Pregenerated sensors for PYROXD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041671Ensembl transcript IDs: ENSMUST00000041852.8
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGAGTGCTGTGGCAGCCTCTGGGAAGTGCATGTGCTCTTCCGAGTaGCTACTCTGCTGGCACGGACTCACCCTCAGCCACACCCTCTTT | + |
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Preference number: 1 (lower is better) Translates to: LSAVAASGKCMCSSE*LLCWHGLTLSHTLF Trigger: AAAGAGGGTGTGGCTGAGGGTGAGTCCGTGCCAGCAGAGTAGGCACTCGGAAGAGCACATGCACTTCCCAGAGGCTGCCACAGCACTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR GCA 90 bp | TTCCAACATCCAGTCTGGTGTCTGCATTCTCTACTTGAGTGCCCATaGACTCCGTGTGGTTATGTTTCCCCATGTACTTTCTTTTCTCTT | + |
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Preference number: 1 (lower is better) Translates to: FQHPVWCLHSLLECP*TPCGYVSPCTFFSL Trigger: AAGAGAAAAGAAAGTACATGGGGAAACATAACCACACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGACACCAGACTGGATGTTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR TCA 90 bp | CTTTATTTCTTTCCAACATCCAGTCTGGTGTCTGCATTCTCTACTTaGGTGCCCATGCACTCCGTGTGGTTATGTTTCCCCATGTACTTT | + |
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Preference number: 1 (lower is better) Translates to: LYFFPTSSLVSAFST*VPMHSVWLCFPMYF Trigger: AAAGTACATGGGGAAACATAACCACACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGACACCAGACTGGATGTTGGAAAGAAATAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR GCA 90 bp | ATTTCTTTCCAACATCCAGTCTGGTGTCTGCATTCTCTACTTGAGTaGCCATGCACTCCGTGTGGTTATGTTTCCCCATGTACTTTCTTT | + |
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Preference number: 1 (lower is better) Translates to: ISFQHPVWCLHSLLE*PCTPCGYVSPCTFF Trigger: AAAGAAAGTACATGGGGAAACATAACCACACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGACACCAGACTGGATGTTGGAAAGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR GCA 90 bp | TCTGAAGAATTTTCTTTATTTCTTTCCAACATCCAGTCTGGTGTCTaGATTCTCTACTTGAGTGCCCATGCACTCCGTGTGGTTATGTTT | + |
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Preference number: 1 (lower is better) Translates to: SEEFSLFLSNIQSGV*ILYLSAHALRVVMF Trigger: AAACATAACCACACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGACACCAGACTGGATGTTGGAAAGAAATAAAGAAAATTCTTCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR CCA 90 bp | TTAACTGAGTGCTGTGGCAGCCTCTGGGAAGTGCATGTGCTCTTCCGAGTGCCTTTCCAACATCCAGTCTaGTGTCTGCATTCTCTACTT | + |
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Preference number: 2 (lower is better) Translates to: LTECCGSLWEVHVLFRVPFQHPV*CLHSLL Trigger: AAGTAGAGAATGCAGACACCAGACTGGATGTTGGAA...AGGCACTCGGAAGAGCACATGCACTTCCCAGAGGCTGCCACAGCACTCAGTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR TCA 90 bp | ACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAAACACAGACGACAGCAGCCTCCTaGGGCCGCAGCCTGACTTTG | + |
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Preference number: 2 (lower is better) Translates to: TEFCELSSDIYGKNVKTQTTAAS*GRSLTL Trigger: CAAAGTCAGGCTGCGGCCTCAGGAGGCTGCTGTCGT...CTGTGTTTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCCGACATCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCATGTGCTCTTCCGAGTaGCTACTCTGCTGGCACGGA | + |
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Preference number: 2 (lower is better) Translates to: LPTSMVKMSKHSLLCRGGMCSSE*LLCWHG Trigger: TCCGTGCCAGCAGAGTAGGCACTCGGAAGAGCACAT...GCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGATGTCGGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCCGACATCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCAAGCCCTTAACTGAGTaGTGTGGCAGCCTCTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: LPTSMVKMSKHSLLCRGGKPLTE*CGSLWE Trigger: TTCCCAGAGGCTGCCACAGCACTCAGTTAAGGGCTT...GCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGATGTCGGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR CAA 90 bp | TCTTTATTTCTTTCCAACATCCAGTCTGGTGTCTGCATTCTCTACTaGAGTGCCCATGCACTCCGTGTGGTTATGTTTCCCCATGTACTT | + |
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Preference number: 2 (lower is better) Translates to: SLFLSNIQSGVCILY*SAHALRVVMFPHVL Trigger: AAGTACATGGGGAAACATAACCACACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGACACCAGACTGGATGTTGGAAAGAAATAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR TCA 90 bp | AGGACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAAACATCTGCATTCTCTACTTaGGTGCCCATGCACTCCGTG | + |
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Preference number: 2 (lower is better) Translates to: RTEFCELSSDIYGKNVKTSAFST*VPMHSV Trigger: CACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGA...TGTTTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR TCA 90 bp | AGGAGGACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAACTAGCTGTCGTCTTCTaGCGTGACTCTCCTTTAAAG | + |
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Preference number: 2 (lower is better) Translates to: RRTEFCELSSDIYGKNVKLAVVF*RDSPLK Trigger: CTTTAAAGGAGAGTCACGTCAGAAGACGACAGCTAG...TTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGTCCTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR CCA 90 bp | AGGACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAAACACCCATGCACTCCGTGTaGTTATGTTTCCCCATGTAC | + |
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Preference number: 2 (lower is better) Translates to: RTEFCELSSDIYGKNVKTPMHSV*LCFPMY Trigger: GTACATGGGGAAACATAACCACACGGAGTGCATGGG...TGTTTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR TCA 90 bp | TCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCAAGCCCTTAGCTGAGCAATGTAGATaGCTTCTAGTGAGAAGAGTT | + |
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Preference number: 2 (lower is better) Translates to: SMVKMSKHSLLCRGGKPLAEQCR*LLVRRV Trigger: AACTCTTCTCACTAGAAGTCATCTACATTGCTCAGC...TAAGGGCTTGCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR TCA 90 bp | CTTCCGACATCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCTCCTTTCCAAATGGGTaGCATTTTAAGCTGAGCAAT | + |
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Preference number: 2 (lower is better) Translates to: LPTSMVKMSKHSLLCRGGSFPNG*HFKLSN Trigger: ATTGCTCAGCTTAAAATGTCACCCATTTGGAAAGGA...GCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGATGTCGGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR CCA 90 bp | TCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCAAGCCCTTACTGTATGTTCATGTCTaGGTCATTTTTATAATCTGC | + |
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Preference number: 2 (lower is better) Translates to: SMVKMSKHSLLCRGGKPLLYVHV*VIFIIC Trigger: GCAGATTATAAAAATGACCCAGACATGAACATACAG...TAAGGGCTTGCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR TCA 72 bp | ACACAGTCTGCTTTGCAGAGGTGGCAAGCCCTTAACTaGGTGCTGTGGCAGCCTCTGGGAAGTGCATGTGCT | + |
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Preference number: 3 (lower is better) Translates to: TQSALQRWQALN*VLWQPLGSACA Trigger: AGCACATGCACTTCCCAGAGGCTGCCACAGCACTCAGTTAAGGGCTTGCCACCTCTGCAAAGCAGACTGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR GCA 72 bp | AGTCTGCTTTGCAGAGGTGGCAAGCCCTTAACTGAGTaGTGTGGCAGCCTCTGGGAAGTGCATGTGCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: SLLCRGGKPLTE*CGSLWEVHVLF Trigger: GAAGAGCACATGCACTTCCCAGAGGCTGCCACAGCACTCAGTTAAGGGCTTGCCACCTCTGCAAAGCAGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR CAA 90 bp | TTAACTGAGTGCTGTGGCAGCCTCTGGGAAGTGCATGTGCTCTTCCGAGTGCCTGAGGAGCTGGTGTATTaGTATGAGTCAAGGTTTATC | + |
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Preference number: 3 (lower is better) Translates to: LTECCGSLWEVHVLFRVPEELVY*YESRFI Trigger: GATAAACCTTGACTCATACAAATACACCAGCTCCTC...AGGCACTCGGAAGAGCACATGCACTTCCCAGAGGCTGCCACAGCACTCAGTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR TCA 72 bp | TTTCCAACATCCAGTCTGGTGTCTGCATTCTCTACTTaGGTGCCCATGCACTCCGTGTGGTTATGTTTCCCC | + |
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Preference number: 3 (lower is better) Translates to: FPTSSLVSAFST*VPMHSVWLCFP Trigger: GGGGAAACATAACCACACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGACACCAGACTGGATGTTGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR GCA 72 bp | CCAGTCTGGTGTCTGCATTCTCTACTTGAGTGCCCATaGACTCCGTGTGGTTATGTTTCCCCATGTACTTTC | + |
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Preference number: 3 (lower is better) Translates to: PVWCLHSLLECP*TPCGYVSPCTF Trigger: GAAAGTACATGGGGAAACATAACCACACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGACACCAGACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR GCA 72 bp | CAACATCCAGTCTGGTGTCTGCATTCTCTACTTGAGTaGCCATGCACTCCGTGTGGTTATGTTTCCCCATGT | + |
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Preference number: 3 (lower is better) Translates to: QHPVWCLHSLLE*PCTPCGYVSPC Trigger: ACATGGGGAAACATAACCACACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGACACCAGACTGGATGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR-3UTR CAA 90 bp | AGGAGGACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAACCATTGGCCACTCTCTaGCAGGGTGCACTGTCTGAA | + |
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Preference number: 3 (lower is better) Translates to: RRTEFCELSSDIYGKNVKPLATL*QGALSE Trigger: TTCAGACAGTGCACCCTGCAAGAGAGTGGCCAATGG...TTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGTCCTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR GCA 72 bp | ACATCTATGGTAAAAATGTCAAAACACAGTCTGCTTTaGAGAGGTGGCAAGCCCTTAACTGAGTGCTGTGGC | + |
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Preference number: 3 (lower is better) Translates to: TSMVKMSKHSLL*RGGKPLTECCG Trigger: GCCACAGCACTCAGTTAAGGGCTTGCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGATGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR TCA 72 bp | ATCGTCAACTCTAGAGGAGGAGTGTTCATCTGCAAATaGGTCATTAAACGAGTTCATCTGAAGAATTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: IVNSRGGVFICK*VIKRVHLKNFL Trigger: AAGAAAATTCTTCAGATGAACTCGTTTAATGACTCATTTGCAGATGAACACTCCTCCTCTAGAGTTGACGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR CAA 72 bp | CGGCTGAAGTTACCAGGGTACCCATTGGCCACTCTCTaGCAGGGTGCACTGTCTGAAGCTCGTCAGGTGGAA | + |
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Preference number: 4 (lower is better) Translates to: RLKLPGYPLATL*QGALSEARQVE Trigger: TTCCACCTGACGAGCTTCAGACAGTGCACCCTGCAAGAGAGTGGCCAATGGGTACCCTGGTAACTTCAGCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR GCA 90 bp | AAGTGTGTCAGCAAGAATGGCCTGCATATTCTAAGTAAATCACGACAGCAGCCTCACAACCTCATCTGCTaGCAGACTGGACTCGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: KCVSKNGLHILSKSRQQPHNLIC*QTGLGC Trigger: GCAGCCGAGTCCAGTCTGGCAGCAGATGAGGTTGTG...AGGCTGCTGTCGTGATTTACTTAGAATATGCAGGCCATTCTTGCTGACACACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR CCA 90 bp | ACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAAACACAGGCCTCCGTGCCAGTCTaGTCCAAGGGCACTGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: TEFCELSSDIYGKNVKTQASVPV*SKGTAH Trigger: GTGGGCAGTGCCCTTGGACCAGACTGGCACGGAGGC...CTGTGTTTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR CAA 72 bp | CTTTCCAACATCCAGTCTGGTGTCTGCATTCTCTACTaGAGTGCCCATGCACTCCGTGTGGTTATGTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: LSNIQSGVCILY*SAHALRVVMFP Trigger: GGGAAACATAACCACACGGAGTGCATGGGCACTCAAGTAGAGAATGCAGACACCAGACTGGATGTTGGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR TCA 90 bp | AGGAGGACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAACTTCCTCTGGGAAACTaGCAGCCAGCTGCTCGGCAC | + |
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Preference number: 4 (lower is better) Translates to: RRTEFCELSSDIYGKNVKLPLGN*QPAARH Trigger: GTGCCGAGCAGCTGGCTGTCAGTTTCCCAGAGGAAG...TTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGTCCTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR TCA 90 bp | AAGTGTGTCAGCAAGAATGGCCTGCATATTCTAAGTAAATCACGACAGCAGCCTCACGACCGTCTTCTGTaGAGATGCAATGGTCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: KCVSKNGLHILSKSRQQPHDRLL*RCNGLH Trigger: GTGAAGACCATTGCATCTTCACAGAAGACGGTCGTG...AGGCTGCTGTCGTGATTTACTTAGAATATGCAGGCCATTCTTGCTGACACACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR GCA 90 bp | AGTTGCTGTTATAATTCAGATAAAACAGTCCTCAGCACCAAGTGTGTCAGCAAGCATCAACTCATGGTCTaGGCCCAGGCCTTGTGCGTT | + |
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Preference number: 4 (lower is better) Translates to: SCCYNSDKTVLSTKCVSKHQLMV*AQALCV Trigger: AACGCACAAGGCCTGGGCGCAGACCATGAGTTGATG...CTTGCTGACACACTTGGTGCTGAGGACTGTTTTATCTGAATTATAACAGCAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR GCA 90 bp | AGGAGGACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAATGCGCCCAGGCCTTGTaGGTTGTATTTTCCCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: RRTEFCELSSDIYGKNVKCAQAL*VVFSQQ Trigger: TTGCTGGGAAAATACAACGCACAAGGCCTGGGCGCA...TTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGTCCTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR CCA 90 bp | CTTCCGACATCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCCATACTCTTGTCCTCTaGTGCACCTCAGCATCAACT | + |
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Preference number: 4 (lower is better) Translates to: LPTSMVKMSKHSLLCRGGHTLVL*CTSAST Trigger: AGTTGATGCTGAGGTGCACCAGAGGACAAGAGTATG...GCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGATGTCGGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR GCA 90 bp | TCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCAAGCCCTTAACTCTTGTCCTCTGGTaGACCTCAGCATCAACTCAT | + |
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Preference number: 4 (lower is better) Translates to: SMVKMSKHSLLCRGGKPLTLVLW*TSASTH Trigger: ATGAGTTGATGCTGAGGTGCACCAGAGGACAAGAGT...TAAGGGCTTGCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR GCA 90 bp | AGGACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAAACACTAGCTCCAGAGCAATaGCACCATTCCCGACAATCA | + |
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Preference number: 4 (lower is better) Translates to: RTEFCELSSDIYGKNVKTLAPEQ*HHSRQS Trigger: TGATTGTCGGGAATGGTGGCATTGCTCTGGAGCTAG...TGTTTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR CCA 90 bp | AAGTGTGTCAGCAAGAATGGCCTGCATATTCTAAGTAAATCACGACAGCAGCCTAGAATGTATTCCCAATaGCGTTATCCTTTATGGCCC | + |
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Preference number: 4 (lower is better) Translates to: KCVSKNGLHILSKSRQQPRMYSQ*RYPLWP Trigger: GGGCCATAAAGGATAACGCCATTGGGAATACATTCT...AGGCTGCTGTCGTGATTTACTTAGAATATGCAGGCCATTCTTGCTGACACACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR CCA 90 bp | GTCCTCAGCACCAAGTGTGTCAGCAAGAATGGCCTGCATATTCTAAGTAAATCAGTAACTGACTTATGGTaGTCCTTTGGAAAAGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: VLSTKCVSKNGLHILSKSVTDLW*SFGKAK Trigger: CTTGGCTTTTCCAAAGGACCACCATAAGTCAGTTAC...TGATTTACTTAGAATATGCAGGCCATTCTTGCTGACACACTTGGTGCTGAGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR GCA 90 bp | CTTCCGACATCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCTATCCTCCTGGCTTTTaGAAGCTCTTTCTGAAATTC | + |
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Preference number: 4 (lower is better) Translates to: LPTSMVKMSKHSLLCRGGYPPGF*KLFLKF Trigger: GAATTTCAGAAAGAGCTTGCAAAAGCCAGGAGGATA...GCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGATGTCGGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR CCA 90 bp | CTTCCGACATCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCTTCCAGCATAGTACCTaGCTGTTCTTCAACATCAAA | + |
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Preference number: 4 (lower is better) Translates to: LPTSMVKMSKHSLLCRGGFQHST*LFFNIK Trigger: TTTGATGTTGAAGAACAGCCAGGTACTATGCTGGAA...GCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGATGTCGGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR CCA 90 bp | AGGAGGACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAAGCTGTAACTGACTTATaGTGGTCCTTTGGAAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: RRTEFCELSSDIYGKNVKAVTDL*WSFGKA Trigger: GGCTTTTCCAAAGGACCACCATAAGTCAGTTACAGC...TTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGTCCTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR CCA 90 bp | TCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCAAGCCCTTACTTATGGTGGTCCTTTaGAAAAGCCAAGGACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: SMVKMSKHSLLCRGGKPLLMVVL*KSQGLF Trigger: AAAAAGTCCTTGGCTTTTCCAAAGGACCACCATAAG...TAAGGGCTTGCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR TCA 90 bp | ACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAAACACAGTTTATCAGCTGTAACTaGCTTATGGTGGTCCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: TEFCELSSDIYGKNVKTQFISCN*LMVVLW Trigger: CCAAAGGACCACCATAAGTCAGTTACAGCTGATAAA...CTGTGTTTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR GCA 90 bp | TCTATGGTAAAAATGTCAAAACACAGTCTGCTTTGCAGAGGTGGCAAGCCCTTATCTTCACTTTTCAACTaGTTTACTCCAGATTCGATG | + |
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Preference number: 4 (lower is better) Translates to: SMVKMSKHSLLCRGGKPLSSLFN*FTPDSM Trigger: CATCGAATCTGGAGTAAAGCAGTTGAAAAGTGAAGA...TAAGGGCTTGCCACCTCTGCAAAGCAGACTGTGTTTTGACATTTTTACCATAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR CCA 90 bp | AGTTGCTGTTATAATTCAGATAAAACAGTCCTCAGCACCAAGTGTGTCAGCAAGCAATCATTATCCTCCTaGCTTTTGCAAGCTCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: SCCYNSDKTVLSTKCVSKQSLSS*LLQALS Trigger: AGAAAGAGCTTGCAAAAGCCAGGAGGATAATGATTG...CTTGCTGACACACTTGGTGCTGAGGACTGTTTTATCTGAATTATAACAGCAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR TCA 90 bp | AGGACCGAATTCTGTGAACTGTCTTCCGACATCTATGGTAAAAATGTCAAAACACTGATTTTTCAGACATaGGCTTGGAAGTCAGAAACT | + |
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Preference number: 4 (lower is better) Translates to: RTEFCELSSDIYGKNVKTLIFQT*AWKSET Trigger: AGTTTCTGACTTCCAAGCTCATGTCTGAAAAATCAG...TGTTTTGACATTTTTACCATAGATGTCGGAAGACAGTTCACAGAATTCGGTCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| 3UTR CAA 72 bp | AAAGAAAACTTGATGATGCTTGAGTGTCACGTAATATaGTACAATGTAACTGTTCTGTATGTTCATGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: KENLMMLECHVI*YNVTVLYVHVW Trigger: CCAGACATGAACATACAGAACAGTTACATTGTACAATATTACGTGACACTCAAGCATCATCAAGTTTTCTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS-3UTR CAA 90 bp | AAGTGTGTCAGCAAGAATGGCCTGCATATTCTAAGTAAATCACGACAGCAGCCTTTTTCAGACATGAGCTaGGAAGTCAGAAACTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: KCVSKNGLHILSKSRQQPFSDMS*EVRNSA Trigger: AGCAGAGTTTCTGACTTCCAAGCTCATGTCTGAAAA...AGGCTGCTGTCGTGATTTACTTAGAATATGCAGGCCATTCTTGCTGACACACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS CCA 90 bp | AGTTTCTTATATACAAATTCACGACCGTCTTCTGTGAAGATGCAATaGTCTTCACTTTTCAACTGCTTTACTCCAGATTCGATGACCTTA | + |
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Preference number: 5 (lower is better) Translates to: SFLYTNSRPSSVKMQ*SSLFNCFTPDSMTL Trigger: TAAGGTCATCGAATCTGGAGTAAAGCAGTTGAAAAGTGAAGACCATTGCATCTTCACAGAAGACGGTCGTGAATTTGTATATAAGAAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS GCA 72 bp | CCCATCTGCCGGGCCTGTGTCCACAACCTCATCTGCTaGCAGACTGGACTCGGCTGCCAGCACGCAGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: PICRACVHNLIC*QTGLGCQHAVQ Trigger: CTGCACTGCGTGCTGGCAGCCGAGTCCAGTCTGGCAGCAGATGAGGTTGTGGACACAGGCCCGGCAGATGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS GCA 72 bp | TACCCCATCTGCCGGGCCTGTGTCCACAACCTCATCTaGTGCCAGACTGGACTCGGCTGCCAGCACGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: YPICRACVHNLI*CQTGLGCQHAV Trigger: CACTGCGTGCTGGCAGCCGAGTCCAGTCTGGCAGCAGATGAGGTTGTGGACACAGGCCCGGCAGATGGGGTA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS CCA 72 bp | TTCAGTTCCTTTCAAAGCCAAGCCTCCGTGCCAGTCTaGTCCAAGGGCACTGCCCACATAATCAGCTTTAGA | + |
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Preference number: 6 (lower is better) Translates to: FSSFQSQASVPV*SKGTAHIISFR Trigger: TCTAAAGCTGATTATGTGGGCAGTGCCCTTGGACCAGACTGGCACGGAGGCTTGGCTTTGAAAGGAACTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS GCA 72 bp | CACAGCCTTCAATTTCATACGCTAGCTCCAGAGCAATaGCACCATTCCCGACAATCATTATCCTCCTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: HSLQFHTLAPEQ*HHSRQSLSSWL Trigger: AAGCCAGGAGGATAATGATTGTCGGGAATGGTGGCATTGCTCTGGAGCTAGCGTATGAAATTGAAGGCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS CCA 72 bp | ACTCTGCTGCACCCGCGTCAAAGAATGTATTCCCAATaGCGTTATCCTTTATGGCCCAAACTACTTCACAGC | + |
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Preference number: 6 (lower is better) Translates to: TLLHPRQRMYSQ*RYPLWPKLLHS Trigger: GCTGTGAAGTAGTTTGGGCCATAAAGGATAACGCCATTGGGAATACATTCTTTGACGCGGGTGCAGCAGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS CAA 72 bp | CATGCGTCCATTCTGCATAACGACTTTGACATACTCTaGTCCTCTGGTGCACCTCAGCATCAACTCATGGTC | + |
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Preference number: 6 (lower is better) Translates to: HASILHNDFDIL*SSGAPQHQLMV Trigger: GACCATGAGTTGATGCTGAGGTGCACCAGAGGACAAGAGTATGTCAAAGTCGTTATGCAGAATGGACGCATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS GCA 72 bp | TTTTTCAGACATGAGCTTGGAAGTCAGAAACTCTGCTaGACCCGCGTCAAAGAATGTATTCCCAATGGCGTT | + |
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Preference number: 6 (lower is better) Translates to: FFRHELGSQKLC*TRVKECIPNGV Trigger: AACGCCATTGGGAATACATTCTTTGACGCGGGTGCAGCAGAGTTTCTGACTTCCAAGCTCATGTCTGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS CCA 72 bp | TATACAAATTCACGACCGTCTTCTGTGAAGATGCAATaGTCTTCACTTTTCAACTGCTTTACTCCAGATTCG | + |
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Preference number: 6 (lower is better) Translates to: YTNSRPSSVKMQ*SSLFNCFTPDS Trigger: CGAATCTGGAGTAAAGCAGTTGAAAAGTGAAGACCATTGCATCTTCACAGAAGACGGTCGTGAATTTGTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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| CDS TCA 72 bp | AGAGTTTCTTATATACAAATTCACGACCGTCTTCTGTaGAGATGCAATGGTCTTCACTTTTCAACTGCTTTA | + |
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Preference number: 6 (lower is better) Translates to: RVSYIQIHDRLL*RCNGLHFSTAL Trigger: TAAAGCAGTTGAAAAGTGAAGACCATTGCATCTTCACAGAAGACGGTCGTGAATTTGTATATAAGAAACTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041852.8 |
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