Pregenerated sensors for PYY (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017311

Ensembl transcript IDs: ENSMUST00000017455.15, ENSMUST00000127381.3, ENSMUST00000177304.8

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	GACAGGGAAATGAACACACACAGCCCTCCAGTCTGGGTGTCCGAGACACCGAGACTTTTTCCATACCGCTaGCGGGTGACCAGGTTGAGG	+
Preference number: 4 (lower is better) Translates to: DREMNTHSPPVWVSETPRLFPYR*RVTRLR Trigger: CCTCAACCTGGTCACCCGGCAGCGGTATGGAAAAAG...TCTCGGTGTCTCGGACACCCAGACTGGAGGGCTGTGTGTGTTCATTTCCCTGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000017455.15 ENSMUST00000127381.3 ENSMUST00000177304.8
CDS-3UTR GCA 90 bp	CAGGGAAATGAACACACACAGCCCTCCAGTCTGGGTGTCCGAGACACCGAGATACTTTTTCCATACCGCTaGCGGGTGACCAGGTTGAGG	+
Preference number: 4 (lower is better) Translates to: QGNEHTQPSSLGVRDTEILFPYR*RVTRLR Trigger: CCTCAACCTGGTCACCCGGCAGCGGTATGGAAAAAG...TATCTCGGTGTCTCGGACACCCAGACTGGAGGGCTGTGTGTGTTCATTTCCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000017455.15 ENSMUST00000127381.3 ENSMUST00000177304.8
CDS-3UTR CCA 90 bp	CAGGGAAATGAACACACACAGCCCTCCAGTCTGGGTGTCCGAGACACCGAGATACTGGTCCAAACCTTCTaGCCTGAAGGGGAGGTTCTC	+
Preference number: 4 (lower is better) Translates to: QGNEHTQPSSLGVRDTEILVQTF*PEGEVL Trigger: GAGAACCTCCCCTTCAGGCCAGAAGGTTTGGACCAG...TATCTCGGTGTCTCGGACACCCAGACTGGAGGGCTGTGTGTGTTCATTTCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017455.15
CDS-3UTR GCA 90 bp	AGGGAAATGAACACACACAGCCCTCCAGTCTGGGTGTCCGAGACACCGAGATATCTTTTTCCATACCGCTaGCGGGTGACCAGGTTGAGG	+
Preference number: 4 (lower is better) Translates to: REMNTHSPPVWVSETPRYLFPYR*RVTRLR Trigger: CCTCAACCTGGTCACCCGGCAGCGGTATGGAAAAAG...ATATCTCGGTGTCTCGGACACCCAGACTGGAGGGCTGTGTGTGTTCATTTCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000017455.15 ENSMUST00000127381.3 ENSMUST00000177304.8
CDS-3UTR TCA 90 bp	ACCAAACATGCAAGTGAAGTCGGTGTAGTTAACACATCTCGCAGGAGGCCTTGGCCAAACCTTCTGGCCTaGAGGGGAGGTTCTCGCTGT	+
Preference number: 4 (lower is better) Translates to: TKHASEVGVVNTSRRRPWPNLLA*RGGSRC Trigger: ACAGCGAGAACCTCCCCTTCAGGCCAGAAGGTTTGG...CCAAGGCCTCCTGCGAGATGTGTTAACTACACCGACTTCACTTGCATGTTTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017455.15
CDS GCA 90 bp	CTCGCTGTCGCTGTCGTCTGTGAAGAGCAGTTTGGAGAACAGAGCTaGGGGGACATCTCTTTTTCCATACCGCTGCCGGGTGACCAGGTT	+
Preference number: 5 (lower is better) Translates to: LAVAVVCEEQFGEQS*GDISFSIPLPGDQV Trigger: AACCTGGTCACCCGGCAGCGGTATGGAAAAAGAGATGTCCCCGCAGCTCTGTTCTCCAAACTGCTCTTCACAGACGACAGCGACAGCGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000017455.15 ENSMUST00000127381.3 ENSMUST00000177304.8
CDS GCA 72 bp	GCTGTCGTCTGTGAAGAGCAGTTTGGAGAACAGAGCTaGGGGGACATCTCTTTTTCCATACCGCTGCCGGGT	+
Preference number: 6 (lower is better) Translates to: AVVCEEQFGEQS*GDISFSIPLPG Trigger: ACCCGGCAGCGGTATGGAAAAAGAGATGTCCCCGCAGCTCTGTTCTCCAAACTGCTCTTCACAGACGACAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000017455.15 ENSMUST00000127381.3 ENSMUST00000177304.8

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu