Pregenerated sensors for QRFP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043102Ensembl transcript IDs: ENSMUST00000057407.3
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAATGCGCTGCCACTGGGGACCGGGGACTGCTCCAGTCAGACCACTaGGGAAAGTCGGAGGCTGAGACAGACAGCAGCCCGAGTCATGGG | + |
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Preference number: 1 (lower is better) Translates to: QCAATGDRGLLQSDH*GKSEAETDSSPSHG Trigger: CCCATGACTCGGGCTGCTGTCTGTCTCAGCCTCCGACTTTCCCCAGTGGTCTGACTGGAGCAGTCCCCGGTCCCCAGTGGCAGCGCATTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR CCA 90 bp | GACAAGGGGCGATGGGCAGCCAGAGGGGATGCACAGGCCATTCAGTaGGCAGCTTGGTGCCACTGCTGGCTTTCTTGCCAGAGGCGTCTT | + |
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Preference number: 1 (lower is better) Translates to: DKGRWAARGDAQAIQ*AAWCHCWLSCQRRL Trigger: AAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGCTGCCCATCGCCCCTTGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR TCA 90 bp | GGACGGCAGAGTGATGTGCCTTACAGTGTGCTTGTCTTGTCCCTGTaGCTGCAGCCCAGGACCCATGTGCAAGGCCCCTGGGGAGCCCAA | + |
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Preference number: 1 (lower is better) Translates to: GRQSDVPYSVLVLSL*LQPRTHVQGPWGAQ Trigger: TTGGGCTCCCCAGGGGCCTTGCACATGGGTCCTGGGCTGCAGTCACAGGGACAAGACAAGCACACTGTAAGGCACATCACTCTGCCGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR GCA 90 bp | GGCAGAGTGATGTGCCTTACAGTGTGCTTGTCTTGTCCCTGTGACTaGAGCCCAGGACCCATGTGCAAGGCCCCTGGGGAGCCCAAGGTG | + |
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Preference number: 1 (lower is better) Translates to: GRVMCLTVCLSCPCD*SPGPMCKAPGEPKV Trigger: CACCTTGGGCTCCCCAGGGGCCTTGCACATGGGTCCTGGGCTGCAGTCACAGGGACAAGACAAGCACACTGTAAGGCACATCACTCTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR CCA 90 bp | ATGAATGAGCCAGGGTACTGCCCCACAGAAGCAGGTGGGCATCCCTaGCTGGTGAGGGAGCTGGGGAAACCACAGCCACCTCTCTGTGTC | + |
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Preference number: 1 (lower is better) Translates to: MNEPGYCPTEAGGHP*LVRELGKPQPPLCV Trigger: GACACAGAGAGGTGGCTGTGGTTTCCCCAGCTCCCTCACCAGCCAGGGATGCCCACCTGCTTCTGTGGGGCAGTACCCTGGCTCATTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR GCA 90 bp | TGGGCAGCCAGAGGGGATGCACAGGCCATTCAGTGGGCAGCTTGGTaGCACTGCTGGCTTTCTTGCCAGAGGCGTCTTGTGCTAATGGGA | + |
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Preference number: 1 (lower is better) Translates to: WAARGDAQAIQWAAW*HCWLSCQRRLVLMG Trigger: TCCCATTAGCACAAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGCTGCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR CCA 90 bp | CGATGGGCAGCCAGAGGGGATGCACAGGCCATTCAGTGGGCAGCTTaGTGCCACTGCTGGCTTTCTTGCCAGAGGCGTCTTGTGCTAATG | + |
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Preference number: 1 (lower is better) Translates to: RWAARGDAQAIQWAA*CHCWLSCQRRLVLM Trigger: CATTAGCACAAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGCTGCCCATCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR TCA 90 bp | GTGAGGGAGCTGGGGAAACCACAGCCACCTCTCTGTGTCCACAGATaGCCTGTGTTCTCAGGACTGTCCCAAAGGAGTGTGGTGGTGCCC | + |
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Preference number: 1 (lower is better) Translates to: VRELGKPQPPLCVHR*PVFSGLSQRSVVVP Trigger: GGGCACCACCACACTCCTTTGGGACAGTCCTGAGAACACAGGTCATCTGTGGACACAGAGAGGTGGCTGTGGTTTCCCCAGCTCCCTCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR GCA 90 bp | GCCAGAGGGGATGCACAGGCCATTCAGTGGGCAGCTTGGTGCCACTaGTGGCTTTCTTGCCAGAGGCGTCTTGTGCTAATGGGATGGAGA | + |
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Preference number: 1 (lower is better) Translates to: ARGDAQAIQWAAWCH*WLSCQRRLVLMGWR Trigger: TCTCCATCCCATTAGCACAAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR GCA 90 bp | CAGCCTGTTCCTTCTCTCCCTTCGCCCAGTTGCCAATTAAGGGGCTaGTCGGAGAGGTGTACGGGGTACAGGCAGCCTGATTTCCATCTC | + |
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Preference number: 1 (lower is better) Translates to: QPVPSLPSPSCQLRG*SERCTGYRQPDFHL Trigger: GAGATGGAAATCAGGCTGCCTGTACCCCGTACACCTCTCCGAGCAGCCCCTTAATTGGCAACTGGGCGAAGGGAGAGAAGGAACAGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR CCA 90 bp | CATGAGGCCCTTAAGTTGGCTAATACTACCATGGACAAGGGGCGATaGGCAGCCAGAGGGGATGCACAGGCCATTCAGTGGGCAGCTTGG | + |
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Preference number: 1 (lower is better) Translates to: HEALKLANTTMDKGR*AARGDAQAIQWAAW Trigger: CCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGCTGCCCATCGCCCCTTGTCCATGGTAGTATTAGCCAACTTAAGGGCCTCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR CCA 90 bp | AGAGGGGATGCACAGGCCATTCAGTGGGCAGCTTGGTGCCACTGCTaGCTTTCTTGCCAGAGGCGTCTTGTGCTAATGGGATGGAGAACA | + |
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Preference number: 1 (lower is better) Translates to: RGDAQAIQWAAWCHC*LSCQRRLVLMGWRT Trigger: TGTTCTCCATCCCATTAGCACAAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR TCA 90 bp | CTGGCTTGTGGTCTTCTGTCTCAGCCTGTCTCATATGTGTATGAATaGGCCAGGGTACTGCCCCACAGAAGCAGGTGGGCATCCCTGGCT | + |
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Preference number: 1 (lower is better) Translates to: LACGLLSQPVSYVYE*ARVLPHRSRWASLA Trigger: AGCCAGGGATGCCCACCTGCTTCTGTGGGGCAGTACCCTGGCTCATTCATACACATATGAGACAGGCTGAGACAGAAGACCACAAGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR TCA 90 bp | AGCCCTGGCTTGTGGTCTTCTGTCTCAGCCTGTCTCATATGTGTATaGATGAGCCAGGGTACTGCCCCACAGAAGCAGGTGGGCATCCCT | + |
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Preference number: 1 (lower is better) Translates to: SPGLWSSVSACLICV*MSQGTAPQKQVGIP Trigger: AGGGATGCCCACCTGCTTCTGTGGGGCAGTACCCTGGCTCATTCATACACATATGAGACAGGCTGAGACAGAAGACCACAAGCCAGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR GCA 90 bp | TGTGAACGGGGGCAAGCCGCTACTCGCAAGGAGGAGGGGAGATGTTaGCATAGAAACATCAATATAAGTTCTCATCTCAGCAGTCACAGC | + |
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Preference number: 1 (lower is better) Translates to: CERGQAATRKEEGRC*HRNINISSHLSSHS Trigger: GCTGTGACTGCTGAGATGAGAACTTATATTGATGTTTCTATGGCAACATCTCCCCTCCTCCTTGCGAGTAGCGGCTTGCCCCCGTTCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR CCA 90 bp | AGAAACATCAATATAAGTTCTCATCTCAGCAGTCACAGCCAGCCCTaGAGTGAGCTGCTTCTGACGGCTGTGTGTGACCCAGGATGGGAT | + |
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Preference number: 1 (lower is better) Translates to: RNINISSHLSSHSQP*SELLLTAVCDPGWD Trigger: ATCCCATCCTGGGTCACACACAGCCGTCAGAAGCAGCTCACTCCAGGGCTGGCTGTGACTGCTGAGATGAGAACTTATATTGATGTTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR TCA 90 bp | TTCAGATGTCAGCTACCAGTGTCCCTTCGGAGACTGTCAGAACTTTaGTTTCCAGCTGTAATCTCTCAGTCCACCTACCGACAAATGAAC | + |
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Preference number: 1 (lower is better) Translates to: FRCQLPVSLRRLSEL*FPAVISQSTYRQMN Trigger: GTTCATTTGTCGGTAGGTGGACTGAGAGATTACAGCTGGAAATCAAAGTTCTGACAGTCTCCGAAGGGACACTGGTAGCTGACATCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | TCCCAAAGGAGTGTGGTGGTGCCCATGATGTCCACACTAGAGGAGAGCAGTAGCCCGGGTCTGGGTTCCTaGGGTTGGGGCCGGGGCAAC | + |
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Preference number: 2 (lower is better) Translates to: SQRSVVVPMMSTLEESSSPGLGS*GWGRGN Trigger: GTTGCCCCGGCCCCAACCTCAGGAACCCAGACCCGG...GCTACTGCTCTCCTCTAGTGTGGACATCATGGGCACCACCACACTCCTTTGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CCA 90 bp | GCCCAGGCTCCAGGGTGCCCTTCAGCCCTGGCTTGTGGTCTTCTGTCTCAGCCTGCTTGGTGCCACTGCTaGCTTTCTTGCCAGAGGCGT | + |
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Preference number: 2 (lower is better) Translates to: AQAPGCPSALACGLLSQPAWCHC*LSCQRR Trigger: ACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGC...AGGCTGAGACAGAAGACCACAAGCCAGGGCTGAAGGGCACCCTGGAGCCTGGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR GCA 90 bp | CAAGGGGCGATGGGCAGCCAGAGGGGATGCACAGGCCATTCAGTGGGCAGCTTGCTTGGTCCTCCTGTGTaGAGGGTTTCAGGAGTAGGG | + |
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Preference number: 2 (lower is better) Translates to: QGAMGSQRGCTGHSVGSLLGPPV*RVSGVG Trigger: CCCTACTCCTGAAACCCTGCACACAGGAGGACCAAG...CAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGCTGCCCATCGCCCCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR CAA 90 bp | GCGATGGGCAGCCAGAGGGGATGCACAGGCCATTCAGTGGGCAGCTaGGTGCCACTGCTGGCTTTCTTGCCAGAGGCGTCTTGTGCTAAT | + |
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Preference number: 2 (lower is better) Translates to: AMGSQRGCTGHSVGS*VPLLAFLPEASCAN Trigger: ATTAGCACAAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGCTGCCCATCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | GAACGGGGGCAAGCCGCTACTCGCAAGGAGGAGGGGAGATGTTGCCATAGAAACGGAGTGAGCTGCTTCTaGCGGCTGTGTGTGACCCAG | + |
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Preference number: 2 (lower is better) Translates to: ERGQAATRKEEGRCCHRNGVSCF*RLCVTQ Trigger: CTGGGTCACACACAGCCGTCAGAAGCAGCTCACTCC...GTTTCTATGGCAACATCTCCCCTCCTCCTTGCGAGTAGCGGCTTGCCCCCGTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR GCA 90 bp | GCTCCAGGGTGCCCTTCAGCCCTGGCTTGTGGTCTTCTGTCTCAGCCTGTCTCATCTTGTCCCTGTGACTaGAGCCCAGGACCCATGTGC | + |
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Preference number: 2 (lower is better) Translates to: APGCPSALACGLLSQPVSSCPCD*SPGPMC Trigger: GCACATGGGTCCTGGGCTGCAGTCACAGGGACAAGA...TGAGACAGGCTGAGACAGAAGACCACAAGCCAGGGCTGAAGGGCACCCTGGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CCA 90 bp | GCTCCAGGGTGCCCTTCAGCCCTGGCTTGTGGTCTTCTGTCTCAGCCTGTCTCATCAGGTGTTTGGCTCTaGCCCCCTCCTCAGTTCACC | + |
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Preference number: 2 (lower is better) Translates to: APGCPSALACGLLSQPVSSGVWL*PPPQFT Trigger: GGTGAACTGAGGAGGGGGCCAGAGCCAAACACCTGA...TGAGACAGGCTGAGACAGAAGACCACAAGCCAGGGCTGAAGGGCACCCTGGAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CCA 90 bp | GCTCCAGGGTGCCCTTCAGCCCTGGCTTGTGGTCTTCTGTCTCAGCCTGTCTCAACTGTGTCAGGTGTTTaGCTCTGGCCCCCTCCTCAG | + |
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Preference number: 2 (lower is better) Translates to: APGCPSALACGLLSQPVSTVSGV*LWPPPQ Trigger: CTGAGGAGGGGGCCAGAGCCAAACACCTGACACAGT...TGAGACAGGCTGAGACAGAAGACCACAAGCCAGGGCTGAAGGGCACCCTGGAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | GAACGGGGGCAAGCCGCTACTCGCAAGGAGGAGGGGAGATGTTGCCATAGAAACTCTGACGGCTGTGTGTaGCCCAGGATGGGATGTAGG | + |
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Preference number: 2 (lower is better) Translates to: ERGQAATRKEEGRCCHRNSDGCV*PRMGCR Trigger: CCTACATCCCATCCTGGGTCACACACAGCCGTCAGA...GTTTCTATGGCAACATCTCCCCTCCTCCTTGCGAGTAGCGGCTTGCCCCCGTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CCA 90 bp | GCTCCAGGGTGCCCTTCAGCCCTGGCTTGTGGTCTTCTGTCTCAGCCTGTCTCAGTGCCAAGCTGGGCCTaGCCCAGTGTGGTTCTAAAA | + |
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Preference number: 2 (lower is better) Translates to: APGCPSALACGLLSQPVSVPSWA*PSVVLK Trigger: TTTTAGAACCACACTGGGCCAGGCCCAGCTTGGCAC...TGAGACAGGCTGAGACAGAAGACCACAAGCCAGGGCTGAAGGGCACCCTGGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | GCCCAGGCTCCAGGGTGCCCTTCAGCCCTGGCTTGTGGTCTTCTGTCTCAGCCTGCCAGCATCCCATTATaGTGCTGCAGTTGTTACAAC | + |
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Preference number: 2 (lower is better) Translates to: AQAPGCPSALACGLLSQPASIPL*CCSCYN Trigger: GTTGTAACAACTGCAGCATCATAATGGGATGCTGGC...AGGCTGAGACAGAAGACCACAAGCCAGGGCTGAAGGGCACCCTGGAGCCTGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CCA 90 bp | TCCCAAAGGAGTGTGGTGGTGCCCATGATGTCCACACTAGAGGAGAGCAGTAGCAAAGGGATGTTCTGCTaGCCCCAGGCCGGCACACAG | + |
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Preference number: 2 (lower is better) Translates to: SQRSVVVPMMSTLEESSSKGMFC*PQAGTQ Trigger: CTGTGTGCCGGCCTGGGGCCAGCAGAACATCCCTTT...GCTACTGCTCTCCTCTAGTGTGGACATCATGGGCACCACCACACTCCTTTGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | TCCCAAAGGAGTGTGGTGGTGCCCATGATGTCCACACTAGAGGAGAGCAGTAGCACCACTAGTGCACTGTaGTACTCTCTCCGGGTCTGG | + |
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Preference number: 2 (lower is better) Translates to: SQRSVVVPMMSTLEESSSTTSAL*YSLRVW Trigger: CCAGACCCGGAGAGAGTATCACAGTGCACTAGTGGT...GCTACTGCTCTCCTCTAGTGTGGACATCATGGGCACCACCACACTCCTTTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | CCCAGTTGCCAATTAAGGGGCTGCTCGGAGAGGTGTACGGGGTACAGGCAGCCTGACACATTGTCTTACTaGCCAAGACAAGCTTGGTCC | + |
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Preference number: 2 (lower is better) Translates to: PSCQLRGCSERCTGYRQPDTLSY*PRQAWS Trigger: GGACCAAGCTTGTCTTGGTCAGTAAGACAATGTGTC...AGGCTGCCTGTACCCCGTACACCTCTCCGAGCAGCCCCTTAATTGGCAACTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | TCCCAAAGGAGTGTGGTGGTGCCCATGATGTCCACACTAGAGGAGAGCAGTAGCCCACCTACCGACAAATaGACAACAGAGCCAGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: SQRSVVVPMMSTLEESSSPPTDK*TTEPEA Trigger: GGCCTCTGGCTCTGTTGTTCATTTGTCGGTAGGTGG...GCTACTGCTCTCCTCTAGTGTGGACATCATGGGCACCACCACACTCCTTTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | TCCCAAAGGAGTGTGGTGGTGCCCATGATGTCCACACTAGAGGAGAGCAGTAGCGGGGTACAGGCAGCCTaGTTTCCATCTCCCCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: SQRSVVVPMMSTLEESSSGVQAA*FPSPQS Trigger: ACTTTGGGGAGATGGAAATCAGGCTGCCTGTACCCC...GCTACTGCTCTCCTCTAGTGTGGACATCATGGGCACCACCACACTCCTTTGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | GCCCAGGCTCCAGGGTGCCCTTCAGCCCTGGCTTGTGGTCTTCTGTCTCAGCCTAGACTGTCAGAACTTTaGTTTCCAGCTGTAATCTCT | + |
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Preference number: 2 (lower is better) Translates to: AQAPGCPSALACGLLSQPRLSEL*FPAVIS Trigger: AGAGATTACAGCTGGAAATCAAAGTTCTGACAGTCT...AGGCTGAGACAGAAGACCACAAGCCAGGGCTGAAGGGCACCCTGGAGCCTGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | CAGCTCAATGGAAAATTATTCAATTGTGAACGGGGGCAAGCCGCTACTCGCAAGGCACACAGCCCAGACTaGGCCTGTCCCCCTACACAC | + |
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Preference number: 2 (lower is better) Translates to: QLNGKLFNCERGQAATRKAHSPD*ACPPTH Trigger: GTGTGTAGGGGGACAGGCTCAGTCTGGGCTGTGTGC...CTTGCGAGTAGCGGCTTGCCCCCGTTCACAATTGAATAATTTTCCATTGAGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR GCA 90 bp | ACCCCACCCTTTCAGAGTTCAGTCCCCATGAGGCCCTTAAGTTGGCTAATACTAGCAGCTTGGTGCCACTaGTGGCTTTCTTGCCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: TPPFQSSVPMRPLSWLILAAWCH*WLSCQR Trigger: CCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGC...TAGTATTAGCCAACTTAAGGGCCTCATGGGGACTGAACTCTGAAAGGGTGGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR GCA 90 bp | TCCCAAAGGAGTGTGGTGGTGCCCATGATGTCCACACTAGAGGAGAGCAGTAGCGACGGCAGAGTGATGTaGCTTACAGTGTGCTTGTCT | + |
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Preference number: 2 (lower is better) Translates to: SQRSVVVPMMSTLEESSSDGRVM*LTVCLS Trigger: AGACAAGCACACTGTAAGGCACATCACTCTGCCGTC...GCTACTGCTCTCCTCTAGTGTGGACATCATGGGCACCACCACACTCCTTTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CCA 90 bp | ACCCCACCCTTTCAGAGTTCAGTCCCCATGAGGCCCTTAAGTTGGCTAATACTACTCCAGTCAGACCACTaGGGAAAGTCGGAGGCTGAG | + |
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Preference number: 2 (lower is better) Translates to: TPPFQSSVPMRPLSWLILLQSDH*GKSEAE Trigger: CTCAGCCTCCGACTTTCCCCAGTGGTCTGACTGGAG...TAGTATTAGCCAACTTAAGGGCCTCATGGGGACTGAACTCTGAAAGGGTGGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CCA 90 bp | CCCAAAGTGAAGGCTTCAGGAACTCAAGAAAAGAAGTTTCTGGGGCCCAGAGGACAGCAGCCCGAGTCATaGGCTAGGATAAGGACACAT | + |
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Preference number: 2 (lower is better) Translates to: PKVKASGTQEKKFLGPRGQQPES*ARIRTH Trigger: ATGTGTCCTTATCCTAGCCCATGACTCGGGCTGCTG...TCCTCTGGGCCCCAGAAACTTCTTTTCTTGAGTTCCTGAAGCCTTCACTTTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCAATGGAAAATTATTCAATTGTGAACGGGGGCAAGCCGCTACTCGCAAGTGGCTAATACTACCATaGACAAGGGGCGATGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: QLNGKLFNCERGQAATRKWLILP*TRGDGQ Trigger: CTGCCCATCGCCCCTTGTCCATGGTAGTATTAGCCA...CTTGCGAGTAGCGGCTTGCCCCCGTTCACAATTGAATAATTTTCCATTGAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CCA 90 bp | AACATAGGGAACAGGGAAGTGGAGAGGGAAACAGCCTGTTCCTTCTCTCCCTTCAAGAAAAGAAGTTTCTaGGGCCCAGAGGACCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: NIGNREVERETACSFSPFKKRSF*GPEDLE Trigger: TTCCAGGTCCTCTGGGCCCCAGAAACTTCTTTTCTT...GAAGGGAGAGAAGGAACAGGCTGTTTCCCTCTCCACTTCCCTGTTCCCTATGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | TCCCAAAGGAGTGTGGTGGTGCCCATGATGTCCACACTAGAGGAGAGCAGTAGCTTGGAAATGAAAATGTaGACACACCTATTCACCACC | + |
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Preference number: 2 (lower is better) Translates to: SQRSVVVPMMSTLEESSSLEMKM*THLFTT Trigger: GGTGGTGAATAGGTGTGTTCACATTTTCATTTCCAA...GCTACTGCTCTCCTCTAGTGTGGACATCATGGGCACCACCACACTCCTTTGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR TCA 90 bp | CAGCTCAATGGAAAATTATTCAATTGTGAACGGGGGCAAGCCGCTACTCGCAAGCCTAGTTTGGGTATTTaGAACTCAACCTTGCTTAGC | + |
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Preference number: 2 (lower is better) Translates to: QLNGKLFNCERGQAATRKPSLGI*NSTLLS Trigger: GCTAAGCAAGGTTGAGTTTCAAATACCCAAACTAGG...CTTGCGAGTAGCGGCTTGCCCCCGTTCACAATTGAATAATTTTCCATTGAGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR GCA 72 bp | TTGTCTTGTCCCTGTGACTGCAGCCCAGGACCCATGTaGAAGGCCCCTGGGGAGCCCAAGGTGGCTCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: LSCPCDCSPGPM*KAPGEPKVALG Trigger: CCCCAGAGCCACCTTGGGCTCCCCAGGGGCCTTGCACATGGGTCCTGGGCTGCAGTCACAGGGACAAGACAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR CCA 72 bp | CCAGGGTACTGCCCCACAGAAGCAGGTGGGCATCCCTaGCTGGTGAGGGAGCTGGGGAAACCACAGCCACCT | + |
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Preference number: 3 (lower is better) Translates to: PGYCPTEAGGHP*LVRELGKPQPP Trigger: AGGTGGCTGTGGTTTCCCCAGCTCCCTCACCAGCCAGGGATGCCCACCTGCTTCTGTGGGGCAGTACCCTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR-3UTR CAA 90 bp | GCCCAGGCTCCAGGGTGCCCTTCAGCCCTGGCTTGTGGTCTTCTGTCTCAGCCTTACACACACCTCCCCTaGCCTCCCCCAGGTGGAGAT | + |
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Preference number: 3 (lower is better) Translates to: AQAPGCPSALACGLLSQPYTHLP*PPPGGD Trigger: ATCTCCACCTGGGGGAGGCAAGGGGAGGTGTGTGTA...AGGCTGAGACAGAAGACCACAAGCCAGGGCTGAAGGGCACCCTGGAGCCTGGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
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| 3UTR CCA 72 bp | CGATGGGCAGCCAGAGGGGATGCACAGGCCATTCAGTaGGCAGCTTGGTGCCACTGCTGGCTTTCTTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: RWAARGDAQAIQ*AAWCHCWLSCQ Trigger: CTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGCTGCCCATCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR CCA 72 bp | GCCAGAGGGGATGCACAGGCCATTCAGTGGGCAGCTTaGTGCCACTGCTGGCTTTCTTGCCAGAGGCGTCTT | + |
|
Preference number: 3 (lower is better) Translates to: ARGDAQAIQWAA*CHCWLSCQRRL Trigger: AAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR-3UTR CAA 90 bp | CCCAGTTGCCAATTAAGGGGCTGCTCGGAGAGGTGTACGGGGTACAGGCAGCCTCCACTGCTGGCTTTCTaGCCAGAGGCGTCTTGTGCT | + |
|
Preference number: 3 (lower is better) Translates to: PSCQLRGCSERCTGYRQPPLLAF*PEASCA Trigger: AGCACAAGACGCCTCTGGCAAGAAAGCCAGCAGTGG...AGGCTGCCTGTACCCCGTACACCTCTCCGAGCAGCCCCTTAATTGGCAACTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR GCA 72 bp | GGGAAACAGCCTGTTCCTTCTCTCCCTTCGCCCAGTTaGCAATTAAGGGGCTGCTCGGAGAGGTGTACGGGG | + |
|
Preference number: 3 (lower is better) Translates to: GKQPVPSLPSPS*QLRGCSERCTG Trigger: CCCCGTACACCTCTCCGAGCAGCCCCTTAATTGGCAACTGGGCGAAGGGAGAGAAGGAACAGGCTGTTTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR GCA 72 bp | ATGTGCCTTACAGTGTGCTTGTCTTGTCCCTGTGACTaGAGCCCAGGACCCATGTGCAAGGCCCCTGGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: MCLTVCLSCPCD*SPGPMCKAPGE Trigger: CTCCCCAGGGGCCTTGCACATGGGTCCTGGGCTGCAGTCACAGGGACAAGACAAGCACACTGTAAGGCACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR-3UTR CAA 90 bp | GAACGGGGGCAAGCCGCTACTCGCAAGGAGGAGGGGAGATGTTGCCATAGAAACCTGACCAAGACAAGCTaGGTCCTCCTGTGTGCAGGG | + |
|
Preference number: 3 (lower is better) Translates to: ERGQAATRKEEGRCCHRNLTKTS*VLLCAG Trigger: CCCTGCACACAGGAGGACCAAGCTTGTCTTGGTCAG...GTTTCTATGGCAACATCTCCCCTCCTCCTTGCGAGTAGCGGCTTGCCCCCGTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR-3UTR CAA 90 bp | GAACGGGGGCAAGCCGCTACTCGCAAGGAGGAGGGGAGATGTTGCCATAGAAACCATTCAGTGGGCAGCTaGGTGCCACTGCTGGCTTTC | + |
|
Preference number: 3 (lower is better) Translates to: ERGQAATRKEEGRCCHRNHSVGS*VPLLAF Trigger: GAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATG...GTTTCTATGGCAACATCTCCCCTCCTCCTTGCGAGTAGCGGCTTGCCCCCGTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR CCA 72 bp | GCACAGGCCATTCAGTGGGCAGCTTGGTGCCACTGCTaGCTTTCTTGCCAGAGGCGTCTTGTGCTAATGGGA | + |
|
Preference number: 3 (lower is better) Translates to: AQAIQWAAWCHC*LSCQRRLVLMG Trigger: TCCCATTAGCACAAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR GCA 72 bp | GATGCACAGGCCATTCAGTGGGCAGCTTGGTGCCACTaGTGGCTTTCTTGCCAGAGGCGTCTTGTGCTAATG | + |
|
Preference number: 3 (lower is better) Translates to: DAQAIQWAAWCH*WLSCQRRLVLM Trigger: CATTAGCACAAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR GCA 72 bp | GATGGTAAGGACGGCAGAGTGATGTGCCTTACAGTGTaGTTGTCTTGTCCCTGTGACTGCAGCCCAGGACCC | + |
|
Preference number: 3 (lower is better) Translates to: DGKDGRVMCLTV*LSCPCDCSPGP Trigger: GGGTCCTGGGCTGCAGTCACAGGGACAAGACAAGCACACTGTAAGGCACATCACTCTGCCGTCCTTACCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR GCA 72 bp | AGCCTGTCTCATATGTGTATGAATGAGCCAGGGTACTaGCCCACAGAAGCAGGTGGGCATCCCTGGCTGGTG | + |
|
Preference number: 3 (lower is better) Translates to: SLSHMCMNEPGY*PTEAGGHPWLV Trigger: CACCAGCCAGGGATGCCCACCTGCTTCTGTGGGGCAGTACCCTGGCTCATTCATACACATATGAGACAGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR TCA 72 bp | CTGGGGAAACCACAGCCACCTCTCTGTGTCCACAGATaGCCTGTGTTCTCAGGACTGTCCCAAAGGAGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: LGKPQPPLCVHR*PVFSGLSQRSV Trigger: CACACTCCTTTGGGACAGTCCTGAGAACACAGGTCATCTGTGGACACAGAGAGGTGGCTGTGGTTTCCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR CCA 72 bp | CTTAAGTTGGCTAATACTACCATGGACAAGGGGCGATaGGCAGCCAGAGGGGATGCACAGGCCATTCAGTGG | + |
|
Preference number: 3 (lower is better) Translates to: LKLANTTMDKGR*AARGDAQAIQW Trigger: CCACTGAATGGCCTGTGCATCCCCTCTGGCTGCCCATCGCCCCTTGTCCATGGTAGTATTAGCCAACTTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR TCA 72 bp | GGTCTTCTGTCTCAGCCTGTCTCATATGTGTATGAATaGGCCAGGGTACTGCCCCACAGAAGCAGGTGGGCA | + |
|
Preference number: 3 (lower is better) Translates to: GLLSQPVSYVYE*ARVLPHRSRWA Trigger: TGCCCACCTGCTTCTGTGGGGCAGTACCCTGGCTCATTCATACACATATGAGACAGGCTGAGACAGAAGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR TCA 72 bp | CCCTGCTCCCCAGTCAACATGGTCCTTTTGTGGCTCTaGTCTGTCAACCTTAATGAAGTGGCTTCCTGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: PCSPVNMVLLWL*SVNLNEVASWL Trigger: CAGCCAGGAAGCCACTTCATTAAGGTTGACAGATCAGAGCCACAAAAGGACCATGTTGACTGGGGAGCAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR TCA 72 bp | CCGTCACATCTTCCTGAGATGGTAAGGACGGCAGAGTaGTGTGCCTTACAGTGTGCTTGTCTTGTCCCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: PSHLPEMVRTAE*CALQCACLVPV Trigger: CACAGGGACAAGACAAGCACACTGTAAGGCACATCACTCTGCCGTCCTTACCATCTCAGGAAGATGTGACGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR CCA 72 bp | AATATAAGTTCTCATCTCAGCAGTCACAGCCAGCCCTaGAGTGAGCTGCTTCTGACGGCTGTGTGTGACCCA | + |
|
Preference number: 3 (lower is better) Translates to: NISSHLSSHSQP*SELLLTAVCDP Trigger: TGGGTCACACACAGCCGTCAGAAGCAGCTCACTCCAGGGCTGGCTGTGACTGCTGAGATGAGAACTTATATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR GCA 72 bp | CTCTACTTTCAGACTCACATTTTATACACAGCGGAGTaGGCTCTTTCACAGCGCGCCCCTTCAGATGTCAGC | + |
|
Preference number: 3 (lower is better) Translates to: LYFQTHILYTAE*ALSQRAPSDVS Trigger: GCTGACATCTGAAGGGGCGCGCTGTGAAAGAGCGCACTCCGCTGTGTATAAAATGTGAGTCTGAAAGTAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR TCA 72 bp | CAGCTACCAGTGTCCCTTCGGAGACTGTCAGAACTTTaGTTTCCAGCTGTAATCTCTCAGTCCACCTACCGA | + |
|
Preference number: 3 (lower is better) Translates to: QLPVSLRRLSEL*FPAVISQSTYR Trigger: TCGGTAGGTGGACTGAGAGATTACAGCTGGAAATCAAAGTTCTGACAGTCTCCGAAGGGACACTGGTAGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR TCA 72 bp | GATCTGTCAACCTTAATGAAGTGGCTTCCTGGCTGCTaGGGATTGAAAGCTGCTACTGAGGACGTAAGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: DLSTLMKWLPGC*GLKAATEDVSH Trigger: GTGACTTACGTCCTCAGTAGCAGCTTTCAATCCTCAGCAGCCAGGAAGCCACTTCATTAAGGTTGACAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR-3UTR CAA 90 bp | ACCCCACCCTTTCAGAGTTCAGTCCCCATGAGGCCCTTAAGTTGGCTAATACTAAACACACTGACTGTTTaGGGTTTGTTTGTGTCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: TPPFQSSVPMRPLSWLILNTLTV*GLFVSG Trigger: CCCAGACACAAACAAACCCAAAACAGTCAGTGTGTT...TAGTATTAGCCAACTTAAGGGCCTCATGGGGACTGAACTCTGAAAGGGTGGGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR TCA 72 bp | GTGGCTTCCTGGCTGCTGAGGATTGAAAGCTGCTACTaGGGACGTAAGTCACTAATAGAATGGAAAACACCA | + |
|
Preference number: 3 (lower is better) Translates to: VASWLLRIESCY*GRKSLIEWKTP Trigger: TGGTGTTTTCCATTCTATTAGTGACTTACGTCCTCAGTAGCAGCTTTCAATCCTCAGCAGCCAGGAAGCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR-3UTR CAA 90 bp | CCCAAAGTGAAGGCTTCAGGAACTCAAGAAAAGAAGTTTCTGGGGCCCAGAGGACTGTTTTGGGTTTGTTaGTGTCTGGGTTATTTTCTT | + |
|
Preference number: 3 (lower is better) Translates to: PKVKASGTQEKKFLGPRGLFWVC*CLGYFL Trigger: AAGAAAATAACCCAGACACAAACAAACCCAAAACAG...TCCTCTGGGCCCCAGAAACTTCTTTTCTTGAGTTCCTGAAGCCTTCACTTTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR-3UTR CAA 90 bp | CAGCTCAATGGAAAATTATTCAATTGTGAACGGGGGCAAGCCGCTACTCGCAAGCTGACTGTTTTGGGTTaGTTTGTGTCTGGGTTATTT | + |
|
Preference number: 3 (lower is better) Translates to: QLNGKLFNCERGQAATRKLTVLG*FVSGLF Trigger: AAATAACCCAGACACAAACAAACCCAAAACAGTCAG...CTTGCGAGTAGCGGCTTGCCCCCGTTCACAATTGAATAATTTTCCATTGAGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS-3UTR GCA 90 bp | CCCAGTTGCCAATTAAGGGGCTGCTCGGAGAGGTGTACGGGGTACAGGCAGCCTGGCGGGCAGGAACCCTaGGGCCTCACTGCTACCGTC | + |
|
Preference number: 4 (lower is better) Translates to: PSCQLRGCSERCTGYRQPGGQEP*GLTATV Trigger: GACGGTAGCAGTGAGGCCGCAGGGTTCCTGCCCGCC...AGGCTGCCTGTACCCCGTACACCTCTCCGAGCAGCCCCTTAATTGGCAACTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS-3UTR GCA 90 bp | CCCAGTTGCCAATTAAGGGGCTGCTCGGAGAGGTGTACGGGGTACAGGCAGCCTCTGTGGGAGGCCTGCTaGTCCCTGGCCACCACAAGC | + |
|
Preference number: 4 (lower is better) Translates to: PSCQLRGCSERCTGYRQPLWEAC*SLATTS Trigger: GCTTGTGGTGGCCAGGGAGCAGCAGGCCTCCCACAG...AGGCTGCCTGTACCCCGTACACCTCTCCGAGCAGCCCCTTAATTGGCAACTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR CAA 72 bp | AGCCAGAGGGGATGCACAGGCCATTCAGTGGGCAGCTaGGTGCCACTGCTGGCTTTCTTGCCAGAGGCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: SQRGCTGHSVGS*VPLLAFLPEAS Trigger: AGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS-3UTR GCA 90 bp | AACATAGGGAACAGGGAAGTGGAGAGGGAAACAGCCTGTTCCTTCTCTCCCTTCTCCCTGTGGGAGGCCTaGTGCTCCCTGGCCACCACA | + |
|
Preference number: 4 (lower is better) Translates to: NIGNREVERETACSFSPFSLWEA*CSLATT Trigger: TGTGGTGGCCAGGGAGCAGCAGGCCTCCCACAGGGA...GAAGGGAGAGAAGGAACAGGCTGTTTCCCTCTCCACTTCCCTGTTCCCTATGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS-3UTR CCA 90 bp | CTGAGAAACATAGGGAACAGGGAAGTGGAGAGGGAAACAGCCTGTTCCTTCTCTCCGGTGTGCTCCCTGTaGGAGGCCTGCTGCTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: LRNIGNREVERETACSFSPVCSL*EACCSL Trigger: CAGGGAGCAGCAGGCCTCCCACAGGGAGCACACCGG...AGAGAAGGAACAGGCTGTTTCCCTCTCCACTTCCCTGTTCCCTATGTTTCTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR CAA 72 bp | AGGGAAACAGCCTGTTCCTTCTCTCCCTTCGCCCAGTaGCCAATTAAGGGGCTGCTCGGAGAGGTGTACGGG | + |
|
Preference number: 4 (lower is better) Translates to: RETACSFSPFAQ*PIKGLLGEVYG Trigger: CCCGTACACCTCTCCGAGCAGCCCCTTAATTGGCAACTGGGCGAAGGGAGAGAAGGAACAGGCTGTTTCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS-3UTR GCA 90 bp | ACCCCACCCTTTCAGAGTTCAGTCCCCATGAGGCCCTTAAGTTGGCTAATACTAGCTGCTCAGCTCCTCTaGCAGAGTCCCCAGAGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: TPPFQSSVPMRPLSWLILAAQLL*QSPQRA Trigger: GGCCCTCTGGGGACTCTGGCAGAGGAGCTGAGCAGC...TAGTATTAGCCAACTTAAGGGCCTCATGGGGACTGAACTCTGAAAGGGTGGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR CAA 72 bp | GGTAAGGACGGCAGAGTGATGTGCCTTACAGTGTGCTaGTCTTGTCCCTGTGACTGCAGCCCAGGACCCATG | + |
|
Preference number: 4 (lower is better) Translates to: GKDGRVMCLTVC*SCPCDCSPGPM Trigger: CATGGGTCCTGGGCTGCAGTCACAGGGACAAGACAAGCACACTGTAAGGCACATCACTCTGCCGTCCTTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS-3UTR CCA 90 bp | CCCAAAGTGAAGGCTTCAGGAACTCAAGAAAAGAAGTTTCTGGGGCCCAGAGGACAGGGCCTGTGGCTGTaGATTTTGAACCGAGTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: PKVKASGTQEKKFLGPRGQGLWL*ILNRVG Trigger: CCCAACTCGGTTCAAAATCCACAGCCACAGGCCCTG...TCCTCTGGGCCCCAGAAACTTCTTTTCTTGAGTTCCTGAAGCCTTCACTTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS-3UTR CCA 90 bp | CAGCTCAATGGAAAATTATTCAATTGTGAACGGGGGCAAGCCGCTACTCGCAAGCACAAGCAGGGCCTGTaGCTGTGGATTTTGAACCGA | + |
|
Preference number: 4 (lower is better) Translates to: QLNGKLFNCERGQAATRKHKQGL*LWILNR Trigger: TCGGTTCAAAATCCACAGCCACAGGCCCTGCTTGTG...CTTGCGAGTAGCGGCTTGCCCCCGTTCACAATTGAATAATTTTCCATTGAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR CAA 72 bp | TTAATGATTAAAGGTAATGACAGCAGATGCGTTCCTTaGAAGGCCTCCCCCTTCATCTCAGCCCTCTCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: LMIKGNDSRCVP*KASPFISALSV Trigger: GACGGAGAGGGCTGAGATGAAGGGGGAGGCCTTCAAAGGAACGCATCTGCTGTCATTACCTTTAATCATTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| 3UTR CAA 72 bp | GCTAATGGGATGGAGAACACACTGACTGTTTTGGGTTaGTTTGTGTCTGGGTTATTTTCTTCTCCTTCATTT | + |
|
Preference number: 4 (lower is better) Translates to: ANGMENTLTVLG*FVSGLFSSPSF Trigger: AAATGAAGGAGAAGAAAATAACCCAGACACAAACAAACCCAAAACAGTCAGTGTGTTCTCCATCCCATTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS CCA 90 bp | GGCTGTAGCTGCTCAGCTCCTCTGCCAGAGTCCCCAGAGGGCCGCTaGCCTTCTCCGAGTCGGCGGGCAGGAACCCTGCGGCCTCACTGC | + |
|
Preference number: 5 (lower is better) Translates to: GCSCSAPLPESPEGR*PSPSRRAGTLRPHC Trigger: GCAGTGAGGCCGCAGGGTTCCTGCCCGCCGACTCGGAGAAGGCCAGCGGCCCTCTGGGGACTCTGGCAGAGGAGCTGAGCAGCTACAGCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS GCA 90 bp | GCGGCCTCACTGCTACCGTCTTGCCTCCCTAGACGGAAGCCGGTGTaGTCCCTGTGGGAGGCCTGCTGCTCCCTGGCCACCACAAGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: AASLLPSCLPRRKPV*SLWEACCSLATTSR Trigger: CCTGCTTGTGGTGGCCAGGGAGCAGCAGGCCTCCCACAGGGAGCACACCGGCTTCCGTCTAGGGAGGCAAGACGGTAGCAGTGAGGCCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS GCA 90 bp | TCTTGCCTCCCTAGACGGAAGCCGGTGTGCTCCCTGTGGGAGGCCTaGTGCTCCCTGGCCACCACAAGCAGGGCCTGTGGCTGTGGATTT | + |
|
Preference number: 5 (lower is better) Translates to: SCLPRRKPVCSLWEA*CSLATTSRACGCGF Trigger: AAATCCACAGCCACAGGCCCTGCTTGTGGTGGCCAGGGAGCAGCAGGCCTCCCACAGGGAGCACACCGGCTTCCGTCTAGGGAGGCAAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS CCA 90 bp | CCAGCTGGGCCCAGTTCATCCTGGCTCCGATGTCACCGATGTCTGTaGGTCCCCTTCTGTCCAGCAGGGGAAAGCAGGCACTCAGAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: PAGPSSSWLRCHRCL*VPFCPAGESRHSEG Trigger: TCCCTCTGAGTGCCTGCTTTCCCCTGCTGGACAGAAGGGGACCCACAGACATCGGTGACATCGGAGCCAGGATGAACTGGGCCCAGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS CCA 90 bp | TGGCCACCACAAGCAGGGCCTGTGGCTGTGGATTTTGAACCGAGTTaGGGGGATGTCCCTCAGCCAGCTGGGCCCAGTTCATCCTGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: WPPQAGPVAVDFEPS*GDVPQPAGPSSSWL Trigger: GAGCCAGGATGAACTGGGCCCAGCTGGCTGAGGGACATCCCCCCAACTCGGTTCAAAATCCACAGCCACAGGCCCTGCTTGTGGTGGCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS CCA 72 bp | TGCTCAGCTCCTCTGCCAGAGTCCCCAGAGGGCCGCTaGCCTTCTCCGAGTCGGCGGGCAGGAACCCTGCGG | + |
|
Preference number: 6 (lower is better) Translates to: CSAPLPESPEGR*PSPSRRAGTLR Trigger: CCGCAGGGTTCCTGCCCGCCGACTCGGAGAAGGCCAGCGGCCCTCTGGGGACTCTGGCAGAGGAGCTGAGCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS GCA 72 bp | GCGGGCAGGAACCCTGCGGCCTCACTGCTACCGTCTTaGCTCCCTAGACGGAAGCCGGTGTGCTCCCTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: AGRNPAASLLPS*LPRRKPVCSLW Trigger: CCACAGGGAGCACACCGGCTTCCGTCTAGGGAGGCAAGACGGTAGCAGTGAGGCCGCAGGGTTCCTGCCCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS CCA 72 bp | CCCAGTTCATCCTGGCTCCGATGTCACCGATGTCTGTaGGTCCCCTTCTGTCCAGCAGGGGAAAGCAGGCAC | + |
|
Preference number: 6 (lower is better) Translates to: PSSSWLRCHRCL*VPFCPAGESRH Trigger: GTGCCTGCTTTCCCCTGCTGGACAGAAGGGGACCCACAGACATCGGTGACATCGGAGCCAGGATGAACTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||
| CDS CCA 72 bp | CAAGCAGGGCCTGTGGCTGTGGATTTTGAACCGAGTTaGGGGGATGTCCCTCAGCCAGCTGGGCCCAGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: QAGPVAVDFEPS*GDVPQPAGPSS Trigger: TGAACTGGGCCCAGCTGGCTGAGGGACATCCCCCCAACTCGGTTCAAAATCCACAGCCACAGGCCCTGCTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057407.3 |
||