Pregenerated sensors for QRFPRL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029917Ensembl transcript IDs: ENSMUST00000133352.8, ENSMUST00000136016.3, ENSMUST00000170608.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCTTCATCTTTTCCATGCATGCTTCGCTGACACACCTGAGGAGTTaGGGTTGTACTGAGGAGTTAGTAGCCTCAGTTGTTTGGTTCCCA | + |
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Preference number: 1 (lower is better) Translates to: IFIFSMHASLTHLRS*GCTEELVASVVWFP Trigger: TGGGAACCAAACAACTGAGGCTACTAACTCCTCAGTACAACCTCAACTCCTCAGGTGTGTCAGCGAAGCATGCATGGAAAAGATGAAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR TCA 90 bp | CTCAAAATCATTTTCTTTCGATTACAGTATGACAGATACTCATTCTaGAGACATTGGTACAGTGTTCACGTCTACAGCAGAGCTCTCAGA | + |
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Preference number: 1 (lower is better) Translates to: LKIIFFRLQYDRYSF*RHWYSVHVYSRALR Trigger: TCTGAGAGCTCTGCTGTAGACGTGAACACTGTACCAATGTCTTCAGAATGAGTATCTGTCATACTGTAATCGAAAGAAAATGATTTTGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR TCA 90 bp | GAAGAGGCTGGAGATATATATGAACAGGACAATGCTTCCGAATGCAAGACTGCTCATTTAGCTTCCTGGTaGCTTCATCAAGTAGAGCCG | + |
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Preference number: 2 (lower is better) Translates to: EEAGDIYEQDNASECKTAHLASW*LHQVEP Trigger: CGGCTCTACTTGATGAAGTCACCAGGAAGCTAAATG...AGCAGTCTTGCATTCGGAAGCATTGTCCTGTTCATATATATCTCCAGCCTCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR TCA 90 bp | GAAGAGGCTGGAGATATATATGAACAGGACAATGCTTCCGAATGCAAGACTGCTTTCTTTGCAAAAGAATaGGGCACAACTTCGGCAGTC | + |
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Preference number: 2 (lower is better) Translates to: EEAGDIYEQDNASECKTAFFAKE*GTTSAV Trigger: GACTGCCGAAGTTGTGCCTCATTCTTTTGCAAAGAA...AGCAGTCTTGCATTCGGAAGCATTGTCCTGTTCATATATATCTCCAGCCTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTTGCAAAAGAATGAGGCACAACTTCGGCAGTCACGTGTGATGCTCAACTATGACAGATACTCATTCTaGAGACATTGGTACAGTGTT | + |
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Preference number: 2 (lower is better) Translates to: SLQKNEAQLRQSRVMLNYDRYSF*RHWYSV Trigger: AACACTGTACCAATGTCTTCAGAATGAGTATCTGTC...ATAGTTGAGCATCACACGTGACTGCCGAAGTTGTGCCTCATTCTTTTGCAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR CAA 90 bp | GGTTATCCTCAAACTTATCGTGCAGCTAAGGATGACTTTAAACTCTaGAATCCCCTGTCCCTGCCTTCTGAGTGTTTGTCAACATTTTTA | + |
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Preference number: 2 (lower is better) Translates to: GYPQTYRAAKDDFKL*NPLSLPSECLSTFL Trigger: TAAAAATGTTGACAAACACTCAGAAGGCAGGGACAGGGGATTCAAGAGTTTAAAGTCATCCTTAGCTGCACGATAAGTTTGAGGATAACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTTACTGTCATCTTGGCATTTCCCCTCCTCTATTACCACACATTATTTCATCCCTGTCCCTGCCTTCTaGGTGTTTGTCAACATTTTT | + |
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Preference number: 2 (lower is better) Translates to: ILLSSWHFPSSITTHYFIPVPAF*VFVNIF Trigger: AAAAATGTTGACAAACACTCAGAAGGCAGGGACAGG...GATGAAATAATGTGTGGTAATAGAGGAGGGGAAATGCCAAGATGACAGTAAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTTACTGTCATCTTGGCATTTCCCCTCCTCTATTACCACACATTATTTCATCATGACTTTAAACTCTTaGATCCCCTGTCCCTGCCTT | + |
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Preference number: 2 (lower is better) Translates to: ILLSSWHFPSSITTHYFIMTLNS*IPCPCL Trigger: AAGGCAGGGACAGGGGATTCAAGAGTTTAAAGTCAT...GATGAAATAATGTGTGGTAATAGAGGAGGGGAAATGCCAAGATGACAGTAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTTACTGTCATCTTGGCATTTCCCCTCCTCTATTACCACACATTATTTCATCACGCAGATGTGTGTATaGGGAAAAAGTTGGACAGTG | + |
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Preference number: 2 (lower is better) Translates to: ILLSSWHFPSSITTHYFITQMCV*GKSWTV Trigger: CACTGTCCAACTTTTTCCTCATACACACATCTGCGT...GATGAAATAATGTGTGGTAATAGAGGAGGGGAAATGCCAAGATGACAGTAAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTTACTGTCATCTTGGCATTTCCCCTCCTCTATTACCACACATTATTTCATCCAGCCTGGGTGTTCTTaGCATTTTTGTTATCAGCTG | + |
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Preference number: 2 (lower is better) Translates to: ILLSSWHFPSSITTHYFIQPGCS*HFCYQL Trigger: CAGCTGATAACAAAAATGTCAAGAACACCCAGGCTG...GATGAAATAATGTGTGGTAATAGAGGAGGGGAAATGCCAAGATGACAGTAAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR TCA 90 bp | ATAATTTTACTGTCATCTTGGCATTTCCCCTCCTCTATTACCACACATTATTTCACACACCTGAGGAGTTaGGGTTGTACTGAGGAGTTA | + |
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Preference number: 2 (lower is better) Translates to: IILLSSWHFPSSITTHYFTHLRS*GCTEEL Trigger: TAACTCCTCAGTACAACCTCAACTCCTCAGGTGTGT...GAAATAATGTGTGGTAATAGAGGAGGGGAAATGCCAAGATGACAGTAAAATTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR TCA 72 bp | TTTTCCATGCATGCTTCGCTGACACACCTGAGGAGTTaGGGTTGTACTGAGGAGTTAGTAGCCTCAGTTGTT | + |
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Preference number: 3 (lower is better) Translates to: FSMHASLTHLRS*GCTEELVASVV Trigger: AACAACTGAGGCTACTAACTCCTCAGTACAACCTCAACTCCTCAGGTGTGTCAGCGAAGCATGCATGGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR CCA 72 bp | ATGGGTTTGAGGGAAGAAACCTGGGTAGTCATGGAATaGCAAAATTTCATGGTAGAGTTCAGTCCTCGTCAA | + |
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Preference number: 3 (lower is better) Translates to: MGLREETWVVME*QNFMVEFSPRQ Trigger: TTGACGAGGACTGAACTCTACCATGAAATTTTGCCATTCCATGACTACCCAGGTTTCTTCCCTCAAACCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR CAA 90 bp | ATGCAAGACTGCTCTAGACCGCAAAATGCTTTTCTACGTGTGTCTCATTTAGCTTGCTCCTCCACTTTTTaGGACTTTCTGACTTTGGTA | + |
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Preference number: 3 (lower is better) Translates to: MQDCSRPQNAFLRVSHLACSSTF*DFLTLV Trigger: TACCAAAGTCAGAAAGTCCAAAAAAGTGGAGGAGCA...AGCTAAATGAGACACACGTAGAAAAGCATTTTGCGGTCTAGAGCAGTCTTGCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR TCA 72 bp | AATGCTTTTCTACGTGTGTCTCATTTAGCTTCCTGGTaGCTTCATCAAGTAGAGCCGGTATCAACATCAGTT | + |
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Preference number: 3 (lower is better) Translates to: NAFLRVSHLASW*LHQVEPVSTSV Trigger: AACTGATGTTGATACCGGCTCTACTTGATGAAGTCACCAGGAAGCTAAATGAGACACACGTAGAAAAGCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR TCA 72 bp | AGCAGCCTGGGTGTTCTTGACATTTTTGTTATCAGCTaGAAACAATCAAGACTAGAAACTGGAGGCATCAGA | + |
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Preference number: 3 (lower is better) Translates to: SSLGVLDIFVIS*KQSRLETGGIR Trigger: TCTGATGCCTCCAGTTTCTAGTCTTGATTGTTTTCAGCTGATAACAAAAATGTCAAGAACACCCAGGCTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR-3UTR CAA 90 bp | TTAATGCTCAAACCACAAAGCAGCCTGGGTGTTCTTGACATTTTTGTTATCAGCGGAAATCATATCACATaGACCACACAGAAGAAAGTT | + |
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Preference number: 3 (lower is better) Translates to: LMLKPQSSLGVLDIFVISGNHIT*TTQKKV Trigger: AACTTTCTTCTGTGTGGTCAATGTGATATGATTTCC...GCTGATAACAAAAATGTCAAGAACACCCAGGCTGCTTTGTGGTTTGAGCATTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR TCA 72 bp | TCACAGTACGACCTAAACAATCCGTTCCCAAACACATaGTCCAGCCTCCCTCTTTTTGATTTGATAATTTTA | + |
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Preference number: 3 (lower is better) Translates to: SQYDLNNPFPNT*SSLPLFDLIIL Trigger: TAAAATTATCAAATCAAAAAGAGGGAGGCTGGATCATGTGTTTGGGAACGGATTGTTTAGGTCGTACTGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR TCA 72 bp | ATTTTCTTTCGATTACAGTATGACAGATACTCATTCTaGAGACATTGGTACAGTGTTCACGTCTACAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: IFFRLQYDRYSF*RHWYSVHVYSR Trigger: TCTGCTGTAGACGTGAACACTGTACCAATGTCTTCAGAATGAGTATCTGTCATACTGTAATCGAAAGAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR TCA 72 bp | ACCCTATTTATATTATATATCAACTCTGTCGATACATaGGGTCCCTCAAACTCTTCTCTAGTAAAGAACGCA | + |
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Preference number: 3 (lower is better) Translates to: TLFILYINSVDT*GPSNSSLVKNA Trigger: TGCGTTCTTTACTAGAGAAGAGTTTGAGGGACCTCATGTATCGACAGAGTTGATATATAATATAAATAGGGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR GCA 90 bp | GAAGAGGCTGGAGATATATATGAACAGGACAATGCTTCCGAATGCAAGACTGCTTCTGGTGCACGGGGCTaGTCCACTCTTCCAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: EEAGDIYEQDNASECKTASGARG*STLPGS Trigger: GCTGCCTGGAAGAGTGGAGCAGCCCCGTGCACCAGA...AGCAGTCTTGCATTCGGAAGCATTGTCCTGTTCATATATATCTCCAGCCTCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR TCA 90 bp | CTTTCTTTGCAAAAGAATGAGGCACAACTTCGGCAGTCACGTGTGATGCTCAACCGTTCTGGAGCATGGTaGCCGGGATGCAGAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: LSLQKNEAQLRQSRVMLNRSGAW*PGCRRR Trigger: TCTTCTTCTGCATCCCGGTCACCATGCTCCAGAACG...GTTGAGCATCACACGTGACTGCCGAAGTTGTGCCTCATTCTTTTGCAAAGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR GCA 90 bp | CTCAGAGCAGGGACAGAAGAGGCTGGAGATATATATGAACAGGACAATGCTTCCCTGTCACAATGGCAGTaGACTGGACAAATGGGACCA | + |
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Preference number: 4 (lower is better) Translates to: LRAGTEEAGDIYEQDNASLSQWQ*TGQMGP Trigger: TGGTCCCATTTGTCCAGTGCACTGCCATTGTGACAG...GGAAGCATTGTCCTGTTCATATATATCTCCAGCCTCTTCTGTCCCTGCTCTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR CCA 90 bp | CTTTCTTTGCAAAAGAATGAGGCACAACTTCGGCAGTCACGTGTGATGCTCAACGGATGGACAAGTCCCTaGTGCCTTTCCACAGCAATG | + |
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Preference number: 4 (lower is better) Translates to: LSLQKNEAQLRQSRVMLNGWTSP*CLSTAM Trigger: CATTGCTGTGGAAAGGCACCAGGGACTTGTCCATCC...GTTGAGCATCACACGTGACTGCCGAAGTTGTGCCTCATTCTTTTGCAAAGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR TCA 90 bp | CTTTCTTTGCAAAAGAATGAGGCACAACTTCGGCAGTCACGTGTGATGCTCAACCGACTGTCACCATCATaGTCACAGCTCGCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LSLQKNEAQLRQSRVMLNRLSPS*SQLASS Trigger: AGAAGAAGCGAGCTGTGATCATGATGGTGACAGTCG...GTTGAGCATCACACGTGACTGCCGAAGTTGTGCCTCATTCTTTTGCAAAGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR CCA 90 bp | TTAATGCTCAAACCACAAAGCAGCCTGGGTGTTCTTGACATTTTTGTTATCAGCGTGTCCGAGACGTTCTaGAGCATGGTGACCGGGATG | + |
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Preference number: 4 (lower is better) Translates to: LMLKPQSSLGVLDIFVISVSETF*SMVTGM Trigger: CATCCCGGTCACCATGCTCCAGAACGTCTCGGACAC...GCTGATAACAAAAATGTCAAGAACACCCAGGCTGCTTTGTGGTTTGAGCATTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR GCA 90 bp | TCTTTGCAAAAGAATGAGGCACAACTTCGGCAGTCACGTGTGATGCTCAACTATTCAAGTCGCTGCACATaGCACATGGGTGATCCTATG | + |
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Preference number: 4 (lower is better) Translates to: SLQKNEAQLRQSRVMLNYSSRCT*HMGDPM Trigger: CATAGGATCACCCATGTGGCATGTGCAGCGACTTGA...ATAGTTGAGCATCACACGTGACTGCCGAAGTTGTGCCTCATTCTTTTGCAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR GCA 90 bp | TACTGTCATCTTGGCATTTCCCCTCCTCTATTACCACACATTATTTCATCTTCATGCGCATGGCCTTGCTaGGGGTCACCACATAGACTA | + |
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Preference number: 4 (lower is better) Translates to: YCHLGISPPLLPHIISSSCAWPC*GSPHRL Trigger: TAGTCTATGTGGTGACCCGCAGCAAGGCCATGCGCA...TGAAGATGAAATAATGTGTGGTAATAGAGGAGGGGAAATGCCAAGATGACAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR TCA 90 bp | TCTTTGCAAAAGAATGAGGCACAACTTCGGCAGTCACGTGTGATGCTCAACTATATTGTGAAAGCTCTTTaGTTGGTGTACTGCCGCTTC | + |
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Preference number: 4 (lower is better) Translates to: SLQKNEAQLRQSRVMLNYIVKAL*LVYCRF Trigger: GAAGCGGCAGTACACCAATCAAAGAGCTTTCACAAT...ATAGTTGAGCATCACACGTGACTGCCGAAGTTGTGCCTCATTCTTTTGCAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR GCA 90 bp | AGTATGACAGATACTCATTCTGAAGACATTGGTACAGTGTTCACGTCTACAGCAGCTCCTGAACTTCCATaGTTCCGTGCTGAAGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: SMTDTHSEDIGTVFTSTAAPELP*FRAEEG Trigger: ACCTTCTTCAGCACGGAAGCATGGAAGTTCAGGAGC...TGCTGTAGACGTGAACACTGTACCAATGTCTTCAGAATGAGTATCTGTCATACT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR CCA 90 bp | CTCAGAGCAGGGACAGAAGAGGCTGGAGATATATATGAACAGGACAATGCTTCCAGTGCACTGGACAAATaGGACCATTTTGCAAATGAA | + |
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Preference number: 4 (lower is better) Translates to: LRAGTEEAGDIYEQDNASSALDK*DHFANE Trigger: TTCATTTGCAAAATGGTCCCATTTGTCCAGTGCACT...GGAAGCATTGTCCTGTTCATATATATCTCCAGCCTCTTCTGTCCCTGCTCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR CAA 72 bp | CAAACTTATCGTGCAGCTAAGGATGACTTTAAACTCTaGAATCCCCTGTCCCTGCCTTCTGAGTGTTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: QTYRAAKDDFKL*NPLSLPSECLS Trigger: TGACAAACACTCAGAAGGCAGGGACAGGGGATTCAAGAGTTTAAAGTCATCCTTAGCTGCACGATAAGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR TCA 90 bp | ATGCAAGACTGCTCTAGACCGCAAAATGCTTTTCTACGTGTGTCTCATTTAGCTCCACACCTAGCATTGTaGAAGCTCTTTGATTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: MQDCSRPQNAFLRVSHLAPHLAL*KLFDWC Trigger: ACACCAATCAAAGAGCTTTCACAATGCTAGGTGTGG...AGCTAAATGAGACACACGTAGAAAAGCATTTTGCGGTCTAGAGCAGTCTTGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR GCA 90 bp | ATAATTTTACTGTCATCTTGGCATTTCCCCTCCTCTATTACCACACATTATTTCGAGCAGGTCGCTGAGTaGCAGGGAGCAGATGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: IILLSSWHFPSSITTHYFEQVAE*QGADED Trigger: ATCTTCATCTGCTCCCTGGCACTCAGCGACCTGCTC...GAAATAATGTGTGGTAATAGAGGAGGGGAAATGCCAAGATGACAGTAAAATTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR CCA 90 bp | TCTTTGCAAAAGAATGAGGCACAACTTCGGCAGTCACGTGTGATGCTCAACTATCCTCTTCTTCTTTTCTaGCTGTTCACACCACTTGAT | + |
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Preference number: 4 (lower is better) Translates to: SLQKNEAQLRQSRVMLNYPLLLF*LFTPLD Trigger: ATCAAGTGGTGTGAACAGCCAGAAAAGAAGAAGAGG...ATAGTTGAGCATCACACGTGACTGCCGAAGTTGTGCCTCATTCTTTTGCAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| 3UTR CAA 72 bp | CTAGTAAAGAACGCAGATGTGTGTATGAGGAAAAAGTaGGACAGTGTCAAGAATAAACTCAGAGCAGGGACA | + |
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Preference number: 4 (lower is better) Translates to: LVKNADVCMRKK*DSVKNKLRAGT Trigger: TGTCCCTGCTCTGAGTTTATTCTTGACACTGTCCAACTTTTTCCTCATACACACATCTGCGTTCTTTACTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR CCA 90 bp | TACTGTCATCTTGGCATTTCCCCTCCTCTATTACCACACATTATTTCATCTTCAGGATTTCTGTCACAATaGCAGTGCACTGGACAAATG | + |
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Preference number: 4 (lower is better) Translates to: YCHLGISPPLLPHIISSSGFLSQ*QCTGQM Trigger: CATTTGTCCAGTGCACTGCCATTGTGACAGAAATCC...TGAAGATGAAATAATGTGTGGTAATAGAGGAGGGGAAATGCCAAGATGACAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR CCA 90 bp | ATGCAAGACTGCTCTAGACCGCAAAATGCTTTTCTACGTGTGTCTCATTTAGCTTTCATTTTAAAAGGATaGACAAGTCCCTGGTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: MQDCSRPQNAFLRVSHLAFILKG*TSPWCL Trigger: AAGGCACCAGGGACTTGTCCATCCTTTTAAAATGAA...AGCTAAATGAGACACACGTAGAAAAGCATTTTGCGGTCTAGAGCAGTCTTGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR TCA 90 bp | TTAATGCTCAAACCACAAAGCAGCCTGGGTGTTCTTGACATTTTTGTTATCAGCAACATTTCTTTTCCATaGATAGTTCGGAGCACTGAG | + |
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Preference number: 4 (lower is better) Translates to: LMLKPQSSLGVLDIFVISNISFP*IVRSTE Trigger: CTCAGTGCTCCGAACTATTCATGGAAAAGAAATGTT...GCTGATAACAAAAATGTCAAGAACACCCAGGCTGCTTTGTGGTTTGAGCATTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR TCA 90 bp | TTAATGCTCAAACCACAAAGCAGCCTGGGTGTTCTTGACATTTTTGTTATCAGCACAAGATGCCACTTTTaGTCTCCTCTTCTTCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LMLKPQSSLGVLDIFVISTRCHF*SPLLLF Trigger: GAAAAGAAGAAGAGGAGATCAAAAGTGGCATCTTGT...GCTGATAACAAAAATGTCAAGAACACCCAGGCTGCTTTGTGGTTTGAGCATTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR TCA 90 bp | ATTTTACTGTCATCTTGGCATTTCCCCTCCTCTATTACCACACATTATTTCATCTATTCAATCATCATGTaGACGATGTGGAAAGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: ILLSSWHFPSSITTHYFIYSIIM*TMWKGA Trigger: GGCACCTTTCCACATCGTTCACATGATGATTGAATA...GATGAAATAATGTGTGGTAATAGAGGAGGGGAAATGCCAAGATGACAGTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS CCA 90 bp | GAGGGCCAGCCTGGCGCGCGCGGGAAGCTGCGGGGTGAGCACCAGTaGCCGCAGCCCATAGTGCGCGATGAACTGAGCGCGCGTCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: EGQPGARGKLRGEHQ*PQPIVRDELSARQV Trigger: AACCTGACGCGCGCTCAGTTCATCGCGCACTATGGGCTGCGGCCACTGGTGCTCACCCCGCAGCTTCCCGCGCGCGCCAGGCTGGCCCTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000133352.8 ENSMUST00000170608.8 |
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| CDS TCA 90 bp | CCACATAGACTACCAGGGCGTTGCCGAAGAGCGCCAGGGCAAAGATaGGCATGCCGACCAGCAGGAGGGCCAGCCTGGCGCGCGCGGGAA | + |
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Preference number: 5 (lower is better) Translates to: PHRLPGRCRRAPGQR*ACRPAGGPAWRARE Trigger: TTCCCGCGCGCGCCAGGCTGGCCCTCCTGCTGGTCGGCATGCTCATCTTTGCCCTGGCGCTCTTCGGCAACGCCCTGGTAGTCTATGTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133352.8 ENSMUST00000170608.8 |
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| CDS GCA 90 bp | TTGATCTCTACAGGATTCTCTCTTGCAGCTAACTTTGCCCTCCTGTaGATCACCATAGCTCCTGAACTTCCATGCTTCCGTGCTGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: LISTGFSLAANFALL*ITIAPELPCFRAEE Trigger: TTCTTCAGCACGGAAGCATGGAAGTTCAGGAGCTATGGTGATGCACAGGAGGGCAAAGTTAGCTGCAAGAGAGAATCCTGTAGAGATCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR CAA 90 bp | CTCAGAGCAGGGACAGAAGAGGCTGGAGATATATATGAACAGGACAATGCTTCCCATTGTGAAAGCTCTTaGATTGGTGTACTGCCGCTT | + |
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Preference number: 5 (lower is better) Translates to: LRAGTEEAGDIYEQDNASHCESS*IGVLPL Trigger: AAGCGGCAGTACACCAATCAAAGAGCTTTCACAATG...GGAAGCATTGTCCTGTTCATATATATCTCCAGCCTCTTCTGTCCCTGCTCTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR CAA 90 bp | GAAGAGGCTGGAGATATATATGAACAGGACAATGCTTCCGAATGCAAGACTGCTCTACAGGATTCTCTCTaGCAGCTAACTTTGCCCTCC | + |
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Preference number: 5 (lower is better) Translates to: EEAGDIYEQDNASECKTALQDSL*QLTLPS Trigger: GGAGGGCAAAGTTAGCTGCAAGAGAGAATCCTGTAG...AGCAGTCTTGCATTCGGAAGCATTGTCCTGTTCATATATATCTCCAGCCTCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS-3UTR CAA 90 bp | CAGATACTCATTCTGAAGACATTGGTACAGTGTTCACGTCTACAGCAGAGCTCTCCAAATGCTTCTCCTTaGATCTCTACAGGATTCTCT | + |
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Preference number: 5 (lower is better) Translates to: QILILKTLVQCSRLQQSSPNASP*ISTGFS Trigger: AGAGAATCCTGTAGAGATCAAAGGAGAAGCATTTGG...AGAGCTCTGCTGTAGACGTGAACACTGTACCAATGTCTTCAGAATGAGTATCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS TCA 72 bp | CTACCAGGGCGTTGCCGAAGAGCGCCAGGGCAAAGATaGGCATGCCGACCAGCAGGAGGGCCAGCCTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: LPGRCRRAPGQR*ACRPAGGPAWR Trigger: GCGCCAGGCTGGCCCTCCTGCTGGTCGGCATGCTCATCTTTGCCCTGGCGCTCTTCGGCAACGCCCTGGTAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133352.8 ENSMUST00000170608.8 |
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| CDS GCA 72 bp | GCCCTCCTGTGCATCACCATAGCTCCTGAACTTCCATaGTTCCGTGCTGAAGAAGGTGTTTCCTTCACAATG | + |
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Preference number: 6 (lower is better) Translates to: ALLCITIAPELP*FRAEEGVSFTM Trigger: CATTGTGAAGGAAACACCTTCTTCAGCACGGAAGCATGGAAGTTCAGGAGCTATGGTGATGCACAGGAGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS CAA 90 bp | TCACACCACTTGATATCGATGTTGCTGCCCCCAAATGCTTCTCCTTaGATCTCTACAGGATTCTCTCTTGCAGCTAACTTTGCCCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SHHLISMLLPPNASP*ISTGFSLAANFALL Trigger: CAGGAGGGCAAAGTTAGCTGCAAGAGAGAATCCTGTAGAGATCAAAGGAGAAGCATTTGGGGGCAGCAACATCGATATCAAGTGGTGTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS GCA 72 bp | TATAGGAAGTCATACTTAATCTCAAGTCGCTGCACATaGCACATGGGTGATCCTATGATGATGGCCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: YRKSYLISSRCT*HMGDPMMMATS Trigger: GCTGGTGGCCATCATCATAGGATCACCCATGTGGCATGTGCAGCGACTTGAGATTAAGTATGACTTCCTATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000133352.8 ENSMUST00000136016.3 ENSMUST00000170608.8 |
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| CDS TCA 72 bp | ACCAGCCACACCACACCTAGCATTGTGAAAGCTCTTTaGTTGGTGTACTGCCGCTTCATTTTAAAAGGATGG | + |
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Preference number: 6 (lower is better) Translates to: TSHTTPSIVKAL*LVYCRFILKGW Trigger: CCATCCTTTTAAAATGAAGCGGCAGTACACCAATCAAAGAGCTTTCACAATGCTAGGTGTGGTGTGGCTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS GCA 72 bp | TTCACACCACTTGATATCGATGTTGCTGCCCCCAAATaGTTCTCCTTTGATCTCTACAGGATTCTCTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: FTPLDIDVAAPK*FSFDLYRILSC Trigger: GCAAGAGAGAATCCTGTAGAGATCAAAGGAGAAGCATTTGGGGGCAGCAACATCGATATCAAGTGGTGTGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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| CDS CAA 72 bp | TTGATATCGATGTTGCTGCCCCCAAATGCTTCTCCTTaGATCTCTACAGGATTCTCTCTTGCAGCTAACTTT | + |
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Preference number: 6 (lower is better) Translates to: LISMLLPPNASP*ISTGFSLAANF Trigger: AAAGTTAGCTGCAAGAGAGAATCCTGTAGAGATCAAAGGAGAAGCATTTGGGGGCAGCAACATCGATATCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170608.8 |
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