Pregenerated sensors for RAB10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020671Ensembl transcript IDs: ENSMUST00000021001.10
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGTTAACTATCGTGAAAGATACAGCCAAGCAAACCACAAGCATCTaGAGGAGTTTATGCTGGGATGAAATGTCTCCTGCTCATGCTTCC | + |
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Preference number: 1 (lower is better) Translates to: QLTIVKDTAKQTTSI*RSLCWDEMSPAHAS Trigger: GGAAGCATGAGCAGGAGACATTTCATCCCAGCATAAACTCCTTCAGATGCTTGTGGTTTGCTTGGCTGTATCTTTCACGATAGTTAACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR GCA 90 bp | ATATCAAGGCCACTGGGAATGAGAATGGAAATCAAATATCACTTCTaGATTACCCTTTGTCCTCAGTTAACTATCGTGAAAGATACAGCC | + |
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Preference number: 1 (lower is better) Translates to: ISRPLGMRMEIKYHF*ITLCPQLTIVKDTA Trigger: GGCTGTATCTTTCACGATAGTTAACTGAGGACAAAGGGTAATGCAGAAGTGATATTTGATTTCCATTCTCATTCCCAGTGGCCTTGATAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR TCA 90 bp | GTTGATAAGAACTGGACTATAATACAACTGAAGTGCAGGGCTGAGTaGGCAAGTAAATCTCAAAATGAACTCACAGACATGATTTCTCTA | + |
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Preference number: 1 (lower is better) Translates to: VDKNWTIIQLKCRAE*ASKSQNELTDMISL Trigger: TAGAGAAATCATGTCTGTGAGTTCATTTTGAGATTTACTTGCTCACTCAGCCCTGCACTTCAGTTGTATTATAGTCCAGTTCTTATCAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR-3UTR CCA 90 bp | GGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTGCGGGAACCGGATGGTGGATaGCAGCAGATGGACAGGAGA | + |
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Preference number: 2 (lower is better) Translates to: GRVRQSQSAQLYTRSLLREPDGG*QQMDRR Trigger: TCTCCTGTCCATCTGCTGCCATCCACCATCCGGTTC...CCGCAAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR-3UTR CCA 90 bp | GGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTGCGGAAAACCAGTCTTTCCTaGGCTGCCGAACTGCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: GRVRQSQSAQLYTRSLLRKTSLS*AAELPE Trigger: CTCTGGCAGTTCGGCAGCCCAGGAAAGACTGGTTTT...CCGCAAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR-3UTR CCA 90 bp | GGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTGCGGAAGAAGAGAACCGGATaGTGGATGGCAGCAGATGGA | + |
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Preference number: 2 (lower is better) Translates to: GRVRQSQSAQLYTRSLLRKKRTG*WMAADG Trigger: TCCATCTGCTGCCATCCACCATCCGGTTCTCTTCTT...CCGCAAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR-3UTR CCA 90 bp | AGAAGGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTAAGAGAACCGGATGGTaGATGGCAGCAGATGGACAG | + |
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Preference number: 2 (lower is better) Translates to: RRAGQTEPECSALHEKPFKRTGW*MAADGQ Trigger: CTGTCCATCTGCTGCCATCCACCATCCGGTTCTCTT...AAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR-3UTR TCA 90 bp | AGAAGGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTCAAACCACAAGCATCTaGAGGAGTTTATGCTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: RRAGQTEPECSALHEKPFQTTSI*RSLCWD Trigger: ATCCCAGCATAAACTCCTTCAGATGCTTGTGGTTTG...AAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCCTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR-3UTR TCA 90 bp | AGACGTTCCTTTCCACATAAGGCACAGGACAAATTAACCCACATACAGTTCAAGCAAGCACATTATTCATaGCAGAAAATCCCACTGTTG | + |
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Preference number: 2 (lower is better) Translates to: RRSFPHKAQDKLTHIQFKQAHYS*QKIPLL Trigger: CAACAGTGGGATTTTCTGTCATGAATAATGTGCTTG...CTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAAAGGAACGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR CAA 90 bp | ACTGGGAATGAGAATGGAAATCAAATATCACTTCTGCATTACCCTTaGTCCTCAGTTAACTATCGTGAAAGATACAGCCAAGCAAACCAC | + |
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Preference number: 2 (lower is better) Translates to: TGNENGNQISLLHYP*SSVNYRERYSQANH Trigger: GTGGTTTGCTTGGCTGTATCTTTCACGATAGTTAACTGAGGACAAAGGGTAATGCAGAAGTGATATTTGATTTCCATTCTCATTCCCAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR-3UTR CAA 90 bp | AGAAGGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTCTTCTGCATTACCCTTaGTCCTCAGTTAACTATCGT | + |
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Preference number: 3 (lower is better) Translates to: RRAGQTEPECSALHEKPFLLHYP*SSVNYR Trigger: ACGATAGTTAACTGAGGACAAAGGGTAATGCAGAAG...AAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR TCA 72 bp | ATCGTGAAAGATACAGCCAAGCAAACCACAAGCATCTaGAGGAGTTTATGCTGGGATGAAATGTCTCCTGCT | + |
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Preference number: 3 (lower is better) Translates to: IVKDTAKQTTSI*RSLCWDEMSPA Trigger: AGCAGGAGACATTTCATCCCAGCATAAACTCCTTCAGATGCTTGTGGTTTGCTTGGCTGTATCTTTCACGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR TCA 72 bp | AACTGGACTATAATACAACTGAAGTGCAGGGCTGAGTaGGCAAGTAAATCTCAAAATGAACTCACAGACATG | + |
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Preference number: 3 (lower is better) Translates to: NWTIIQLKCRAE*ASKSQNELTDM Trigger: CATGTCTGTGAGTTCATTTTGAGATTTACTTGCTCACTCAGCCCTGCACTTCAGTTGTATTATAGTCCAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR TCA 72 bp | CAAATGTGTTCTTCAAAGGCCAAATCTCAATACATTTaGCAAACGCTACTAAGACCCACTCCTTCTTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: QMCSSKAKSQYI*QTLLRPTPSCS Trigger: AGAGCAAGAAGGAGTGGGTCTTAGTAGCGTTTGTCAAATGTATTGAGATTTGGCCTTTGAAGAACACATTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR GCA 72 bp | CCACTGGGAATGAGAATGGAAATCAAATATCACTTCTaGATTACCCTTTGTCCTCAGTTAACTATCGTGAAA | + |
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Preference number: 3 (lower is better) Translates to: PLGMRMEIKYHF*ITLCPQLTIVK Trigger: TTTCACGATAGTTAACTGAGGACAAAGGGTAATGCAGAAGTGATATTTGATTTCCATTCTCATTCCCAGTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR TCA 90 bp | AGAAGGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTCGATCAGGAGCAGCTTaGAAAGCAGGTCGTACGTCT | + |
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Preference number: 4 (lower is better) Translates to: RRAGQTEPECSALHEKPFRSGAA*KAGRTS Trigger: AGACGTACGACCTGCTTTTCAAGCTGCTCCTGATCG...AAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR TCA 90 bp | AGAAGGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTTGTAGTAGGAGGTTGTaGTGGTGTGAAATCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: RRAGQTEPECSALHEKPFCSRRL*WCEIAP Trigger: AGGAGCGATTTCACACCATCACAACCTCCTACTACA...AAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCCTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR TCA 90 bp | AGAAGGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTTGTCTTCAGCTAATGTaGGGAACGCCTTTTCGATGT | + |
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Preference number: 4 (lower is better) Translates to: RRAGQTEPECSALHEKPFCLQLM*GTPFRC Trigger: ACATCGAAAAGGCGTTCCTCACATTAGCTGAAGACA...AAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCCTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR GCA 90 bp | GGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTGCGGAAAAACCTAATACCATaGTCCCTTGCAATCTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: GRVRQSQSAQLYTRSLLRKNLIP*SLAICS Trigger: AGAACAGATTGCAAGGGAGCATGGTATTAGGTTTTT...CCGCAAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR GCA 90 bp | AGAAGGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTCAATCTGTTCTCCTTTaGCTTTCGGTACAACTCTCT | + |
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Preference number: 4 (lower is better) Translates to: RRAGQTEPECSALHEKPFQSVLL*LSVQLS Trigger: AGAGAGTTGTACCGAAAGGCAAAGGAGAACAGATTG...AAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR CCA 90 bp | AGAAGGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTTTTCCACATCTTCATTaGCATGCTCATCTATGTTTC | + |
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Preference number: 4 (lower is better) Translates to: RRAGQTEPECSALHEKPFFPHLH*HAHLCF Trigger: GAAACATAGATGAGCATGCCAATGAAGATGTGGAAA...AAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCCTTCT 47% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR TCA 90 bp | AGACGTTCCTTTCCACATAAGGCACAGGACAAATTAACCCACATACAGTTCAAGCGCCTCCTCCACTGCTaGTATCTACGTTTTCACTGT | + |
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Preference number: 4 (lower is better) Translates to: RRSFPHKAQDKLTHIQFKRLLHC*YLRFHC Trigger: ACAGTGAAAACGTAGATATCAGCAGTGGAGGAGGCG...CTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAAAGGAACGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR GCA 90 bp | AGACGTTCCTTTCCACATAAGGCACAGGACAAATTAACCCACATACAGTTCAAGAATACCATGCTCCCTTaGAATCTGTTCTCCTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: RRSFPHKAQDKLTHIQFKNTMLP*NLFSFA Trigger: GGCAAAGGAGAACAGATTGCAAGGGAGCATGGTATT...CTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAAAGGAACGTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR GCA 90 bp | AGACGTTCCTTTCCACATAAGGCACAGGACAAATTAACCCACATACAGTTCAAGACATCTTCATTGGCATaGTCATCTATGTTTCTAAGC | + |
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Preference number: 4 (lower is better) Translates to: RRSFPHKAQDKLTHIQFKTSSLA*SSMFLS Trigger: GCTTAGAAACATAGATGAGCATGCCAATGAAGATGT...CTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAAAGGAACGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| 3UTR CAA 72 bp | GAGAATGGAAATCAAATATCACTTCTGCATTACCCTTaGTCCTCAGTTAACTATCGTGAAAGATACAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: ENGNQISLLHYP*SSVNYRERYSQ Trigger: TTGGCTGTATCTTTCACGATAGTTAACTGAGGACAAAGGGTAATGCAGAAGTGATATTTGATTTCCATTCTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR CAA 90 bp | GGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTGCGGTCCCATATCTGTAGCTaGATCTTCTTTCCTTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: GRVRQSQSAQLYTRSLLRSHICS*IFFPCS Trigger: ACTACAAGGAAAGAAGATCAAGCTACAGATATGGGA...CCGCAAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR CAA 90 bp | AGAAGGGCGGGTCAGACAGAGCCAGAGTGCTCAGCTTTACACGAGAAGCCTTTTGCAATCTGTTCTCCTTaGCCTTTCGGTACAACTCTC | + |
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Preference number: 5 (lower is better) Translates to: RRAGQTEPECSALHEKPFAICSP*PFGTTL Trigger: GAGAGTTGTACCGAAAGGCAAAGGAGAACAGATTGC...AAAAGGCTTCTCGTGTAAAGCTGAGCACTCTGGCTCTGTCTGACCCGCCCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR CAA 90 bp | AGACGTTCCTTTCCACATAAGGCACAGGACAAATTAACCCACATACAGTTCAAGCCGATCAGGAGCAGCTaGAAAAGCAGGTCGTACGTC | + |
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Preference number: 5 (lower is better) Translates to: RRSFPHKAQDKLTHIQFKPIRSS*KSRSYV Trigger: GACGTACGACCTGCTTTTCAAGCTGCTCCTGATCGG...CTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAAAGGAACGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR CAA 90 bp | AGACGTTCCTTTCCACATAAGGCACAGGACAAATTAACCCACATACAGTTCAAGTCAAAGCTTTTACCGTaGGTGATGTCATACACTAGC | + |
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Preference number: 5 (lower is better) Translates to: RRSFPHKAQDKLTHIQFKSKLLP*VMSYTS Trigger: GCTAGTGTATGACATCACCAACGGTAAAAGCTTTGA...CTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAAAGGAACGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR CAA 90 bp | AGACGTTCCTTTCCACATAAGGCACAGGACAAATTAACCCACATACAGTTCAAGTCGTCCATGTCACACTaGTTCCCTAGTAACATTCTT | + |
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Preference number: 5 (lower is better) Translates to: RRSFPHKAQDKLTHIQFKSSMSH*FPSNIL Trigger: AAGAATGTTACTAGGGAACAAGTGTGACATGGACGA...CTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAAAGGAACGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR CAA 90 bp | AGACGTTCCTTTCCACATAAGGCACAGGACAAATTAACCCACATACAGTTCAAGGAAATAAAGGTGGTATaGAAGGCATCGTCCGAAAAA | + |
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Preference number: 5 (lower is better) Translates to: RRSFPHKAQDKLTHIQFKEIKVV*KASSEK Trigger: TTTTTCGGACGATGCCTTCAATACCACCTTTATTTC...CTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAAAGGAACGTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS-3UTR CAA 90 bp | AGACGTTCCTTTCCACATAAGGCACAGGACAAATTAACCCACATACAGTTCAAGCTTTCCACATCTTCATaGGCATGCTCATCTATGTTT | + |
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Preference number: 5 (lower is better) Translates to: RRSFPHKAQDKLTHIQFKLSTSS*ACSSMF Trigger: AAACATAGATGAGCATGCCAATGAAGATGTGGAAAG...CTTGAACTGTATGTGGGTTAATTTGTCCTGTGCCTTATGTGGAAAGGAACGTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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| CDS CAA 72 bp | TCTTCATTGGCATGCTCATCTATGTTTCTAAGCCACTaGCTGATGTTCTCAAAGCTTTTACCGTTGGTGATG | + |
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Preference number: 6 (lower is better) Translates to: SSLACSSMFLSH*LMFSKLLPLVM Trigger: CATCACCAACGGTAAAAGCTTTGAGAACATCAGCAAGTGGCTTAGAAACATAGATGAGCATGCCAATGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021001.10 |
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