Pregenerated sensors for QRSL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019863Ensembl transcript IDs: ENSMUST00000020012.7
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTATACAACATTACAATTTACAGCATCATAGGGATTTGAACAAATaGTTCCCAGGACAGACAGGGTTGACAGTGACCCTGATCACAGGG | + |
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Preference number: 1 (lower is better) Translates to: CIQHYNLQHHRDLNK*FPGQTGLTVTLITG Trigger: CCCTGTGATCAGGGTCACTGTCAACCCTGTCTGTCCTGGGAATCATTTGTTCAAATCCCTATGATGCTGTAAATTGTAATGTTGTATACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| 3UTR TCA 72 bp | AGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTaGGGCCAGCGTAAGATCCCAGCATCCTACCACCAG | + |
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Preference number: 3 (lower is better) Translates to: RGGDQSSGREQA*GQRKIPASYHQ Trigger: CTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| 3UTR TCA 72 bp | GACAGGGTTGACAGTGACCCTGATCACAGGGCTGAATaGGATCACCGACACTCAGAGAACAGCACTTCTAAG | + |
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Preference number: 3 (lower is better) Translates to: DRVDSDPDHRAE*DHRHSENSTSK Trigger: CTTAGAAGTGCTGTTCTCTGAGTGTCGGTGATCTCATTCAGCCCTGTGATCAGGGTCACTGTCAACCCTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| 3UTR CCA 72 bp | ACTTCTAAGGGGCATTTTAACTGCATGATACAGAGGTaGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: TSKGHFNCMIQR*GSVQWQRASLR Trigger: CCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAGTTAAAATGCCCCTTAGAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| 3UTR TCA 72 bp | CATTACAATTTACAGCATCATAGGGATTTGAACAAATaGTTCCCAGGACAGACAGGGTTGACAGTGACCCTG | + |
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Preference number: 3 (lower is better) Translates to: HYNLQHHRDLNK*FPGQTGLTVTL Trigger: CAGGGTCACTGTCAACCCTGTCTGTCCTGGGAATCATTTGTTCAAATCCCTATGATGCTGTAAATTGTAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR TCA 90 bp | CTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGGCCGGAACCGAGGCCGGCTaGGCAGGGTTTCTCACTGTG | + |
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Preference number: 4 (lower is better) Translates to: LHDTEVGISPVAESKPEAGTEAG*AGFLTV Trigger: CACAGTGAGAAACCCTGCTCAGCCGGCCTCGGTTCC...GGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR TCA 90 bp | GAGAGCAAGCCTGAGGCCAGCGTAAGATCCCAGCATCCTACCACCAGGCAACTGCCGAGCTTCCGCCAGTaGTCAGCCAGTGGGAATCAT | + |
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Preference number: 4 (lower is better) Translates to: ESKPEASVRSQHPTTRQLPSFRQ*SASGNH Trigger: ATGATTCCCACTGGCTGATCACTGGCGGAAGCTCGG...CAGTTGCCTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTCAGGCTTGCTCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR CCA 90 bp | GAGAGCAAGCCTGAGGCCAGCGTAAGATCCCAGCATCCTACCACCAGGCAACTGCCAACAATCCCACAGTaGGCAGCAGGGTTCCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: ESKPEASVRSQHPTTRQLPTIPQ*AAGFLV Trigger: CACCAGGAACCCTGCTGCCCACTGTGGGATTGTTGG...CAGTTGCCTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTCAGGCTTGCTCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR GCA 90 bp | GAGGCCAGCGTAAGATCCCAGCATCCTACCACCAGGCAACTGCACGAGATTCTGCTGGCCCTGCTTCAGTaGCGCAGAAACTTCTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: EASVRSQHPTTRQLHEILLALLQ*RRNFSE Trigger: CTCCGAGAAGTTTCTGCGGCACTGAAGCAGGGCCAG...CAGAATCTCGTGCAGTTGCCTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR GCA 90 bp | CTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGGCCGGTGTAACCTGGCCCTaGTTCAGTGCCGCAGAAACT | + |
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Preference number: 4 (lower is better) Translates to: LHDTEVGISPVAESKPEAGVTWP*FSAAET Trigger: AGTTTCTGCGGCACTGAAGCAGGGCCAGGTTACACC...GGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR GCA 90 bp | GAGAGCAAGCCTGAGGCCAGCGTAAGATCCCAGCATCCTACCACCAGGCAACTGGTGGGAATCATCACCTaGATCCTGCCGGCTTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: ESKPEASVRSQHPTTRQLVGIIT*ILPASL Trigger: GAGAGAAGCCGGCAGGATGCAGGTGATGATTCCCAC...CAGTTGCCTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTCAGGCTTGCTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR CCA 90 bp | GAGGCCAGCGTAAGATCCCAGCATCCTACCACCAGGCAACTGCACGAGATTCTGCCTCAGTCAGGGTGGTaGGGGTTAGCAGGACATCCA | + |
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Preference number: 4 (lower is better) Translates to: EASVRSQHPTTRQLHEILPQSGW*GLAGHP Trigger: TGGATGTCCTGCTAACCCCCACCACCCTGACTGAGG...CAGAATCTCGTGCAGTTGCCTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR CCA 90 bp | TGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGGCCATCTGTTGGTGTAACCTaGCCCTGCTTCAGTGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: CMIQRWGSVQWQRASLRPSVGVT*PCFSAA Trigger: TGCGGCACTGAAGCAGGGCCAGGTTACACCAACAGA...TGGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR TCA 90 bp | GAGAGCAAGCCTGAGGCCAGCGTAAGATCCCAGCATCCTACCACCAGGCAACTGTCAACACCAGACCTATaGCCATACTGGAGCCCATCA | + |
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Preference number: 4 (lower is better) Translates to: ESKPEASVRSQHPTTRQLSTPDL*PYWSPS Trigger: TGATGGGCTCCAGTATGGTCATAGGTCTGGTGTTGA...CAGTTGCCTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTCAGGCTTGCTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR TCA 90 bp | TTTAACTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGTGGCAGCCCTTGGTTTaGGAGGGCCACAGGGACACT | + |
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Preference number: 4 (lower is better) Translates to: FNCMIQRWGSVQWQRASLWQPLV*EGHRDT Trigger: AGTGTCCCTGTGGCCCTCTCAAACCAAGGGCTGCCA...CAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAGTTAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR GCA 90 bp | TGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGGCCATCATCACCTGCATCCTaGCGGCTTCTCTCTCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: CMIQRWGSVQWQRASLRPSSPAS*RLLSLY Trigger: GTACAGAGAGAGAAGCCGGCAGGATGCAGGTGATGA...TGGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR GCA 90 bp | GAGGCCAGCGTAAGATCCCAGCATCCTACCACCAGGCAACTGCACGAGATTCTGCACAGGGACACTCACTaGTGGCAAGCCTGCCATATT | + |
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Preference number: 4 (lower is better) Translates to: EASVRSQHPTTRQLHEILHRDTH*WQACHI Trigger: AATATGGCAGGCTTGCCAGCAGTGAGTGTCCCTGTG...CAGAATCTCGTGCAGTTGCCTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR GCA 90 bp | CTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGGCCGCACGTCCAATTAACTaGAGTCCTATTGGCAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: LHDTEVGISPVAESKPEAARPIN*SPIGSP Trigger: AGGGCTGCCAATAGGACTGCAGTTAATTGGACGTGC...GGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR TCA 90 bp | CTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGGCCATGGTAGCAGACAATTaGGTAACAGGTGTGTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LHDTEVGISPVAESKPEAMVADN*VTGVWQ Trigger: CTGCCACACACCTGTTACTCAATTGTCTGCTACCAT...GGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR GCA 90 bp | GAGGCCAGCGTAAGATCCCAGCATCCTACCACCAGGCAACTGCACGAGATTCTGCACTGCTGGCAAGCCTaGCATATTGACAGCTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: EASVRSQHPTTRQLHEILHCWQA*HIDSLS Trigger: ACTCAAGCTGTCAATATGGCAGGCTTGCCAGCAGTG...CAGAATCTCGTGCAGTTGCCTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR CCA 90 bp | GAGGCCAGCGTAAGATCCCAGCATCCTACCACCAGGCAACTGCACGAGATTCTGGGTTTCTCACTGTGGTaGAATCTTTGGGGTCATGTC | + |
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Preference number: 4 (lower is better) Translates to: EASVRSQHPTTRQLHEILGFSLW*NLWGHV Trigger: GACATGACCCCAAAGATTCCACCACAGTGAGAAACC...CAGAATCTCGTGCAGTTGCCTGGTGGTAGGATGCTGGGATCTTACGCTGGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR TCA 90 bp | CTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGGCCAAATCTCCAAGAGACTaGCCTTGCTTGTATCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LHDTEVGISPVAESKPEAKSPRD*PCLYLF Trigger: GAAAAGATACAAGCAAGGTCAGTCTCTTGGAGATTT...GGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR CCA 90 bp | TTTAACTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGCGTACATGGCTTCAGTaGACACATCAACACCAGACC | + |
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Preference number: 4 (lower is better) Translates to: FNCMIQRWGSVQWQRASLRTWLQ*THQHQT Trigger: GGTCTGGTGTTGATGTGTCCACTGAAGCCATGTACG...CAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAGTTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS TCA 90 bp | TCCTGGTGGACCCACCAGTGTCCGATCCGAGAGCCGCAAAGCAGGTaGACGCGGCCACGGCTGCTGCGCTGCCGCCCGAGCTTCCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SWWTHQCPIREPQSR*TRPRLLRCRPSFRQ Trigger: CTGGCGGAAGCTCGGGCGGCAGCGCAGCAGCCGTGGCCGCGTTCACCTGCTTTGCGGCTCTCGGATCGGACACTGGTGGGTCCACCAGGA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS CCA 90 bp | ACGGCTGCTGCGCTGCCGCCCGAGCTTCCGCCAGTGATCAGCCAGTaGGAATCATCACCTGCATCCTGCCGGCTTCTCTCTCTGTACTGC | + |
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Preference number: 5 (lower is better) Translates to: TAAALPPELPPVISQ*ESSPASCRLLSLYC Trigger: GCAGTACAGAGAGAGAAGCCGGCAGGATGCAGGTGATGATTCCCACTGGCTGATCACTGGCGGAAGCTCGGGCGGCAGCGCAGCAGCCGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS TCA 90 bp | ATACACAGCCTGCTCACATCCATCCCGCCGGGAACCGAGGCCGGCTaGGCAGGGTTTCTCACTGTGGTGGAATCTTTGGGGTCATGTCCA | + |
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Preference number: 5 (lower is better) Translates to: IHSLLTSIPPGTEAG*AGFLTVVESLGSCP Trigger: TGGACATGACCCCAAAGATTCCACCACAGTGAGAAACCCTGCTCAGCCGGCCTCGGTTCCCGGCGGGATGGATGTGAGCAGGCTGTGTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR CAA 90 bp | TTTAACTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGTTGGCAGCCCTTGGTTaGAGAGGGCCACAGGGACAC | + |
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Preference number: 5 (lower is better) Translates to: FNCMIQRWGSVQWQRASLLAALG*RGPQGH Trigger: GTGTCCCTGTGGCCCTCTCAAACCAAGGGCTGCCAA...CAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAGTTAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR CAA 90 bp | CTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGGCCCCAGTTGTGCTAAAGTaGTCTTTCACAGCAACAGGA | + |
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Preference number: 5 (lower is better) Translates to: LHDTEVGISPVAESKPEAPVVLK*SFTATG Trigger: TCCTGTTGCTGTGAAAGACAACTTTAGCACAACTGG...GGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR CAA 90 bp | TGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGAGGCCAAGATACTTGGTTTTCTaGATGAGGGAGAGACAGTTC | + |
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Preference number: 5 (lower is better) Translates to: CMIQRWGSVQWQRASLRPRYLVF*MRERQF Trigger: GAACTGTCTCTCCCTCATCAAGAAAACCAAGTATCT...TGGCCTCAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS-3UTR CAA 90 bp | TTTAACTGCATGATACAGAGGTGGGGATCAGTCCAGTGGCAGAGAGCAAGCCTGGAGACCGTACTTCACTaGACAATTCTGGTACTAGAT | + |
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Preference number: 5 (lower is better) Translates to: FNCMIQRWGSVQWQRASLETVLH*TILVLD Trigger: ATCTAGTACCAGAATTGTCAAGTGAAGTACGGTCTC...CAGGCTTGCTCTCTGCCACTGGACTGATCCCCACCTCTGTATCATGCAGTTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS TCA 72 bp | ACCCACCAGTGTCCGATCCGAGAGCCGCAAAGCAGGTaGACGCGGCCACGGCTGCTGCGCTGCCGCCCGAGC | + |
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Preference number: 6 (lower is better) Translates to: THQCPIREPQSR*TRPRLLRCRPS Trigger: GCTCGGGCGGCAGCGCAGCAGCCGTGGCCGCGTTCACCTGCTTTGCGGCTCTCGGATCGGACACTGGTGGGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS TCA 72 bp | CCACGGCTGCTGCGCTGCCGCCCGAGCTTCCGCCAGTaGTCAGCCAGTGGGAATCATCACCTGCATCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PRLLRCRPSFRQ*SASGNHHLHPA Trigger: GGCAGGATGCAGGTGATGATTCCCACTGGCTGATCACTGGCGGAAGCTCGGGCGGCAGCGCAGCAGCCGTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS TCA 72 bp | CTGCTCACATCCATCCCGCCGGGAACCGAGGCCGGCTaGGCAGGGTTTCTCACTGTGGTGGAATCTTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: LLTSIPPGTEAG*AGFLTVVESLG Trigger: CCCCAAAGATTCCACCACAGTGAGAAACCCTGCTCAGCCGGCCTCGGTTCCCGGCGGGATGGATGTGAGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS CCA 72 bp | AACCAACAATCCCACAGTGGGCAGCAGGGTTCCTGGTaGACCCACCAGTGTCCGATCCGAGAGCCGCAAAGC | + |
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Preference number: 6 (lower is better) Translates to: NQQSHSGQQGSW*THQCPIREPQS Trigger: GCTTTGCGGCTCTCGGATCGGACACTGGTGGGTCCACCAGGAACCCTGCTGCCCACTGTGGGATTGTTGGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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| CDS GCA 72 bp | GTACTAGATATTCCTTTGGGATTCCTATACACAGCCTaGTCACATCCATCCCGCCGGGAACCGAGGCCGGCT | + |
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Preference number: 6 (lower is better) Translates to: VLDIPLGFLYTA*SHPSRREPRPA Trigger: AGCCGGCCTCGGTTCCCGGCGGGATGGATGTGAGCAGGCTGTGTATAGGAATCCCAAAGGAATATCTAGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020012.7 |
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