Pregenerated sensors for R3HDM4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035781Ensembl transcript IDs: ENSMUST00000045628.15, ENSMUST00000171416.2, ENSMUST00000217976.2, ENSMUST00000218750.2, ENSMUST00000218970.2
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTGAGCACGGACCGCAGGCGACGGCTGATGCGCCTGAAGCACTCGTaGGGTGTGAAGACAGGGTCCTCTCTCCGTCGGTCCTCCCCACGG | + |
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Preference number: 1 (lower is better) Translates to: LSTDRRRRLMRLKHS*GVKTGSSLRRSSPR Trigger: CCGTGGGGAGGACCGACGGAGAGAGGACCCTGTCTTCACACCCCACGAGTGCTTCAGGCGCATCAGCCGTCGCCTGCGGTCCGTGCTCAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218970.2 |
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| 3UTR GCA 90 bp | CCTCTCTCCGTCGGTCCTCCCCACGGCCAGGCCCACGTCTCCGCTTaGCCTGGCTCTCATCCTCCAAGTAACGGAGCACTCGCTCTTGCT | + |
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Preference number: 1 (lower is better) Translates to: PLSVGPPHGQAHVSA*PGSHPPSNGALALA Trigger: AGCAAGAGCGAGTGCTCCGTTACTTGGAGGATGAGAGCCAGGGCAAGCGGAGACGTGGGCCTGGCCGTGGGGAGGACCGACGGAGAGAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218970.2 |
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| 3UTR CCA 90 bp | ACCCCTGGAGGGCCCCCAGCGGTCTCCAGCAGTGTTAGCAGGTACTaGGTATTCTCCAAACGCTGCAGACTCTTCCGTCCCTTAGCTCTG | + |
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Preference number: 1 (lower is better) Translates to: TPGGPPAVSSSVSRY*VFSKRCRLFRPLAL Trigger: CAGAGCTAAGGGACGGAAGAGTCTGCAGCGTTTGGAGAATACCCAGTACCTGCTAACACTGCTGGAGACCGCTGGGGGCCCTCCAGGGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217976.2 |
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| 3UTR TCA 90 bp | GGTCTGCAGAGTCCTAGAGAGAGGACCAGCCACCCTCATCAGAGCTaGAACATGGAGGGTCAGGCAGGGGTCACAACAGAGCCCACTACC | + |
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Preference number: 1 (lower is better) Translates to: GLQSPRERTSHPHQS*NMEGQAGVTTEPTT Trigger: GGTAGTGGGCTCTGTTGTGACCCCTGCCTGACCCTCCATGTTTCAGCTCTGATGAGGGTGGCTGGTCCTCTCTCTAGGACTCTGCAGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045628.15 |
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| 3UTR CCA 90 bp | TATAGGGCCCCATTAGGTCTCCCTACCCAAATACAAGTACCAGGGTaGGGAGCTACAAGGCCTCCCTGTGTGATCTGGGACATGAAGGGG | + |
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Preference number: 1 (lower is better) Translates to: YRAPLGLPTQIQVPG*GATRPPCVIWDMKG Trigger: CCCCTTCATGTCCCAGATCACACAGGGAGGCCTTGTAGCTCCCCACCCTGGTACTTGTATTTGGGTAGGGAGACCTAATGGGGCCCTATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR CCA 90 bp | AGGGGATTCCTGAAGGGAAGGGGTGGCATTCAAATTCTGAAAGCGTaGAAGATCTTATTAGCAGACAGAGGTCTGGGCCGGGCGAGGCAG | + |
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Preference number: 1 (lower is better) Translates to: RGFLKGRGGIQILKA*KILLADRGLGRARQ Trigger: CTGCCTCGCCCGGCCCAGACCTCTGTCTGCTAATAAGATCTTCCACGCTTTCAGAATTTGAATGCCACCCCTTCCCTTCAGGAATCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR TCA 90 bp | TCAAAGAATCACACAGAAGGGGAAGGGAAGGAGGGCCAGGCCTGCTaGACATATAAGACCTCTGCAGTGACCACAGCTATGCTGAGCAGC | + |
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Preference number: 1 (lower is better) Translates to: SKNHTEGEGKEGQAC*TYKTSAVTTAMLSS Trigger: GCTGCTCAGCATAGCTGTGGTCACTGCAGAGGTCTTATATGTTCAGCAGGCCTGGCCCTCCTTCCCTTCCCCTTCTGTGTGATTCTTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045628.15 |
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| 3UTR-3UTR GCA 90 bp | TGCGAAGATGCCAGGTGCAGCAGGAGTCAGGTCCCCATCTTCCACCCCTGGAGGTGGTTGATAAAATGCTaGTTGCGTCTGGACGCTGAG | + |
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Preference number: 2 (lower is better) Translates to: CEDARCSRSQVPIFHPWRWLIKC*LRLDAE Trigger: CTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCA...CCTCCAGGGGTGGAAGATGGGGACCTGACTCCTGCTGCACCTGGCATCTTCGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000217976.2 |
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| 3UTR-3UTR TCA 90 bp | ACACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAGTCCTAGGGCAAGGGGATTCCTaGAGGGAAGGGGTGGCATTC | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTRKCPGEVCRVLGQGDS*REGVAF Trigger: GAATGCCACCCCTTCCCTTCAGGAATCCCCTTGCCC...TAGGACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR-3UTR CCA 90 bp | GGGAGCTACAAGGCCTCCCTGTGTGATCTGGGACATGAAGGGGCAAGGGCAAGGCCTGAAGGGAAGGGGTaGCATTCAAATTCTGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: GSYKASLCDLGHEGARARPEGKG*HSNSES Trigger: GCTTTCAGAATTTGAATGCCACCCCTTCCCTTCAGG...CCTTGCCCTTGCCCCTTCATGTCCCAGATCACACAGGGAGGCCTTGTAGCTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR-3UTR TCA 90 bp | ACACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAGTCCTACTGCTACTCCTTGCCTaGGCTTCTGTCTCAAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTRKCPGEVCRVLLLLLA*ASVSKK Trigger: TTTCTTTGAGACAGAAGCTCAGGCAAGGAGTAGCAG...TAGGACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR-3UTR CCA 90 bp | CATACATGTGCGCCACACACACACACACAGACAGACAGACAGACAGACAGACAGCCTGAAGGGAAGGGGTaGCATTCAAATTCTGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: HTCAPHTHTQTDRQTDRQPEGKG*HSNSES Trigger: GCTTTCAGAATTTGAATGCCACCCCTTCCCTTCAGG...CTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGTGTGTGTGTGGCGCACATGTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR-3UTR CCA 90 bp | GTAACAGTCTGCTACTCCTTGCCTGAGCTTCTGTCTCAAAGAAAGCTAAACAGACCTCCCTGTGTGATCTaGGACATGAAGGGGCAAGGG | + |
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Preference number: 2 (lower is better) Translates to: VTVCYSLPELLSQRKLNRPPCVI*DMKGQG Trigger: CCCTTGCCCCTTCATGTCCCAGATCACACAGGGAGG...TCTGTTTAGCTTTCTTTGAGACAGAAGCTCAGGCAAGGAGTAGCAGACTGTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR-3UTR CCA 90 bp | TGTCCAGGTTCATGGCACATGGCGTGCATACATGTGCGCCACACACACACACACCAAATTCTGAAAGCGTaGAAGATCTTATTAGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: CPGSWHMACIHVRHTHTHQILKA*KILLAD Trigger: GTCTGCTAATAAGATCTTCCACGCTTTCAGAATTTG...GTGTGTGTGTGTGTGGCGCACATGTATGCACGCCATGTGCCATGAACCTGGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR-3UTR CCA 90 bp | CATACATGTGCGCCACACACACACACACAGACAGACAGACAGACAGACAGACAGCAAATTCTGAAAGCGTaGAAGATCTTATTAGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: HTCAPHTHTQTDRQTDRQQILKA*KILLAD Trigger: GTCTGCTAATAAGATCTTCCACGCTTTCAGAATTTG...CTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGTGTGTGTGTGGCGCACATGTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR CCA 72 bp | GACCGCAGGCGACGGCTGATGCGCCTGAAGCACTCGTaGGGTGTGAAGACAGGGTCCTCTCTCCGTCGGTCC | + |
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Preference number: 3 (lower is better) Translates to: DRRRRLMRLKHS*GVKTGSSLRRS Trigger: GGACCGACGGAGAGAGGACCCTGTCTTCACACCCCACGAGTGCTTCAGGCGCATCAGCCGTCGCCTGCGGTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218970.2 |
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| 3UTR CCA 72 bp | GGGCCCCCAGCGGTCTCCAGCAGTGTTAGCAGGTACTaGGTATTCTCCAAACGCTGCAGACTCTTCCGTCCC | + |
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Preference number: 3 (lower is better) Translates to: GPPAVSSSVSRY*VFSKRCRLFRP Trigger: GGGACGGAAGAGTCTGCAGCGTTTGGAGAATACCCAGTACCTGCTAACACTGCTGGAGACCGCTGGGGGCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217976.2 |
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| 3UTR CCA 72 bp | GAGAGAGGACCAGCCACCCTCATCAGAGCTGAAACATaGAGGGTCAGGCAGGGGTCACAACAGAGCCCACTA | + |
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Preference number: 3 (lower is better) Translates to: ERGPATLIRAET*RVRQGSQQSPL Trigger: TAGTGGGCTCTGTTGTGACCCCTGCCTGACCCTCCATGTTTCAGCTCTGATGAGGGTGGCTGGTCCTCTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045628.15 |
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| 3UTR-3UTR CAA 90 bp | CCCCTGGAGGGCCCCCAGCGGTCTCCAGCAGTGTTAGCAGGTACTGGGTATTCTTTCCTCACAGCCTGGTaGATAAAATGCTGCTTGCGT | + |
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Preference number: 3 (lower is better) Translates to: PLEGPQRSPAVLAGTGYSFLTAW*IKCCLR Trigger: ACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAA...AGAATACCCAGTACCTGCTAACACTGCTGGAGACCGCTGGGGGCCCTCCAGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000217976.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGGCCCCCAGCGGTCTCCAGCAGTGTTAGCAGGTACTGGGTATTCTCCAAACTTGATAAAATGCTGCTaGCGTCTGGACGCTGAGACC | + |
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Preference number: 3 (lower is better) Translates to: EGPQRSPAVLAGTGYSPNLIKCC*RLDAET Trigger: GGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAA...GTTTGGAGAATACCCAGTACCTGCTAACACTGCTGGAGACCGCTGGGGGCCCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000217976.2 |
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| 3UTR CCA 72 bp | CCATTAGGTCTCCCTACCCAAATACAAGTACCAGGGTaGGGAGCTACAAGGCCTCCCTGTGTGATCTGGGAC | + |
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Preference number: 3 (lower is better) Translates to: PLGLPTQIQVPG*GATRPPCVIWD Trigger: GTCCCAGATCACACAGGGAGGCCTTGTAGCTCCCCACCCTGGTACTTGTATTTGGGTAGGGAGACCTAATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR GCA 72 bp | CTTGTCCAGGTTCATGGCACATGGCGTGCATACATGTaGGCCACACACACACACACAGACAGACAGACAGAC | + |
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Preference number: 3 (lower is better) Translates to: LVQVHGTWRAYM*ATHTHTDRQTD Trigger: GTCTGTCTGTCTGTCTGTGTGTGTGTGTGTGGCGCACATGTATGCACGCCATGTGCCATGAACCTGGACAAG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| 3UTR CCA 72 bp | ACACACACACACACACACACACACAAGAAAGTGTCCTaGGGAGGTCTGCAGAGTCCTAGAGAGAGGACCAGC | + |
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Preference number: 3 (lower is better) Translates to: THTHTHTHKKVS*GGLQSPRERTS Trigger: GCTGGTCCTCTCTCTAGGACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGTGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045628.15 |
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| 3UTR CCA 72 bp | CTGAAGGGAAGGGGTGGCATTCAAATTCTGAAAGCGTaGAAGATCTTATTAGCAGACAGAGGTCTGGGCCGG | + |
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Preference number: 3 (lower is better) Translates to: LKGRGGIQILKA*KILLADRGLGR Trigger: CCGGCCCAGACCTCTGTCTGCTAATAAGATCTTCCACGCTTTCAGAATTTGAATGCCACCCCTTCCCTTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | TCTCTCCGTCGGTCCTCCCCACGGCCAGGCCCACGTCTCCGCTTGCCCTGGCTCCCCATCTTCCACCCCTaGAGGGCCCCCAGCGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: SLRRSSPRPGPRLRLPWLPIFHP*RAPSGL Trigger: GAGACCGCTGGGGGCCCTCCAGGGGTGGAAGATGGG...GAGCCAGGGCAAGCGGAGACGTGGGCCTGGCCGTGGGGAGGACCGACGGAGAGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000218970.2 |
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| CDS-3UTR GCA 90 bp | TCGGTCCTCCCCACGGCCAGGCCCACGTCTCCGCTTGCCCTGGCTCTCATCCTCCCACATAGGTGGCATTaGTGCAGGCCTCTGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SVLPTARPTSPLALALILPHRWH*CRPLRR Trigger: TCTTCGCAGAGGCCTGCAGCAATGCCACCTATGTGG...GAGGATGAGAGCCAGGGCAAGCGGAGACGTGGGCCTGGCCGTGGGGAGGACCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218970.2 |
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| CDS-3UTR CCA 90 bp | TCGTGGGGTGTGAAGACAGGGTCCTCTCTCCGTCGGTCCTCCCCACGGCCAGGCAGTGTTAGCAGGTACTaGGAGCCTGGTCTCCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: SWGVKTGSSLRRSSPRPGSVSRY*EPGLPA Trigger: AGCGGGGAGACCAGGCTCCCAGTACCTGCTAACACT...GCCTGGCCGTGGGGAGGACCGACGGAGAGAGGACCCTGTCTTCACACCCCACGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000218970.2 |
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| CDS-3UTR TCA 90 bp | TGGCATAAGGAGAGGGGAGAAGGAGGAGGAGAGGACAGTCTGAAAGGCAGGCAGGGATGCGGCTGCGCTTaGGCACGGACCGCAGGCGAC | + |
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Preference number: 4 (lower is better) Translates to: WHKERGEGGGEDSLKGRQGCGCA*ARTAGD Trigger: GTCGCCTGCGGTCCGTGCTCAAGCGCAGCCGCATCC...CTGCCTGCCTTTCAGACTGTCCTCTCCTCCTCCTTCTCCCCTCTCCTTATGCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR GCA 90 bp | CTGCGCTTGAGCACGGACCGCAGGCGACGGCTGATGCGCCTGAAGCACTCGTGGCATAGGTGGCATTGCTaGAGGCCTCTGCGAAGATGC | + |
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Preference number: 4 (lower is better) Translates to: LRLSTDRRRRLMRLKHSWHRWHC*RPLRRC Trigger: GCATCTTCGCAGAGGCCTGCAGCAATGCCACCTATG...CCACGAGTGCTTCAGGCGCATCAGCCGTCGCCTGCGGTCCGTGCTCAAGCGCAG 63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218970.2 |
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| CDS-3UTR TCA 90 bp | TCTGCGAAGATGCCAGGTGCAGCAGGAGTCAGGTCCCCATCTTCCACCCCTGGACTCCGGGCCGCCTTCTaGGTTGTCCAGAGCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: SAKMPGAAGVRSPSSTPGLRAAF*VVQSHH Trigger: ATGGTGGCTCTGGACAACTCAGAAGGCGGCCCGGAG...TCCAGGGGTGGAAGATGGGGACCTGACTCCTGCTGCACCTGGCATCTTCGCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000217976.2 |
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| CDS-3UTR TCA 90 bp | TCCGCTTGCCCTGGCTCTCATCCTCCAAGTAACGGAGCACTCGCTCTTGCTCCTCTCCGGGCCGCCTTCTaGGTTGTCCAGAGCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: SACPGSHPPSNGALALAPLRAAF*VVQSHH Trigger: ATGGTGGCTCTGGACAACTCAGAAGGCGGCCCGGAG...AGGAGCAAGAGCGAGTGCTCCGTTACTTGGAGGATGAGAGCCAGGGCAAGCGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218970.2 |
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| CDS-3UTR GCA 90 bp | ACGGCTGATGCGCCTGAAGCACTCGTGGGGTGTGAAGACAGGGTCCTCTCTCCGATTGCTGCAGGCCTCTaGGAAGATGCCAGGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: TADAPEALVGCEDRVLSPIAAGL*EDARCS Trigger: GCTGCACCTGGCATCTTCGCAGAGGCCTGCAGCAAT...CGGAGAGAGGACCCTGTCTTCACACCCCACGAGTGCTTCAGGCGCATCAGCCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218970.2 |
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| CDS-3UTR CCA 90 bp | CTGGAGGGCCCCCAGCGGTCTCCAGCAGTGTTAGCAGGTACTGGGTATTCTCCATGCCAAGAGATTAGCTaGAGCCCAGGAGCTCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: LEGPQRSPAVLAGTGYSPCQEIS*SPGAQA Trigger: GGCCTGAGCTCCTGGGCTCCAGCTAATCTCTTGGCA...TGGAGAATACCCAGTACCTGCTAACACTGCTGGAGACCGCTGGGGGCCCTCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217976.2 |
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| CDS-3UTR GCA 90 bp | AGCGTGGAAGATCTTATTAGCAGACAGAGGTCTGGGCCGGGCGAGGCAGCTGGCCCACATAGGTGGCATTaGTGCAGGCCTCTGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SVEDLISRQRSGPGEAAGPHRWH*CRPLRR Trigger: TCTTCGCAGAGGCCTGCAGCAATGCCACCTATGTGG...GCCAGCTGCCTCGCCCGGCCCAGACCTCTGTCTGCTAATAAGATCTTCCACGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | ACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAGTCCTAGACCCATCTTCCACCCCTaGAGGGCCCCCAGCGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: THTHTHKKVSWGGLQSPRPIFHP*RAPSGL Trigger: GAGACCGCTGGGGGCCCTCCAGGGGTGGAAGATGGG...TCTAGGACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | GAGGGCCCCCAGCGGTCTCCAGCAGTGTTAGCAGGTACTGGGTATTCTCCAAACGCTCAGGCCAGTGCTTaGCAAGAACTGCAGGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: EGPQRSPAVLAGTGYSPNAQASA*QELQGE Trigger: CTCTCCCTGCAGTTCTTGCCAAGCACTGGCCTGAGC...GTTTGGAGAATACCCAGTACCTGCTAACACTGCTGGAGACCGCTGGGGGCCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000217976.2 |
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| CDS-3UTR GCA 90 bp | TGGCATAAGGAGAGGGGAGAAGGAGGAGGAGAGGACAGTCTGAAAGGCAGGCAGATTGCTGCAGGCCTCTaGGAAGATGCCAGGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: WHKERGEGGGEDSLKGRQIAAGL*EDARCS Trigger: GCTGCACCTGGCATCTTCGCAGAGGCCTGCAGCAAT...CTGCCTGCCTTTCAGACTGTCCTCTCCTCCTCCTTCTCCCCTCTCCTTATGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR TCA 90 bp | CATACATGTGCGCCACACACACACACACAGACAGACAGACAGACAGACAGACAGCTCCGGGCCGCCTTCTaGGTTGTCCAGAGCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: HTCAPHTHTQTDRQTDRQLRAAF*VVQSHH Trigger: ATGGTGGCTCTGGACAACTCAGAAGGCGGCCCGGAG...CTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGTGTGTGTGTGGCGCACATGTATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR TCA 90 bp | GGGAGCTACAAGGCCTCCCTGTGTGATCTGGGACATGAAGGGGCAAGGGCAAGGCAGCACTGGCTGAGATaGGATCCATGTATTGGCACA | + |
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Preference number: 4 (lower is better) Translates to: GSYKASLCDLGHEGARARQHWLR*DPCIGT Trigger: TGTGCCAATACATGGATCTCATCTCAGCCAGTGCTG...CCTTGCCCTTGCCCCTTCATGTCCCAGATCACACAGGGAGGCCTTGTAGCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR GCA 90 bp | TGTCCAGGTTCATGGCACATGGCGTGCATACATGTGCGCCACACACACACACACCATAGGTGGCATTGCTaGAGGCCTCTGCGAAGATGC | + |
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Preference number: 4 (lower is better) Translates to: CPGSWHMACIHVRHTHTHHRWHC*RPLRRC Trigger: GCATCTTCGCAGAGGCCTGCAGCAATGCCACCTATG...GTGTGTGTGTGTGTGGCGCACATGTATGCACGCCATGTGCCATGAACCTGGACA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR TCA 90 bp | TGGCATAAGGAGAGGGGAGAAGGAGGAGGAGAGGACAGTCTGAAAGGCAGGCAGCAGGTCAGCACTGGCTaGGATGAGATCCATGTATTG | + |
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Preference number: 4 (lower is better) Translates to: WHKERGEGGGEDSLKGRQQVSTG*DEIHVL Trigger: CAATACATGGATCTCATCTCAGCCAGTGCTGACCTG...CTGCCTGCCTTTCAGACTGTCCTCTCCTCCTCCTTCTCCCCTCTCCTTATGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR GCA 90 bp | GGCAAGGGGATTCCTGAAGGGAAGGGGTGGCATTCAAATTCTGAAAGCGTGGAAATTGCTGCAGGCCTCTaGGAAGATGCCAGGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: GKGIPEGKGWHSNSESVEIAAGL*EDARCS Trigger: GCTGCACCTGGCATCTTCGCAGAGGCCTGCAGCAAT...TTCCACGCTTTCAGAATTTGAATGCCACCCCTTCCCTTCAGGAATCCCCTTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR GCA 90 bp | ATTCTGAAAGCGTGGAAGATCTTATTAGCAGACAGAGGTCTGGGCCGGGCGAGGCATAGGTGGCATTGCTaGAGGCCTCTGCGAAGATGC | + |
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Preference number: 4 (lower is better) Translates to: ILKAWKILLADRGLGRARHRWHC*RPLRRC Trigger: GCATCTTCGCAGAGGCCTGCAGCAATGCCACCTATG...CCTCGCCCGGCCCAGACCTCTGTCTGCTAATAAGATCTTCCACGCTTTCAGAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR GCA 90 bp | ACCAGGTCCGAATTCCTCACAGCCTGGTTGATAAAATGCTGCTTGCGTCTGGACAGGAGCTCAGGCCAGTaGTTGGCAAGAACTGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: TRSEFLTAWLIKCCLRLDRSSGQ*LARTAG Trigger: CCCTGCAGTTCTTGCCAAGCACTGGCCTGAGCTCCT...GTCCAGACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTCGGACCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217976.2 |
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| CDS-3UTR CCA 90 bp | ACACACACACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGACTCCAGGGTTTCCATTaGGATGCGGCTGCGCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTHTRKCPGEVCRLQGFH*DAAALE Trigger: CTCAAGCGCAGCCGCATCCCAATGGAAACCCTGGAG...TCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR TCA 90 bp | GGGAAGGGGTGGCATTCAAATTCTGAAAGCGTGGAAGATCTTATTAGCAGACAGCTCCGGGCCGCCTTCTaGGTTGTCCAGAGCCACCAT | + |
|
Preference number: 4 (lower is better) Translates to: GKGWHSNSESVEDLISRQLRAAF*VVQSHH Trigger: ATGGTGGCTCTGGACAACTCAGAAGGCGGCCCGGAG...CTGTCTGCTAATAAGATCTTCCACGCTTTCAGAATTTGAATGCCACCCCTTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR TCA 90 bp | TGCAGAGTCCTAGAGAGAGGACCAGCCACCCTCATCAGAGCTGAAACATGGAGGCAGCACTGGCTGAGATaGGATCCATGTATTGGCACA | + |
|
Preference number: 4 (lower is better) Translates to: CRVLERGPATLIRAETWRQHWLR*DPCIGT Trigger: TGTGCCAATACATGGATCTCATCTCAGCCAGTGCTG...CCTCCATGTTTCAGCTCTGATGAGGGTGGCTGGTCCTCTCTCTAGGACTCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045628.15 |
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| CDS-3UTR GCA 90 bp | AGGTCTCCCTACCCAAATACAAGTACCAGGGTGGGGAGCTACAAGGCCTCCCTGTGGTTGATAAAATGCTaGTTGCGTCTGGACGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: RSPYPNTSTRVGSYKASLWLIKC*LRLDAE Trigger: CTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCA...CAGGGAGGCCTTGTAGCTCCCCACCCTGGTACTTGTATTTGGGTAGGGAGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR GCA 90 bp | ACACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAGTCCTACCACATAGGTGGCATTaGTGCAGGCCTCTGCGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: THTHTHTRKCPGEVCRVLPHRWH*CRPLRR Trigger: TCTTCGCAGAGGCCTGCAGCAATGCCACCTATGTGG...TAGGACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | GGGAGCTACAAGGCCTCCCTGTGTGATCTGGGACATGAAGGGGCAAGGGCAAGGGAATTCCTCACAGCCTaGTTGATAAAATGCTGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: GSYKASLCDLGHEGARAREFLTA*LIKCCL Trigger: CAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTC...CCTTGCCCTTGCCCCTTCATGTCCCAGATCACACAGGGAGGCCTTGTAGCTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | GGCAAGGGCAAGGGGATTCCTGAAGGGAAGGGGTGGCATTCAAATTCTGAAAGCGGCAGGAAATCCAGGTaGCGGTTGCTGACTTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: GKGKGIPEGKGWHSNSESGRKSR*RLLTFI Trigger: GATGAAAGTCAGCAACCGCCACCTGGATTTCCTGCC...GCTTTCAGAATTTGAATGCCACCCCTTCCCTTCAGGAATCCCCTTGCCCTTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | TGTCCAGGTTCATGGCACATGGCGTGCATACATGTGCGCCACACACACACACACAGACAACAGAAGCTCTaGAGGCAGGAAATCCAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: CPGSWHMACIHVRHTHTHRQQKL*RQEIQV Trigger: CACCTGGATTTCCTGCCTCCAGAGCTTCTGTTGTCT...GTGTGTGTGTGTGTGGCGCACATGTATGCACGCCATGTGCCATGAACCTGGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | CATACATGTGCGCCACACACACACACACAGACAGACAGACAGACAGACAGACAGGGCAGGAAATCCAGGTaGCGGTTGCTGACTTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: HTCAPHTHTQTDRQTDRQGRKSR*RLLTFI Trigger: GATGAAAGTCAGCAACCGCCACCTGGATTTCCTGCC...CTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGTGTGTGTGTGGCGCACATGTATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR TCA 90 bp | ACACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAGTCCTACAGGTCAGCACTGGCTaGGATGAGATCCATGTATTG | + |
|
Preference number: 4 (lower is better) Translates to: THTHTHTRKCPGEVCRVLQVSTG*DEIHVL Trigger: CAATACATGGATCTCATCTCAGCCAGTGCTGACCTG...TAGGACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR GCA 90 bp | ACACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAGTCCTATGGTTGATAAAATGCTaGTTGCGTCTGGACGCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: THTHTHTRKCPGEVCRVLWLIKC*LRLDAE Trigger: CTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCA...TAGGACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | GGGAAGGGGTGGCATTCAAATTCTGAAAGCGTGGAAGATCTTATTAGCAGACAGAGACCTCCACATAGGTaGCATTGCTGCAGGCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: GKGWHSNSESVEDLISRQRPPHR*HCCRPL Trigger: CAGAGGCCTGCAGCAATGCCACCTATGTGGAGGTCT...CTGTCTGCTAATAAGATCTTCCACGCTTTCAGAATTTGAATGCCACCCCTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | AAAAAGGTAACAGTCTGCTACTCCTTGCCTGAGCTTCTGTCTCAAAGAAAGCTACTCCAGGGTTTCCATTaGGATGCGGCTGCGCTTGAG | + |
|
Preference number: 4 (lower is better) Translates to: KKVTVCYSLPELLSQRKLLQGFH*DAAALE Trigger: CTCAAGCGCAGCCGCATCCCAATGGAAACCCTGGAG...TAGCTTTCTTTGAGACAGAAGCTCAGGCAAGGAGTAGCAGACTGTTACCTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | AAAAAGGTAACAGTCTGCTACTCCTTGCCTGAGCTTCTGTCTCAAAGAAAGCTAAGACAACAGAAGCTCTaGAGGCAGGAAATCCAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: KKVTVCYSLPELLSQRKLRQQKL*RQEIQV Trigger: CACCTGGATTTCCTGCCTCCAGAGCTTCTGTTGTCT...TAGCTTTCTTTGAGACAGAAGCTCAGGCAAGGAGTAGCAGACTGTTACCTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CCA 90 bp | GTAACAGTCTGCTACTCCTTGCCTGAGCTTCTGTCTCAAAGAAAGCTAAACAGAGAATTCCTCACAGCCTaGTTGATAAAATGCTGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: VTVCYSLPELLSQRKLNREFLTA*LIKCCL Trigger: CAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTC...TCTGTTTAGCTTTCTTTGAGACAGAAGCTCAGGCAAGGAGTAGCAGACTGTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS GCA 90 bp | CTCCACATAGGTGGCATTGCTGCAGGCCTCTGCGAAGATGCCAGGTaGAGCAGGAGTCAGGTCCCCATCTTCCACCCCTGGAGGGCCCCC | + |
|
Preference number: 5 (lower is better) Translates to: LHIGGIAAGLCEDAR*SRSQVPIFHPWRAP Trigger: GGGGGCCCTCCAGGGGTGGAAGATGGGGACCTGACTCCTGCTGCACCTGGCATCTTCGCAGAGGCCTGCAGCAATGCCACCTATGTGGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 ENSMUST00000218750.2 ENSMUST00000218970.2 |
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| CDS CCA 90 bp | GAAGAACGCCAGCAGCCGTTCCTCCCAACTCTCCAGGGTTTCCATTaGGATGCGGCTGCGCTTGAGCACGGACCGCAGGCGACGGCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: EERQQPFLPTLQGFH*DAAALEHGPQATAD Trigger: ATCAGCCGTCGCCTGCGGTCCGTGCTCAAGCGCAGCCGCATCCCAATGGAAACCCTGGAGAGTTGGGAGGAACGGCTGCTGGCGTTCTTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CAA 90 bp | TGGCATAAGGAGAGGGGAGAAGGAGGAGGAGAGGACAGTCTGAAAGGCAGGCAGGGGATGCGGCTGCGCTaGAGCACGGACCGCAGGCGA | + |
|
Preference number: 5 (lower is better) Translates to: WHKERGEGGGEDSLKGRQGMRLR*STDRRR Trigger: TCGCCTGCGGTCCGTGCTCAAGCGCAGCCGCATCCC...CTGCCTGCCTTTCAGACTGTCCTCTCCTCCTCCTTCTCCCCTCTCCTTATGCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS GCA 90 bp | TCCAGACCTCCACATAGGTGGCATTGCTGCAGGCCTCTGCGAAGATaGCAGGTGCAGCAGGAGTCAGGTCCCCATCTTCCACCCCTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: SRPPHRWHCCRPLRR*QVQQESGPHLPPLE Trigger: CTCCAGGGGTGGAAGATGGGGACCTGACTCCTGCTGCACCTGGCATCTTCGCAGAGGCCTGCAGCAATGCCACCTATGTGGAGGTCTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 ENSMUST00000218750.2 ENSMUST00000218970.2 |
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| CDS GCA 90 bp | AGCTCTGGAGGCAGGAAATCCAGGTGGCGGTTGCTGACTTTCATCTaGCTCCGGCCCTCCAGGTCAGCACTGGCTGAGATGAGATCCATG | + |
|
Preference number: 5 (lower is better) Translates to: SSGGRKSRWRLLTFI*LRPSRSALAEMRSM Trigger: CATGGATCTCATCTCAGCCAGTGCTGACCTGGAGGGCCGGAGGCAGATGAAAGTCAGCAACCGCCACCTGGATTTCCTGCCTCCAGAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CAA 90 bp | ACACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAGTCCTAGGCCCACGTCTCCGCTaGCCCTGGCTCTCATCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: THTHTHTRKCPGEVCRVLGPRLR*PWLSSS Trigger: GGAGGATGAGAGCCAGGGCAAGCGGAGACGTGGGCC...TAGGACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS GCA 90 bp | CTGGGCACCAGGTCCGAATTCCTCACAGCCTGGTTGATAAAATGCTaGTTGCGTCTGGACGCTGAGACCCTCTTCACCTGTGAGCCGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LGTRSEFLTAWLIKC*LRLDAETLFTCEPL Trigger: CAGCGGCTCACAGGTGAAGAGGGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTCGGACCTGGTGCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS GCA 90 bp | GCTCTGGGCACCAGGTCCGAATTCCTCACAGCCTGGTTGATAAAATaGTGCTTGCGTCTGGACGCTGAGACCCTCTTCACCTGTGAGCCG | + |
|
Preference number: 5 (lower is better) Translates to: ALGTRSEFLTAWLIK*CLRLDAETLFTCEP Trigger: CGGCTCACAGGTGAAGAGGGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTCGGACCTGGTGCCCAGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 ENSMUST00000218750.2 |
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| CDS GCA 90 bp | CTGGGCACCAGGTCCGAATTCCTCACAGCCTGGTTGATAAAATGCTaGTTGCGTCTGGACGCTGAGACCCTCTTCACCTGTGAGCCGAGC | + |
|
Preference number: 5 (lower is better) Translates to: LGTRSEFLTAWLIKC*LRLDAETLFTCEPS Trigger: GCTCGGCTCACAGGTGAAGAGGGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTCGGACCTGGTGCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218750.2 |
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| CDS TCA 90 bp | GTTGCTGACTTTCATCTGCCTCCGGCCCTCCAGGTCAGCACTGGCTaGGATGAGATCCATGTATTGGCACACAGCATGAAGCAGGAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: VADFHLPPALQVSTG*DEIHVLAHSMKQEP Trigger: AGGCTCCTGCTTCATGCTGTGTGCCAATACATGGATCTCATCTCAGCCAGTGCTGACCTGGAGGGCCGGAGGCAGATGAAAGTCAGCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CAA 90 bp | AGCTACAAGGCCTCCCTGTGTGATCTGGGACATGAAGGGGCAAGGGCAAGGGGATTCCTCACAGCCTGGTaGATAAAATGCTGCTTGCGT | + |
|
Preference number: 5 (lower is better) Translates to: SYKASLCDLGHEGARARGFLTAW*IKCCLR Trigger: ACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAA...TCCCCTTGCCCTTGCCCCTTCATGTCCCAGATCACACAGGGAGGCCTTGTAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CAA 90 bp | AAAAAGGTAACAGTCTGCTACTCCTTGCCTGAGCTTCTGTCTCAAAGAAAGCTAGGGATGCGGCTGCGCTaGAGCACGGACCGCAGGCGA | + |
|
Preference number: 5 (lower is better) Translates to: KKVTVCYSLPELLSQRKLGMRLR*STDRRR Trigger: TCGCCTGCGGTCCGTGCTCAAGCGCAGCCGCATCCC...TAGCTTTCTTTGAGACAGAAGCTCAGGCAAGGAGTAGCAGACTGTTACCTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CAA 90 bp | ACACACACACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAAAATCCAGGTGGCGGTaGCTGACTTTCATCTGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: THTHTHTHTRKCPGEVCRKSRWR*LTFICL Trigger: GAGGCAGATGAAAGTCAGCAACCGCCACCTGGATTT...TCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CAA 90 bp | ACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAGTCCTAGAAAATCCAGGTGGCGGTaGCTGACTTTCATCTGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: THTHTHKKVSWGGLQSPRKSRWR*LTFICL Trigger: GAGGCAGATGAAAGTCAGCAACCGCCACCTGGATTT...TCTAGGACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CAA 90 bp | ACACACACACACACACACACACACAAGAAAGTGTCCTGGGGAGGTCTGCAGAGTTTCCTCACAGCCTGGTaGATAAAATGCTGCTTGCGT | + |
|
Preference number: 5 (lower is better) Translates to: THTHTHTHKKVSWGGLQSFLTAW*IKCCLR Trigger: ACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAA...ACTCTGCAGACCTCCCCAGGACACTTTCTTGTGTGTGTGTGTGTGTGTGTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CAA 90 bp | GGGAAGGGGTGGCATTCAAATTCTGAAAGCGTGGAAGATCTTATTAGCAGACAGTTGATAAAATGCTGCTaGCGTCTGGACGCTGAGACC | + |
|
Preference number: 5 (lower is better) Translates to: GKGWHSNSESVEDLISRQLIKCC*RLDAET Trigger: GGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAA...CTGTCTGCTAATAAGATCTTCCACGCTTTCAGAATTTGAATGCCACCCCTTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS-3UTR CAA 90 bp | AAAAAGGTAACAGTCTGCTACTCCTTGCCTGAGCTTCTGTCTCAAAGAAAGCTATTGATAAAATGCTGCTaGCGTCTGGACGCTGAGACC | + |
|
Preference number: 5 (lower is better) Translates to: KKVTVCYSLPELLSQRKLLIKCC*RLDAET Trigger: GGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAA...TAGCTTTCTTTGAGACAGAAGCTCAGGCAAGGAGTAGCAGACTGTTACCTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS CCA 72 bp | CAGCAGCCGTTCCTCCCAACTCTCCAGGGTTTCCATTaGGATGCGGCTGCGCTTGAGCACGGACCGCAGGCG | + |
|
Preference number: 6 (lower is better) Translates to: QQPFLPTLQGFH*DAAALEHGPQA Trigger: CGCCTGCGGTCCGTGCTCAAGCGCAGCCGCATCCCAATGGAAACCCTGGAGAGTTGGGAGGAACGGCTGCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS CAA 72 bp | CAACTCTCCAGGGTTTCCATTGGGATGCGGCTGCGCTaGAGCACGGACCGCAGGCGACGGCTGATGCGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: QLSRVSIGMRLR*STDRRRRLMRL Trigger: CAGGCGCATCAGCCGTCGCCTGCGGTCCGTGCTCAAGCGCAGCCGCATCCCAATGGAAACCCTGGAGAGTTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS CAA 90 bp | CGTTCCTCCCAACTCTCCAGGGTTTCCATTGGGATGCGGCTGCGCTaGAGCACGGACCGCAGGCGACGGCTGATGCGCCTGAAGCACTCG | + |
|
Preference number: 6 (lower is better) Translates to: RSSQLSRVSIGMRLR*STDRRRRLMRLKHS Trigger: CGAGTGCTTCAGGCGCATCAGCCGTCGCCTGCGGTCCGTGCTCAAGCGCAGCCGCATCCCAATGGAAACCCTGGAGAGTTGGGAGGAACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS GCA 72 bp | GGTGGCATTGCTGCAGGCCTCTGCGAAGATGCCAGGTaGAGCAGGAGTCAGGTCCCCATCTTCCACCCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: GGIAAGLCEDAR*SRSQVPIFHPW Trigger: CCAGGGGTGGAAGATGGGGACCTGACTCCTGCTGCACCTGGCATCTTCGCAGAGGCCTGCAGCAATGCCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 ENSMUST00000218750.2 ENSMUST00000218970.2 |
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| CDS TCA 72 bp | GAAGCTCTGGAGGCAGGAAATCCAGGTGGCGGTTGCTaGCTTTCATCTGCCTCCGGCCCTCCAGGTCAGCAC | + |
|
Preference number: 6 (lower is better) Translates to: EALEAGNPGGGC*LSSASGPPGQH Trigger: GTGCTGACCTGGAGGGCCGGAGGCAGATGAAAGTCAGCAACCGCCACCTGGATTTCCTGCCTCCAGAGCTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS GCA 72 bp | CCACATAGGTGGCATTGCTGCAGGCCTCTGCGAAGATaGCAGGTGCAGCAGGAGTCAGGTCCCCATCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: PHRWHCCRPLRR*QVQQESGPHLP Trigger: TGGAAGATGGGGACCTGACTCCTGCTGCACCTGGCATCTTCGCAGAGGCCTGCAGCAATGCCACCTATGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 ENSMUST00000218750.2 ENSMUST00000218970.2 |
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| CDS CAA 90 bp | GGCACCAGGTCCGAATTCCTCACAGCCTGGTTGATAAAATGCTGCTaGCGTCTGGACGCTGAGACCCTCTTCACCTGTGAGCCGAGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: GTRSEFLTAWLIKCC*RLDAETLFTCEPSL Trigger: CAGGCTCGGCTCACAGGTGAAGAGGGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTCGGACCTGGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218750.2 |
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| CDS CAA 90 bp | GGCACCAGGTCCGAATTCCTCACAGCCTGGTTGATAAAATGCTGCTaGCGTCTGGACGCTGAGACCCTCTTCACCTGTGAGCCGCTGAGT | + |
|
Preference number: 6 (lower is better) Translates to: GTRSEFLTAWLIKCC*RLDAETLFTCEPLS Trigger: ACTCAGCGGCTCACAGGTGAAGAGGGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTCGGACCTGGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS CAA 90 bp | CCGCTTGCCCTGGCTCTCATCCTCCAAGTAACGGAGCACTCGCTCTaGCTCCTCTCCCGAGCGGTTCATAAAATCATTCCAGACCTCCAC | + |
|
Preference number: 6 (lower is better) Translates to: PLALALILQVTEHSL*LLSRAVHKIIPDLH Trigger: GTGGAGGTCTGGAATGATTTTATGAACCGCTCGGGAGAGGAGCAAGAGCGAGTGCTCCGTTACTTGGAGGATGAGAGCCAGGGCAAGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS TCA 72 bp | TCTGCCTCCGGCCCTCCAGGTCAGCACTGGCTGAGATaGGATCCATGTATTGGCACACAGCATGAAGCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: SASGPPGQHWLR*DPCIGTQHEAG Trigger: TCCTGCTTCATGCTGTGTGCCAATACATGGATCTCATCTCAGCCAGTGCTGACCTGGAGGGCCGGAGGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
||
| CDS TCA 72 bp | TTTCATCTGCCTCCGGCCCTCCAGGTCAGCACTGGCTaGGATGAGATCCATGTATTGGCACACAGCATGAAG | + |
|
Preference number: 6 (lower is better) Translates to: FHLPPALQVSTG*DEIHVLAHSMK Trigger: CTTCATGCTGTGTGCCAATACATGGATCTCATCTCAGCCAGTGCTGACCTGGAGGGCCGGAGGCAGATGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
||
| CDS GCA 72 bp | ACCAGGTCCGAATTCCTCACAGCCTGGTTGATAAAATaGTGCTTGCGTCTGGACGCTGAGACCCTCTTCACC | + |
|
Preference number: 6 (lower is better) Translates to: TRSEFLTAWLIK*CLRLDAETLFT Trigger: GGTGAAGAGGGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTCGGACCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 ENSMUST00000218750.2 |
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| CDS CCA 72 bp | TCATTGCTGGTCCAGGTAGGCAGACAACAGAAGCTCTaGAGGCAGGAAATCCAGGTGGCGGTTGCTGACTTT | + |
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Preference number: 6 (lower is better) Translates to: SLLVQVGRQQKL*RQEIQVAVADF Trigger: AAAGTCAGCAACCGCCACCTGGATTTCCTGCCTCCAGAGCTTCTGTTGTCTGCCTACCTGGACCAGCAATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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| CDS GCA 72 bp | AGGTCCGAATTCCTCACAGCCTGGTTGATAAAATGCTaGTTGCGTCTGGACGCTGAGACCCTCTTCACCTGT | + |
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Preference number: 6 (lower is better) Translates to: RSEFLTAWLIKC*LRLDAETLFTC Trigger: ACAGGTGAAGAGGGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTCGGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 ENSMUST00000218750.2 |
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| CDS CAA 72 bp | TCCGAATTCCTCACAGCCTGGTTGATAAAATGCTGCTaGCGTCTGGACGCTGAGACCCTCTTCACCTGTGAG | + |
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Preference number: 6 (lower is better) Translates to: SEFLTAWLIKCC*RLDAETLFTCE Trigger: CTCACAGGTGAAGAGGGTCTCAGCGTCCAGACGCAAGCAGCATTTTATCAACCAGGCTGTGAGGAATTCGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 ENSMUST00000218750.2 |
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| CDS CAA 72 bp | CTGGCTCTCATCCTCCAAGTAACGGAGCACTCGCTCTaGCTCCTCTCCCGAGCGGTTCATAAAATCATTCCA | + |
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Preference number: 6 (lower is better) Translates to: LALILQVTEHSL*LLSRAVHKIIP Trigger: TGGAATGATTTTATGAACCGCTCGGGAGAGGAGCAAGAGCGAGTGCTCCGTTACTTGGAGGATGAGAGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045628.15 ENSMUST00000171416.2 |
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