Pregenerated sensors for PYCR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026520Ensembl transcript IDs: ENSMUST00000027802.9
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCACCTTCTGCCACGGGACAGGAGAAGGACTCGGTGGCACCAGGTaGACAGATGTAAGCAGCTTCACCCCCAGACCTGAGCCTGCCCCT | + |
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Preference number: 1 (lower is better) Translates to: STFCHGTGEGLGGTR*TDVSSFTPRPEPAP Trigger: AGGGGCAGGCTCAGGTCTGGGGGTGAAGCTGCTTACATCTGTTCACCTGGTGCCACCGAGTCCTTCTCCTGTCCCGTGGCAGAAGGTGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR TCA 90 bp | GGGGATGCTAACTCTAAGGCCTCCACCTCTCTCAGAGAGGCATGCTaGCTTCTGGCATCAGCCGCCTCTTCAGAGCACCTTCTGCCACGG | + |
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Preference number: 1 (lower is better) Translates to: GDANSKASTSLREAC*LLASAASSEHLLPR Trigger: CCGTGGCAGAAGGTGCTCTGAAGAGGCGGCTGATGCCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAGGCCTTAGAGTTAGCATCCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR CCA 90 bp | CTAACTCTAAGGCCTCCACCTCTCTCAGAGAGGCATGCTGACTTCTaGCATCAGCCGCCTCTTCAGAGCACCTTCTGCCACGGGACAGGA | + |
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Preference number: 1 (lower is better) Translates to: LTLRPPPLSERHADF*HQPPLQSTFCHGTG Trigger: TCCTGTCCCGTGGCAGAAGGTGCTCTGAAGAGGCGGCTGATGCCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAGGCCTTAGAGTTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR TCA 90 bp | CTAATGGGTCACCTGTCCAGAAGAGTTAAGCAAGAGGTCACAGGATaGCTCCCCACACTTCCACCTGCAACACCAAGACACAGGCTTCTT | + |
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Preference number: 1 (lower is better) Translates to: LMGHLSRRVKQEVTG*LPTLPPATPRHRLL Trigger: AAGAAGCCTGTGTCTTGGTGTTGCAGGTGGAAGTGTGGGGAGTCATCCTGTGACCTCTTGCTTAACTCTTCTGGACAGGTGACCCATTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR-3UTR TCA 90 bp | CCCCACACTTCCACCTGCAACACCAAGACACAGGCTTCTTTGCGTGTTTTTAATCTCGGTGGCACCAGGTaGACAGATGTAAGCAGCTTC | + |
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Preference number: 2 (lower is better) Translates to: PHTSTCNTKTQASLRVFNLGGTR*TDVSSF Trigger: GAAGCTGCTTACATCTGTTCACCTGGTGCCACCGAG...ATTAAAAACACGCAAAGAAGCCTGTGTCTTGGTGTTGCAGGTGGAAGTGTGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR-3UTR TCA 90 bp | ACACCAAGACACAGGCTTCTTTGCGTGTTTTTAATTCAGAGGATTCCCGTTTCCCTCAGAGAGGCATGCTaGCTTCTGGCATCAGCCGCC | + |
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Preference number: 2 (lower is better) Translates to: TPRHRLLCVFLIQRIPVSLREAC*LLASAA Trigger: GGCGGCTGATGCCAGAAGTCAGCATGCCTCTCTGAG...GGAAACGGGAATCCTCTGAATTAAAAACACGCAAAGAAGCCTGTGTCTTGGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR CAA 90 bp | ATGACTCCCCACACTTCCACCTGCAACACCAAGACACAGGCTTCTTaGCGTGTTTTTAATTCAGAGGATTCCCGTTTCCTCTCACCTCAC | + |
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Preference number: 2 (lower is better) Translates to: MTPHTSTCNTKTQAS*RVFNSEDSRFLSPH Trigger: GTGAGGTGAGAGGAAACGGGAATCCTCTGAATTAAAAACACGCAAAGAAGCCTGTGTCTTGGTGTTGCAGGTGGAAGTGTGGGGAGTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR GCA 72 bp | GACTTCTGGCATCAGCCGCCTCTTCAGAGCACCTTCTaGCACGGGACAGGAGAAGGACTCGGTGGCACCAGG | + |
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Preference number: 3 (lower is better) Translates to: DFWHQPPLQSTF*HGTGEGLGGTR Trigger: CCTGGTGCCACCGAGTCCTTCTCCTGTCCCGTGGCAGAAGGTGCTCTGAAGAGGCGGCTGATGCCAGAAGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR TCA 72 bp | TGCCACGGGACAGGAGAAGGACTCGGTGGCACCAGGTaGACAGATGTAAGCAGCTTCACCCCCAGACCTGAG | + |
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Preference number: 3 (lower is better) Translates to: CHGTGEGLGGTR*TDVSSFTPRPE Trigger: CTCAGGTCTGGGGGTGAAGCTGCTTACATCTGTTCACCTGGTGCCACCGAGTCCTTCTCCTGTCCCGTGGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR CCA 72 bp | AGGCCTCCACCTCTCTCAGAGAGGCATGCTGACTTCTaGCATCAGCCGCCTCTTCAGAGCACCTTCTGCCAC | + |
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Preference number: 3 (lower is better) Translates to: RPPPLSERHADF*HQPPLQSTFCH Trigger: GTGGCAGAAGGTGCTCTGAAGAGGCGGCTGATGCCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAGGCCT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR TCA 72 bp | AACTCTAAGGCCTCCACCTCTCTCAGAGAGGCATGCTaGCTTCTGGCATCAGCCGCCTCTTCAGAGCACCTT | + |
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Preference number: 3 (lower is better) Translates to: NSKASTSLREAC*LLASAASSEHL Trigger: AAGGTGCTCTGAAGAGGCGGCTGATGCCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAGGCCTTAGAGTT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR GCA 72 bp | GCAAGAGGTCACAGGATGACTCCCCACACTTCCACCTaGAACACCAAGACACAGGCTTCTTTGCGTGTTTTT | + |
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Preference number: 3 (lower is better) Translates to: ARGHRMTPHTST*NTKTQASLRVF Trigger: AAAAACACGCAAAGAAGCCTGTGTCTTGGTGTTGCAGGTGGAAGTGTGGGGAGTCATCCTGTGACCTCTTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR GCA 72 bp | ACACTTCCACCTGCAACACCAAGACACAGGCTTCTTTaGGTGTTTTTAATTCAGAGGATTCCCGTTTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: TLPPATPRHRLL*VFLIQRIPVSS Trigger: AGAGGAAACGGGAATCCTCTGAATTAAAAACACGCAAAGAAGCCTGTGTCTTGGTGTTGCAGGTGGAAGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR TCA 90 bp | CGCCTCTTCAGAGCACCTTCTGCCACGGGACAGGAGAAGGACTCGGTGGCACCAGGGCGTCCAGGGCCATaGATGCATAGGCAGGCCCGC | + |
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Preference number: 4 (lower is better) Translates to: RLFRAPSATGQEKDSVAPGRPGP*MHRQAR Trigger: GCGGGCCTGCCTATGCATTCATGGCCCTGGACGCCC...TGGTGCCACCGAGTCCTTCTCCTGTCCCGTGGCAGAAGGTGCTCTGAAGAGGCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | GCCTCTTCAGAGCACCTTCTGCCACGGGACAGGAGAAGGACTCGGTGGCACCAGGGAGTTTCCCTGAGCTaGGTGGGGCCAGCGTGGACA | + |
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Preference number: 4 (lower is better) Translates to: ASSEHLLPRDRRRTRWHQGVSLS*VGPAWT Trigger: TGTCCACGCTGGCCCCACCCAGCTCAGGGAAACTCC...CTGGTGCCACCGAGTCCTTCTCCTGTCCCGTGGCAGAAGGTGCTCTGAAGAGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR GCA 90 bp | AGCCGCCTCTTCAGAGCACCTTCTGCCACGGGACAGGAGAAGGACTCGGTGGCACAGGAGACCACGATGTaGCTCTCCTGCACGTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: SRLFRAPSATGQEKDSVAQETTM*LSCTSA Trigger: AGCCGACGTGCAGGAGAGGCACATCGTGGTCTCCTG...TGCCACCGAGTCCTTCTCCTGTCCCGTGGCAGAAGGTGCTCTGAAGAGGCGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR TCA 90 bp | CTGGCATCAGCCGCCTCTTCAGAGCACCTTCTGCCACGGGACAGGAGAAGGACTCGTGGACACCGTGGGTaGCTCCAGCTTCACTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LASAASSEHLLPRDRRRTRGHRG*LQLHSV Trigger: GACAGAGTGAAGCTGGAGTCACCCACGGTGTCCACG...AGTCCTTCTCCTGTCCCGTGGCAGAAGGTGCTCTGAAGAGGCGGCTGATGCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | CTCCACCTCTCTCAGAGAGGCATGCTGACTTCTGGCATCAGCCGCCTCTTCAGACCGTGGCATACACGGTaGCCCCCTCTCGGACCACCA | + |
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Preference number: 4 (lower is better) Translates to: LHLSQRGMLTSGISRLFRPWHTR*PPLGPP Trigger: TGGTGGTCCGAGAGGGGGCCACCGTGTATGCCACGG...TCTGAAGAGGCGGCTGATGCCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR GCA 90 bp | GCCTCTTCAGAGCACCTTCTGCCACGGGACAGGAGAAGGACTCGGTGGCACCAGACGATGTGCCTCTCCTaGACGTCGGCTCCAATCTCA | + |
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Preference number: 4 (lower is better) Translates to: ASSEHLLPRDRRRTRWHQTMCLS*TSAPIS Trigger: TGAGATTGGAGCCGACGTGCAGGAGAGGCACATCGT...CTGGTGCCACCGAGTCCTTCTCCTGTCCCGTGGCAGAAGGTGCTCTGAAGAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR TCA 90 bp | AGGCCTCCACCTCTCTCAGAGAGGCATGCTGACTTCTGGCATCAGCCGCCTCTTGCCTGGATGGTCCTCTaGGTCCAGCAGCATCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: RPPPLSERHADFWHQPPLAWMVL*VQQHLS Trigger: GCTAAGATGCTGCTGGACTCAGAGGACCATCCAGGC...AAGAGGCGGCTGATGCCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAGGCCT 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR GCA 90 bp | CTTCCGCTGAGGGGGATGCTAACTCTAAGGCCTCCACCTCTCTCAGAGAGGCATGATGGTGACCCCGGCTaGACAGGAGACCACGATGTG | + |
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Preference number: 4 (lower is better) Translates to: LPLRGMLTLRPPPLSERHDGDPG*TGDHDV Trigger: CACATCGTGGTCTCCTGTGCAGCCGGGGTCACCATC...ATGCCTCTCTGAGAGAGGTGGAGGCCTTAGAGTTAGCATCCCCCTCAGCGGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | CTTCTGGCATCAGCCGCCTCTTCAGAGCACCTTCTGCCACGGGACAGGAGAAGGACGTTGTCCTTGAGCTaGCCTGGATGGTCCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LLASAASSEHLLPRDRRRTLSLS*PGWSSE Trigger: CTCAGAGGACCATCCAGGCCAGCTCAAGGACAACGT...CCTTCTCCTGTCCCGTGGCAGAAGGTGCTCTGAAGAGGCGGCTGATGCCAGAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR TCA 90 bp | GGGATGCTAACTCTAAGGCCTCCACCTCTCTCAGAGAGGCATGCTGACTTCTGGCTGGCTATTATCTTGTaGGCCGACAGGACGCCCGCG | + |
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Preference number: 4 (lower is better) Translates to: GMLTLRPPPLSERHADFWLAIIL*ADRTPA Trigger: CGCGGGCGTCCTGTCGGCTCACAAGATAATAGCCAG...CCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAGGCCTTAGAGTTAGCATCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR TCA 90 bp | GGGATGCTAACTCTAAGGCCTCCACCTCTCTCAGAGAGGCATGCTGACTTCTGGTGTAAGGAGTTTCCCTaGGCTGGGTGGGGCCAGCGT | + |
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Preference number: 4 (lower is better) Translates to: GMLTLRPPPLSERHADFWCKEFP*AGWGQR Trigger: ACGCTGGCCCCACCCAGCTCAGGGAAACTCCTTACA...CCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAGGCCTTAGAGTTAGCATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR GCA 90 bp | AGGCCTCCACCTCTCTCAGAGAGGCATGCTGACTTCTGGCATCAGCCGCCTCTTCTTCCTCCACCTCTGTaGAGAAGCCCACACTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: RPPPLSERHADFWHQPPLLPPPL*RSPHCS Trigger: TGAGCAGTGTGGGCTTCTGCACAGAGGTGGAGGAAG...AAGAGGCGGCTGATGCCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAGGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | TCGGATCTAACTAAAGCTCTCCACAGACTTCCGCTGAGGGGGATGCTAACTCTATGGGTGGGGCCAGCGTaGACACCGTGGGTGACTCCA | + |
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Preference number: 4 (lower is better) Translates to: SDLTKALHRLPLRGMLTLWVGPA*TPWVTP Trigger: TGGAGTCACCCACGGTGTCCACGCTGGCCCCACCCA...TAGAGTTAGCATCCCCCTCAGCGGAAGTCTGTGGAGAGCTTTAGTTAGATCCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR GCA 90 bp | TCTTTGCGTGTTTTTAATTCAGAGGATTCCCGTTTCCTCTCACCTCACCTGGAGCTTCACCCCACCATCTaGCAGGGCGTCCAGGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: SLRVFNSEDSRFLSPHLELHPTI*QGVQGH Trigger: ATGGCCCTGGACGCCCTGGCAGATGGTGGGGTGAAG...CTCCAGGTGAGGTGAGAGGAAACGGGAATCCTCTGAATTAAAAACACGCAAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | TCTTTGCGTGTTTTTAATTCAGAGGATTCCCGTTTCCTCTCACCTCACCTGGAGAGAGCACAGGCCAGCTaGCCTGCGCCGATGAAACCC | + |
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Preference number: 4 (lower is better) Translates to: SLRVFNSEDSRFLSPHLERAQAS*PAPMKP Trigger: GGGTTTCATCGGCGCAGGCCAGCTGGCCTGTGCTCT...CTCCAGGTGAGGTGAGAGGAAACGGGAATCCTCTGAATTAAAAACACGCAAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | TCAGAGGATTCCCGTTTCCTCTCACCTCACCTGGAGATCAATCTGAAGCAGCCTACTTTGGGGGCCGGCTaGAAAGCCATCAGCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SEDSRFLSPHLEINLKQPTLGAG*KAISFF Trigger: GAAGAAGCTGATGGCTTTCCAGCCGGCCCCCAAAGT...AGGCTGCTTCAGATTGATCTCCAGGTGAGGTGAGAGGAAACGGGAATCCTCTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | CTTCCGCTGAGGGGGATGCTAACTCTAAGGCCTCCACCTCTCTCAGAGAGGCATTTTCTTGGTCAGCCATaGACTGCAGTTCTCTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: LPLRGMLTLRPPPLSERHFLGQP*TAVLWF Trigger: GAACCAGAGAACTGCAGTCCATGGCTGACCAAGAAA...ATGCCTCTCTGAGAGAGGTGGAGGCCTTAGAGTTAGCATCCCCCTCAGCGGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR GCA 90 bp | GGGATGCTAACTCTAAGGCCTCCACCTCTCTCAGAGAGGCATGCTGACTTCTGGGCACAGTGTCCTTATTaGTTCGGGTCAGATTCACAC | + |
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Preference number: 4 (lower is better) Translates to: GMLTLRPPPLSERHADFWAQCPY*FGSDSH Trigger: GTGTGAATCTGACCCGAAGCAATAAGGACACTGTGC...CCAGAAGTCAGCATGCCTCTCTGAGAGAGGTGGAGGCCTTAGAGTTAGCATCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | TCTTTGCGTGTTTTTAATTCAGAGGATTCCCGTTTCCTCTCACCTCACCTGGAGCCAGCGTGGACACCGTaGGTGACTCCAGCTTCACTC | + |
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Preference number: 4 (lower is better) Translates to: SLRVFNSEDSRFLSPHLEPAWTP*VTPASL Trigger: GAGTGAAGCTGGAGTCACCCACGGTGTCCACGCTGG...CTCCAGGTGAGGTGAGAGGAAACGGGAATCCTCTGAATTAAAAACACGCAAAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | TCTTTGCGTGTTTTTAATTCAGAGGATTCCCGTTTCCTCTCACCTCACCTGGAGTCTTCCACCAGAGCATaGGTGCCCGTGGCATACACG | + |
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Preference number: 4 (lower is better) Translates to: SLRVFNSEDSRFLSPHLESSTRA*VPVAYT Trigger: CGTGTATGCCACGGGCACCCATGCTCTGGTGGAAGA...CTCCAGGTGAGGTGAGAGGAAACGGGAATCCTCTGAATTAAAAACACGCAAAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CCA 90 bp | AGGCTTCTTTGCGTGTTTTTAATTCAGAGGATTCCCGTTTCCTCTCACCTCACCTGGACTGCAGTTCTCTaGTTCGGATACAGGAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: RLLCVFLIQRIPVSSHLTWTAVL*FGYRRP Trigger: AGGCCTCCTGTATCCGAACCAGAGAACTGCAGTCCA...GGTGAGGTGAGAGGAAACGGGAATCCTCTGAATTAAAAACACGCAAAGAAGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| 3UTR CAA 72 bp | CACACTTCCACCTGCAACACCAAGACACAGGCTTCTTaGCGTGTTTTTAATTCAGAGGATTCCCGTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: HTSTCNTKTQAS*RVFNSEDSRFL Trigger: GAGGAAACGGGAATCCTCTGAATTAAAAACACGCAAAGAAGCCTGTGTCTTGGTGTTGCAGGTGGAAGTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CAA 90 bp | CTGACTTCTGGCATCAGCCGCCTCTTCAGAGCACCTTCTGCCACGGGACAGGAGGAGGCCTCAACCGCATaGATGAGCAGAGAGCGGAAG | + |
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Preference number: 5 (lower is better) Translates to: LTSGISRLFRAPSATGQEEASTA*MSRERK Trigger: CTTCCGCTCTCTGCTCATCAATGCGGTTGAGGCCTC...CTCCTGTCCCGTGGCAGAAGGTGCTCTGAAGAGGCGGCTGATGCCAGAAGTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS-3UTR CAA 90 bp | CCCCACACTTCCACCTGCAACACCAAGACACAGGCTTCTTTGCGTGTTTTTAATGAGCAGACGTTGTCCTaGAGCTGGCCTGGATGGTCC | + |
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Preference number: 5 (lower is better) Translates to: PHTSTCNTKTQASLRVFNEQTLS*SWPGWS Trigger: GGACCATCCAGGCCAGCTCAAGGACAACGTCTGCTC...ATTAAAAACACGCAAAGAAGCCTGTGTCTTGGTGTTGCAGGTGGAAGTGTGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS TCA 72 bp | GGCAGGTCCATATCCGGGGAGCTGGCTATTATCTTGTaGGCCGACAGGACGCCCGCGGCCGTGAAGCCCCGC | + |
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Preference number: 6 (lower is better) Translates to: GRSISGELAIIL*ADRTPAAVKPR Trigger: GCGGGGCTTCACGGCCGCGGGCGTCCTGTCGGCTCACAAGATAATAGCCAGCTCCCCGGATATGGACCTGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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| CDS CAA 72 bp | AGGAACAGGACGTCGCTGTGCCGCACAGTGTCCTTATaGCTTCGGGTCAGATTCACACCCATCCTCCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: RNRTSLCRTVSL*LRVRFTPILLS Trigger: GCTCAGGAGGATGGGTGTGAATCTGACCCGAAGCAATAAGGACACTGTGCGGCACAGCGACGTCCTGTTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027802.9 |
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