Pregenerated sensors for PYURF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043162Ensembl transcript IDs: ENSMUST00000053386.6
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTTGGCAAAAGCACACTGTAAAGTCAAAGCCTGTCTGTGGTCTGTaGTGGTGCAGCCCTGTGGGACATTCTCCTCCAGAAAAGCAGATC | + |
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Preference number: 1 (lower is better) Translates to: GWQKHTVKSKPVCGL*WCSPVGHSPPEKQI Trigger: GATCTGCTTTTCTGGAGGAGAATGTCCCACAGGGCTGCACCAGCACAGACCACAGACAGGCTTTGACTTTACAGTGTGCTTTTGCCAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR GCA 90 bp | CAAAAGCACACTGTAAAGTCAAAGCCTGTCTGTGGTCTGTGCTGGTaGAGCCCTGTGGGACATTCTCCTCCAGAAAAGCAGATCAGAATA | + |
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Preference number: 1 (lower is better) Translates to: QKHTVKSKPVCGLCW*SPVGHSPPEKQIRI Trigger: TATTCTGATCTGCTTTTCTGGAGGAGAATGTCCCACAGGGCTGCACCAGCACAGACCACAGACAGGCTTTGACTTTACAGTGTGCTTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 90 bp | CTCAAGTGCTGGGATTCAGAGGAACTCCCTGGCTCAAGTCGATACTaGAATGCTTGTTTGTCTATCTGTAAAACTGTGCTATTACCTCCT | + |
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Preference number: 1 (lower is better) Translates to: LKCWDSEELPGSSRY*NACLSICKTVLLPP Trigger: AGGAGGTAATAGCACAGTTTTACAGATAGACAAACAAGCATTTCAGTATCGACTTGAGCCAGGGAGTTCCTCTGAATCCCAGCACTTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 90 bp | ATTAGAGTTTTGATAAACAGTTCTCTAGCTCAAGATGTCCTTGACTaGCTTCCTCATCCTGCTGCACATCTCAAGTGCTGGGATTCAGAG | + |
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Preference number: 1 (lower is better) Translates to: IRVLINSSLAQDVLD*LPHPAAHLKCWDSE Trigger: CTCTGAATCCCAGCACTTGAGATGTGCAGCAGGATGAGGAAGTCAGTCAAGGACATCTTGAGCTAGAGAACTGTTTATCAAAACTCTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR GCA 90 bp | GTTGGGCCGGGGCATGTGCAACCAATTAAATTTATAAGCAATTCTTaGATTTCTTTAGGGGAAGGACTGAGAAACTCAGGCTCTGTTTCT | + |
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Preference number: 1 (lower is better) Translates to: VGPGHVQPIKFISNS*ISLGEGLRNSGSVS Trigger: AGAAACAGAGCCTGAGTTTCTCAGTCCTTCCCCTAAAGAAATGCAAGAATTGCTTATAAATTTAATTGGTTGCACATGCCCCGGCCCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CCA 90 bp | ATCTATATCAGCTCCTGCCTCCAGGTTCCTGCCCTGTTTGAGGTTTTTGTCCTGGCTGGTGCAGCCCTGTaGGACATTCTCCTCCAGAAA | + |
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Preference number: 2 (lower is better) Translates to: IYISSCLQVPALFEVFVLAGAAL*DILLQK Trigger: TTTCTGGAGGAGAATGTCCCACAGGGCTGCACCAGC...CAGGACAAAAACCTCAAACAGGGCAGGAACCTGGAGGCAGGAGCTGATATAGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR GCA 90 bp | ACCAATCTGTTCTGTGACTTCCCCATGCTATGGCTCTTCCCCACACAGAGAGTACAGTGGTCACACACTTaGCTAACATACACAAGGCGT | + |
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Preference number: 2 (lower is better) Translates to: TNLFCDFPMLWLFPTQRVQWSHT*LTYTRR Trigger: ACGCCTTGTGTATGTTAGGCAAGTGTGTGACCACTG...TACTCTCTGTGTGGGGAAGAGCCATAGCATGGGGAAGTCACAGAACAGATTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR TCA 90 bp | GGGATTCAGAGGAACTCCCTGGCTCAAGTCGATACTGAAATGCTTGTTTGTCTACACCAATCTGTTCTGTaGCTTCCCCATGCTATGGCT | + |
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Preference number: 2 (lower is better) Translates to: GIQRNSLAQVDTEMLVCLHQSVL*LPHAMA Trigger: AGCCATAGCATGGGGAAGTCACAGAACAGATTGGTG...TAGACAAACAAGCATTTCAGTATCGACTTGAGCCAGGGAGTTCCTCTGAATCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CCA 90 bp | ACCAATCTGTTCTGTGACTTCCCCATGCTATGGCTCTTCCCCACACAGAGAGTACACACATTGCTATGGTaGTTGGCAAAAGCACACTGT | + |
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Preference number: 2 (lower is better) Translates to: TNLFCDFPMLWLFPTQRVHTLLW*LAKAHC Trigger: ACAGTGTGCTTTTGCCAACCACCATAGCAATGTGTG...TACTCTCTGTGTGGGGAAGAGCCATAGCATGGGGAAGTCACAGAACAGATTGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR GCA 90 bp | TATTCTGATCATTTTTGTCCCAGTACCCTCTTAATGCCCCTACCATTGAAACACTGTGGTCTGTGCTGGTaGAGCCCTGTGGGACATTCT | + |
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Preference number: 2 (lower is better) Translates to: YSDHFCPSTLLMPLPLKHCGLCW*SPVGHS Trigger: AGAATGTCCCACAGGGCTGCACCAGCACAGACCACA...GTGTTTCAATGGTAGGGGCATTAAGAGGGTACTGGGACAAAAATGATCAGAATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CAA 90 bp | CCTGCAGATTGGTTGCCAACAGGCACCAATATTTCTAGCATCCACTaGGCTCACCTCTCACCTTTACCTGTGTTACGTCATTTTCCATAT | + |
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Preference number: 2 (lower is better) Translates to: PADWLPTGTNISSIH*AHLSPLPVLRHFPY Trigger: ATATGGAAAATGACGTAACACAGGTAAAGGTGAGAGGTGAGCCAAGTGGATGCTAGAAATATTGGTGCCTGTTGGCAACCAATCTGCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR TCA 90 bp | TCTGGTATTACCTTGTGCTGGATAGTTTTTGTCAACTTGAAACATGCTAAAATCCCTGGCCACCTGACTTaGGGCTCCATCACCCAATGG | + |
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Preference number: 2 (lower is better) Translates to: SGITLCWIVFVNLKHAKIPGHLT*GSITQW Trigger: CCATTGGGTGATGGAGCCTCAAGTCAGGTGGCCAGG...GATTTTAGCATGTTTCAAGTTGACAAAAACTATCCAGCACAAGGTAATACCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGTCCTGACCTTCTTTGATGATTGTGATGGAAATGTAAGCCAAATAAACCCTGTCAAAGCCTGTCTGTaGTCTGTGCTGGTGCAGCCC | + |
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Preference number: 2 (lower is better) Translates to: FVLTFFDDCDGNVSQINPVKACL*SVLVQP Trigger: GGGCTGCACCAGCACAGACCACAGACAGGCTTTGAC...AGGGTTTATTTGGCTTACATTTCCATCACAATCATCAAAGAAGGTCAGGACAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CCA 90 bp | GGGATTCAGAGGAACTCCCTGGCTCAAGTCGATACTGAAATGCTTGTTTGTCTAACACACACATTGCTATaGTGGTTGGCAAAAGCACAC | + |
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Preference number: 2 (lower is better) Translates to: GIQRNSLAQVDTEMLVCLTHTLL*WLAKAH Trigger: GTGTGCTTTTGCCAACCACCATAGCAATGTGTGTGT...TAGACAAACAAGCATTTCAGTATCGACTTGAGCCAGGGAGTTCCTCTGAATCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR TCA 90 bp | ACTTATCAGGTTGACACTAGCTTTAAGGGCAAAACTGTTCATTTACATTGTCCAGCCTCAGCTGATGACTaGAATGCTTCCTCTGACAGT | + |
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Preference number: 2 (lower is better) Translates to: TYQVDTSFKGKTVHLHCPASADD*NASSDS Trigger: ACTGTCAGAGGAAGCATTTCAGTCATCAGCTGAGGC...TGGACAATGTAAATGAACAGTTTTGCCCTTAAAGCTAGTGTCAACCTGATAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR TCA 90 bp | ATTTCTTTAGGGGAAGGACTGAGAAACTCAGGCTCTGTTTCTAACGTAGATACTCAAATGAATGGGATTTaGAGCAAGCCTCAGCTGATG | + |
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Preference number: 2 (lower is better) Translates to: ISLGEGLRNSGSVSNVDTQMNGI*SKPQLM Trigger: CATCAGCTGAGGCTTGCTTCAAATCCCATTCATTTG...AGTATCTACGTTAGAAACAGAGCCTGAGTTTCTCAGTCCTTCCCCTAAAGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR GCA 90 bp | TTTGTCCTGACCTTCTTTGATGATTGTGATGGAAATGTAAGCCAAATAAACCCTAAAGCTTCCATAGCCTaGTTCCTGGTCCTAAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: FVLTFFDDCDGNVSQINPKASIA*FLVLSL Trigger: CAGGCTTAGGACCAGGAAGCAGGCTATGGAAGCTTT...AGGGTTTATTTGGCTTACATTTCCATCACAATCATCAAAGAAGGTCAGGACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR GCA 90 bp | TTTGTCCTGACCTTCTTTGATGATTGTGATGGAAATGTAAGCCAAATAAACCCTACTTCCTCATCCTGCTaGACATCTCAAGTGCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: FVLTFFDDCDGNVSQINPTSSSC*TSQVLG Trigger: TCCCAGCACTTGAGATGTGCAGCAGGATGAGGAAGT...AGGGTTTATTTGGCTTACATTTCCATCACAATCATCAAAGAAGGTCAGGACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR TCA 90 bp | TATTCTGATCATTTTTGTCCCAGTACCCTCTTAATGCCCCTACCATTGAAACACTCACCAGCTTTCAAATaGATGGGATTTGAAGCAAGC | + |
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Preference number: 2 (lower is better) Translates to: YSDHFCPSTLLMPLPLKHSPAFK*MGFEAS Trigger: GCTTGCTTCAAATCCCATTCATTTGAAAGCTGGTGA...GTGTTTCAATGGTAGGGGCATTAAGAGGGTACTGGGACAAAAATGATCAGAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR GCA 90 bp | GGGATTCAGAGGAACTCCCTGGCTCAAGTCGATACTGAAATGCTTGTTTGTCTATTTCACAGATGTTGCTaGAGATCTCTTATTAATCCA | + |
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Preference number: 2 (lower is better) Translates to: GIQRNSLAQVDTEMLVCLFHRCC*RSLINP Trigger: TGGATTAATAAGAGATCTGCAGCAACATCTGTGAAA...TAGACAAACAAGCATTTCAGTATCGACTTGAGCCAGGGAGTTCCTCTGAATCCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CCA 90 bp | TCTGGTATTACCTTGTGCTGGATAGTTTTTGTCAACTTGAAACATGCTAAAATCGCACATCTCAAGTGCTaGGATTCAGAGGAACTCCCT | + |
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Preference number: 2 (lower is better) Translates to: SGITLCWIVFVNLKHAKIAHLKC*DSEELP Trigger: AGGGAGTTCCTCTGAATCCCAGCACTTGAGATGTGC...GATTTTAGCATGTTTCAAGTTGACAAAAACTATCCAGCACAAGGTAATACCAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR GCA 90 bp | CAACTGACTTATCAGGTTGACACTAGCTTTAAGGGCAAAACTGTTCATTTACATTCCATCACCCAATGGTaGAAGGAAAGAATCAACTCC | + |
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Preference number: 2 (lower is better) Translates to: QLTYQVDTSFKGKTVHLHSITQW*KERINS Trigger: GGAGTTGATTCTTTCCTTGCACCATTGGGTGATGGA...ATGTAAATGAACAGTTTTGCCCTTAAAGCTAGTGTCAACCTGATAAGTCAGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR GCA 90 bp | TTTGTCCTGACCTTCTTTGATGATTGTGATGGAAATGTAAGCCAAATAAACCCTCTATCTGTAAAACTGTaGTATTACCTCCTCTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: FVLTFFDDCDGNVSQINPLSVKL*YYLLSR Trigger: CCTGGAGAGGAGGTAATAGCACAGTTTTACAGATAG...AGGGTTTATTTGGCTTACATTTCCATCACAATCATCAAAGAAGGTCAGGACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CCA 90 bp | TCTGGTATTACCTTGTGCTGGATAGTTTTTGTCAACTTGAAACATGCTAAAATCTTCAGAGGAACTCCCTaGCTCAAGTCGATACTGAAA | + |
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Preference number: 2 (lower is better) Translates to: SGITLCWIVFVNLKHAKIFRGTP*LKSILK Trigger: TTTCAGTATCGACTTGAGCCAGGGAGTTCCTCTGAA...GATTTTAGCATGTTTCAAGTTGACAAAAACTATCCAGCACAAGGTAATACCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR TCA 90 bp | TTTGTCCTGACCTTCTTTGATGATTGTGATGGAAATGTAAGCCAAATAAACCCTTTCCTATCAGACTCTTaGGATAAAACCATCCATTCA | + |
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Preference number: 2 (lower is better) Translates to: FVLTFFDDCDGNVSQINPFLSDS*DKTIHS Trigger: TGAATGGATGGTTTTATCTCAAGAGTCTGATAGGAA...AGGGTTTATTTGGCTTACATTTCCATCACAATCATCAAAGAAGGTCAGGACAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CAA 90 bp | GAGAGCAAGCCAGTGAGCAGCATCTATATCAGCTCCTGCCTCCAGGTTCCTGCCTCAGTGGTCACACACTaGCCTAACATACACAAGGCG | + |
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Preference number: 3 (lower is better) Translates to: ESKPVSSIYISSCLQVPASVVTH*PNIHKA Trigger: CGCCTTGTGTATGTTAGGCAAGTGTGTGACCACTGA...GGCAGGAACCTGGAGGCAGGAGCTGATATAGATGCTGCTCACTGGCTTGCTCTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 72 bp | GATAAAGGTCTCACCACCAAGCCTGGCCACCTGACTTaGGGCTCCATCACCCAATGGTGCAAGGAAAGAATC | + |
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Preference number: 3 (lower is better) Translates to: DKGLTTKPGHLT*GSITQWCKERI Trigger: GATTCTTTCCTTGCACCATTGGGTGATGGAGCCTCAAGTCAGGTGGCCAGGCTTGGTGGTGAGACCTTTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 72 bp | AGGATGATAAAGGTCTCACCACCAAGCCTGGCCACCTaGCTTGAGGCTCCATCACCCAATGGTGCAAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: RMIKVSPPSLAT*LEAPSPNGARK Trigger: TTTCCTTGCACCATTGGGTGATGGAGCCTCAAGTCAGGTGGCCAGGCTTGGTGGTGAGACCTTTATCATCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR GCA 72 bp | ACTGTAAAGTCAAAGCCTGTCTGTGGTCTGTGCTGGTaGAGCCCTGTGGGACATTCTCCTCCAGAAAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: TVKSKPVCGLCW*SPVGHSPPEKQ Trigger: CTGCTTTTCTGGAGGAGAATGTCCCACAGGGCTGCACCAGCACAGACCACAGACAGGCTTTGACTTTACAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR GCA 72 bp | AAGCACACTGTAAAGTCAAAGCCTGTCTGTGGTCTGTaGTGGTGCAGCCCTGTGGGACATTCTCCTCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: KHTVKSKPVCGL*WCSPVGHSPPE Trigger: TTCTGGAGGAGAATGTCCCACAGGGCTGCACCAGCACAGACCACAGACAGGCTTTGACTTTACAGTGTGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR GCA 72 bp | GAGAGCAAGCCAGTGAGCAGCATCTATATCAGCTCCTaGCTCCAGGTTCCTGCCCTGTTTGAGGTTTTTGTC | + |
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Preference number: 3 (lower is better) Translates to: ESKPVSSIYISS*LQVPALFEVFV Trigger: GACAAAAACCTCAAACAGGGCAGGAACCTGGAGGCAGGAGCTGATATAGATGCTGCTCACTGGCTTGCTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CCA 72 bp | CACACTGTAAAGTCAAAGCCTGTCTGTGGTCTGTGCTaGTGCAGCCCTGTGGGACATTCTCCTCCAGAAAAG | + |
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Preference number: 3 (lower is better) Translates to: HTVKSKPVCGLC*CSPVGHSPPEK Trigger: CTTTTCTGGAGGAGAATGTCCCACAGGGCTGCACCAGCACAGACCACAGACAGGCTTTGACTTTACAGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 72 bp | GACATCAGGACATCCCAAATCTATAACACACATAGGTaGCAGCGCGGCCTGCAGATTGGTTGCCAACAGGCA | + |
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Preference number: 3 (lower is better) Translates to: DIRTSQIYNTHR*QRGLQIGCQQA Trigger: TGCCTGTTGGCAACCAATCTGCAGGCCGCGCTGTCACCTATGTGTGTTATAGATTTGGGATGTCCTGATGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 72 bp | TCTTCCATGTGGAACTGCCTTGGCCTAGTGTGCTATTaGGACACGACCTGCCATTCTAGTCCTGGGTTCTAT | + |
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Preference number: 3 (lower is better) Translates to: SSMWNCLGLVCY*DTTCHSSPGFY Trigger: ATAGAACCCAGGACTAGAATGGCAGGTCGTGTCTCAATAGCACACTAGGCCAAGGCAGTTCCACATGGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CCA 72 bp | CCAAAGGTGGGAGAACACACACATTGCTATGGTGGTTaGCAAAAGCACACTGTAAAGTCAAAGCCTGTCTGT | + |
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Preference number: 3 (lower is better) Translates to: PKVGEHTHCYGG*QKHTVKSKPVC Trigger: ACAGACAGGCTTTGACTTTACAGTGTGCTTTTGCCAACCACCATAGCAATGTGTGTGTTCTCCCACCTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 72 bp | TTGATAAACAGTTCTCTAGCTCAAGATGTCCTTGACTaGCTTCCTCATCCTGCTGCACATCTCAAGTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: LINSSLAQDVLD*LPHPAAHLKCW Trigger: CCAGCACTTGAGATGTGCAGCAGGATGAGGAAGTCAGTCAAGGACATCTTGAGCTAGAGAACTGTTTATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CCA 72 bp | TGCACATCTCAAGTGCTGGGATTCAGAGGAACTCCCTaGCTCAAGTCGATACTGAAATGCTTGTTTGTCTAT | + |
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Preference number: 3 (lower is better) Translates to: CTSQVLGFRGTP*LKSILKCLFVY Trigger: ATAGACAAACAAGCATTTCAGTATCGACTTGAGCCAGGGAGTTCCTCTGAATCCCAGCACTTGAGATGTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CAA 90 bp | TATTCTGATCATTTTTGTCCCAGTACCCTCTTAATGCCCCTACCATTGAAACACGGGAGAACACACACATaGCTATGGTGGTTGGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: YSDHFCPSTLLMPLPLKHGRTHT*LWWLAK Trigger: TTTTGCCAACCACCATAGCAATGTGTGTGTTCTCCC...GTGTTTCAATGGTAGGGGCATTAAGAGGGTACTGGGACAAAAATGATCAGAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CAA 90 bp | GGAAATGTAAGCCAAATAAACCCTTTCCTCCCCAACTTGCTTTTGATCATCATACACTGCAAACTGGGCTaGGTGGTAAACTGTGAGCAT | + |
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Preference number: 3 (lower is better) Translates to: GNVSQINPFLPNLLLIIIHCKLG*VVNCEH Trigger: ATGCTCACAGTTTACCACCAAGCCCAGTTTGCAGTG...TATGATGATCAAAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTTACATTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 72 bp | TGGGATTCAGAGGAACTCCCTGGCTCAAGTCGATACTaGAATGCTTGTTTGTCTATCTGTAAAACTGTGCTA | + |
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Preference number: 3 (lower is better) Translates to: WDSEELPGSSRY*NACLSICKTVL Trigger: TAGCACAGTTTTACAGATAGACAAACAAGCATTTCAGTATCGACTTGAGCCAGGGAGTTCCTCTGAATCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 72 bp | AGTTTTGATAAACAGTTCTCTAGCTCAAGATGTCCTTaGCTGACTTCCTCATCCTGCTGCACATCTCAAGTG | + |
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Preference number: 3 (lower is better) Translates to: SFDKQFSSSRCP*LTSSSCCTSQV Trigger: CACTTGAGATGTGCAGCAGGATGAGGAAGTCAGTCAAGGACATCTTGAGCTAGAGAACTGTTTATCAAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR GCA 72 bp | CAAGGCTATAACATGCATGAAAAAGCTTCCATAGCCTaGTTCCTGGTCCTAAGCCTGAGAGAAATAAGACAA | + |
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Preference number: 3 (lower is better) Translates to: QGYNMHEKASIA*FLVLSLREIRQ Trigger: TTGTCTTATTTCTCTCAGGCTTAGGACCAGGAAGCAGGCTATGGAAGCTTTTTCATGCATGTTATAGCCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR GCA 72 bp | TCAAATGGGTTTATATGTAGTTTTCACAGATGTTGCTaGAGATCTCTTATTAATCCACGTGCTGTCCCGGCT | + |
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Preference number: 3 (lower is better) Translates to: SNGFICSFHRCC*RSLINPRAVPA Trigger: AGCCGGGACAGCACGTGGATTAATAAGAGATCTGCAGCAACATCTGTGAAAACTACATATAAACCCATTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CAA 90 bp | TATTCTGATCATTTTTGTCCCAGTACCCTCTTAATGCCCCTACCATTGAAACACGTCCACAGCTTTCAGTaGGTTAAATGTGAAATTCAG | + |
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Preference number: 3 (lower is better) Translates to: YSDHFCPSTLLMPLPLKHVHSFQ*VKCEIQ Trigger: CTGAATTTCACATTTAACCAACTGAAAGCTGTGGAC...GTGTTTCAATGGTAGGGGCATTAAGAGGGTACTGGGACAAAAATGATCAGAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 72 bp | CTTCCACCACTGCAAACTGGGCTTGGTGGTAAACTGTaGGCATCTTGTTTTATTATTGATGTAACCATGAAA | + |
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Preference number: 3 (lower is better) Translates to: LPPLQTGLGGKL*ASCFIIDVTMK Trigger: TTTCATGGTTACATCAATAATAAAACAAGATGCTCACAGTTTACCACCAAGCCCAGTTTGCAGTGGTGGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CAA 90 bp | ACTTATCAGGTTGACACTAGCTTTAAGGGCAAAACTGTTCATTTACATTGTCCATCAAATGAATGGGATTaGAAGCAAGCCTCAGCTGAT | + |
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Preference number: 3 (lower is better) Translates to: TYQVDTSFKGKTVHLHCPSNEWD*KQASAD Trigger: ATCAGCTGAGGCTTGCTTCAAATCCCATTCATTTGA...TGGACAATGTAAATGAACAGTTTTGCCCTTAAAGCTAGTGTCAACCTGATAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CAA 90 bp | TTTGTCCTGACCTTCTTTGATGATTGTGATGGAAATGTAAGCCAAATAAACCCTCTCCCCAACTTGCTTTaGATCATCATATTTCATGGC | + |
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Preference number: 3 (lower is better) Translates to: FVLTFFDDCDGNVSQINPLPNLL*IIIFHG Trigger: GCCATGAAATATGATGATCAAAAGCAAGTTGGGGAG...AGGGTTTATTTGGCTTACATTTCCATCACAATCATCAAAGAAGGTCAGGACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CAA 90 bp | TCTGGTATTACCTTGTGCTGGATAGTTTTTGTCAACTTGAAACATGCTAAAATCATTTCTAGCATCCACTaGGCTCACCTCTCACCTTTA | + |
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Preference number: 3 (lower is better) Translates to: SGITLCWIVFVNLKHAKIISSIH*AHLSPL Trigger: TAAAGGTGAGAGGTGAGCCAAGTGGATGCTAGAAAT...GATTTTAGCATGTTTCAAGTTGACAAAAACTATCCAGCACAAGGTAATACCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR-3UTR CAA 90 bp | TCTGGTATTACCTTGTGCTGGATAGTTTTTGTCAACTTGAAACATGCTAAAATCGGCTTCATTAGAGTTTaGATAAACAGTTCTCTAGCT | + |
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Preference number: 3 (lower is better) Translates to: SGITLCWIVFVNLKHAKIGFIRV*INSSLA Trigger: AGCTAGAGAACTGTTTATCAAAACTCTAATGAAGCC...GATTTTAGCATGTTTCAAGTTGACAAAAACTATCCAGCACAAGGTAATACCAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR TCA 72 bp | TTAAGCTTACCGTTGACCTTGAAACTAAACAATACTTaGAATCACCAGCTTTCAAATGAATGGGATTTGAAG | + |
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Preference number: 3 (lower is better) Translates to: LSLPLTLKLNNT*NHQLSNEWDLK Trigger: CTTCAAATCCCATTCATTTGAAAGCTGGTGATTTCAAGTATTGTTTAGTTTCAAGGTCAACGGTAAGCTTAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR GCA 90 bp | ACCAATCTGTTCTGTGACTTCCCCATGCTATGGCTCTTCCCCACACAGAGAGTATGGAAGGTGTGGGGCTaGTCAGCCCTCTCGCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: TNLFCDFPMLWLFPTQRVWKVWG*SALSLW Trigger: CCAGAGCGAGAGGGCTGAGCAGCCCCACACCTTCCA...TACTCTCTGTGTGGGGAAGAGCCATAGCATGGGGAAGTCACAGAACAGATTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR CCA 90 bp | GGGATTCAGAGGAACTCCCTGGCTCAAGTCGATACTGAAATGCTTGTTTGTCTAGCCGGGTGGAAGGTGTaGGGCTGCTCAGCCCTCTCG | + |
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Preference number: 4 (lower is better) Translates to: GIQRNSLAQVDTEMLVCLAGWKV*GCSALS Trigger: CGAGAGGGCTGAGCAGCCCCACACCTTCCACCCGGC...TAGACAAACAAGCATTTCAGTATCGACTTGAGCCAGGGAGTTCCTCTGAATCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR CCA 90 bp | GATAAAACCATCCATTCAAGCAGACATCCTTCCACCACTGCAAACTGGGCTTGGTGCAGCAGCGCCGGGTaGAAGGTGTGGGGCTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: DKTIHSSRHPSTTANWAWCSSAG*KVWGCS Trigger: TGAGCAGCCCCACACCTTCCACCCGGCGCTGCTGCA...CCAAGCCCAGTTTGCAGTGGTGGAAGGATGTCTGCTTGAATGGATGGTTTTATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CAA 72 bp | ATAAATCAGGGGGAGAGGATTTCAGTGGTCACACACTaGCCTAACATACACAAGGCGTTGGGCCGGGGCATG | + |
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Preference number: 4 (lower is better) Translates to: INQGERISVVTH*PNIHKALGRGM Trigger: CATGCCCCGGCCCAACGCCTTGTGTATGTTAGGCAAGTGTGTGACCACTGAAATCCTCTCCCCCTGATTTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR CCA 90 bp | ATTTCTTTAGGGGAAGGACTGAGAAACTCAGGCTCTGTTTCTAACGTAGATACTTCAGCCCTCTCGCTCTaGTCAGAGCAGAGCCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: ISLGEGLRNSGSVSNVDTSALSL*SEQSLA Trigger: GGCCAGGCTCTGCTCTGACCAGAGCGAGAGGGCTGA...AGTATCTACGTTAGAAACAGAGCCTGAGTTTCTCAGTCCTTCCCCTAAAGAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR TCA 90 bp | GATAAAACCATCCATTCAAGCAGACATCCTTCCACCACTGCAAACTGGGCTTGGTCTTGCTTCTCATTTTaGCGTGTGGTCCTTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: DKTIHSSRHPSTTANWAWSCFSF*RVVLAA Trigger: GGCAGCAAGGACCACACGTCAAAATGAGAAGCAAGA...CCAAGCCCAGTTTGCAGTGGTGGAAGGATGTCTGCTTGAATGGATGGTTTTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR CCA 90 bp | GGAAATGTAAGCCAAATAAACCCTTTCCTCCCCAACTTGCTTTTGATCATCATAGGTCAGAGCAGAGCCTaGCCCCGGGCACTTGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: GNVSQINPFLPNLLLIIIGQSRA*PRALAE Trigger: TTCTGCAAGTGCCCGGGGCCAGGCTCTGCTCTGACC...TATGATGATCAAAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTTACATTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CAA 72 bp | TGGTTGCCAACAGGCACCAATATTTCTAGCATCCACTaGGCTCACCTCTCACCTTTACCTGTGTTACGTCAT | + |
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Preference number: 4 (lower is better) Translates to: WLPTGTNISSIH*AHLSPLPVLRH Trigger: ATGACGTAACACAGGTAAAGGTGAGAGGTGAGCCAAGTGGATGCTAGAAATATTGGTGCCTGTTGGCAACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR GCA 90 bp | ATCTATATCAGCTCCTGCCTCCAGGTTCCTGCCCTGTTTGAGGTTTTTGTCCTGCAATTCATTTGTCGATaGTTCATATCTAAGCGGCTT | + |
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Preference number: 4 (lower is better) Translates to: IYISSCLQVPALFEVFVLQFICR*FISKRL Trigger: AAGCCGCTTAGATATGAAGCATCGACAAATGAATTG...CAGGACAAAAACCTCAAACAGGGCAGGAACCTGGAGGCAGGAGCTGATATAGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CAA 72 bp | AACATGCTAAAATCATCTGAGAGGAAGGAACCTCAATaGAGAAAATTCCTCCCTAAGACTGGGCTCTCGGCA | + |
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Preference number: 4 (lower is better) Translates to: NMLKSSERKEPQ*RKFLPKTGLSA Trigger: TGCCGAGAGCCCAGTCTTAGGGAGGAATTTTCTCAATTGAGGTTCCTTCCTCTCAGATGATTTTAGCATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR GCA 90 bp | TATTCTGATCATTTTTGTCCCAGTACCCTCTTAATGCCCCTACCATTGAAACACACGTGTGGTCCTTGCTaGCTGTGGTATCATATTAGG | + |
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Preference number: 4 (lower is better) Translates to: YSDHFCPSTLLMPLPLKHTCGPC*LWYHIR Trigger: CCTAATATGATACCACAGGCAGCAAGGACCACACGT...GTGTTTCAATGGTAGGGGCATTAAGAGGGTACTGGGACAAAAATGATCAGAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR CCA 90 bp | TTTGTCCTGACCTTCTTTGATGATTGTGATGGAAATGTAAGCCAAATAAACCCTGGTCCTTGCTGCCTGTaGTATCATATTAGGGATCCC | + |
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Preference number: 4 (lower is better) Translates to: FVLTFFDDCDGNVSQINPGPCCL*YHIRDP Trigger: GGGATCCCTAATATGATACCACAGGCAGCAAGGACC...AGGGTTTATTTGGCTTACATTTCCATCACAATCATCAAAGAAGGTCAGGACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CAA 72 bp | TGTCTTCTTGCTGACCCAATGGGCTTCATTAGAGTTTaGATAAACAGTTCTCTAGCTCAAGATGTCCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: CLLADPMGFIRV*INSSLAQDVLD Trigger: GTCAAGGACATCTTGAGCTAGAGAACTGTTTATCAAAACTCTAATGAAGCCCATTGGGTCAGCAAGAAGACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CAA 72 bp | GTAAGCCAAATAAACCCTTTCCTCCCCAACTTGCTTTaGATCATCATATTTCATGGCAGCAATAGAAACCCC | + |
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Preference number: 4 (lower is better) Translates to: VSQINPFLPNLL*IIIFHGSNRNP Trigger: GGGGTTTCTATTGCTGCCATGAAATATGATGATCAAAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR GCA 90 bp | CAACTGACTTATCAGGTTGACACTAGCTTTAAGGGCAAAACTGTTCATTTACATTTGACGTGTGGTCCTTaGTGCCTGTGGTATCATATT | + |
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Preference number: 4 (lower is better) Translates to: QLTYQVDTSFKGKTVHLHLTCGP*CLWYHI Trigger: AATATGATACCACAGGCAGCAAGGACCACACGTCAA...ATGTAAATGAACAGTTTTGCCCTTAAAGCTAGTGTCAACCTGATAAGTCAGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CAA 72 bp | GGAAATGTAAGCCAAATAAACCCTTTCCTCCCCAACTaGCTTTTGATCATCATATTTCATGGCAGCAATAGA | + |
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Preference number: 4 (lower is better) Translates to: GNVSQINPFLPN*LLIIIFHGSNR Trigger: TCTATTGCTGCCATGAAATATGATGATCAAAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTTACATTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| 3UTR CAA 72 bp | ACTATTTTTATTAAACATGAAGGCAAACGTGCTATTTaGCGCCTACTACTACAGCCATTATCTGTTAGGTTA | + |
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Preference number: 4 (lower is better) Translates to: TIFIKHEGKRAI*RLLLQPLSVRL Trigger: TAACCTAACAGATAATGGCTGTAGTAGTAGGCGCAAAATAGCACGTTTGCCTTCATGTTTAATAAAAATAGT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS GCA 90 bp | AGAGCAGAGCCTGGCCCCGGGCACTTGCAGAAACCTCCCGGCGACTaGAGACAGTGCGCGGAGCCTCCGCAGCGCCGGGGCGAGCCTGCG | + |
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Preference number: 5 (lower is better) Translates to: RAEPGPGHLQKPPGD*RQCAEPPQRRGEPA Trigger: CGCAGGCTCGCCCCGGCGCTGCGGAGGCTCCGCGCACTGTCTGCAGTCGCCGGGAGGTTTCTGCAAGTGCCCGGGGCCAGGCTCTGCTCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS GCA 90 bp | TCAGCCCTCTCGCTCTGGTCAGAGCAGAGCCTGGCCCCGGGCACTTaGAGAAACCTCCCGGCGACTGCAGACAGTGCGCGGAGCCTCCGC | + |
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Preference number: 5 (lower is better) Translates to: SALSLWSEQSLAPGT*RNLPATADSARSLR Trigger: GCGGAGGCTCCGCGCACTGTCTGCAGTCGCCGGGAGGTTTCTGCAAGTGCCCGGGGCCAGGCTCTGCTCTGACCAGAGCGAGAGGGCTGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR CAA 90 bp | GGGATTCAGAGGAACTCCCTGGCTCAAGTCGATACTGAAATGCTTGTTTGTCTATTGCTCAGCTTCTTCTaGCTTCTCATTTTGACGTGT | + |
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Preference number: 5 (lower is better) Translates to: GIQRNSLAQVDTEMLVCLLLSFF*LLILTC Trigger: ACACGTCAAAATGAGAAGCAAGAAGAAGCTGAGCAA...TAGACAAACAAGCATTTCAGTATCGACTTGAGCCAGGGAGTTCCTCTGAATCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR CAA 90 bp | TATTCTGATCATTTTTGTCCCAGTACCCTCTTAATGCCCCTACCATTGAAACACTTCTTGCTTCTCATTTaGACGTGTGGTCCTTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: YSDHFCPSTLLMPLPLKHFLLLI*TCGPCC Trigger: GCAGCAAGGACCACACGTCAAAATGAGAAGCAAGAA...GTGTTTCAATGGTAGGGGCATTAAGAGGGTACTGGGACAAAAATGATCAGAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS-3UTR CAA 90 bp | TCTGGTATTACCTTGTGCTGGATAGTTTTTGTCAACTTGAAACATGCTAAAATCTTTGACGTGTGGTCCTaGCTGCCTGTGGTATCATAT | + |
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Preference number: 5 (lower is better) Translates to: SGITLCWIVFVNLKHAKIFDVWS*LPVVSY Trigger: ATATGATACCACAGGCAGCAAGGACCACACGTCAAA...GATTTTAGCATGTTTCAAGTTGACAAAAACTATCCAGCACAAGGTAATACCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS GCA 72 bp | CCTGGCCCCGGGCACTTGCAGAAACCTCCCGGCGACTaGAGACAGTGCGCGGAGCCTCCGCAGCGCCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: PGPGHLQKPPGD*RQCAEPPQRRG Trigger: GCCCCGGCGCTGCGGAGGCTCCGCGCACTGTCTGCAGTCGCCGGGAGGTTTCTGCAAGTGCCCGGGGCCAGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS CAA 90 bp | CTCAGCCCTCTCGCTCTGGTCAGAGCAGAGCCTGGCCCCGGGCACTaGCAGAAACCTCCCGGCGACTGCAGACAGTGCGCGGAGCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: LSPLALVRAEPGPGH*QKPPGDCRQCAEPP Trigger: CGGAGGCTCCGCGCACTGTCTGCAGTCGCCGGGAGGTTTCTGCAAGTGCCCGGGGCCAGGCTCTGCTCTGACCAGAGCGAGAGGGCTGAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS GCA 72 bp | TCGCTCTGGTCAGAGCAGAGCCTGGCCCCGGGCACTTaGAGAAACCTCCCGGCGACTGCAGACAGTGCGCGG | + |
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Preference number: 6 (lower is better) Translates to: SLWSEQSLAPGT*RNLPATADSAR Trigger: CCGCGCACTGTCTGCAGTCGCCGGGAGGTTTCTGCAAGTGCCCGGGGCCAGGCTCTGCTCTGACCAGAGCGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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| CDS CAA 72 bp | CTCGCTCTGGTCAGAGCAGAGCCTGGCCCCGGGCACTaGCAGAAACCTCCCGGCGACTGCAGACAGTGCGCG | + |
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Preference number: 6 (lower is better) Translates to: LALVRAEPGPGH*QKPPGDCRQCA Trigger: CGCGCACTGTCTGCAGTCGCCGGGAGGTTTCTGCAAGTGCCCGGGGCCAGGCTCTGCTCTGACCAGAGCGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053386.6 |
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