RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PYM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064030

Ensembl transcript IDs: ENSMUST00000065210.10, ENSMUST00000163377.10, ENSMUST00000218218.2

Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGTCTTGGAGAGGCCTGTCTCACCACCTTCAGGTCTGGATGGGGTaGCCGGTGTGGTGGCCTCAGGGCTCAGCCCTGGGGGAAGTTCTG +
Preference number: 1 (lower is better)
Translates to: LSWRGLSHHLQVWMG*PVWWPQGSALGEVL
Trigger: CAGAACTTCCCCCAGGGCTGAGCCCTGAGGCCACCACACCGGTCACCCCATCCAGACCTGAAGGTGGTGAGACAGGCCTCTCCAAGACAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR CCA 90 bp TTTGGCTGTCTTGGAGAGGCCTGTCTCACCACCTTCAGGTCTGGATaGGGTGACCGGTGTGGTGGCCTCAGGGCTCAGCCCTGGGGGAAG +
Preference number: 1 (lower is better)
Translates to: FGCLGEACLTTFRSG*GDRCGGLRAQPWGK
Trigger: CTTCCCCCAGGGCTGAGCCCTGAGGCCACCACACCGGTCACCCCATCCAGACCTGAAGGTGGTGAGACAGGCCTCTCCAAGACAGCCAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR GCA 90 bp AGCTGTTCTCTGCTGGGCTGGCTGACCTCCCCGGCCTGGATGCGTTaGTGCAGCTCCTCCACCTGCCGAAGCTTCTTCCTCAGGTTCTTG +
Preference number: 1 (lower is better)
Translates to: SCSLLGWLTSPAWMR*CSSSTCRSFFLRFL
Trigger: CAAGAACCTGAGGAAGAAGCTTCGGCAGGTGGAGGAGCTGCAGCAACGCATCCAGGCCGGGGAGGTCAGCCAGCCCAGCAGAGAACAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR GCA 90 bp TGTTCTCTGCTGGGCTGGCTGACCTCCCCGGCCTGGATGCGTTGCTaGAGCTCCTCCACCTGCCGAAGCTTCTTCCTCAGGTTCTTGATC +
Preference number: 1 (lower is better)
Translates to: CSLLGWLTSPAWMRC*SSSTCRSFFLRFLI
Trigger: GATCAAGAACCTGAGGAAGAAGCTTCGGCAGGTGGAGGAGCTGCAGCAACGCATCCAGGCCGGGGAGGTCAGCCAGCCCAGCAGAGAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR TCA 90 bp CCCAGAGCACCCCATGGTTTGTTCTGCAGTCCACTCCCCTACTCCTaGAGCCTCACAGGCCCAACTCCAAGTCCTCCAGCTCCTCCTCCA +
Preference number: 1 (lower is better)
Translates to: PRAPHGLFCSPLPYS*SLTGPTPSPPAPPP
Trigger: TGGAGGAGGAGCTGGAGGACTTGGAGTTGGGCCTGTGAGGCTTCAGGAGTAGGGGAGTGGACTGCAGAACAAACCATGGGGTGCTCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR CCA 90 bp GCAGCTAGAGGCGTGGCCTGGGGGCCTTGGAGAGCACTAGGTATCTaGGCTGTGTCTCCCAGAGACACCTTATCAAGAGTCCTGCTCAAG +
Preference number: 1 (lower is better)
Translates to: AARGVAWGPWRALGI*AVSPRDTLSRVLLK
Trigger: CTTGAGCAGGACTCTTGATAAGGTGTCTCTGGGAGACACAGCCCAGATACCTAGTGCTCTCCAAGGCCCCCAGGCCACGCCTCTAGCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR CCA 90 bp TCTCCTGTTGCTGCCGCCTCTTCTCCTTCCGCTTCAGGTTTCGTTTaGCTGTCTTGGAGAGGCCTGTCTCACCACCTTCAGGTCTGGATG +
Preference number: 1 (lower is better)
Translates to: SPVAAASSPSASGFV*LSWRGLSHHLQVWM
Trigger: CATCCAGACCTGAAGGTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCGGAAGGAGAAGAGGCGGCAGCAACAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR TCA 90 bp CACCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTaGACACTGGGATGGAAGGGGAAAGTCCAAAAACAGGAGCTGAGA +
Preference number: 1 (lower is better)
Translates to: HPDQQQRYLRSALRL*TLGWKGKVQKQELR
Trigger: TCTCAGCTCCTGTTTTTGGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp GCAGCAGAGTCGGATGGATCAGAGGCAGCTAGAGGCGTGGCCTGGGGGCCTTGGACCTTCAGGTCTGGATaGGGTGACCGGTGTGGTGGC +
Preference number: 2 (lower is better)
Translates to: AAESDGSEAARGVAWGPWTFRSG*GDRCGG
Trigger: GCCACCACACCGGTCACCCCATCCAGACCTGAAGGT...CCAAGGCCCCCAGGCCACGCCTCTAGCTGCCTCTGATCCATCCGACTCTGCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp GCAGCAGAGTCGGATGGATCAGAGGCAGCTAGAGGCGTGGCCTGGGGGCCTTGGCCCCAGAGCACCCCATaGTTTGTTCTGCAGTCCACT +
Preference number: 2 (lower is better)
Translates to: AAESDGSEAARGVAWGPWPQSTP*FVLQST
Trigger: AGTGGACTGCAGAACAAACCATGGGGTGCTCTGGGG...CCAAGGCCCCCAGGCCACGCCTCTAGCTGCCTCTGATCCATCCGACTCTGCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR TCA 90 bp GGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCTGGGGGTACCCCTCCTaGCTGCTGCGGCCCACACTC +
Preference number: 2 (lower is better)
Translates to: GTSGRHSDCEHWDGRGKSWGYPS*LLRPTL
Trigger: GAGTGTGGGCCGCAGCAGTCAGGAGGGGTACCCCCA...GGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR GCA 90 bp CCTCCAGAACCCTCCGTCGAGCCAGCTTCTCCAGCTGTTCTCTGCTGGGCTGGCTCTTTCTCCTGTTGCTaGCGCCTCTTCTCCTTCCGC +
Preference number: 2 (lower is better)
Translates to: PPEPSVEPASPAVLCWAGSFSCC*RLFSFR
Trigger: GCGGAAGGAGAAGAGGCGGCAGCAACAGGAGAAAGA...GCCAGCCCAGCAGAGAACAGCTGGAGAAGCTGGCTCGACGGAGGGTTCTGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR GCA 90 bp GCAGCAGAGTCGGATGGATCAGAGGCAGCTAGAGGCGTGGCCTGGGGGCCTTGGCCTGCTCAAGGCCTCTaGTTCTTTCTCCTGTTGCTG +
Preference number: 2 (lower is better)
Translates to: AAESDGSEAARGVAWGPWPAQGL*FFLLLL
Trigger: CAGCAACAGGAGAAAGAAGCAGAGGCCTTGAGCAGG...CCAAGGCCCCCAGGCCACGCCTCTAGCTGCCTCTGATCCATCCGACTCTGCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR TCA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTTGGGGGTACCCCTCCTaGCTGCTGCGGCCCACACTC +
Preference number: 2 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESWGYPS*LLRPTL
Trigger: GAGTGTGGGCCGCAGCAGTCAGGAGGGGTACCCCCA...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp AGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGGCGGCCCACACTCCCTaGACCCCAGAGCACCCCATG +
Preference number: 2 (lower is better)
Translates to: RGTSGRHSDCEHWDGRGKAAHTP*TPEHPM
Trigger: CATGGGGTGCTCTGGGGTCCAGGGAGTGTGGGCCGC...CTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp GTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCAGCGGCCCACACTCCCTaGACCCCAGAGCACCCCATG +
Preference number: 2 (lower is better)
Translates to: VPQVGTQIVNTGMEGESPAAHTP*TPEHPM
Trigger: CATGGGGTGCTCTGGGGTCCAGGGAGTGTGGGCCGC...TGGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR TCA 90 bp GTCTCCCAGAGACACCTTATCAAGAGTCCTGCTCAAGGCCTCTGCTTCTTTCTCTGGGGGTACCCCTCCTaGCTGCTGCGGCCCACACTC +
Preference number: 2 (lower is better)
Translates to: VSQRHLIKSPAQGLCFFLWGYPS*LLRPTL
Trigger: GAGTGTGGGCCGCAGCAGTCAGGAGGGGTACCCCCA...GAGAAAGAAGCAGAGGCCTTGAGCAGGACTCTTGATAAGGTGTCTCTGGGAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR TCA 90 bp CCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGCACAGGAGGTGGAGGTaGGTCAGTATGGGGGTACCC +
Preference number: 2 (lower is better)
Translates to: PRSAAEVPQVGTQIVNTGHRRWR*VSMGVP
Trigger: GGGTACCCCCATACTGACTCACCTCCACCTCCTGTG...CCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR GCA 90 bp AAGACACCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACCCCTCCTGACTGCTaGGGCCCACACTCCCTGGAC +
Preference number: 2 (lower is better)
Translates to: KTPRSAAEVPQVGTQIVNTPPDC*GPHSLD
Trigger: GTCCAGGGAGTGTGGGCCGCAGCAGTCAGGAGGGGT...GTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGGTGTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR TCA 90 bp GTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCACACAGGAGGTGGAGGTaGGTCAGTATGGGGGTACCC +
Preference number: 2 (lower is better)
Translates to: VPQVGTQIVNTGMEGESPHRRWR*VSMGVP
Trigger: GGGTACCCCCATACTGACTCACCTCCACCTCCTGTG...TGGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp TGGTTTGTTCTGCAGTCCACTCCCCTACTCCTGAAGCCTCACAGGCCCAACTCCCTCAGGGCTCAGCCCTaGGGGAAGTTCTGGTTTACT +
Preference number: 2 (lower is better)
Translates to: WFVLQSTPLLLKPHRPNSLRAQP*GKFWFT
Trigger: AGTAAACCAGAACTTCCCCCAGGGCTGAGCCCTGAG...GGAGTTGGGCCTGTGAGGCTTCAGGAGTAGGGGAGTGGACTGCAGAACAAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR CAA 90 bp TTCTCCTGTTGCTGCCGCCTCTTCTCCTTCCGCTTCAGGTTTCGTTaGGCTGTCTTGGAGAGGCCTGTCTCACCACCTTCAGGTCTGGAT +
Preference number: 2 (lower is better)
Translates to: FSCCCRLFSFRFRFR*AVLERPVSPPSGLD
Trigger: ATCCAGACCTGAAGGTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCGGAAGGAGAAGAGGCGGCAGCAACAGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR GCA 90 bp CACTGTGAACAGGAACTAAGACTCCAAAACATGGGTACTGCTATACCCTCAGCCACCCCTCCTGACTGCTaGGGCCCACACTCCCTGGAC +
Preference number: 2 (lower is better)
Translates to: HCEQELRLQNMGTAIPSATPPDC*GPHSLD
Trigger: GTCCAGGGAGTGTGGGCCGCAGCAGTCAGGAGGGGT...GGCTGAGGGTATAGCAGTACCCATGTTTTGGAGTCTTAGTTCCTGTTCACAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCCCAGAGCACCCCATaGTTTGTTCTGCAGTCCACT +
Preference number: 2 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESPQSTP*FVLQST
Trigger: AGTGGACTGCAGAACAAACCATGGGGTGCTCTGGGG...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp AAGACACCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACCCCCAGAGCACCCCATaGTTTGTTCTGCAGTCCACT +
Preference number: 2 (lower is better)
Translates to: KTPRSAAEVPQVGTQIVNPQSTP*FVLQST
Trigger: AGTGGACTGCAGAACAAACCATGGGGTGCTCTGGGG...GTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGGTGTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp CACTGTGAACAGGAACTAAGACTCCAAAACATGGGTACTGCTATACCCTCAGCCGTGGCCTGGGGGCCTTaGAGAGCACTAGGTATCTGG +
Preference number: 2 (lower is better)
Translates to: HCEQELRLQNMGTAIPSAVAWGP*RALGIW
Trigger: CCAGATACCTAGTGCTCTCCAAGGCCCCCAGGCCAC...GGCTGAGGGTATAGCAGTACCCATGTTTTGGAGTCTTAGTTCCTGTTCACAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR GCA 90 bp GTCAGGGAAGTAATTCATAAACACTGTGAACAGGAACTAAGACTCCAAAACATGACCCCTCCTGACTGCTaGGGCCCACACTCCCTGGAC +
Preference number: 2 (lower is better)
Translates to: VREVIHKHCEQELRLQNMTPPDC*GPHSLD
Trigger: GTCCAGGGAGTGTGGGCCGCAGCAGTCAGGAGGGGT...CATGTTTTGGAGTCTTAGTTCCTGTTCACAGTGTTTATGAATTACTTCCCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp TTCTTTCTCCTGTTGCTGCCGCCTCTTCTCCTTCCGCTTCAGGTTTCGTTTGGCCCCTGGGGGAAGTTCTaGTTTACTCTTGAAAAACTT +
Preference number: 2 (lower is better)
Translates to: FFLLLLPPLLLPLQVSFGPWGKF*FTLEKL
Trigger: AAGTTTTTCAAGAGTAAACCAGAACTTCCCCCAGGG...GCCAAACGAAACCTGAAGCGGAAGGAGAAGAGGCGGCAGCAACAGGAGAAAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR CCA 90 bp GTCAGGGAAGTAATTCATAAACACTGTGAACAGGAACTAAGACTCCAAAACATGTTCGTTTGGCTGTCTTaGAGAGGCCTGTCTCACCAC +
Preference number: 2 (lower is better)
Translates to: VREVIHKHCEQELRLQNMFVWLS*RGLSHH
Trigger: GTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAA...CATGTTTTGGAGTCTTAGTTCCTGTTCACAGTGTTTATGAATTACTTCCCTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR CCA 72 bp CGTCGAGCCAGCTTCTCCAGCTGTTCTCTGCTGGGCTaGCTGACCTCCCCGGCCTGGATGCGTTGCTGCAGC +
Preference number: 3 (lower is better)
Translates to: RRASFSSCSLLG*LTSPAWMRCCS
Trigger: GCTGCAGCAACGCATCCAGGCCGGGGAGGTCAGCCAGCCCAGCAGAGAACAGCTGGAGAAGCTGGCTCGACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR CCA 72 bp CTTGGAGAGGCCTGTCTCACCACCTTCAGGTCTGGATaGGGTGACCGGTGTGGTGGCCTCAGGGCTCAGCCC +
Preference number: 3 (lower is better)
Translates to: LGEACLTTFRSG*GDRCGGLRAQP
Trigger: GGGCTGAGCCCTGAGGCCACCACACCGGTCACCCCATCCAGACCTGAAGGTGGTGAGACAGGCCTCTCCAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR CAA 90 bp CCTCCAGAACCCTCCGTCGAGCCAGCTTCTCCAGCTGTTCTCTGCTGGGCTGGCCGTGGCCTGGGGGCCTaGGAGAGCACTAGGTATCTG +
Preference number: 3 (lower is better)
Translates to: PPEPSVEPASPAVLCWAGRGLGA*ESTRYL
Trigger: CAGATACCTAGTGCTCTCCAAGGCCCCCAGGCCACG...GCCAGCCCAGCAGAGAACAGCTGGAGAAGCTGGCTCGACGGAGGGTTCTGGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR CAA 90 bp CACCCCATGGTTTGTTCTGCAGTCCACTCCCCTACTCCTGAAGCCTCACAGGCCCCCGGCCTGGATGCGTaGCTGCAGCTCCTCCACCTG +
Preference number: 3 (lower is better)
Translates to: HPMVCSAVHSPTPEASQAPGLDA*LQLLHL
Trigger: CAGGTGGAGGAGCTGCAGCAACGCATCCAGGCCGGG...GGCCTGTGAGGCTTCAGGAGTAGGGGAGTGGACTGCAGAACAAACCATGGGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR CAA 90 bp CACCCCATGGTTTGTTCTGCAGTCCACTCCCCTACTCCTGAAGCCTCACAGGCCCGCTTCAGGTTTCGTTaGGCTGTCTTGGAGAGGCCT +
Preference number: 3 (lower is better)
Translates to: HPMVCSAVHSPTPEASQARFRFR*AVLERP
Trigger: AGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCG...GGCCTGTGAGGCTTCAGGAGTAGGGGAGTGGACTGCAGAACAAACCATGGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR CCA 72 bp GCTGCCGCCTCTTCTCCTTCCGCTTCAGGTTTCGTTTaGCTGTCTTGGAGAGGCCTGTCTCACCACCTTCAG +
Preference number: 3 (lower is better)
Translates to: AAASSPSASGFV*LSWRGLSHHLQ
Trigger: CTGAAGGTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCGGAAGGAGAAGAGGCGGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR CAA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTAGAGCACCCCATGGTTaGTTCTGCAGTCCACTCCCC +
Preference number: 3 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESRAPHG*FCSPLP
Trigger: GGGGAGTGGACTGCAGAACAAACCATGGGGTGCTCT...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR-3UTR CAA 90 bp GTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCAAGAGCACCCCATGGTTaGTTCTGCAGTCCACTCCCC +
Preference number: 3 (lower is better)
Translates to: VPQVGTQIVNTGMEGESPRAPHG*FCSPLP
Trigger: GGGGAGTGGACTGCAGAACAAACCATGGGGTGCTCT...TGGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
3UTR GCA 72 bp GTCCTGCTCAAGGCCTCTGCTTCTTTCTCCTGTTGCTaGCGCCTCTTCTCCTTCCGCTTCAGGTTTCGTTTG +
Preference number: 3 (lower is better)
Translates to: VLLKASASFSCC*RLFSFRFRFRL
Trigger: CAAACGAAACCTGAAGCGGAAGGAGAAGAGGCGGCAGCAACAGGAGAAAGAAGCAGAGGCCTTGAGCAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR CCA 72 bp TCTTCTCCTTCCGCTTCAGGTTTCGTTTGGCTGTCTTaGAGAGGCCTGTCTCACCACCTTCAGGTCTGGATG +
Preference number: 3 (lower is better)
Translates to: SSPSASGFVWLS*RGLSHHLQVWM
Trigger: CATCCAGACCTGAAGGTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCGGAAGGAGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR-3UTR CAA 90 bp AAGACACCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACTGCTTCTTTCTCCTGTaGCTGCCGCCTCTTCTCCTT +
Preference number: 3 (lower is better)
Translates to: KTPRSAAEVPQVGTQIVNCFFLL*LPPLLL
Trigger: AAGGAGAAGAGGCGGCAGCAACAGGAGAAAGAAGCA...GTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGGTGTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
CDS-3UTR GCA 90 bp GTGGAGGTGAGTCAGTATGGGGGTACCCCTCCTGACTGCTGCGGCCCACACTCCCCGGCCTGGATGCGTTaGTGCAGCTCCTCCACCTGC +
Preference number: 4 (lower is better)
Translates to: VEVSQYGGTPPDCCGPHSPAWMR*CSSSTC
Trigger: GCAGGTGGAGGAGCTGCAGCAACGCATCCAGGCCGG...GGAGTGTGGGCCGCAGCAGTCAGGAGGGGTACCCCCATACTGACTCACCTCCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR TCA 90 bp GCAGCAGAGTCGGATGGATCAGAGGCAGCTAGAGGCGTGGCCTGGGGGCCTTGGGCACGTATCCTTCTTTaGCCCTCCGCTGCTTTCGCC +
Preference number: 4 (lower is better)
Translates to: AAESDGSEAARGVAWGPWARILL*PSAAFA
Trigger: GGCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGC...CCAAGGCCCCCAGGCCACGCCTCTAGCTGCCTCTGATCCATCCGACTCTGCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
CDS-3UTR CCA 90 bp GTGGAGGTGAGTCAGTATGGGGGTACCCCTCCTGACTGCTGCGGCCCACACTCCGTGGCCTGGGGGCCTTaGAGAGCACTAGGTATCTGG +
Preference number: 4 (lower is better)
Translates to: VEVSQYGGTPPDCCGPHSVAWGP*RALGIW
Trigger: CCAGATACCTAGTGCTCTCCAAGGCCCCCAGGCCAC...GGAGTGTGGGCCGCAGCAGTCAGGAGGGGTACCCCCATACTGACTCACCTCCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp GTGGAGGTGAGTCAGTATGGGGGTACCCCTCCTGACTGCTGCGGCCCACACTCCGCTTCAGGTTTCGTTTaGCTGTCTTGGAGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: VEVSQYGGTPPDCCGPHSASGFV*LSWRGL
Trigger: CAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGC...GGAGTGTGGGCCGCAGCAGTCAGGAGGGGTACCCCCATACTGACTCACCTCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp GTGGAGGTGAGTCAGTATGGGGGTACCCCTCCTGACTGCTGCGGCCCACACTCCAGAGCACTAGGTATCTaGGCTGTGTCTCCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: VEVSQYGGTPPDCCGPHSRALGI*AVSPRD
Trigger: GTCTCTGGGAGACACAGCCCAGATACCTAGTGCTCT...GGAGTGTGGGCCGCAGCAGTCAGGAGGGGTACCCCCATACTGACTCACCTCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp GTGGAGGTGAGTCAGTATGGGGGTACCCCTCCTGACTGCTGCGGCCCACACTCCTCTTGGCTTTCTCTGTaGTGGCAGCAGAGTCGGATG +
Preference number: 4 (lower is better)
Translates to: VEVSQYGGTPPDCCGPHSSWLSL*WQQSRM
Trigger: CATCCGACTCTGCTGCCACCACAGAGAAAGCCAAGA...GGAGTGTGGGCCGCAGCAGTCAGGAGGGGTACCCCCATACTGACTCACCTCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR GCA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCGGCCTGGATGCGTTaGTGCAGCTCCTCCACCTGC +
Preference number: 4 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESPAWMR*CSSSTC
Trigger: GCAGGTGGAGGAGCTGCAGCAACGCATCCAGGCCGG...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp CCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGACCTTCAGGTCTGGATaGGGTGACCGGTGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: PRSAAEVPQVGTQIVNTGTFRSG*GDRCGG
Trigger: GCCACCACACCGGTCACCCCATCCAGACCTGAAGGT...CCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCTGACCTCCCCGGCCTaGATGCGTTGCTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESLTSPA*MRCCSS
Trigger: GGAGCTGCAGCAACGCATCCAGGCCGGGGAGGTCAG...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp AAGACACCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACCTTCAGGTCTGGATaGGGTGACCGGTGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: KTPRSAAEVPQVGTQIVNTFRSG*GDRCGG
Trigger: GCCACCACACCGGTCACCCCATCCAGACCTGAAGGT...GTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGGTGTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp AGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGGTGGCCTGGGGGCCTTaGAGAGCACTAGGTATCTGG +
Preference number: 4 (lower is better)
Translates to: RGTSGRHSDCEHWDGRGKVAWGP*RALGIW
Trigger: CCAGATACCTAGTGCTCTCCAAGGCCCCCAGGCCAC...CTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
3UTR CAA 72 bp TGCTGCCGCCTCTTCTCCTTCCGCTTCAGGTTTCGTTaGGCTGTCTTGGAGAGGCCTGTCTCACCACCTTCA +
Preference number: 4 (lower is better)
Translates to: CCRLFSFRFRFR*AVLERPVSPPS
Trigger: TGAAGGTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCGGAAGGAGAAGAGGCGGCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
CDS-3UTR TCA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTGCACGTATCCTTCTTTaGCCCTCCGCTGCTTTCGCC +
Preference number: 4 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESARILL*PSAAFA
Trigger: GGCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGC...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS-3UTR GCA 90 bp CCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGCCTGCTCAAGGCCTCTaGTTCTTTCTCCTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: PRSAAEVPQVGTQIVNTGPAQGL*FFLLLL
Trigger: CAGCAACAGGAGAAAGAAGCAGAGGCCTTGAGCAGG...CCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp GGCCTCTGCTTCTTTCTCCTGTTGCTGCCGCCTCTTCTCCTTCCGCTTCAGGTTACTGGGACCTCCTCTTaGGGCACGTATCCTTCTTTG +
Preference number: 4 (lower is better)
Translates to: GLCFFLLLLPPLLLPLQVTGTSS*GTYPSL
Trigger: CAAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGT...AACCTGAAGCGGAAGGAGAAGAGGCGGCAGCAACAGGAGAAAGAAGCAGAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
3UTR CAA 72 bp AAGAGTCCTGCTCAAGGCCTCTGCTTCTTTCTCCTGTaGCTGCCGCCTCTTCTCCTTCCGCTTCAGGTTTCG +
Preference number: 4 (lower is better)
Translates to: KSPAQGLCFFLL*LPPLLLPLQVS
Trigger: CGAAACCTGAAGCGGAAGGAGAAGAGGCGGCAGCAACAGGAGAAAGAAGCAGAGGCCTTGAGCAGGACTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
CDS-3UTR GCA 90 bp GTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCATCTTTCTCCTGTTGCTaGCGCCTCTTCTCCTTCCGC +
Preference number: 4 (lower is better)
Translates to: VPQVGTQIVNTGMEGESPSFSCC*RLFSFR
Trigger: GCGGAAGGAGAAGAGGCGGCAGCAACAGGAGAAAGA...TGGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR GCA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTTCTTTCTCCTGTTGCTaGCGCCTCTTCTCCTTCCGC +
Preference number: 4 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESSFSCC*RLFSFR
Trigger: GCGGAAGGAGAAGAGGCGGCAGCAACAGGAGAAAGA...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp GTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCACTCAGGGCTCAGCCCTaGGGGAAGTTCTGGTTTACT +
Preference number: 4 (lower is better)
Translates to: VPQVGTQIVNTGMEGESPLRAQP*GKFWFT
Trigger: AGTAAACCAGAACTTCCCCCAGGGCTGAGCCCTGAG...TGGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp GGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCAGAGCACTAGGTATCTaGGCTGTGTCTCCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: GTSGRHSDCEHWDGRGKSRALGI*AVSPRD
Trigger: GTCTCTGGGAGACACAGCCCAGATACCTAGTGCTCT...GGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp GGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCTCTTGGCTTTCTCTGTaGTGGCAGCAGAGTCGGATG +
Preference number: 4 (lower is better)
Translates to: GTSGRHSDCEHWDGRGKSSWLSL*WQQSRM
Trigger: CATCCGACTCTGCTGCCACCACAGAGAAAGCCAAGA...GGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
3UTR CAA 72 bp CTCTTCTCCTTCCGCTTCAGGTTTCGTTTGGCTGTCTaGGAGAGGCCTGTCTCACCACCTTCAGGTCTGGAT +
Preference number: 4 (lower is better)
Translates to: LFSFRFRFRLAV*ERPVSPPSGLD
Trigger: ATCCAGACCTGAAGGTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCGGAAGGAGAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
CDS-3UTR GCA 90 bp AAGACACCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACCCTGCTCAAGGCCTCTaGTTCTTTCTCCTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: KTPRSAAEVPQVGTQIVNPAQGL*FFLLLL
Trigger: CAGCAACAGGAGAAAGAAGCAGAGGCCTTGAGCAGG...GTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGGTGTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp AGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGACTGGGACCTCCTCTTaGGGCACGTATCCTTCTTTG +
Preference number: 4 (lower is better)
Translates to: RGTSGRHSDCEHWDGRGKTGTSS*GTYPSL
Trigger: CAAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGT...CTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS-3UTR CCA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTTTCGTTTGGCTGTCTTaGAGAGGCCTGTCTCACCAC +
Preference number: 4 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESFVWLS*RGLSHH
Trigger: GTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAA...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp AGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGGCTTCAGGTTTCGTTTaGCTGTCTTGGAGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: RGTSGRHSDCEHWDGRGKASGFV*LSWRGL
Trigger: CAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGC...CTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp GTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCATGGCTTTCTCTGTGGTaGCAGCAGAGTCGGATGGAT +
Preference number: 4 (lower is better)
Translates to: VPQVGTQIVNTGMEGESPWLSLW*QQSRMD
Trigger: ATCCATCCGACTCTGCTGCCACCACAGAGAAAGCCA...TGGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR TCA 90 bp CACTGTGAACAGGAACTAAGACTCCAAAACATGGGTACTGCTATACCCTCAGCCGCACGTATCCTTCTTTaGCCCTCCGCTGCTTTCGCC +
Preference number: 4 (lower is better)
Translates to: HCEQELRLQNMGTAIPSAARILL*PSAAFA
Trigger: GGCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGC...GGCTGAGGGTATAGCAGTACCCATGTTTTGGAGTCTTAGTTCCTGTTCACAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS-3UTR CCA 90 bp CATAAACACTGTGAACAGGAACTAAGACTCCAAAACATGGGTACTGCTATACCCCTGACCTCCCCGGCCTaGATGCGTTGCTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: HKHCEQELRLQNMGTAIPLTSPA*MRCCSS
Trigger: GGAGCTGCAGCAACGCATCCAGGCCGGGGAGGTCAG...GGGTATAGCAGTACCCATGTTTTGGAGTCTTAGTTCCTGTTCACAGTGTTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR GCA 90 bp GTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCACCTTATCAAGAGTCCTaGTCAAGGCCTCTGCTTCTT +
Preference number: 4 (lower is better)
Translates to: VPQVGTQIVNTGMEGESPPYQES*SRPLLL
Trigger: AAGAAGCAGAGGCCTTGAGCAGGACTCTTGATAAGG...TGGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR TCA 90 bp TTCTTTCTCCTGTTGCTGCCGCCTCTTCTCCTTCCGCTTCAGGTTTCGTTTGGCGGCAATGTACTTGCCTaGAAGGAAATGTGTCACAGA +
Preference number: 4 (lower is better)
Translates to: FFLLLLPPLLLPLQVSFGGNVLA*KEMCHR
Trigger: TCTGTGACACATTTCCTTTCAGGCAAGTACATTGCC...GCCAAACGAAACCTGAAGCGGAAGGAGAAGAGGCGGCAGCAACAGGAGAAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
CDS-3UTR TCA 90 bp GGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCGAAATGTGTCACAGATaGAGTCCAGGTTGTAGTAAT +
Preference number: 4 (lower is better)
Translates to: GTSGRHSDCEHWDGRGKSEMCHR*SPGCSN
Trigger: ATTACTACAACCTGGACTTCATCTGTGACACATTTC...GGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
CDS-3UTR CCA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCCTGGGGGAAGTTCTaGTTTACTCTTGAAAAACTT +
Preference number: 4 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESPWGKF*FTLEKL
Trigger: AAGTTTTTCAAGAGTAAACCAGAACTTCCCCCAGGG...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp AGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGCCCTGGGGGAAGTTCTaGTTTACTCTTGAAAAACTT +
Preference number: 4 (lower is better)
Translates to: RGTSGRHSDCEHWDGRGKPWGKF*FTLEKL
Trigger: AAGTTTTTCAAGAGTAAACCAGAACTTCCCCCAGGG...CTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp CATAAACACTGTGAACAGGAACTAAGACTCCAAAACATGGGTACTGCTATACCCTTCGTTTGGCTGTCTTaGAGAGGCCTGTCTCACCAC +
Preference number: 4 (lower is better)
Translates to: HKHCEQELRLQNMGTAIPFVWLS*RGLSHH
Trigger: GTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAA...GGGTATAGCAGTACCCATGTTTTGGAGTCTTAGTTCCTGTTCACAGTGTTTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CCA 90 bp CATAAACACTGTGAACAGGAACTAAGACTCCAAAACATGGGTACTGCTATACCCTGGCTTTCTCTGTGGTaGCAGCAGAGTCGGATGGAT +
Preference number: 4 (lower is better)
Translates to: HKHCEQELRLQNMGTAIPWLSLW*QQSRMD
Trigger: ATCCATCCGACTCTGCTGCCACCACAGAGAAAGCCA...GGGTATAGCAGTACCCATGTTTTGGAGTCTTAGTTCCTGTTCACAGTGTTTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS TCA 90 bp TTTGACCCTCCGCTGCTTTCGCCACGTCCCGTCGGGTCTCTGTGTTaGGGCAATGTACTTGCCTGTCCCCGTGGCCTCGGGGGTGCTGGC +
Preference number: 5 (lower is better)
Translates to: FDPPLLSPRPVGSLC*GNVLACPRGLGGAG
Trigger: GCCAGCACCCCCGAGGCCACGGGGACAGGCAAGTACATTGCCTCAACACAGAGACCCGACGGGACGTGGCGAAAGCAGCGGAGGGTCAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp CCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGCCCGGCCTGGATGCGTaGCTGCAGCTCCTCCACCTG +
Preference number: 5 (lower is better)
Translates to: PRSAAEVPQVGTQIVNTGPGLDA*LQLLHL
Trigger: CAGGTGGAGGAGCTGCAGCAACGCATCCAGGCCGGG...CCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS GCA 90 bp ACTGGGACCTCCTCTTGGGGCACGTATCCTTCTTTGACCCTCCGCTaGTTTCGCCACGTCCCGTCGGGTCTCTGTGTTGAGGCAATGTAC +
Preference number: 5 (lower is better)
Translates to: TGTSSWGTYPSLTLR*FRHVPSGLCVEAMY
Trigger: GTACATTGCCTCAACACAGAGACCCGACGGGACGTGGCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS TCA 90 bp TGTTTTCATAGACTGGGACCTCCTCTTGGGGCACGTATCCTTCTTTaGCCCTCCGCTGCTTTCGCCACGTCCCGTCGGGTCTCTGTGTTG +
Preference number: 5 (lower is better)
Translates to: CFHRLGPPLGARILL*PSAAFATSRRVSVL
Trigger: CAACACAGAGACCCGACGGGACGTGGCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGTCTATGAAAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp CGCTTCAGGTTTCGTTTGGCTGTCTTGGAGAGGCCTGTCTCACCACCTTCAGGTGGCACGTATCCTTCTTaGACCCTCCGCTGCTTTCGC +
Preference number: 5 (lower is better)
Translates to: RFRFRLAVLERPVSPPSGGTYPS*TLRCFR
Trigger: GCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGCC...ACCTGAAGGTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
CDS-3UTR CAA 90 bp AAGACACCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACGGCACGTATCCTTCTTaGACCCTCCGCTGCTTTCGC +
Preference number: 5 (lower is better)
Translates to: KTPRSAAEVPQVGTQIVNGTYPS*TLRCFR
Trigger: GCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGCC...GTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGGTGTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS-3UTR CAA 90 bp AGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGGGCACGTATCCTTCTTaGACCCTCCGCTGCTTTCGC +
Preference number: 5 (lower is better)
Translates to: RGTSGRHSDCEHWDGRGKGTYPS*TLRCFR
Trigger: GCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGCC...CTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS-3UTR CAA 90 bp ACCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGACTGGGACCTCCTCTaGGGGCACGTATCCTTCTTT +
Preference number: 5 (lower is better)
Translates to: TQISSRGTSGRHSDCEHWDWDLL*GHVSFF
Trigger: AAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGTC...CCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS-3UTR CAA 90 bp GGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCCGCTTCAGGTTTCGTTaGGCTGTCTTGGAGAGGCCT +
Preference number: 5 (lower is better)
Translates to: GTSGRHSDCEHWDGRGKSRFRFR*AVLERP
Trigger: AGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCG...GGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp CCCAGATCAGCAGCAGAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGTGCTTCTTTCTCCTGTaGCTGCCGCCTCTTCTCCTT +
Preference number: 5 (lower is better)
Translates to: PRSAAEVPQVGTQIVNTGCFFLL*LPPLLL
Trigger: AAGGAGAAGAGGCGGCAGCAACAGGAGAAAGAAGCA...CCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTCTGCTGCTGATCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTGACTGGGACCTCCTCTaGGGGCACGTATCCTTCTTT +
Preference number: 5 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESDWDLL*GHVSFF
Trigger: AAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGTC...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS-3UTR CAA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCGCTTCAGGTTTCGTTaGGCTGTCTTGGAGAGGCCT +
Preference number: 5 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESRFRFR*AVLERP
Trigger: AGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCG...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp GGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTCCAGGTTCTTGATCTTCTaGGCTTTCTCTGTGGTGGCA +
Preference number: 5 (lower is better)
Translates to: GTSGRHSDCEHWDGRGKSRFLIF*AFSVVA
Trigger: TGCCACCACAGAGAAAGCCAAGAAGATCAAGAACCT...GGACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp CATAAACACTGTGAACAGGAACTAAGACTCCAAAACATGGGTACTGCTATACCCCGTGGCCTGGGGGCCTaGGAGAGCACTAGGTATCTG +
Preference number: 5 (lower is better)
Translates to: HKHCEQELRLQNMGTAIPRGLGA*ESTRYL
Trigger: CAGATACCTAGTGCTCTCCAAGGCCCCCAGGCCACG...GGGTATAGCAGTACCCATGTTTTGGAGTCTTAGTTCCTGTTCACAGTGTTTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp GAGGTACCTCAGGTCGGCACTCAGATTGTGAACACTGGGATGGAAGGGGAAAGTAGGTTCTTGATCTTCTaGGCTTTCTCTGTGGTGGCA +
Preference number: 5 (lower is better)
Translates to: EVPQVGTQIVNTGMEGESRFLIF*AFSVVA
Trigger: TGCCACCACAGAGAAAGCCAAGAAGATCAAGAACCT...ACTTTCCCCTTCCATCCCAGTGTTCACAATCTGAGTGCCGACCTGAGGTACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp GTCAGGGAAGTAATTCATAAACACTGTGAACAGGAACTAAGACTCCAAAACATGCCCGGCCTGGATGCGTaGCTGCAGCTCCTCCACCTG +
Preference number: 5 (lower is better)
Translates to: VREVIHKHCEQELRLQNMPGLDA*LQLLHL
Trigger: CAGGTGGAGGAGCTGCAGCAACGCATCCAGGCCGGG...CATGTTTTGGAGTCTTAGTTCCTGTTCACAGTGTTTATGAATTACTTCCCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp GTCAGGGAAGTAATTCATAAACACTGTGAACAGGAACTAAGACTCCAAAACATGCGTGGCCTGGGGGCCTaGGAGAGCACTAGGTATCTG +
Preference number: 5 (lower is better)
Translates to: VREVIHKHCEQELRLQNMRGLGA*ESTRYL
Trigger: CAGATACCTAGTGCTCTCCAAGGCCCCCAGGCCACG...CATGTTTTGGAGTCTTAGTTCCTGTTCACAGTGTTTATGAATTACTTCCCTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS-3UTR CAA 90 bp CATAAACACTGTGAACAGGAACTAAGACTCCAAAACATGGGTACTGCTATACCCTGCTTCTTTCTCCTGTaGCTGCCGCCTCTTCTCCTT +
Preference number: 5 (lower is better)
Translates to: HKHCEQELRLQNMGTAIPCFFLL*LPPLLL
Trigger: AAGGAGAAGAGGCGGCAGCAACAGGAGAAAGAAGCA...GGGTATAGCAGTACCCATGTTTTGGAGTCTTAGTTCCTGTTCACAGTGTTTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
CDS TCA 72 bp AGACTGGGACCTCCTCTTGGGGCACGTATCCTTCTTTaGCCCTCCGCTGCTTTCGCCACGTCCCGTCGGGTC +
Preference number: 6 (lower is better)
Translates to: RLGPPLGARILL*PSAAFATSRRV
Trigger: GACCCGACGGGACGTGGCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS GCA 72 bp TCCTCTTGGGGCACGTATCCTTCTTTGACCCTCCGCTaGTTTCGCCACGTCCCGTCGGGTCTCTGTGTTGAG +
Preference number: 6 (lower is better)
Translates to: SSWGTYPSLTLR*FRHVPSGLCVE
Trigger: CTCAACACAGAGACCCGACGGGACGTGGCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGCCCCAAGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10
ENSMUST00000218218.2
CDS GCA 72 bp ACGTCCCGTCGGGTCTCTGTGTTGAGGCAATGTACTTaGCGCCGGTCTCGTCAGTTACATAGGGAGTCGCCA +
Preference number: 6 (lower is better)
Translates to: TSRRVSVLRQCT*RRSRQLHRESP
Trigger: TGGCGACTCCCTATGTAACTGACGAGACCGGCGGCAAGTACATTGCCTCAACACAGAGACCCGACGGGACGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065210.10
CDS GCA 72 bp ACGTCCCGTCGGGTCTCTGTGTTGAGGCAATGTACTTaGCTGAAAGGAAATGTGTCACAGATGAAGTCCAGG +
Preference number: 6 (lower is better)
Translates to: TSRRVSVLRQCT*LKGNVSQMKSR
Trigger: CCTGGACTTCATCTGTGACACATTTCCTTTCAGGCAAGTACATTGCCTCAACACAGAGACCCGACGGGACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218218.2
CDS CAA 72 bp CTTCACATACTTGTTTTCATAGACTGGGACCTCCTCTaGGGGCACGTATCCTTCTTTGACCCTCCGCTGCTT +
Preference number: 6 (lower is better)
Translates to: LHILVFIDWDLL*GHVSFFDPPLL
Trigger: AAGCAGCGGAGGGTCAAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGTCTATGAAAACAAGTATGTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065210.10
ENSMUST00000163377.10