Pregenerated sensors for R3HDML (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078949Ensembl transcript IDs: ENSMUST00000109416.3
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CTGCCCAATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGTCATCCCGAGCAGAGATGTaGCGCTTCCGGCGGTGCCGG | + |
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Preference number: 4 (lower is better) Translates to: LPNSCSPSYFGGGIFQGSSRAEM*RFRRCR Trigger: CCGGCACCGCCGGAAGCGCCACATCTCTGCTCGGGA...TGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAATTGGGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR GCA 90 bp | GTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGTCAGGCCCAGCTAGGGAGCAGACAGGACCACTaGAGAGCCAAGGGCAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: VLPLILGEESFKGQAQLGSRQDH*RAKGSV Trigger: CACACTGCCCTTGGCTCTGCAGTGGTCCTGTCTGCT...CCCTAGCTGGGCCTGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CCA 90 bp | TTTGGGGGAGGAATCTTTCAAGGGTCAGGCCCAGCTAGGGGTGACATAACATTGCGGAACCGGCCGGAATaGATAGAGAGGTTCTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: FGGGIFQGSGPARGDITLRNRPE*IERFWP Trigger: GGGCCAGAACCTCTCTATCCATTCCGGCCGGTTCCG...CAATGTTATGTCACCCCTAGCTGGGCCTGACCCTTGAAAGATTCCTCCCCCAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR TCA 90 bp | TTTGGGGGAGGAATCTTTCAAGGGTCAGGCCCAGCTAGGGGTGACATAACATTGAAGGCCCCCACTGTGTaGCCCATCCAAAGGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: FGGGIFQGSGPARGDITLKAPTV*PIQRRR Trigger: CCTTCTCCTTTGGATGGGTCACACAGTGGGGGCCTT...CAATGTTATGTCACCCCTAGCTGGGCCTGACCCTTGAAAGATTCCTCCCCCAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CCA 90 bp | GGAGGAATCTTTCAAGGGTCAGGCCCAGCTAGGGGTGACATAACATTGGGCCAGCCATATACTCCATGTTaGCAGCAGGTGGGTGTACGC | + |
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Preference number: 4 (lower is better) Translates to: GGIFQGSGPARGDITLGQPYTPC*QQVGVR Trigger: GCGTACACCCACCTGCTGCCAACATGGAGTATATGG...CTGGCCCAATGTTATGTCACCCCTAGCTGGGCCTGACCCTTGAAAGATTCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CCA 90 bp | TTTGGGGGAGGAATCTTTCAAGGGTCAGGCCCAGCTAGGGGTGACATAACATTGAGCTGTGAGGGTCCATaGGTCCAGATGCACTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: FGGGIFQGSGPARGDITLSCEGP*VQMHWV Trigger: CACCCAGTGCATCTGGACCCATGGACCCTCACAGCT...CAATGTTATGTCACCCCTAGCTGGGCCTGACCCTTGAAAGATTCCTCCCCCAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| 3UTR CAA 72 bp | GGTAGGGGCTGCCCAATTCCTGTTCTCCCTCTTATTTaGGGGGAGGAATCTTTCAAGGGTCAGGCCCAGCTA | + |
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Preference number: 4 (lower is better) Translates to: GRGCPIPVLPLI*GEESFKGQAQL Trigger: TAGCTGGGCCTGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAATTGGGCAGCCCCTACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR GCA 90 bp | CTGCCCAATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGTCAGTCCATGGGTCCAGATaGACTGGGTGGCCCAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LPNSCSPSYFGGGIFQGSVHGSR*TGWPRL Trigger: AAGCCTGGGCCACCCAGTGCATCTGGACCCATGGAC...TGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAATTGGGCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR GCA 90 bp | GGGCTGCCCAATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGCAGCCGACTGGAGGATaGCCACACCATCTGGGTATA | + |
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Preference number: 4 (lower is better) Translates to: GLPNSCSPSYFGGGIFQGQPTGG*PHHLGI Trigger: TATACCCAGATGGTGTGGGCATCCTCCAGTCGGCTG...CCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAATTGGGCAGCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CCA 90 bp | ATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGTCAGGCCCAGACACAGCTGTGTTCTTaGGTCGGCCCTGGACCAGTG | + |
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Preference number: 4 (lower is better) Translates to: IPVLPLILGEESFKGQAQTQLCS*VGPGPV Trigger: CACTGGTCCAGGGCCGACCCAAGAACACAGCTGTGT...CTGGGCCTGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR TCA 90 bp | ATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGTCAGGCCCAGGTACTTCATCAGCTGTaGGGGTCCATGGGTCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: IPVLPLILGEESFKGQAQVLHQL*GSMGPD Trigger: ATCTGGACCCATGGACCCTCACAGCTGATGAAGTAC...CTGGGCCTGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR GCA 90 bp | GCCCAATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGTCAGGGCAGACCTGGCCAGCTaGTCATCCCAAACCATATAC | + |
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Preference number: 4 (lower is better) Translates to: AQFLFSLLFWGRNLSRVRADLAS*SSQTIY Trigger: GTATATGGTTTGGGATGAGCAGCTGGCCAGGTCTGC...CCTGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAATTGGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR TCA 90 bp | CTGCCCAATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGTCAGGAGCCTGTTGGATTTaGGCCCAGAGAAGCACATGT | + |
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Preference number: 4 (lower is better) Translates to: LPNSCSPSYFGGGIFQGSGACWI*AQRSTC Trigger: ACATGTGCTTCTCTGGGCTCAAATCCAACAGGCTCC...TGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAATTGGGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR GCA 90 bp | TTTGGGGGAGGAATCTTTCAAGGGTCAGGCCCAGCTAGGGGTGACATAACATTGAGCACATGTTGCTGTTaGAGTTGCCTTGGTAACTGG | + |
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Preference number: 4 (lower is better) Translates to: FGGGIFQGSGPARGDITLSTCCC*SCLGNW Trigger: CCAGTTACCAAGGCAACTGCAACAGCAACATGTGCT...CAATGTTATGTCACCCCTAGCTGGGCCTGACCCTTGAAAGATTCCTCCCCCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CCA 90 bp | GAAAAGACATTTATAAAGAATGGTAGGGGCTGCCCAATTCCTGTTCTCCCTCTTCACAGCCCAGCCGACTaGAGGATGCCCACACCATCT | + |
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Preference number: 4 (lower is better) Translates to: EKTFIKNGRGCPIPVLPLHSPAD*RMPTPS Trigger: AGATGGTGTGGGCATCCTCCAGTCGGCTGGGCTGTG...AAGAGGGAGAACAGGAATTGGGCAGCCCCTACCATTCTTTATAAATGTCTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR GCA 90 bp | GAAAAGACATTTATAAAGAATGGTAGGGGCTGCCCAATTCCTGTTCTCCCTCTTAAGGGCAGTGTGGGGTaGAATCCTTTGGAGCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: EKTFIKNGRGCPIPVLPLKGSVG*NPLEPG Trigger: TCCCGGCTCCAAAGGATTGCACCCCACACTGCCCTT...AAGAGGGAGAACAGGAATTGGGCAGCCCCTACCATTCTTTATAAATGTCTTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CCA 90 bp | ACATTTATAAAGAATGGTAGGGGCTGCCCAATTCCTGTTCTCCCTCTTATTTTGCATGTTGGCAGCAGGTaGGTGTACGCTGGCCCGGAT | + |
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Preference number: 4 (lower is better) Translates to: TFIKNGRGCPIPVLPLILHVGSR*VYAGPD Trigger: ATCCGGGCCAGCGTACACCCACCTGCTGCCAACATG...CAAAATAAGAGGGAGAACAGGAATTGGGCAGCCCCTACCATTCTTTATAAATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CCA 90 bp | ACATTTATAAAGAATGGTAGGGGCTGCCCAATTCCTGTTCTCCCTCTTATTTTGCAGGTGGGTGTACGCTaGCCCGGATGTGGTTGTGAT | + |
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Preference number: 4 (lower is better) Translates to: TFIKNGRGCPIPVLPLILQVGVR*PGCGCD Trigger: ATCACAACCACATCCGGGCCAGCGTACACCCACCTG...CAAAATAAGAGGGAGAACAGGAATTGGGCAGCCCCTACCATTCTTTATAAATGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CCA 90 bp | ACATTTATAAAGAATGGTAGGGGCTGCCCAATTCCTGTTCTCCCTCTTATTTTGAGGCTTCAGCAGACCTaGCCAGCTGCTCATCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: TFIKNGRGCPIPVLPLILRLQQT*PAAHPK Trigger: TTTGGGATGAGCAGCTGGCCAGGTCTGCTGAAGCCT...CAAAATAAGAGGGAGAACAGGAATTGGGCAGCCCCTACCATTCTTTATAAATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS GCA 90 bp | AGGATGCCCACACCATCTGGGTATAGTGGGAGCAGACAGGACCACTaGAGAGCCAAGGGCAGTGTGGGGTGCAATCCTTTGGAGCCGGGA | + |
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Preference number: 5 (lower is better) Translates to: RMPTPSGYSGSRQDH*RAKGSVGCNPLEPG Trigger: TCCCGGCTCCAAAGGATTGCACCCCACACTGCCCTTGGCTCTGCAGTGGTCCTGTCTGCTCCCACTATACCCAGATGGTGTGGGCATCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS GCA 90 bp | GATGCTGCTACAGGTGTTAATGGCACAGCCCAGCCGACTGGAGGATaGCCACACCATCTGGGTATAGTGGGAGCAGACAGGACCACTGCA | + |
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Preference number: 5 (lower is better) Translates to: DAATGVNGTAQPTGG*PHHLGIVGADRTTA Trigger: TGCAGTGGTCCTGTCTGCTCCCACTATACCCAGATGGTGTGGGCATCCTCCAGTCGGCTGGGCTGTGCCATTAACACCTGTAGCAGCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CCA 90 bp | GTTGCTGTTGCAGTTGCCTTGGTAACTGGGAGGACAGGCAGAACATaGCTTCCCGGCCTTGTAGGGTGCCTCTCCGATCCAGTTGCCCTT | + |
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Preference number: 5 (lower is better) Translates to: VAVAVALVTGRTGRT*LPGLVGCLSDPVAL Trigger: AAGGGCAACTGGATCGGAGAGGCACCCTACAAGGCCGGGAAGCCATGTTCTGCCTGTCCTCCCAGTTACCAAGGCAACTGCAACAGCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS TCA 90 bp | GCAGAGCCAAGGGCAGTGTGGGGTGCAATCCTTTGGAGCCGGGAATaGGTAATGGCGCTTCTCCTCAGACCAAGACCTCACAAGGTCTAC | + |
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Preference number: 5 (lower is better) Translates to: AEPRAVWGAILWSRE*VMALLLRPRPHKVY Trigger: GTAGACCTTGTGAGGTCTTGGTCTGAGGAGAAGCGCCATTACTCATTCCCGGCTCCAAAGGATTGCACCCCACACTGCCCTTGGCTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CCA 90 bp | AGGTCTACCACAGAACGGAACCGGCCGGAATGGATAGAGAGGTTCTaGCCCACGTACTTCATCAGCTGTGAGGGTCCATGGGTCCAGATG | + |
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Preference number: 5 (lower is better) Translates to: RSTTERNRPEWIERF*PTYFISCEGPWVQM Trigger: CATCTGGACCCATGGACCCTCACAGCTGATGAAGTACGTGGGCCAGAACCTCTCTATCCATTCCGGCCGGTTCCGTTCTGTGGTAGACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CAA 90 bp | GGGGGAGGAATCTTTCAAGGGTCAGGCCCAGCTAGGGGTGACATAACATTGGGCGGGAGCCTGTTGGATTaGAGCCCAGAGAAGCACATG | + |
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Preference number: 5 (lower is better) Translates to: GGGIFQGSGPARGDITLGGSLLD*SPEKHM Trigger: CATGTGCTTCTCTGGGCTCAAATCCAACAGGCTCCC...GCCCAATGTTATGTCACCCCTAGCTGGGCCTGACCCTTGAAAGATTCCTCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CCA 90 bp | GACCAAGACCTCACAAGGTCTACCACAGAACGGAACCGGCCGGAATaGATAGAGAGGTTCTGGCCCACGTACTTCATCAGCTGTGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: DQDLTRSTTERNRPE*IERFWPTYFISCEG Trigger: ACCCTCACAGCTGATGAAGTACGTGGGCCAGAACCTCTCTATCCATTCCGGCCGGTTCCGTTCTGTGGTAGACCTTGTGAGGTCTTGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CAA 90 bp | GGGCTGCCCAATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGGCTGTTGCAGTTGCCTaGGTAACTGGGAGGACAGGC | + |
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Preference number: 5 (lower is better) Translates to: GLPNSCSPSYFGGGIFQGAVAVA*VTGRTG Trigger: GCCTGTCCTCCCAGTTACCAAGGCAACTGCAACAGC...CCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAATTGGGCAGCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CCA 90 bp | CATCCCAAACCATATACTCCATGTTGGCAGCAGGTGGGTGTACGCTaGCCCGGATGTGGTTGTGATAATCCAGTAAAGCGCTCATGTCCC | + |
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Preference number: 5 (lower is better) Translates to: HPKPYTPCWQQVGVR*PGCGCDNPVKRSCP Trigger: GGGACATGAGCGCTTTACTGGATTATCACAACCACATCCGGGCCAGCGTACACCCACCTGCTGCCAACATGGAGTATATGGTTTGGGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CAA 90 bp | ATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGTCAGGCCCAGACCCATGGGAGCCTGTaGGATTTGAGCCCAGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: IPVLPLILGEESFKGQAQTHGSL*DLSPEK Trigger: CTTCTCTGGGCTCAAATCCAACAGGCTCCCATGGGT...CTGGGCCTGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CAA 90 bp | GCCCAATTCCTGTTCTCCCTCTTATTTTGGGGGAGGAATCTTTCAAGGGTCAGGCCAGAGAAGCACATGTaGCTGTTGCAGTTGCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: AQFLFSLLFWGRNLSRVRPEKHM*LLQLPW Trigger: CCAAGGCAACTGCAACAGCAACATGTGCTTCTCTGG...CCTGACCCTTGAAAGATTCCTCCCCCAAAATAAGAGGGAGAACAGGAATTGGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS-3UTR CAA 90 bp | GAAAAGACATTTATAAAGAATGGTAGGGGCTGCCCAATTCCTGTTCTCCCTCTTGTGTTGCCCCACACATaGATGCTGCTACAGGTGTTA | + |
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Preference number: 5 (lower is better) Translates to: EKTFIKNGRGCPIPVLPLVLPHT*MLLQVL Trigger: TAACACCTGTAGCAGCATCAATGTGTGGGGCAACAC...AAGAGGGAGAACAGGAATTGGGCAGCCCCTACCATTCTTTATAAATGTCTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CCA 72 bp | GACAGGGGCCACACAGCTGTGTTCTTGGGTCGGCCCTaGACCAGTGTGGTGTTGGGCATCCGTAAGGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: DRGHTAVFLGRP*TSVVLGIRKAP Trigger: GGGGGCCTTACGGATGCCCAACACCACACTGGTCCAGGGCCGACCCAAGAACACAGCTGTGTGGCCCCTGTC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS TCA 72 bp | AGTGTGGTGTTGGGCATCCGTAAGGCCCCCACTGTGTaGCCCATCCAAAGGAGAAGGCCTGTGAGGCCCACG | + |
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Preference number: 6 (lower is better) Translates to: SVVLGIRKAPTV*PIQRRRPVRPT Trigger: CGTGGGCCTCACAGGCCTTCTCCTTTGGATGGGTCACACAGTGGGGGCCTTACGGATGCCCAACACCACACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CCA 72 bp | GCAGTTGCCTTGGTAACTGGGAGGACAGGCAGAACATaGCTTCCCGGCCTTGTAGGGTGCCTCTCCGATCCA | + |
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Preference number: 6 (lower is better) Translates to: AVALVTGRTGRT*LPGLVGCLSDP Trigger: TGGATCGGAGAGGCACCCTACAAGGCCGGGAAGCCATGTTCTGCCTGTCCTCCCAGTTACCAAGGCAACTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CAA 90 bp | AGACAGGACCACTGCAGAGCCAAGGGCAGTGTGGGGTGCAATCCTTaGGAGCCGGGAATGAGTAATGGCGCTTCTCCTCAGACCAAGACC | + |
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Preference number: 6 (lower is better) Translates to: RQDHCRAKGSVGCNP*EPGMSNGASPQTKT Trigger: GGTCTTGGTCTGAGGAGAAGCGCCATTACTCATTCCCGGCTCCAAAGGATTGCACCCCACACTGCCCTTGGCTCTGCAGTGGTCCTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS GCA 72 bp | CACTGGGTGGCCCAGGCTTCAGCAGACCTGGCCAGCTaGTCATCCCAAACCATATACTCCATGTTGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: HWVAQASADLAS*SSQTIYSMLAA Trigger: TGCTGCCAACATGGAGTATATGGTTTGGGATGAGCAGCTGGCCAGGTCTGCTGAAGCCTGGGCCACCCAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS GCA 72 bp | AGACAGGACCACTGCAGAGCCAAGGGCAGTGTGGGGTaGAATCCTTTGGAGCCGGGAATGAGTAATGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: RQDHCRAKGSVG*NPLEPGMSNGA Trigger: AGCGCCATTACTCATTCCCGGCTCCAAAGGATTGCACCCCACACTGCCCTTGGCTCTGCAGTGGTCCTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS GCA 72 bp | ACAGGTGTTAATGGCACAGCCCAGCCGACTGGAGGATaGCCACACCATCTGGGTATAGTGGGAGCAGACAGG | + |
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Preference number: 6 (lower is better) Translates to: TGVNGTAQPTGG*PHHLGIVGADR Trigger: CCTGTCTGCTCCCACTATACCCAGATGGTGTGGGCATCCTCCAGTCGGCTGGGCTGTGCCATTAACACCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS TCA 72 bp | AGGGCAGTGTGGGGTGCAATCCTTTGGAGCCGGGAATaGGTAATGGCGCTTCTCCTCAGACCAAGACCTCAC | + |
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Preference number: 6 (lower is better) Translates to: RAVWGAILWSRE*VMALLLRPRPH Trigger: GTGAGGTCTTGGTCTGAGGAGAAGCGCCATTACTCATTCCCGGCTCCAAAGGATTGCACCCCACACTGCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS GCA 72 bp | AGGACAGGCAGAACATGGCTTCCCGGCCTTGTAGGGTaGCTCTCCGATCCAGTTGCCCTTAATGGCGTAGTT | + |
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Preference number: 6 (lower is better) Translates to: RTGRTWLPGLVG*LSDPVALNGVV Trigger: AACTACGCCATTAAGGGCAACTGGATCGGAGAGGCACCCTACAAGGCCGGGAAGCCATGTTCTGCCTGTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CCA 72 bp | ACAGAACGGAACCGGCCGGAATGGATAGAGAGGTTCTaGCCCACGTACTTCATCAGCTGTGAGGGTCCATGG | + |
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Preference number: 6 (lower is better) Translates to: TERNRPEWIERF*PTYFISCEGPW Trigger: CCATGGACCCTCACAGCTGATGAAGTACGTGGGCCAGAACCTCTCTATCCATTCCGGCCGGTTCCGTTCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CCA 72 bp | CTCACAAGGTCTACCACAGAACGGAACCGGCCGGAATaGATAGAGAGGTTCTGGCCCACGTACTTCATCAGC | + |
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Preference number: 6 (lower is better) Translates to: LTRSTTERNRPE*IERFWPTYFIS Trigger: GCTGATGAAGTACGTGGGCCAGAACCTCTCTATCCATTCCGGCCGGTTCCGTTCTGTGGTAGACCTTGTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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| CDS CCA 72 bp | CTCATCCCAAACCATATACTCCATGTTGGCAGCAGGTaGGTGTACGCTGGCCCGGATGTGGTTGTGATAATC | + |
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Preference number: 6 (lower is better) Translates to: LIPNHILHVGSR*VYAGPDVVVII Trigger: GATTATCACAACCACATCCGGGCCAGCGTACACCCACCTGCTGCCAACATGGAGTATATGGTTTGGGATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109416.3 |
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