Pregenerated sensors for RAB11A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004771Ensembl transcript IDs: ENSMUST00000167569.8, ENSMUST00000168366.2, ENSMUST00000172298.8
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAAATATATTTAAATCTCAGACCTGGGAAATGGACTATACACAGCCTTCTAGGGGTGGTGGGCGGAACATaGATAGGAACCACATTGTTG | + |
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Preference number: 2 (lower is better) Translates to: QIYLNLRPGKWTIHSLLGVVGGT*IGTTLL Trigger: CAACAATGTGGTTCCTATTCATGTTCCGCCCACCAC...CCCTAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAGATTTAAATATATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168366.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGCAATCCTTAGATCTGTCAAAATATGTACTGTATTGAGAAGAGTGTCTTACCTCAGACCTGGGAAATaGACTATACACAGCCTTCTA | + |
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Preference number: 2 (lower is better) Translates to: RAILRSVKICTVLRRVSYLRPGK*TIHSLL Trigger: TAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAG...GTAAGACACTCTTCTCAATACAGTACATATTTTGACAGATCTAAGGATTGCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172298.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGGTATCCCACCATCCTTAATAACGTCTTTGCAGTTAACTTTCAGAAAACGTAGGCATTTTAGAAACTaGCTTCCACAATGGAAAATC | + |
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Preference number: 2 (lower is better) Translates to: AGIPPSLITSLQLTFRKRRHFRN*LPQWKI Trigger: GATTTTCCATTGTGGAAGTCAGTTTCTAAAATGCCT...ACGTTTTCTGAAAGTTAACTGCAAAGACGTTATTAAGGATGGTGGGATACCTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172298.8 |
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| 3UTR-3UTR TCA 90 bp | AGGGCAATCCTTAGATCTGTCAAAATATGTACTGTATTGAGAAGAGTGTCTTACAGAGAAGCCATAGCATaGAAAAGAACTGCAGTCATT | + |
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Preference number: 2 (lower is better) Translates to: RAILRSVKICTVLRRVSYREAIA*KRTAVI Trigger: AATGACTGCAGTTCTTTTTCATGCTATGGCTTCTCT...GTAAGACACTCTTCTCAATACAGTACATATTTTGACAGATCTAAGGATTGCCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172298.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGGTATCCCACCATCCTTAATAACGTCTTTGCAGTTAACTTTCAGAAAACGTGTGATAAAATTAGGCTaGATTTCACTTACTAGACAG | + |
|
Preference number: 2 (lower is better) Translates to: AGIPPSLITSLQLTFRKRVIKLG*ISLTRQ Trigger: CTGTCTAGTAAGTGAAATGCAGCCTAATTTTATCAC...ACGTTTTCTGAAAGTTAACTGCAAAGACGTTATTAAGGATGGTGGGATACCTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172298.8 |
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| 3UTR CCA 72 bp | GAATTACAAATATATTTAAATCTCAGACCTGGGAAATaGACTATACACAGCCTTCTAGGGGAAGAGACGCCT | + |
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Preference number: 3 (lower is better) Translates to: ELQIYLNLRPGK*TIHSLLGEETP Trigger: AGGCGTCTCTTCCCCTAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAGATTTAAATATATTTGTAATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168366.2 |
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| CDS-3UTR TCA 90 bp | ACAAATATATTTAAATCTCAGACCTGGGAAATGGACTATACACAGCCTTCTAGGGTGGTGGGCGGAACATaGATAGGAACCACATTGTTG | + |
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Preference number: 4 (lower is better) Translates to: TNIFKSQTWEMDYTQPSRVVGGT*IGTTLL Trigger: CAACAATGTGGTTCCTATTCATGTTCCGCCCACCAC...CCTAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAGATTTAAATATATTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167569.8 ENSMUST00000172298.8 |
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| CDS-3UTR TCA 90 bp | AGGGCAATCCTTAGATCTGTCAAAATATGTACTGTATTGAGAAGAGTGTCTTACGTGGTGGGCGGAACATaGATAGGAACCACATTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: RAILRSVKICTVLRRVSYVVGGT*IGTTLL Trigger: CAACAATGTGGTTCCTATTCATGTTCCGCCCACCAC...GTAAGACACTCTTCTCAATACAGTACATATTTTGACAGATCTAAGGATTGCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172298.8 |
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| CDS-3UTR GCA 90 bp | CAAATATATTTAAATCTCAGACCTGGGAAATGGACTATACACAGCCTTCTAGGGCTCTGCAAAAGCTCTTaGTTCATCTGTAGGAACTGC | + |
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Preference number: 4 (lower is better) Translates to: QIYLNLRPGKWTIHSLLGLCKSS*FICRNC Trigger: GCAGTTCCTACAGATGAAGCAAGAGCTTTTGCAGAG...CCCTAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAGATTTAAATATATTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168366.2 ENSMUST00000172298.8 |
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| CDS-3UTR GCA 90 bp | CAAATATATTTAAATCTCAGACCTGGGAAATGGACTATACACAGCCTTCTAGGGCAAACCATTCTTCTCTaGAAAAGCTCTTGCTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: QIYLNLRPGKWTIHSLLGQTILL*KSSCFI Trigger: GATGAAGCAAGAGCTTTTGCAGAGAAGAATGGTTTG...CCCTAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAGATTTAAATATATTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168366.2 ENSMUST00000172298.8 |
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| CDS-3UTR GCA 90 bp | AGGGCAATCCTTAGATCTGTCAAAATATGTACTGTATTGAGAAGAGTGTCTTACCAAACCATTCTTCTCTaGAAAAGCTCTTGCTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: RAILRSVKICTVLRRVSYQTILL*KSSCFI Trigger: GATGAAGCAAGAGCTTTTGCAGAGAAGAATGGTTTG...GTAAGACACTCTTCTCAATACAGTACATATTTTGACAGATCTAAGGATTGCCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172298.8 |
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| CDS-3UTR GCA 90 bp | CAAATATATTTAAATCTCAGACCTGGGAAATGGACTATACACAGCCTTCTAGGGGCTTCTGAGAAACAATaGGGTATATCTTTCCTAAAA | + |
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Preference number: 4 (lower is better) Translates to: QIYLNLRPGKWTIHSLLGASEKQ*GISFLK Trigger: TTTTAGGAAAGATATACCGCATTGTTTCTCAGAAGC...CCCTAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAGATTTAAATATATTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168366.2 |
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| CDS-3UTR CAA 90 bp | GCAGGTATCCCACCATCCTTAATAACGTCTTTGCAGTTAACTTTCAGAAAACGTGAACCACATTGTTGCTaGGAGACATGTCATTTTCAC | + |
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Preference number: 5 (lower is better) Translates to: AGIPPSLITSLQLTFRKREPHCC*ETCHFH Trigger: GTGAAAATGACATGTCTCCAAGCAACAATGTGGTTC...ACGTTTTCTGAAAGTTAACTGCAAAGACGTTATTAAGGATGGTGGGATACCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172298.8 |
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| CDS-3UTR CAA 90 bp | GCAGGTATCCCACCATCCTTAATAACGTCTTTGCAGTTAACTTTCAGAAAACGTCGTAAATCACTCTTATaGCCCACAAGCATGATAACA | + |
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Preference number: 5 (lower is better) Translates to: AGIPPSLITSLQLTFRKRRKSLL*PTSMIT Trigger: TGTTATCATGCTTGTGGGCAATAAGAGTGATTTACG...ACGTTTTCTGAAAGTTAACTGCAAAGACGTTATTAAGGATGGTGGGATACCTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172298.8 |
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| CDS-3UTR CAA 90 bp | CAAATATATTTAAATCTCAGACCTGGGAAATGGACTATACACAGCCTTCTAGGGGAACCACATTGTTGCTaGGAGACATGTCATTTTCAC | + |
|
Preference number: 5 (lower is better) Translates to: QIYLNLRPGKWTIHSLLGEPHCC*ETCHFH Trigger: GTGAAAATGACATGTCTCCAAGCAACAATGTGGTTC...CCCTAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAGATTTAAATATATTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167569.8 ENSMUST00000172298.8 |
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| CDS-3UTR CAA 90 bp | ACAAATATATTTAAATCTCAGACCTGGGAAATGGACTATACACAGCCTTCTAGGCGTAAATCACTCTTATaGCCCACAAGCATGATAACA | + |
|
Preference number: 5 (lower is better) Translates to: TNIFKSQTWEMDYTQPSRRKSLL*PTSMIT Trigger: TGTTATCATGCTTGTGGGCAATAAGAGTGATTTACG...CCTAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAGATTTAAATATATTTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168366.2 ENSMUST00000172298.8 |
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| CDS-3UTR CAA 90 bp | ACAAATATATTTAAATCTCAGACCTGGGAAATGGACTATACACAGCCTTCTAGGTCTCACCTGTTAGAATaGTCTGAAAAGCAGCTTCAA | + |
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Preference number: 5 (lower is better) Translates to: TNIFKSQTWEMDYTQPSRSHLLE*SEKQLQ Trigger: TTGAAGCTGCTTTTCAGACAATTCTAACAGGTGAGA...CCTAGAAGGCTGTGTATAGTCCATTTCCCAGGTCTGAGATTTAAATATATTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168366.2 |
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