCACTTGG +
Preference number: 2 (lower is better)
Translates to: FQKINCPLSSDRQTDRQAPGPLG*QAELTW
Trigger: CCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGG...TGCCTGCCTGTCTGTCTGTCTATCTGAGCTTAGTGGACAATTTATTTTCTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp ACTTCAGGTCACCATCATTTCCTTCCTCCATACTACAGGAGCCACTaGCAGAGGACTCACTCTCCCCTCCTTGGAGCCCAAGATCCTTAT +
Preference number: 2 (lower is better)
Translates to: TSGHHHFLPPYYRSH*QRTHSPLLGAQDPY
Trigger: ATAAGGATCTTGGGCTCCAAGGAGGGGAGAGTGAGTCCTCTGCAAGTGGCTCCTGTAGTATGGAGGAAGGAAATGATGGTGACCTGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp GCACACATCTGTGATCCCAGCACTGATGATGCAGGGAGAAGGGGATaGCTTGGGCTTGCTGGGAGAAATCCTACCTCAAATAGAGGAAGA +
Preference number: 2 (lower is better)
Translates to: AHICDPSTDDAGRRG*LGLAGRNPTSNRGR
Trigger: TCTTCCTCTATTTGAGGTAGGATTTCTCCCAGCAAGCCCAAGCAATCCCCTTCTCCCTGCATCATCAGTGCTGGGATCACAGATGTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp ACATCTGTGATCCCAGCACTGATGATGCAGGGAGAAGGGGATTGCTaGGGCTTGCTGGGAGAAATCCTACCTCAAATAGAGGAAGACACT +
Preference number: 2 (lower is better)
Translates to: TSVIPALMMQGEGDC*GLLGEILPQIEEDT
Trigger: AGTGTCTTCCTCTATTTGAGGTAGGATTTCTCCCAGCAAGCCCAAGCAATCCCCTTCTCCCTGCATCATCAGTGCTGGGATCACAGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp CCAATGCAGAAGATGAGTGCTGCTTATCAGCTTGCTCTTCATGGCTaGCTTAGCCTTTCTTACAGAACCCAGAACCACCAACCCAGGGGA +
Preference number: 2 (lower is better)
Translates to: PMQKMSAAYQLALHG*LSLSYRTQNHQPRG
Trigger: TCCCCTGGGTTGGTGGTTCTGGGTTCTGTAAGAAAGGCTAAGCAAGCCATGAAGAGCAAGCTGATAAGCAGCACTCATCTTCTGCATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CCA 90 bp ATTCGGCAGGTAAGGGTGCCCACCACCAAGCCTCACAACTTCAGTTTGATCCCTAGGTGCATCATTTGGTaGAGAGAAAGAAGACAGAAG +
Preference number: 2 (lower is better)
Translates to: IRQVRVPTTKPHNFSLIPRCIIW*RERRQK
Trigger: CTTCTGTCTTCTTTCTCTCCACCAAATGATGCACCT...AGGGATCAAACTGAAGTTGTGAGGCTTGGTGGTGGGCACCCTTACCTGCCGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR GCA 90 bp AATGCTAGTATAGGTGAGTGCAGGCATGTGCATCCTGTAAGAGCCTACAACATCTCTCACAGCCTACTGTaGAAGATCAGCATGTCTGCC +
Preference number: 2 (lower is better)
Translates to: NASIGECRHVHPVRAYNISHSLL*KISMSA
Trigger: GGCAGACATGCTGATCTTGCACAGTAGGCTGTGAGA...GATGTTGTAGGCTCTTACAGGATGCACATGCCTGCACTCACCTATACTAGCATT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp CTTGTAGTCACTGTTGCCCTCTACTGTCCCCATCAAGTGTCATTCTaGAGTAAAGACAGCCATGGTAGAGCTGACATCACCCACTGTTAT +
Preference number: 2 (lower is better)
Translates to: LVVTVALYCPHQVSF*SKDSHGRADITHCY
Trigger: ATAACAGTGGGTGATGTCAGCTCTACCATGGCTGTCTTTACTCAAGAATGACACTTGATGGGGACAGTAGAGGGCAACAGTGACTACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp CCACATCGCCTGTCTAAGATCATTTTAGTTGCCGTGACAAAGGGTTaGGGAGCAGGATATTGGAAAGAGGAGGGTCAGTTGGATAATTCG +
Preference number: 2 (lower is better)
Translates to: PHRLSKIILVAVTKG*GAGYWKEEGQLDNS
Trigger: CGAATTATCCAACTGACCCTCCTCTTTCCAATATCCTGCTCCCAAACCCTTTGTCACGGCAACTAAAATGATCTTAGACAGGCGATGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CCA 90 bp ACCAAAGCATATAATGTGTTGCATGGACATTGCATATCTACTTACGTGTGTACATGCTGGAGGCCGTGCTaGCACTGGCTATGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: TKAYNVLHGHCISTYVCTCWRPC*HWLWWC
Trigger: ACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCA...TGTACACACGTAAGTAGATATGCAATGTCCATGCAACACATTATATGCTTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp AGGTGGGAGGACAACTTTATAGGGAGTCCTCATCTTTCACATGGTTaGAGACAGGGTCTTTCTTGTTTTACCTCTACAGAAGCTAGTCCA +
Preference number: 2 (lower is better)
Translates to: RWEDNFIGSPHLSHG*RQGLSCFTSTEASP
Trigger: TGGACTAGCTTCTGTAGAGGTAAAACAAGAAAGACCCTGTCTCAAACCATGTGAAAGATGAGGACTCCCTATAAAGTTGTCCTCCCACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CCA 90 bp GTTGTATATACAAAACACGAAGATATTGCTTCACTTGCAGACAGGTTCCTGACCAGCTCAGAGAGAGTTTaGGATGAGGATACAGGGCCA +
Preference number: 2 (lower is better)
Translates to: VVYTKHEDIASLADRFLTSSERV*DEDTGP
Trigger: TGGCCCTGTATCCTCATCCCAAACTCTCTCTGAGCT...GGTCAGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTTTTGTATATACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR-3UTR GCA 90 bp AGGTTTCTGTACAGAAGTGGCTTATACATTTTAGTAACGGGCAACAGTGCAAGGAGATATTGCTTCACTTaGAGACAGGTTCCTGACCAG +
Preference number: 2 (lower is better)
Translates to: RFLYRSGLYILVTGNSARRYCFT*RQVPDQ
Trigger: CTGGTCAGGAACCTGTCTGCAAGTGAAGCAATATCT...CCTTGCACTGTTGCCCGTTACTAAAATGTATAAGCCACTTCTGTACAGAAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CCA 90 bp AAGCTAGGCAGGAAGCTTCCAGATCAGTTCTCCTTGATTTTTCCATTTCTTACACAACTTTGTGAGTTCTaGGAGCTGTACTCATGCAGC +
Preference number: 2 (lower is better)
Translates to: KLGRKLPDQFSLIFPFLTQLCEF*ELYSCS
Trigger: GCTGCATGAGTACAGCTCCCAGAACTCACAAAGTTG...TGTAAGAAATGGAAAAATCAAGGAGAACTGATCTGGAAGCTTCCTGCCTAGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp GTAAAAATATTTAGTGTCATGTGGAAATCAGAAGACAACTTGGAGTaGGTTCTTCCAGTACGTCAACTCCATTGGCAGTTCCTGCGAGCT +
Preference number: 2 (lower is better)
Translates to: VKIFSVMWKSEDNLE*VLPVRQLHWQFLRA
Trigger: AGCTCGCAGGAACTGCCAATGGAGTTGACGTACTGGAAGAACCAACTCCAAGTTGTCTTCTGATTTCCACATGACACTAAATATTTTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CCA 90 bp GTTGTATATACAAAACACGAAGATATTGCTTCACTTGCAGACAGGTTCCTGACCTCGATCTCTGAAGTCTaGAAAACAGGAGAAGCAGGT +
Preference number: 2 (lower is better)
Translates to: VVYTKHEDIASLADRFLTSISEV*KTGEAG
Trigger: ACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCGA...GGTCAGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTTTTGTATATACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR-3UTR CCA 90 bp GATTGCTTGGGCTTGCTGGGAGAAATCCTACCTCAAATAGAGGAAGACACTTTCATAGCTGGCTGTATTTaGATTGTAAGATTTCCTTCA +
Preference number: 2 (lower is better)
Translates to: DCLGLLGEILPQIEEDTFIAGCI*IVRFPS
Trigger: TGAAGGAAATCTTACAATCCAAATACAGCCAGCTAT...GAAAGTGTCTTCCTCTATTTGAGGTAGGATTTCTCCCAGCAAGCCCAAGCAATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp TGTTTTGTAAAAATATTTAGTGTCATGTGGAAATCAGAAGACAACTaGGAGTTGGTTCTTCCAGTACGTCAACTCCATTGGCAGTTCCTG +
Preference number: 2 (lower is better)
Translates to: CFVKIFSVMWKSEDN*ELVLPVRQLHWQFL
Trigger: CAGGAACTGCCAATGGAGTTGACGTACTGGAAGAACCAACTCCAAGTTGTCTTCTGATTTCCACATGACACTAAATATTTTTACAAAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CCA 90 bp ACCAAAGCATATAATGTGTTGCATGGACATTGCATATCTACTTACGTGTGTACATGTGCACATTGCATGTaGCTATGTGCACATTTGTGT +
Preference number: 2 (lower is better)
Translates to: TKAYNVLHGHCISTYVCTCAHCM*LCAHLC
Trigger: ACACAAATGTGCACATAGCCACATGCAATGTGCACA...TGTACACACGTAAGTAGATATGCAATGTCCATGCAACACATTATATGCTTTGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 90 bp TTTTGTCTTTCATGTGTTGGTCTTTGTAGTGTTTTCTCCAGTCCCTaGCTACACTATGACAGTTACAAACCCAACGATTCTATAATAAAA +
Preference number: 2 (lower is better)
Translates to: FCLSCVGLCSVFSSP*LHYDSYKPNDSIIK
Trigger: TTTTATTATAGAATCGTTGGGTTTGTAACTGTCATAGTGTAGCAAGGGACTGGAGAAAACACTACAAAGACCAACACATGAAAGACAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CAA 90 bp TACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCAGCTCTTCCTGGGCCATaGGGCTGGCAGGCGGAGCTC +
Preference number: 3 (lower is better)
Translates to: YRQEQECAGLGMLEAVLAALPGP*GWQAEL
Trigger: GAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAGC...TGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp GACAAGGGAGGGGCCGGGAGGACACTGGTGAAGGGCTaGCCAAGGATCGAGGACGTGCACGCACGCTGGGTC +
Preference number: 3 (lower is better)
Translates to: DKGGAGRTLVKG*PRIEDVHARWV
Trigger: GACCCAGCGTGCGTGCACGTCCTCGATCCTTGGCCAGCCCTTCACCAGTGTCCTCCCGGCCCCTCCCTTGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp GGCCATTGGGCTGGCAGGCGGAGCTCACTTGGAGGGTaGGAGCAGCCTGTCCTAGAGGGACAAGGGAGGGGC +
Preference number: 3 (lower is better)
Translates to: GHWAGRRSSLGG*EQPVLEGQGRG
Trigger: GCCCCTCCCTTGTCCCTCTAGGACAGGCTGCTCCCACCCTCCAAGTGAGCTCCGCCTGCCAGCCCAATGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp GGCCACTGGACTCCTGCTCTTCCTGGGCCATTGGGCTaGCAGGCGGAGCTCACTTGGAGGGTGGGAGCAGCC +
Preference number: 3 (lower is better)
Translates to: GHWTPALPGPLG*QAELTWRVGAA
Trigger: GGCTGCTCCCACCCTCCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CAA 90 bp AGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGGCTATGGTGGTGTGCTCTTCCTGGGCCATaGGGCTGGCAGGCGGAGCTC +
Preference number: 3 (lower is better)
Translates to: SAQAWECWRPCWHWLWWCALPGP*GWQAEL
Trigger: GAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAGC...ACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp AAGGGCTGGCCAAGGATCGAGGACGTGCACGCACGCTaGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGC +
Preference number: 3 (lower is better)
Translates to: KGWPRIEDVHAR*VKVQGKPGSGG
Trigger: GCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTTGGCCAGCCCTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp GGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTaGGCTGGCAGGCGGAGCTCACTTGGAGGGTGGGAG +
Preference number: 3 (lower is better)
Translates to: GEATGLLLFLGH*AGRRSSLGGWE
Trigger: CTCCCACCCTCCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CAA 90 bp CGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGCACGTGGCAGCACTGCAGCTaGTTGGGTCTCTGTCCATCG +
Preference number: 3 (lower is better)
Translates to: RARTLGQSAGQAGQWWRTWQHCS*LGLCPS
Trigger: CGATGGACAGAGACCCAACAAGCTGCAGTGCTGCCA...CGTGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR GCA 72 bp CAAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTaGAGGGCAAGCCGGGCAGTGGTGGCGCACGCCTTT +
Preference number: 3 (lower is better)
Translates to: QGSRTCTHAGSK*RASRAVVAHAF
Trigger: AAAGGCGTGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
ENSMUST00000173987.2
3UTR GCA 72 bp AGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTaGTGGCACTGGCTATGGTGGTGTAGGCAGGAGGCA +
Preference number: 3 (lower is better)
Translates to: SRSAQAWECWRP*WHWLWWCRQEA
Trigger: TGCCTCCTGCCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp GCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTaGGCCATTGGGCTGGCAGGCGGAGCTCACTTGGAG +
Preference number: 3 (lower is better)
Translates to: AGQERPLDSCSS*AIGLAGGAHLE
Trigger: CTCCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp AGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTaGCACTGGCTATGGTGGTGTAGGCAGGAGGCAGAG +
Preference number: 3 (lower is better)
Translates to: RSAQAWECWRPC*HWLWWCRQEAE
Trigger: CTCTGCCTCCTGCCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp ACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTaGAGGCCGTGCTGGCACTGGCTATGGTGGTGTAGG +
Preference number: 3 (lower is better)
Translates to: TGRSRSAQAWEC*RPCWHWLWWCR
Trigger: CCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR-3UTR CAA 90 bp GACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGCAATGTCCACCACGTTGTaGCCAGGGGACTCATCGTGG +
Preference number: 3 (lower is better)
Translates to: DVHARWVKVQGKPGSGGAMSTTL*PGDSSW
Trigger: CCACGATGAGTCCCCTGGCAACAACGTGGTGGACAT...TGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR CCA 72 bp CATAAATCTACAGGCAGGAGCAGGAGTGCGCAGGCCTaGGAATGCTGGAGGCCGTGCTGGCACTGGCTATGG +
Preference number: 3 (lower is better)
Translates to: HKSTGRSRSAQA*ECWRPCWHWLW
Trigger: CCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTAGATTTATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp AGGTTCCTGACCAGACACGGAGACGAGACAGAGAAGTaGGGATGGGCAGAGGAGAGCGCTGCGTGCAGAGGA +
Preference number: 3 (lower is better)
Translates to: RFLTRHGDETEK*GWAEESAACRG
Trigger: TCCTCTGCACGCAGCGCTCTCCTCTGCCCATCCCCACTTCTCTGTCTCGTCTCCGTGTCTGGTCAGGAACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR-3UTR CAA 90 bp GTATCAGCTCAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGGCAGGCGGAGCTCACTaGGAGGGTGGGAGCAGCCTG +
Preference number: 3 (lower is better)
Translates to: VSAQREFGMRIQGQLVNWAGGAH*EGGSSL
Trigger: CAGGCTGCTCCCACCCTCCAAGTGAGCTCCGCCTGC...CCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGAGCTGATAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR TCA 72 bp GGAGGCAGAGCCCAGAATGTCCACCTGCTCAGCCTCTaGTGCCTGGCTCTTCGGGTATCAGCTCAGAGAGAG +
Preference number: 3 (lower is better)
Translates to: GGRAQNVHLLSL*CLALRVSAQRE
Trigger: CTCTCTCTGAGCTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACATTCTGGGCTCTGCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR GCA 72 bp TGGTGTAGGCAGGAGGCAGAGCCCAGAATGTCCACCTaGTCAGCCTCTGATGCCTGGCTCTTCGGGTATCAG +
Preference number: 3 (lower is better)
Translates to: WCRQEAEPRMST*SASDAWLFGYQ
Trigger: CTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACATTCTGGGCTCTGCCTCCTGCCTACACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp CTGCAGCTTGTTGGGTCTCTGTCCATCGGTGGTGGGTaGCACACTGATGTCCACCACGTTGTTGCCAGGGGA +
Preference number: 3 (lower is better)
Translates to: LQLVGSLSIGGG*HTDVHHVVARG
Trigger: TCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCACCACCGATGGACAGAGACCCAACAAGCTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR TCA 72 bp TGTTGGGTCTCTGTCCATCGGTGGTGGGTGGCACACTaGTGTCCACCACGTTGTTGCCAGGGGACTCATCGT +
Preference number: 3 (lower is better)
Translates to: CWVSVHRWWVAH*CPPRCCQGTHR
Trigger: ACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCACCACCGATGGACAGAGACCCAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR CCA 72 bp GAGCCCAGAATGTCCACCTGCTCAGCCTCTGATGCCTaGCTCTTCGGGTATCAGCTCAGAGAGAGTTTGGGA +
Preference number: 3 (lower is better)
Translates to: EPRMSTCSASDA*LFGYQLRESLG
Trigger: TCCCAAACTCTCTCTGAGCTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACATTCTGGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp CTGATGTCCACCACGTTGTTGCCAGGGGACTCATCGTaGGCTGCACGGTCAGCGATTTGCTTCTGTGACACA +
Preference number: 3 (lower is better)
Translates to: LMSTTLLPGDSS*AARSAICFCDT
Trigger: TGTGTCACAGAAGCAAATCGCTGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR-3UTR CAA 90 bp GTGGGTGGCACACTGATGTCCACCACGTTGTTGCCAGGGGACTCATCGTGGGCTAATGCTTCCTCTACATaGGTGGAATCCAAGGCTGAG +
Preference number: 3 (lower is better)
Translates to: VGGTLMSTTLLPGDSSWANASST*VESKAE
Trigger: CTCAGCCTTGGATTCCACCAATGTAGAGGAAGCATT...AGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR-3UTR CAA 90 bp CAGAGTGAGTCCCAGGACTGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAGCACTGCAGCTTGTaGGGTCTCTGTCCATCGGTG +
Preference number: 3 (lower is better)
Translates to: QSESQDCQGYTEKPCLEKQHCSL*GLCPSV
Trigger: CACCGATGGACAGAGACCCAACAAGCTGCAGTGCTG...TTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCAGTCCTGGGACTCACTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR TCA 72 bp TGGCTCTTCGGGTATCAGCTCAGAGAGAGTTTGGGATaGGGATACAGGGCCAGCTGGTCAACTGGCCAGAGA +
Preference number: 3 (lower is better)
Translates to: WLFGYQLRESLG*GYRASWSTGQR
Trigger: TCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGAGCTGATACCCGAAGAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR GCA 72 bp ATTGTTGGCAGCAGATGGAAGTGGCAAGCATGCTCATaGTTCCCATTCACACCAGGGGGCATCCTAGGCCTG +
Preference number: 3 (lower is better)
Translates to: IVGSRWKWQACS*FPFTPGGILGL
Trigger: CAGGCCTAGGATGCCCCCTGGTGTGAATGGGAAGCATGAGCATGCTTGCCACTTCCATCTGCTGCCAACAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 72 bp AGGGATACTCCTGCCTCCCAAGTTCACGGGCTTTCTTaGGCAGGTTCCGTTTGTTGCATGTGGGGAAGGGTT +
Preference number: 3 (lower is better)
Translates to: RDTPASQVHGLS*AGSVCCMWGRV
Trigger: AACCCTTCCCCACATGCAACAAACGGAACCTGCTCAAGAAAGCCCGTGAACTTGGGAGGCAGGAGTATCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp ACCATCATTTCCTTCCTCCATACTACAGGAGCCACTTaGAGAGGACTCACTCTCCCCTCCTTGGAGCCCAAG +
Preference number: 3 (lower is better)
Translates to: TIISFLHTTGAT*RGLTLPSLEPK
Trigger: CTTGGGCTCCAAGGAGGGGAGAGTGAGTCCTCTGCAAGTGGCTCCTGTAGTATGGAGGAAGGAAATGATGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp AATGGGTTCTGGGAAGCGCCAGTGAAGATCAAGAGCTaGTCACCTTGTAGTCACTGTTGCCCTCTACTGTCC +
Preference number: 3 (lower is better)
Translates to: NGFWEAPVKIKS*SPCSHCCPLLS
Trigger: GGACAGTAGAGGGCAACAGTGACTACAAGGTGAGCAGCTCTTGATCTTCACTGGCGCTTCCCAGAACCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp TGTAGACCAGACTGGCCTCAAACTAAGGGATACTCCTaGCTCCCAAGTTCACGGGCTTTCTTGAGCAGGTTC +
Preference number: 3 (lower is better)
Translates to: CRPDWPQTKGYS*LPSSRAFLSRF
Trigger: GAACCTGCTCAAGAAAGCCCGTGAACTTGGGAGGCAGGAGTATCCCTTAGTTTGAGGCCAGTCTGGTCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp CCAGATAAGGAGTCCATTGTTGGCAGCAGATGGAAGTaGCAAGCATGCTCATGCTTCCCATTCACACCAGGG +
Preference number: 3 (lower is better)
Translates to: PDKESIVGSRWK*QACSCFPFTPG
Trigger: CCCTGGTGTGAATGGGAAGCATGAGCATGCTTGCCACTTCCATCTGCTGCCAACAATGGACTCCTTATCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp GAAGGTCAAGACAGGACCTCAAACAGGGTAAGGTCCTaGAGGCTGAAGCCAATGCAGAAGATGAGTGCTGCT +
Preference number: 3 (lower is better)
Translates to: EGQDRTSNRVRS*RLKPMQKMSAA
Trigger: AGCAGCACTCATCTTCTGCATTGGCTTCAGCCTCCAGGACCTTACCCTGTTTGAGGTCCTGTCTTGACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CAA 90 bp GTTGGGTCTCTGTCCATCGGTGGTGGGTGGCACACTGATGTCCACCACGTTGTTTCTGTGAGGATGTTCTaGAATGCTTCCTCTACATTG +
Preference number: 3 (lower is better)
Translates to: VGSLSIGGGWHTDVHHVVSVRMF*NASSTL
Trigger: CAATGTAGAGGAAGCATTCAAGAACATCCTCACAGA...AACAACGTGGTGGACATCAGTGTGCCACCCACCACCGATGGACAGAGACCCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR TCA 72 bp GTCAACTGGCCAGAGAGGAAAGGCGGTTTCGATCTCTaGAGTCTGGAAAACAGGAGAAGCAGGTTCCTTCCA +
Preference number: 3 (lower is better)
Translates to: VNWPERKGGFDL*SLENRRSRFLP
Trigger: TGGAAGGAACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTCTCTGGCCAGTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR TCA 72 bp TGTGCCCAGCTTGGATCTGAGAGATGTATCTGGGATTaGCCACTTCCCTCTTCCAACACACACAAGGAGGCT +
Preference number: 3 (lower is better)
Translates to: CAQLGSERCIWD*PLPSSNTHKEA
Trigger: AGCCTCCTTGTGTGTGTTGGAAGAGGGAAGTGGTCAATCCCAGATACATCTCTCAGATCCAAGCTGGGCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp TGGTTCTTCCAGTACGTCAACTCCATTGGCAGTTCCTaGGAGCTGAGTCTTAGACCTATGCTACCTCCTGCT +
Preference number: 3 (lower is better)
Translates to: WFFQYVNSIGSS*ELSLRPMLPPA
Trigger: AGCAGGAGGTAGCATAGGTCTAAGACTCAGCTCGCAGGAACTGCCAATGGAGTTGACGTACTGGAAGAACCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp GTGATCCCAGCACTGATGATGCAGGGAGAAGGGGATTaGTTGGGCTTGCTGGGAGAAATCCTACCTCAAATA +
Preference number: 3 (lower is better)
Translates to: VIPALMMQGEGD*LGLLGEILPQI
Trigger: TATTTGAGGTAGGATTTCTCCCAGCAAGCCCAAGCAATCCCCTTCTCCCTGCATCATCAGTGCTGGGATCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp GGCCAGAGAGGAAAGGCGGTTTCGATCTCTGAAGTCTaGAAAACAGGAGAAGCAGGTTCCTTCCACTCATCT +
Preference number: 3 (lower is better)
Translates to: GQRGKAVSISEV*KTGEAGSFHSS
Trigger: AGATGAGTGGAAGGAACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTCTCTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CCA 72 bp GGACACGTAAAAGGGCCCTGGTTCAGGTGCATCATTTaGTGGAGAGAAAGAAGACAGAAGCTGAGTGGTAGG +
Preference number: 3 (lower is better)
Translates to: GHVKGPWFRCII*WRERRQKLSGR
Trigger: CCTACCACTCAGCTTCTGTCTTCTTTCTCTCCACCAAATGATGCACCTGAACCAGGGCCCTTTTACGTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 72 bp AACACGAAGATATTGCTTCACTTGCAGACAGGTTCCTaGCCAGACACGGAGACGAGACAGAGAAGTGGGGAT +
Preference number: 3 (lower is better)
Translates to: NTKILLHLQTGS*PDTETRQRSGD
Trigger: ATCCCCACTTCTCTGTCTCGTCTCCGTGTCTGGTCAGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR TCA 72 bp TCCAGTACGTCAACTCCATTGGCAGTTCCTGCGAGCTaGGTCTTAGACCTATGCTACCTCCTGCTTATGTCT +
Preference number: 3 (lower is better)
Translates to: SSTSTPLAVPAS*VLDLCYLLLMS
Trigger: AGACATAAGCAGGAGGTAGCATAGGTCTAAGACTCAGCTCGCAGGAACTGCCAATGGAGTTGACGTACTGGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp TACAGGCAGAGCTGTCAAAGACAGTTCTCCTCTAGCTaGTACACAGCTTCTGGCACTATGAAAGCTAGGCAG +
Preference number: 3 (lower is better)
Translates to: YRQSCQRQFSSS*YTASGTMKARQ
Trigger: CTGCCTAGCTTTCATAGTGCCAGAAGCTGTGTAGCAGCTAGAGGAGAACTGTCTTTGACAGCTCTGCCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp ACTTACTATCTGCTTTGGGTACAGGAACAAGGGCAATaGGTTCTGGGAAGCGCCAGTGAAGATCAAGAGCTG +
Preference number: 3 (lower is better)
Translates to: TYYLLWVQEQGQ*VLGSASEDQEL
Trigger: CAGCTCTTGATCTTCACTGGCGCTTCCCAGAACCCATTGCCCTTGTTCCTGTACCCAAAGCAGATAGTAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp AAGGAATTGCAAGGTGAGACGCTAAGTGTGCCGAGCTaGGTCTCTCTTCCTCATCTTATGAAGCTGCAATGC +
Preference number: 3 (lower is better)
Translates to: KELQGETLSVPS*VSLPHLMKLQC
Trigger: GCATTGCAGCTTCATAAGATGAGGAAGAGAGACCCAGCTCGGCACACTTAGCGTCTCACCTTGCAATTCCTT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 72 bp CTCATCGTGGGCTGCACGGTCAGCGATTTGCTTCTGTaGCACAATACGGTAGATTTCTGTGAGGATGTTCTT +
Preference number: 3 (lower is better)
Translates to: LIVGCTVSDLLL*HNTVDFCEDVL
Trigger: AAGAACATCCTCACAGAAATCTACCGTATTGTGTCACAGAAGCAAATCGCTGACCGTGCAGCCCACGATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
3UTR GCA 72 bp GTGAAGATCAAGAGCTGCTCACCTTGTAGTCACTGTTaGCCTCTACTGTCCCCATCAAGTGTCATTCTTGAG +
Preference number: 3 (lower is better)
Translates to: VKIKSCSPCSHC*PLLSPSSVILE
Trigger: CTCAAGAATGACACTTGATGGGGACAGTAGAGGGCAACAGTGACTACAAGGTGAGCAGCTCTTGATCTTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp TTAGTTGCCGTGACAAAGGGTTTGGGAGCAGGATATTaGAAAGAGGAGGGTCAGTTGGATAATTCGGCAGGT +
Preference number: 3 (lower is better)
Translates to: LVAVTKGLGAGY*KEEGQLDNSAG
Trigger: ACCTGCCGAATTATCCAACTGACCCTCCTCTTTCCAATATCCTGCTCCCAAACCCTTTGTCACGGCAACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 72 bp AAAGGCTGGTACAACTTCTCCTTAAACTGTTCCAAGTaGAGGCTGCCACTTCAGGTCACCATCATTTCCTTC +
Preference number: 3 (lower is better)
Translates to: KGWYNFSLNCSK*RLPLQVTIISF
Trigger: GAAGGAAATGATGGTGACCTGAAGTGGCAGCCTTCACTTGGAACAGTTTAAGGAGAAGTTGTACCAGCCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp CAGAAGTGGCTTATACATTTTAGTAACGGGCAACAGTaGAAGGGCTACAGGGAGAATAAGAGTTCGAGAGCT +
Preference number: 3 (lower is better)
Translates to: QKWLIHFSNGQQ*KGYRENKSSRA
Trigger: AGCTCTCGAACTCTTATTCTCCCTGTAGCCCTTGCACTGTTGCCCGTTACTAAAATGTATAAGCCACTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp AGTTGTATATACAAAACACGAAGATATTGCTTCACTTaGAGACAGGTTCCTGACCAGACACGGAGACGAGAC +
Preference number: 3 (lower is better)
Translates to: SCIYKTRRYCFT*RQVPDQTRRRD
Trigger: GTCTCGTCTCCGTGTCTGGTCAGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTTTTGTATATACAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR GCA 72 bp CTCCAGTTGACATGTTCATCTGACCTCTGTGGAAACTaGATGCATGTGGTATACAGACATACATGCAGTCAA +
Preference number: 3 (lower is better)
Translates to: LQLTCSSDLCGN*MHVVYRHTCSQ
Trigger: TTGACTGCATGTATGTCTGTATACCACATGCATGCAGTTTCCACAGAGGTCAGATGAACATGTCAACTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp TTAGTGTCATGTGGAAATCAGAAGACAACTTGGAGTTaGTTCTTCCAGTACGTCAACTCCATTGGCAGTTCC +
Preference number: 3 (lower is better)
Translates to: LVSCGNQKTTWS*FFQYVNSIGSS
Trigger: GGAACTGCCAATGGAGTTGACGTACTGGAAGAACCAACTCCAAGTTGTCTTCTGATTTCCACATGACACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 72 bp CTCACATGGCAGTTTACAACTATTTGTAACTCCAGTTaGCATGTTCATCTGACCTCTGTGGAAACTGCATGC +
Preference number: 3 (lower is better)
Translates to: LTWQFTTICNSS*HVHLTSVETAC
Trigger: GCATGCAGTTTCCACAGAGGTCAGATGAACATGTCAACTGGAGTTACAAATAGTTGTAAACTGCCATGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp AAAGATGGAAATGGCTTTGTGATTAATAGCACAGGTTaGTCTACTAGAGGACTCAGGTTCAATTCCCAGCAC +
Preference number: 3 (lower is better)
Translates to: KDGNGFVINSTG*STRGLRFNSQH
Trigger: GTGCTGGGAATTGAACCTGAGTCCTCTAGTAGAGCAACCTGTGCTATTAATCACAAAGCCATTTCCATCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp GGAGGACAACTTTATAGGGAGTCCTCATCTTTCACATaGTTTGAGACAGGGTCTTTCTTGTTTTACCTCTAC +
Preference number: 3 (lower is better)
Translates to: GGQLYRESSSFT*FETGSFLFYLY
Trigger: GTAGAGGTAAAACAAGAAAGACCCTGTCTCAAACCATGTGAAAGATGAGGACTCCCTATAAAGTTGTCCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp GCTCACGGTACCAAATGTGAACTCACTTCTGTGGAATaGGCTTTAGATTTAATCAGAAAGGAACTGCTACTC +
Preference number: 3 (lower is better)
Translates to: AHGTKCELTSVE*ALDLIRKELLL
Trigger: GAGTAGCAGTTCCTTTCTGATTAAATCTAAAGCCCATTCCACAGAAGTGAGTTCACATTTGGTACCGTGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 72 bp TTGACATTACAGGTGTTTACATTGAGTCCAACTTTGTaGGTTCTGGGAGCTGTACTCATGCAGCACTTTTAC +
Preference number: 3 (lower is better)
Translates to: LTLQVFTLSPTL*VLGAVLMQHFY
Trigger: GTAAAAGTGCTGCATGAGTACAGCTCCCAGAACTCACAAAGTTGGACTCAATGTAAACACCTGTAATGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp CATGTGTTGGTCTTTGTAGTGTTTTCTCCAGTCCCTTaGTACACTATGACAGTTACAAACCCAACGATTCTA +
Preference number: 3 (lower is better)
Translates to: HVLVFVVFSPVP*YTMTVTNPTIL
Trigger: TAGAATCGTTGGGTTTGTAACTGTCATAGTGTAGCAAGGGACTGGAGAAAACACTACAAAGACCAACACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CCA 72 bp TTAGAGATGAGGGTTTCTAGAATAGCTGGCTGTATTTaGATTGTAAGATTTCCTTCAGGGGTGGAGAAGAAC +
Preference number: 3 (lower is better)
Translates to: LEMRVSRIAGCI*IVRFPSGVEKN
Trigger: GTTCTTCTCCACCCCTGAAGGAAATCTTACAATCCAAATACAGCCAGCTATTCTAGAAACCCTCATCTCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR-3UTR CAA 90 bp TTCCAGAAAATAAATTGTCCACTAAGCTCAGATAGACAGACAGACAGGCAGGCAAATAGCTGGCTGTATTaGGATTGTAAGATTTCCTTC +
Preference number: 3 (lower is better)
Translates to: FQKINCPLSSDRQTDRQANSWLY*DCKISF
Trigger: GAAGGAAATCTTACAATCCAAATACAGCCAGCTATT...TGCCTGCCTGTCTGTCTGTCTATCTGAGCTTAGTGGACAATTTATTTTCTGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 72 bp AGTCTAGTCCCTACCTGGACACAGCAGCTAAAAGCTTaGCCAAACAATAAAATGAGTTGCTTATGCACTAAT +
Preference number: 3 (lower is better)
Translates to: SLVPTWTQQLKA*PNNKMSCLCTN
Trigger: ATTAGTGCATAAGCAACTCATTTTATTGTTTGGTCAAGCTTTTAGCTGCTGTGTCCAGGTAGGGACTAGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 72 bp TTACAACTATTTGTAACTCCAGTTGACATGTTCATCTaGCCTCTGTGGAAACTGCATGCATGTGGTATACAG +
Preference number: 3 (lower is better)
Translates to: LQLFVTPVDMFI*PLWKLHACGIQ
Trigger: CTGTATACCACATGCATGCAGTTTCCACAGAGGTCAGATGAACATGTCAACTGGAGTTACAAATAGTTGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR TCA 72 bp AAATATGTACTCAGACATGCTAAGCCACAAGGTTCATaGTTCATTAGAGGTGCATTAGCATTGTACCTGCTT +
Preference number: 3 (lower is better)
Translates to: KYVLRHAKPQGS*FIRGALALYLL
Trigger: AAGCAGGTACAATGCTAATGCACCTCTAATGAATCATGAACCTTGTGGCTTAGCATGTCTGAGTACATATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR GCA 72 bp TTTTTCCATTTCTTACAACCAAAGCATATAATGTGTTaGATGGACATTGCATATCTACTTACGTGTGTACAC +
Preference number: 3 (lower is better)
Translates to: FFHFLQPKHIMC*MDIAYLLTCVH
Trigger: GTGTACACACGTAAGTAGATATGCAATGTCCATGCAACACATTATATGCTTTGGTTGTAAGAAATGGAAAAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR CCA 90 bp GGCAGGCGGAGCTCACTTGGAGGGTGGGAGCAGCCTGTCCTAGAGGGACAAGGGCACGGGCCTCATCAGTaGGCACAGCCCGAAGGTGGC +
Preference number: 4 (lower is better)
Translates to: GRRSSLGGWEQPVLEGQGHGPHQ*AQPEGG
Trigger: GCCACCTTCGGGCTGTGCCCACTGATGAGGCCCGTG...CCCTTGTCCCTCTAGGACAGGCTGCTCCCACCCTCCAAGTGAGCTCCGCCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp AGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGTGCCGTCCACCTGAATaGTGCGAGTGGCGAACTCCA +
Preference number: 4 (lower is better)
Translates to: RTCTHAGSKCRASRAVVACRPPE*CEWRTP
Trigger: TGGAGTTCGCCACTCGCAGCATTCAGGTGGACGGCA...CGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
ENSMUST00000173987.2
CDS-3UTR CCA 90 bp CGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGGCTATGGTGGTGTAGGCGGCACAGCCCGAAGGTaGCGCAGGTCACTCTTGTTG +
Preference number: 4 (lower is better)
Translates to: RRPGNAGGRAGTGYGGVGGTARR*RRSLLL
Trigger: CAACAAGAGTGACCTGCGCCACCTTCGGGCTGTGCC...GCCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp TACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCAGGCACAGCCCGAAGGTaGCGCAGGTCACTCTTGTTG +
Preference number: 4 (lower is better)
Translates to: YRQEQECAGLGMLEAVLAGTARR*RRSLLL
Trigger: CAACAAGAGTGACCTGCGCCACCTTCGGGCTGTGCC...TGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CAA 72 bp TCGGTGGTGGGTGGCACACTGATGTCCACCACGTTGTaGCCAGGGGACTCATCGTGGGCTGCACGGTCAGCG +
Preference number: 4 (lower is better)
Translates to: SVVGGTLMSTTL*PGDSSWAARSA
Trigger: CGCTGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCACCACCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR TCA 90 bp AAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGGTCTTGCCGTCCACCTaGATGCTGCGAGTGGCGAAC +
Preference number: 4 (lower is better)
Translates to: KDRGRARTLGQSAGQAGQVLPST*MLRVAN
Trigger: GTTCGCCACTCGCAGCATTCAGGTGGACGGCAAGAC...CTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
ENSMUST00000173987.2
CDS-3UTR TCA 90 bp GGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTGGGCTGGCGCAGTGTCCCAGATCTaGGCCTTGATGGTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: GRTGEATGLLLFLGHWAGAVSQI*ALMVLP
Trigger: CGGCAAGACCATCAAGGCTCAGATCTGGGACACTGC...GCCAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp TACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACGTCCACCTGAATGCTaGGAGTGGCGAACTCCACTC +
Preference number: 4 (lower is better)
Translates to: YRQEQECAGLGMLEAVLARPPEC*EWRTPL
Trigger: GAGTGGAGTTCGCCACTCGCAGCATTCAGGTGGACG...TGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp GGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTGGGCTGGCTGCCGTCCACCTGAATaGTGCGAGTGGCGAACTCCA +
Preference number: 4 (lower is better)
Translates to: GRTGEATGLLLFLGHWAGCRPPE*CEWRTP
Trigger: TGGAGTTCGCCACTCGCAGCATTCAGGTGGACGGCA...GCCAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp TACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACAGCAGTGCACCCACTaGACCACGGTAGTACGCAGA +
Preference number: 4 (lower is better)
Translates to: YRQEQECAGLGMLEAVLAQQCTH*TTVVRR
Trigger: TCTGCGTACTACCGTGGTGCAGTGGGTGCACTGCTG...TGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp GGCAGGCGGAGCTCACTTGGAGGGTGGGAGCAGCCTGTCCTAGAGGGACAAGGGCAGCAGTGCACCCACTaGACCACGGTAGTACGCAGA +
Preference number: 4 (lower is better)
Translates to: GRRSSLGGWEQPVLEGQGQQCTH*TTVVRR
Trigger: TCTGCGTACTACCGTGGTGCAGTGGGTGCACTGCTG...CCCTTGTCCCTCTAGGACAGGCTGCTCCCACCCTCCAAGTGAGCTCCGCCTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp GGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGGCTATTCCATCGGTGGTGGGTaGCACACTGATGTCCACCAC +
Preference number: 4 (lower is better)
Translates to: GAGVRRPGNAGGRAGTGYSIGGG*HTDVHH
Trigger: GTGGTGGACATCAGTGTGCCACCCACCACCGATGGA...ATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR TCA 90 bp CAGGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTGGGCTGGCAGTGTCCCAGATCTaGGCCTTGATGGTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: QAGQERPLDSCSSWAIGLAVSQI*ALMVLP
Trigger: CGGCAAGACCATCAAGGCTCAGATCTGGGACACTGC...CAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR TCA 90 bp AAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGGCAGTGTCCCAGATCTaGGCCTTGATGGTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: KDRGRARTLGQSAGQAGQAVSQI*ALMVLP
Trigger: CGGCAAGACCATCAAGGCTCAGATCTGGGACACTGC...CTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
ENSMUST00000173987.2
CDS-3UTR TCA 90 bp AGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGATGTTGCTATCTGCATaGTCCCGCAGCTCCTTCAGC +
Preference number: 4 (lower is better)
Translates to: RQEQECAGLGMLEAVLALMLLSA*SRSSFS
Trigger: GCTGAAGGAGCTGCGGGATCATGCAGATAGCAACAT...CAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp AAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGCCTGAATGCTGCGAGTaGCGAACTCCACTCCGATGG +
Preference number: 4 (lower is better)
Translates to: KDRGRARTLGQSAGQAGQPECCE*RTPLRW
Trigger: CCATCGGAGTGGAGTTCGCCACTCGCAGCATTCAGG...CTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
ENSMUST00000173987.2
CDS-3UTR CCA 90 bp AGCCCAGAATGTCCACCTGCTCAGCCTCTGATGCCTGGCTCTTCGGGTATCAGCCACGGGCCTCATCAGTaGGCACAGCCCGAAGGTGGC +
Preference number: 4 (lower is better)
Translates to: SPECPPAQPLMPGSSGISHGPHQ*AQPEGG
Trigger: GCCACCTTCGGGCTGTGCCCACTGATGAGGCCCGTG...GCTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACATTCTGGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CAA 72 bp CCATCGGTGGTGGGTGGCACACTGATGTCCACCACGTaGTTGCCAGGGGACTCATCGTGGGCTGCACGGTCA +
Preference number: 4 (lower is better)
Translates to: PSVVGGTLMSTT*LPGDSSWAARS
Trigger: TGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCACCACCGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR TCA 90 bp GGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTTTCTGGTGAAGCGTaGCAGCAGGTTGCTCTTACC +
Preference number: 4 (lower is better)
Translates to: GSRTCTHAGSKCRASRAVVSGEA*QQVALT
Trigger: GGTAAGAGCAACCTGCTGTCACGCTTCACCAGAAAC...CACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173987.2
CDS-3UTR TCA 90 bp GGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGATGTTGCTATCTGCATaGTCCCGCAGCTCCTTCAGC +
Preference number: 4 (lower is better)
Translates to: GSRTCTHAGSKCRASRAVMLLSA*SRSSFS
Trigger: GCTGAAGGAGCTGCGGGATCATGCAGATAGCAACAT...CACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
ENSMUST00000173987.2
CDS-3UTR GCA 90 bp AGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGAGCGTGACAGCAGGTTaGTCTTACCTACACCTGAGT +
Preference number: 4 (lower is better)
Translates to: RQEQECAGLGMLEAVLALSVTAG*SYLHLS
Trigger: ACTCAGGTGTAGGTAAGAGCAACCTGCTGTCACGCT...CAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR GCA 90 bp CCTGGGAATGCTGGAGGCCGTGCTGGCACTGGCTATGGTGGTGTAGGCAGGAGGAGGCTCTGGCAGCACTaGAGCTTGTTGGGTCTCTGT +
Preference number: 4 (lower is better)
Translates to: PGNAGGRAGTGYGGVGRRRLWQH*SLLGLC
Trigger: ACAGAGACCCAACAAGCTGCAGTGCTGCCAGAGCCT...CCTCCTGCCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp ACTGATGTCCACCACGTTGTTGCCAGGGGACTCATCGTGGGCTGCACGGTCAGCGGCACAGCCCGAAGGTaGCGCAGGTCACTCTTGTTG +
Preference number: 4 (lower is better)
Translates to: TDVHHVVARGLIVGCTVSGTARR*RRSLLL
Trigger: CAACAAGAGTGACCTGCGCCACCTTCGGGCTGTGCC...GCTGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR TCA 90 bp GCAGGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTGGGCTATGTTGCTATCTGCATaGTCCCGCAGCTCCTTCAGC +
Preference number: 4 (lower is better)
Translates to: AGRTGEATGLLLFLGHWAMLLSA*SRSSFS
Trigger: GCTGAAGGAGCTGCGGGATCATGCAGATAGCAACAT...AGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp CCACCACGTTGTTGCCAGGGGACTCATCGTGGGCTGCACGGTCAGCGATTTGCTCGTCCACCTGAATGCTaGGAGTGGCGAACTCCACTC +
Preference number: 4 (lower is better)
Translates to: PPRCCQGTHRGLHGQRFARPPEC*EWRTPL
Trigger: GAGTGGAGTTCGCCACTCGCAGCATTCAGGTGGACG...AGCAAATCGCTGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR GCA 90 bp GTGGGTGGCACACTGATGTCCACCACGTTGTTGCCAGGGGACTCATCGTGGGCTTGCCGTCCACCTGAATaGTGCGAGTGGCGAACTCCA +
Preference number: 4 (lower is better)
Translates to: VGGTLMSTTLLPGDSSWACRPPE*CEWRTP
Trigger: TGGAGTTCGCCACTCGCAGCATTCAGGTGGACGGCA...AGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTGCCACCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR CCA 90 bp CTTCCTGGGCCATTGGGCTGGCAGGCGGAGCTCACTTGGAGGGTGGGAGCAGCCATGCTTCCTCTACATTaGTGGAATCCAAGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: LPGPLGWQAELTWRVGAAMLPLH*WNPRLR
Trigger: CCTCAGCCTTGGATTCCACCAATGTAGAGGAAGCAT...GGCTGCTCCCACCCTCCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR TCA 90 bp AGACAGGTTCCTGACCAGACACGGAGACGAGACAGAGAAGTGGGGATGGGCAGAGTCTTGCCGTCCACCTaGATGCTGCGAGTGGCGAAC +
Preference number: 4 (lower is better)
Translates to: RQVPDQTRRRDREVGMGRVLPST*MLRVAN
Trigger: GTTCGCCACTCGCAGCATTCAGGTGGACGGCAAGAC...TCTGCCCATCCCCACTTCTCTGTCTCGTCTCCGTGTCTGGTCAGGAACCTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp CAGGTTCCTGACCAGACACGGAGACGAGACAGAGAAGTGGGGATGGGCAGAGGACCTGAATGCTGCGAGTaGCGAACTCCACTCCGATGG +
Preference number: 4 (lower is better)
Translates to: QVPDQTRRRDREVGMGRGPECCE*RTPLRW
Trigger: CCATCGGAGTGGAGTTCGCCACTCGCAGCATTCAGG...TCCTCTGCCCATCCCCACTTCTCTGTCTCGTCTCCGTGTCTGGTCAGGAACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp CCTGGGAATGCTGGAGGCCGTGCTGGCACTGGCTATGGTGGTGTAGGCAGGAGGCAAGTTGTTCTTTTCTaGAAAGGCACGGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: PGNAGGRAGTGYGGVGRRQVVLF*KGTGLI
Trigger: GATGAGGCCCGTGCCTTTGCAGAAAAGAACAACTTG...CCTCCTGCCTACACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp ATGTCCACCTGCTCAGCCTCTGATGCCTGGCTCTTCGGGTATCAGCTCAGAGAGTGTCCACCACGTTGTTaGCAGGGGACTCATCGTGGG +
Preference number: 4 (lower is better)
Translates to: MSTCSASDAWLFGYQLRECPPRC*QGTHRG
Trigger: CCCACGATGAGTCCCCTGGCAACAACGTGGTGGACA...CTCTCTGAGCTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp AGACAGGTTCCTGACCAGACACGGAGACGAGACAGAGAAGTGGGGATGGGCAGATGTCCACCACGTTGTTaGCAGGGGACTCATCGTGGG +
Preference number: 4 (lower is better)
Translates to: RQVPDQTRRRDREVGMGRCPPRC*QGTHRG
Trigger: CCCACGATGAGTCCCCTGGCAACAACGTGGTGGACA...TCTGCCCATCCCCACTTCTCTGTCTCGTCTCCGTGTCTGGTCAGGAACCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp CTGATGTCCACCACGTTGTTGCCAGGGGACTCATCGTGGGCTGCACGGTCAGCGCGAACTCCACTCCGATaGTACTCTTGCTCTCTAGGT +
Preference number: 4 (lower is better)
Translates to: LMSTTLLPGDSSWAARSARTPLR*YSCSLG
Trigger: ACCTAGAGAGCAAGAGTACCATCGGAGTGGAGTTCG...CGCTGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR CCA 90 bp CTGGCCAAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCATGCTTCCTCTACATTaGTGGAATCCAAGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: LAKDRGRARTLGQSAGQAMLPLH*WNPRLR
Trigger: CCTCAGCCTTGGATTCCACCAATGTAGAGGAAGCAT...GGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTTGGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp CAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGTCCATCGGTGGTGGGTaGCACACTGATGTCCACCAC +
Preference number: 4 (lower is better)
Translates to: QREFGMRIQGQLVNWPERSIGGG*HTDVHH
Trigger: GTGGTGGACATCAGTGTGCCACCCACCACCGATGGA...CCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR TCA 90 bp GGCAGGCGGAGCTCACTTGGAGGGTGGGAGCAGCCTGTCCTAGAGGGACAAGGGAGGCTGAGGTCTCAATaGAGGACAAGTTGTTCTTTT +
Preference number: 4 (lower is better)
Translates to: GRRSSLGGWEQPVLEGQGRLRSQ*RTSCSF
Trigger: AAAAGAACAACTTGTCCTTCATTGAGACCTCAGCCT...CCCTTGTCCCTCTAGGACAGGCTGCTCCCACCCTCCAAGTGAGCTCCGCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp CACACTGATGTCCACCACGTTGTTGCCAGGGGACTCATCGTGGGCTGCACGGTCAGCGTGACAGCAGGTTaGTCTTACCTACACCTGAGT +
Preference number: 4 (lower is better)
Translates to: HTDVHHVVARGLIVGCTVSVTAG*SYLHLS
Trigger: ACTCAGGTGTAGGTAAGAGCAACCTGCTGTCACGCT...GACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR GCA 90 bp GGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGGCTATGAGGATGTTCTTGAATaGTTCCTCTACATTGGTGGA +
Preference number: 4 (lower is better)
Translates to: GAGVRRPGNAGGRAGTGYEDVLE*FLYIGG
Trigger: TCCACCAATGTAGAGGAAGCATTCAAGAACATCCTC...ATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp GGAGGAGGGAGAGGGGCAAGGGTGTCTTCTCCCAGCATAAATCTACAGGCAGGAAGGCTCTGGCAGCACTaGAGCTTGTTGGGTCTCTGT +
Preference number: 4 (lower is better)
Translates to: GGGRGARVSSPSINLQAGRLWQH*SLLGLC
Trigger: ACAGAGACCCAACAAGCTGCAGTGCTGCCAGAGCCT...TCCTGCCTGTAGATTTATGCTGGGAGAAGACACCCTTGCCCCTCTCCCTCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp GACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGCACATATGTCAAGTGCTTaGCAATGTCATATACCAGCA +
Preference number: 4 (lower is better)
Translates to: DVHARWVKVQGKPGSGGAHMSSA*QCHIPA
Trigger: TGCTGGTATATGACATTGCCAAGCACTTGACATATG...TGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
ENSMUST00000173987.2
CDS-3UTR TCA 90 bp GGAGGAGGGAGAGGGGCAAGGGTGTCTTCTCCCAGCATAAATCTACAGGCAGGAGTTTCTGGTGAAGCGTaGCAGCAGGTTGCTCTTACC +
Preference number: 4 (lower is better)
Translates to: GGGRGARVSSPSINLQAGVSGEA*QQVALT
Trigger: GGTAAGAGCAACCTGCTGTCACGCTTCACCAGAAAC...TCCTGCCTGTAGATTTATGCTGGGAGAAGACACCCTTGCCCCTCTCCCTCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR TCA 90 bp ATGTCCACCTGCTCAGCCTCTGATGCCTGGCTCTTCGGGTATCAGCTCAGAGAGATGTTGCTATCTGCATaGTCCCGCAGCTCCTTCAGC +
Preference number: 4 (lower is better)
Translates to: MSTCSASDAWLFGYQLREMLLSA*SRSSFS
Trigger: GCTGAAGGAGCTGCGGGATCATGCAGATAGCAACAT...CTCTCTGAGCTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR TCA 90 bp AGCCCAGAATGTCCACCTGCTCAGCCTCTGATGCCTGGCTCTTCGGGTATCAGCGGTGGAATCCAAGGCTaGGGTCTCAATGAAGGACAA +
Preference number: 4 (lower is better)
Translates to: SPECPPAQPLMPGSSGISGGIQG*GLNEGQ
Trigger: TTGTCCTTCATTGAGACCTCAGCCTTGGATTCCACC...GCTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACATTCTGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp CAGAGTGAGTCCCAGGACTGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAGCAGTGCACCCACTaGACCACGGTAGTACGCAGA +
Preference number: 4 (lower is better)
Translates to: QSESQDCQGYTEKPCLEKQQCTH*TTVVRR
Trigger: TCTGCGTACTACCGTGGTGCAGTGGGTGCACTGCTG...TTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCAGTCCTGGGACTCACTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
ENSMUST00000173987.2
CDS-3UTR GCA 90 bp GTTGGGTCTCTGTCCATCGGTGGTGGGTGGCACACTGATGTCCACCACGTTGTTGTCATATACCAGCAGTaGACCCACTGCACCACGGTA +
Preference number: 4 (lower is better)
Translates to: VGSLSIGGGWHTDVHHVVVIYQQ*THCTTV
Trigger: TACCGTGGTGCAGTGGGTGCACTGCTGGTATATGAC...AACAACGTGGTGGACATCAGTGTGCCACCCACCACCGATGGACAGAGACCCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR CCA 90 bp TCTACAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCATATGTCAAGTGCTTaGCAATGTCATATACCAGCA +
Preference number: 4 (lower is better)
Translates to: STGRSRSAQAWECWRPCWHMSSA*QCHIPA
Trigger: TGCTGGTATATGACATTGCCAAGCACTTGACATATG...CCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTGTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp GGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTGGGCTGGCCATATGTCAAGTGCTTaGCAATGTCATATACCAGCA +
Preference number: 4 (lower is better)
Translates to: GRTGEATGLLLFLGHWAGHMSSA*QCHIPA
Trigger: TGCTGGTATATGACATTGCCAAGCACTTGACATATG...GCCAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp TCAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGAGCACTGCAGCTTGTTaGGTCTCTGTCCATCGGTGG +
Preference number: 4 (lower is better)
Translates to: SERVWDEDTGPAGQLARESTAAC*VSVHRW
Trigger: CCACCGATGGACAGAGACCCAACAAGCTGCAGTGCT...CTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR TCA 90 bp AGGAGGAGGGAGAGGGGCAAGGGTGTCTTCTCCCAGCATAAATCTACAGGCAGGGGTGGAATCCAAGGCTaGGGTCTCAATGAAGGACAA +
Preference number: 4 (lower is better)
Translates to: RRRERGKGVFSQHKSTGRGGIQG*GLNEGQ
Trigger: TTGTCCTTCATTGAGACCTCAGCCTTGGATTCCACC...CCTGCCTGTAGATTTATGCTGGGAGAAGACACCCTTGCCCCTCTCCCTCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR TCA 90 bp GGTCAACTGGCCAGAGAGGAAAGGCGGTTTCGATCTCTGAAGTCTGGAAAACAGTGGTGGGTGGCACACTaGTGTCCACCACGTTGTTGC +
Preference number: 4 (lower is better)
Translates to: GQLAREERRFRSLKSGKQWWVAH*CPPRCC
Trigger: GCAACAACGTGGTGGACATCAGTGTGCCACCCACCA...CTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTCTCTGGCCAGTTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp TCAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGTCATATACCAGCAGTaGACCCACTGCACCACGGTA +
Preference number: 4 (lower is better)
Translates to: SERVWDEDTGPAGQLAREVIYQQ*THCTTV
Trigger: TACCGTGGTGCAGTGGGTGCACTGCTGGTATATGAC...CTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp TCAACTGGCCAGAGAGGAAAGGCGGTTTCGATCTCTGAAGTCTGGAAAACAGGAGGCACAGCCCGAAGGTaGCGCAGGTCACTCTTGTTG +
Preference number: 4 (lower is better)
Translates to: STGQRGKAVSISEVWKTGGTARR*RRSLLL
Trigger: CAACAAGAGTGACCTGCGCCACCTTCGGGCTGTGCC...TCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTCTCTGGCCAGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp AGCCCAGAATGTCCACCTGCTCAGCCTCTGATGCCTGGCTCTTCGGGTATCAGCATGCTTCCTCTACATTaGTGGAATCCAAGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: SPECPPAQPLMPGSSGISMLPLH*WNPRLR
Trigger: CCTCAGCCTTGGATTCCACCAATGTAGAGGAAGCAT...GCTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACATTCTGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CAA 72 bp CACCATCATTTCCTTCCTCCATACTACAGGAGCCACTaGCAGAGGACTCACTCTCCCCTCCTTGGAGCCCAA +
Preference number: 4 (lower is better)
Translates to: HHHFLPPYYRSH*QRTHSPLLGAQ
Trigger: TTGGGCTCCAAGGAGGGGAGAGTGAGTCCTCTGCAAGTGGCTCCTGTAGTATGGAGGAAGGAAATGATGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 72 bp AAGGGATACTCCTGCCTCCCAAGTTCACGGGCTTTCTaGAGCAGGTTCCGTTTGTTGCATGTGGGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: KGYSCLPSSRAF*SRFRLLHVGKG
Trigger: ACCCTTCCCCACATGCAACAAACGGAACCTGCTCAAGAAAGCCCGTGAACTTGGGAGGCAGGAGTATCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR GCA 90 bp TCAACTGGCCAGAGAGGAAAGGCGGTTTCGATCTCTGAAGTCTGGAAAACAGGACAGCAGTGCACCCACTaGACCACGGTAGTACGCAGA +
Preference number: 4 (lower is better)
Translates to: STGQRGKAVSISEVWKTGQQCTH*TTVVRR
Trigger: TCTGCGTACTACCGTGGTGCAGTGGGTGCACTGCTG...TCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTCTCTGGCCAGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp GAGGAAAGGCGGTTTCGATCTCTGAAGTCTGGAAAACAGGAGAAGCAGGTTCCTCCTGAATGCTGCGAGTaGCGAACTCCACTCCGATGG +
Preference number: 4 (lower is better)
Translates to: EERRFRSLKSGKQEKQVPPECCE*RTPLRW
Trigger: CCATCGGAGTGGAGTTCGCCACTCGCAGCATTCAGG...AGGAACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR CAA 72 bp CCTTCCTTGCCAGGACTCCAGATAAGGAGTCCATTGTaGGCAGCAGATGGAAGTGGCAAGCATGCTCATGCT +
Preference number: 4 (lower is better)
Translates to: PSLPGLQIRSPL*AADGSGKHAHA
Trigger: AGCATGAGCATGCTTGCCACTTCCATCTGCTGCCAACAATGGACTCCTTATCTGGAGTCCTGGCAAGGAAGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR TCA 90 bp CGATCTCTGAAGTCTGGAAAACAGGAGAAGCAGGTTCCTTCCACTCATCTTCCTTGGTGGGTGGCACACTaGTGTCCACCACGTTGTTGC +
Preference number: 4 (lower is better)
Translates to: RSLKSGKQEKQVPSTHLPWWVAH*CPPRCC
Trigger: GCAACAACGTGGTGGACATCAGTGTGCCACCCACCA...AGGAAGATGAGTGGAAGGAACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp AGAATGTCCACCTGCTCAGCCTCTGATGCCTGGCTCTTCGGGTATCAGCTCAGACAAGTTGTTCTTTTCTaGAAAGGCACGGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: RMSTCSASDAWLFGYQLRQVVLF*KGTGLI
Trigger: GATGAGGCCCGTGCCTTTGCAGAAAAGAACAACTTG...TCTGAGCTGATACCCGAAGAGCCAGGCATCAGAGGCTGAGCAGGTGGACATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp ACGGTAGATTTCTGTGAGGATGTTCTTGAATGCTTCCTCTACATTGGTGGAATCCACGGGCCTCATCAGTaGGCACAGCCCGAAGGTGGC +
Preference number: 4 (lower is better)
Translates to: TVDFCEDVLECFLYIGGIHGPHQ*AQPEGG
Trigger: GCCACCTTCGGGCTGTGCCCACTGATGAGGCCCGTG...GATTCCACCAATGTAGAGGAAGCATTCAAGAACATCCTCACAGAAATCTACCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR TCA 90 bp TTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGAAAGGCGGTAGGCTGAGGTCTCAATaGAGGACAAGTTGTTCTTTT +
Preference number: 4 (lower is better)
Translates to: FGMRIQGQLVNWPERKGGRLRSQ*RTSCSF
Trigger: AAAAGAACAACTTGTCCTTCATTGAGACCTCAGCCT...ACCGCCTTTCCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp GAGGAAAGGCGGTTTCGATCTCTGAAGTCTGGAAAACAGGAGAAGCAGGTTCCTGTCATATACCAGCAGTaGACCCACTGCACCACGGTA +
Preference number: 4 (lower is better)
Translates to: EERRFRSLKSGKQEKQVPVIYQQ*THCTTV
Trigger: TACCGTGGTGCAGTGGGTGCACTGCTGGTATATGAC...AGGAACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp TTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGAAAGGCGGTGAGGATGTTCTTGAATaGTTCCTCTACATTGGTGGA +
Preference number: 4 (lower is better)
Translates to: FGMRIQGQLVNWPERKGGEDVLE*FLYIGG
Trigger: TCCACCAATGTAGAGGAAGCATTCAAGAACATCCTC...ACCGCCTTTCCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp GGTCAACTGGCCAGAGAGGAAAGGCGGTTTCGATCTCTGAAGTCTGGAAAACAGCGAACTCCACTCCGATaGTACTCTTGCTCTCTAGGT +
Preference number: 4 (lower is better)
Translates to: GQLAREERRFRSLKSGKQRTPLR*YSCSLG
Trigger: ACCTAGAGAGCAAGAGTACCATCGGAGTGGAGTTCG...CTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTCTCTGGCCAGTTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 72 bp ATCCCAGCACTGATGATGCAGGGAGAAGGGGATTGCTaGGGCTTGCTGGGAGAAATCCTACCTCAAATAGAG +
Preference number: 4 (lower is better)
Translates to: IPALMMQGEGDC*GLLGEILPQIE
Trigger: CTCTATTTGAGGTAGGATTTCTCCCAGCAAGCCCAAGCAATCCCCTTCTCCCTGCATCATCAGTGCTGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 72 bp TCCCAGACTCTTCATTCTCTGACTGCTCCGGCTCCCTaGGTCCAGAATAGTTATTCATCTTCCCAACAGCCC +
Preference number: 4 (lower is better)
Translates to: SQTLHSLTAPAP*VQNSYSSSQQP
Trigger: GGGCTGTTGGGAAGATGAATAACTATTCTGGACCAAGGGAGCCGGAGCAGTCAGAGAATGAAGAGTCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR TCA 90 bp TCAACTGGCCAGAGAGGAAAGGCGGTTTCGATCTCTGAAGTCTGGAAAACAGGAGGTGGAATCCAAGGCTaGGGTCTCAATGAAGGACAA +
Preference number: 4 (lower is better)
Translates to: STGQRGKAVSISEVWKTGGGIQG*GLNEGQ
Trigger: TTGTCCTTCATTGAGACCTCAGCCTTGGATTCCACC...TCCTGTTTTCCAGACTTCAGAGATCGAAACCGCCTTTCCTCTCTGGCCAGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp CGATCTCTGAAGTCTGGAAAACAGGAGAAGCAGGTTCCTTCCACTCATCTTCCTGTCATATACCAGCAGTaGACCCACTGCACCACGGTA +
Preference number: 4 (lower is better)
Translates to: RSLKSGKQEKQVPSTHLPVIYQQ*THCTTV
Trigger: TACCGTGGTGCAGTGGGTGCACTGCTGGTATATGAC...AGGAAGATGAGTGGAAGGAACCTGCTTCTCCTGTTTTCCAGACTTCAGAGATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR GCA 90 bp CCCTCCTTGGAGCCCAAGATCCTTATCTCACAGCCTACTGTGCAAGATCAGCATCAAGTTGTTCTTTTCTaGAAAGGCACGGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: PSLEPKILISQPTVQDQHQVVLF*KGTGLI
Trigger: GATGAGGCCCGTGCCTTTGCAGAAAAGAACAACTTG...ATGCTGATCTTGCACAGTAGGCTGTGAGATAAGGATCTTGGGCTCCAAGGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR CCA 90 bp AGCAGTTGTATATACAAAACACGAAGATATTGCTTCACTTGCAGACAGGTTCCTCACGGGCCTCATCAGTaGGCACAGCCCGAAGGTGGC +
Preference number: 4 (lower is better)
Translates to: SSCIYKTRRYCFTCRQVPHGPHQ*AQPEGG
Trigger: GCCACCTTCGGGCTGTGCCCACTGATGAGGCCCGTG...AGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTTTTGTATATACAACTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp AATGCTAGTATAGGTGAGTGCAGGCATGTGCATCCTGTAAGAGCCTACAACATCAGCACTGCAGCTTGTTaGGTCTCTGTCCATCGGTGG +
Preference number: 4 (lower is better)
Translates to: NASIGECRHVHPVRAYNISTAAC*VSVHRW
Trigger: CCACCGATGGACAGAGACCCAACAAGCTGCAGTGCT...GATGTTGTAGGCTCTTACAGGATGCACATGCCTGCACTCACCTATACTAGCATT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR TCA 90 bp TTCCAGAAAATAAATTGTCCACTAAGCTCAGATAGACAGACAGACAGGCAGGCACCCAGATCTGAGCCTTaGTGGTCTTGCCGTCCACCT +
Preference number: 4 (lower is better)
Translates to: FQKINCPLSSDRQTDRQAPRSEP*WSCRPP
Trigger: AGGTGGACGGCAAGACCATCAAGGCTCAGATCTGGG...TGCCTGCCTGTCTGTCTGTCTATCTGAGCTTAGTGGACAATTTATTTTCTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR TCA 90 bp CAGAGTGAGTCCCAGGACTGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAGGCTGAGGTCTCAATaGAGGACAAGTTGTTCTTTT +
Preference number: 4 (lower is better)
Translates to: QSESQDCQGYTEKPCLEKRLRSQ*RTSCSF
Trigger: AAAAGAACAACTTGTCCTTCATTGAGACCTCAGCCT...TTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCAGTCCTGGGACTCACTCTG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CCA 90 bp GAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGAACATATGTCAAGTGCTTaGCAATGTCATATACCAGCA +
Preference number: 4 (lower is better)
Translates to: ERVWDEDTGPAGQLAREEHMSSA*QCHIPA
Trigger: TGCTGGTATATGACATTGCCAAGCACTTGACATATG...TTCCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
3UTR CAA 72 bp ACTGTTGCCCTCTACTGTCCCCATCAAGTGTCATTCTaGAGTAAAGACAGCCATGGTAGAGCTGACATCACC +
Preference number: 4 (lower is better)
Translates to: TVALYCPHQVSF*SKDSHGRADIT
Trigger: GGTGATGTCAGCTCTACCATGGCTGTCTTTACTCAAGAATGACACTTGATGGGGACAGTAGAGGGCAACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR GCA 90 bp AGCAGTTGTATATACAAAACACGAAGATATTGCTTCACTTGCAGACAGGTTCCTCGTCCACCTGAATGCTaGGAGTGGCGAACTCCACTC +
Preference number: 4 (lower is better)
Translates to: SSCIYKTRRYCFTCRQVPRPPEC*EWRTPL
Trigger: GAGTGGAGTTCGCCACTCGCAGCATTCAGGTGGACG...AGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTTTTGTATATACAACTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
3UTR CAA 72 bp TACCCTGGCTCTGCCTCTCATTTCCCCGAAGGATTGTaGACATTACAGGTGTTTACATTGAGTCCAACTTTG +
Preference number: 4 (lower is better)
Translates to: YPGSASHFPEGL*TLQVFTLSPTL
Trigger: CAAAGTTGGACTCAATGTAAACACCTGTAATGTCAACAATCCTTCGGGGAAATGAGAGGCAGAGCCAGGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 72 bp CTGTCTAAGATCATTTTAGTTGCCGTGACAAAGGGTTaGGGAGCAGGATATTGGAAAGAGGAGGGTCAGTTG +
Preference number: 4 (lower is better)
Translates to: LSKIILVAVTKG*GAGYWKEEGQL
Trigger: CAACTGACCCTCCTCTTTCCAATATCCTGCTCCCAAACCCTTTGTCACGGCAACTAAAATGATCTTAGACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 72 bp AAGATGAGTGCTGCTTATCAGCTTGCTCTTCATGGCTaGCTTAGCCTTTCTTACAGAACCCAGAACCACCAA +
Preference number: 4 (lower is better)
Translates to: KMSAAYQLALHG*LSLSYRTQNHQ
Trigger: TTGGTGGTTCTGGGTTCTGTAAGAAAGGCTAAGCAAGCCATGAAGAGCAAGCTGATAAGCAGCACTCATCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 72 bp TTTAGTGTCATGTGGAAATCAGAAGACAACTTGGAGTaGGTTCTTCCAGTACGTCAACTCCATTGGCAGTTC +
Preference number: 4 (lower is better)
Translates to: FSVMWKSEDNLE*VLPVRQLHWQF
Trigger: GAACTGCCAATGGAGTTGACGTACTGGAAGAACCAACTCCAAGTTGTCTTCTGATTTCCACATGACACTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 72 bp TCATGTGTTGGTCTTTGTAGTGTTTTCTCCAGTCCCTaGCTACACTATGACAGTTACAAACCCAACGATTCT +
Preference number: 4 (lower is better)
Translates to: SCVGLCSVFSSP*LHYDSYKPNDS
Trigger: AGAATCGTTGGGTTTGTAACTGTCATAGTGTAGCAAGGGACTGGAGAAAACACTACAAAGACCAACACATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 72 bp GACAACTTTATAGGGAGTCCTCATCTTTCACATGGTTaGAGACAGGGTCTTTCTTGTTTTACCTCTACAGAA +
Preference number: 4 (lower is better)
Translates to: DNFIGSPHLSHG*RQGLSCFTSTE
Trigger: TTCTGTAGAGGTAAAACAAGAAAGACCCTGTCTCAAACCATGTGAAAGATGAGGACTCCCTATAAAGTTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR GCA 90 bp ACCAAAGCATATAATGTGTTGCATGGACATTGCATATCTACTTACGTGTGTACAGAGGATGTTCTTGAATaGTTCCTCTACATTGGTGGA +
Preference number: 4 (lower is better)
Translates to: TKAYNVLHGHCISTYVCTEDVLE*FLYIGG
Trigger: TCCACCAATGTAGAGGAAGCATTCAAGAACATCCTC...TGTACACACGTAAGTAGATATGCAATGTCCATGCAACACATTATATGCTTTGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
3UTR CAA 72 bp AAAATATTTAGTGTCATGTGGAAATCAGAAGACAACTaGGAGTTGGTTCTTCCAGTACGTCAACTCCATTGG +
Preference number: 4 (lower is better)
Translates to: KIFSVMWKSEDN*ELVLPVRQLHW
Trigger: CCAATGGAGTTGACGTACTGGAAGAACCAACTCCAAGTTGTCTTCTGATTTCCACATGACACTAAATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR CAA 90 bp CAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTCAGCACTGCAGCTTGTaGGGTCTCTGTCCATCGGTG +
Preference number: 5 (lower is better)
Translates to: QAGAGVRRPGNAGGRAGTQHCSL*GLCPSV
Trigger: CACCGATGGACAGAGACCCAACAAGCTGCAGTGCTG...AGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp GGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGGCTATGGTGGTATGTCCACCACGTTGTaGCCAGGGGACTCATCGTGG +
Preference number: 5 (lower is better)
Translates to: GVRRPGNAGGRAGTGYGGMSTTL*PGDSSW
Trigger: CCACGATGAGTCCCCTGGCAACAACGTGGTGGACAT...ACCACCATAGCCAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp CAGGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTGGGCTGTGGCAGCACTGCAGCTaGTTGGGTCTCTGTCCATCG +
Preference number: 5 (lower is better)
Translates to: QAGQERPLDSCSSWAIGLWQHCS*LGLCPS
Trigger: CGATGGACAGAGACCCAACAAGCTGCAGTGCTGCCA...CAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp GGCAGGACAGGAGAGGCCACTGGACTCCTGCTCTTCCTGGGCCATTGGGCTGGCAAGCGTGACAGCAGGTaGCTCTTACCTACACCTGAG +
Preference number: 5 (lower is better)
Translates to: GRTGEATGLLLFLGHWAGKRDSR*LLPTPE
Trigger: CTCAGGTGTAGGTAAGAGCAACCTGCTGTCACGCTT...GCCAGCCCAATGGCCCAGGAAGAGCAGGAGTCCAGTGGCCTCTCCTGTCCTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR CAA 90 bp AGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTGAATGCTTCCTCTACATaGGTGGAATCCAAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: RQEQECAGLGMLEAVLALNASST*VESKAE
Trigger: CTCAGCCTTGGATTCCACCAATGTAGAGGAAGCATT...CAGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp GACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGCAAATGCTTCCTCTACATaGGTGGAATCCAAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: DVHARWVKVQGKPGSGGANASST*VESKAE
Trigger: CTCAGCCTTGGATTCCACCAATGTAGAGGAAGCATT...TGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp CGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGCACGTCATATGTCAAGTGCTaGGCAATGTCATATACCAGC +
Preference number: 5 (lower is better)
Translates to: RARTLGQSAGQAGQWWRTSYVKC*AMSYTS
Trigger: GCTGGTATATGACATTGCCAAGCACTTGACATATGA...CGTGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
ENSMUST00000173987.2
CDS-3UTR CAA 90 bp CGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAGTGGTGGCGCACGTCTGTGAGGATGTTCTaGAATGCTTCCTCTACATTG +
Preference number: 5 (lower is better)
Translates to: RARTLGQSAGQAGQWWRTSVRMF*NASSTL
Trigger: CAATGTAGAGGAAGCATTCAAGAACATCCTCACAGA...CGTGCGCCACCACTGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp CAAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCATCAATGAAGGACAAGTaGTTCTGCAAAGGCACGGGC +
Preference number: 5 (lower is better)
Translates to: QGSRTCTHAGSKCRASRASMKDK*FCKGTG
Trigger: GCCCGTGCCTTTGCAGAACAACTTGTCCTTCATTGA...TGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR CAA 90 bp CAGGCAGGAGCAGGAGTGCGCAGGCCTGGGAATGCTGGAGGCCGTGCTGGCACTTCATATGTCAAGTGCTaGGCAATGTCATATACCAGC +
Preference number: 5 (lower is better)
Translates to: QAGAGVRRPGNAGGRAGTSYVKC*AMSYTS
Trigger: GCTGGTATATGACATTGCCAAGCACTTGACATATGA...AGTGCCAGCACGGCCTCCAGCATTCCCAGGCCTGCGCACTCCTGCTCCTGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp CAAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCAAATGCTTCCTCTACATaGGTGGAATCCAAGGCTGAG +
Preference number: 5 (lower is better)
Translates to: QGSRTCTHAGSKCRASRANASST*VESKAE
Trigger: CTCAGCCTTGGATTCCACCAATGTAGAGGAAGCATT...TGCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp GATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGAAAGGCGGTTTCGACTGATGTCCACCACGTaGTTGCCAGGGGACTCATCG +
Preference number: 5 (lower is better)
Translates to: DEDTGPAGQLAREERRFRLMSTT*LPGDSS
Trigger: CGATGAGTCCCCTGGCAACAACGTGGTGGACATCAG...TCGAAACCGCCTTTCCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp GCTCTTCCTGGGCCATTGGGCTGGCAGGCGGAGCTCACTTGGAGGGTGGGAGCATCATATGTCAAGTGCTaGGCAATGTCATATACCAGC +
Preference number: 5 (lower is better)
Translates to: ALPGPLGWQAELTWRVGASYVKC*AMSYTS
Trigger: GCTGGTATATGACATTGCCAAGCACTTGACATATGA...TGCTCCCACCCTCCAAGTGAGCTCCGCCTGCCAGCCCAATGGCCCAGGAAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp CCAAGGATCGAGGACGTGCACGCACGCTGGGTCAAAGTGCAGGGCAAGCCGGGCTCTGTGAGGATGTTCTaGAATGCTTCCTCTACATTG +
Preference number: 5 (lower is better)
Translates to: PRIEDVHARWVKVQGKPGSVRMF*NASSTL
Trigger: CAATGTAGAGGAAGCATTCAAGAACATCCTCACAGA...GCCCGGCTTGCCCTGCACTTTGACCCAGCGTGCGTGCACGTCCTCGATCCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp GAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCAGAGAGGAAATGTCCACCACGTTGTaGCCAGGGGACTCATCGTGG +
Preference number: 5 (lower is better)
Translates to: ERVWDEDTGPAGQLAREEMSTTL*PGDSSW
Trigger: CCACGATGAGTCCCCTGGCAACAACGTGGTGGACAT...TTCCTCTCTGGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp ATCAGCTCAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCCTGATGTCCACCACGTaGTTGCCAGGGGACTCATCG +
Preference number: 5 (lower is better)
Translates to: ISSERVWDEDTGPAGQLALMSTT*LPGDSS
Trigger: CGATGAGTCCCCTGGCAACAACGTGGTGGACATCAG...GGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGAGCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp ATCAGCTCAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCCCAGCACTGCAGCTTGTaGGGTCTCTGTCCATCGGTG +
Preference number: 5 (lower is better)
Translates to: ISSERVWDEDTGPAGQLAQHCSL*GLCPSV
Trigger: CACCGATGGACAGAGACCCAACAAGCTGCAGTGCTG...GGCCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGAGCTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp ACTGATGTCCACCACGTTGTTGCCAGGGGACTCATCGTGGGCTGCACGGTCAGCCTCTTGCTCTCTAGGTaGAATTCGTTTCTGGTGAAG +
Preference number: 5 (lower is better)
Translates to: TDVHHVVARGLIVGCTVSLLLSR*NSFLVK
Trigger: CTTCACCAGAAACGAATTCAACCTAGAGAGCAAGAG...GCTGACCGTGCAGCCCACGATGAGTCCCCTGGCAACAACGTGGTGGACATCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS-3UTR CAA 90 bp CAGAGTGAGTCCCAGGACTGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAGCGTGACAGCAGGTaGCTCTTACCTACACCTGAG +
Preference number: 5 (lower is better)
Translates to: QSESQDCQGYTEKPCLEKKRDSR*LLPTPE
Trigger: CTCAGGTGTAGGTAAGAGCAACCTGCTGTCACGCTT...TTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCAGTCCTGGGACTCACTCTG
53% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173987.2
CDS-3UTR CAA 90 bp GTATCAGCTCAGAGAGAGTTTGGGATGAGGATACAGGGCCAGCTGGTCAACTGGCTCTTGCTCTCTAGGTaGAATTCGTTTCTGGTGAAG +
Preference number: 5 (lower is better)
Translates to: VSAQREFGMRIQGQLVNWLLLSR*NSFLVK
Trigger: CTTCACCAGAAACGAATTCAACCTAGAGAGCAAGAG...CCAGTTGACCAGCTGGCCCTGTATCCTCATCCCAAACTCTCTCTGAGCTGATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR CAA 90 bp GTTGTATATACAAAACACGAAGATATTGCTTCACTTGCAGACAGGTTCCTGACCTGGCAGCACTGCAGCTaGTTGGGTCTCTGTCCATCG +
Preference number: 5 (lower is better)
Translates to: VVYTKHEDIASLADRFLTWQHCS*LGLCPS
Trigger: CGATGGACAGAGACCCAACAAGCTGCAGTGCTGCCA...GGTCAGGAACCTGTCTGCAAGTGAAGCAATATCTTCGTGTTTTGTATATACAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173860.8
CDS-3UTR CAA 90 bp CATTTGTGTGTGCAAATAGTCTCTCCTAAGGGTCCAGGTGGGAGGACAACTTTAACTCCGATGGTACTCTaGCTCTCTAGGTTGAATTCG +
Preference number: 5 (lower is better)
Translates to: HLCVQIVSPKGPGGRTTLTPMVL*LSRLNS
Trigger: CGAATTCAACCTAGAGAGCAAGAGTACCATCGGAGT...TAAAGTTGTCCTCCCACCTGGACCCTTAGGAGAGACTATTTGCACACACAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS-3UTR CAA 90 bp AATGCTAGTATAGGTGAGTGCAGGCATGTGCATCCTGTAAGAGCCTACAACATCTCTGTGAGGATGTTCTaGAATGCTTCCTCTACATTG +
Preference number: 5 (lower is better)
Translates to: NASIGECRHVHPVRAYNISVRMF*NASSTL
Trigger: CAATGTAGAGGAAGCATTCAAGAACATCCTCACAGA...GATGTTGTAGGCTCTTACAGGATGCACATGCCTGCACTCACCTATACTAGCATT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057373.14
CDS CCA 72 bp GGACAAGTTGTTCTGCAAAGGCACGGGCCTCATCAGTaGGCACAGCCCGAAGGTGGCGCAGGTCACTCTTGT +
Preference number: 6 (lower is better)
Translates to: GQVVLQRHGPHQ*AQPEGGAGHSC
Trigger: ACAAGAGTGACCTGCGCCACCTTCGGGCTGTGCCCACTGATGAGGCCCGTGCCTTTGCAGAACAACTTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173987.2
CDS CCA 72 bp AGTTGTTCTTTTCTGCAAAGGCACGGGCCTCATCAGTaGGCACAGCCCGAAGGTGGCGCAGGTCACTCTTGT +
Preference number: 6 (lower is better)
Translates to: SCSFLQRHGPHQ*AQPEGGAGHSC
Trigger: ACAAGAGTGACCTGCGCCACCTTCGGGCTGTGCCCACTGATGAGGCCCGTGCCTTTGCAGAAAAGAACAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
CDS GCA 72 bp GTGCTTGGCAATGTCATATACCAGCAGTGCACCCACTaGACCACGGTAGTACGCAGAGGTAATGGCACGGTA +
Preference number: 6 (lower is better)
Translates to: VLGNVIYQQCTH*TTVVRRGNGTV
Trigger: TACCGTGCCATTACCTCTGCGTACTACCGTGGTGCAGTGGGTGCACTGCTGGTATATGACATTGCCAAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057373.14
ENSMUST00000172894.8
ENSMUST00000173860.8
ENSMUST00000173987.2
CDS CAA 90 bp CTGCGAGTGGCGAACTCCACTCCGATGGTACTCTTGCTCTCTAGGTaGAATTCGTTTCTGGTGAAGCGTGACAGCAGGTTGCTCTTACCT +
Preference number: 6 (lower is better)
Translates to: LRVANSTPMVLLLSR*NSFLVKRDSRLLLP
Trigger: AGGTAAGAGCAACCTGCTGTCACGCTTCACCAGAAACGAATTCAACCTAGAGAGCAAGAGTACCATCGGAGTGGAGTTCGCCACTCGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173987.2
CDS CAA 72 bp GCGAACTCCACTCCGATGGTACTCTTGCTCTCTAGGTaGAATTCGTTTCTGGTGAAGCGTGACAGCAGGTTG +
Preference number: 6 (lower is better)
Translates to: ANSTPMVLLLSR*NSFLVKRDSRL
Trigger: CAACCTGCTGTCACGCTTCACCAGAAACGAATTCAACCTAGAGAGCAAGAGTACCATCGGAGTGGAGTTCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173987.2
CDS CAA 72 bp ATGCTGCGAGTGGCGAACTCCACTCCGATGGTACTCTaGCTCTCTAGGTTGAATTCGTTTCTGGTGAAGCGT +
Preference number: 6 (lower is better)
Translates to: MLRVANSTPMVL*LSRLNSFLVKR
Trigger: ACGCTTCACCAGAAACGAATTCAACCTAGAGAGCAAGAGTACCATCGGAGTGGAGTTCGCCACTCGCAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173987.2
CDS CAA 90 bp TTGCTCTCTAGGTTGAATTCGTTTCTGGTGAAGCGTGACAGCAGGTaGCTCTTACCTACACCTGAGTCCCCAATAAGCACCACTTTGAAT +
Preference number: 6 (lower is better)
Translates to: LLSRLNSFLVKRDSR*LLPTPESPISTTLN
Trigger: ATTCAAAGTGGTGCTTATTGGGGACTCAGGTGTAGGTAAGAGCAACCTGCTGTCACGCTTCACCAGAAACGAATTCAACCTAGAGAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057373.14
ENSMUST00000173987.2