Pregenerated sensors for PXT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045378Ensembl transcript IDs: ENSMUST00000051526.6, ENSMUST00000233413.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTAATGGAAGGGAAGGTGGCTGGGCCAGGGCTCAGGGCTGCGTACTaGAGACCCGGCTCCTTTCAGCTCCGCACAGAGCAGAGGATCTGG | + |
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Preference number: 1 (lower is better) Translates to: LMEGKVAGPGLRAAY*RPGSFQLRTEQRIW Trigger: CCAGATCCTCTGCTCTGTGCGGAGCTGAAAGGAGCCGGGTCTCCAGTACGCAGCCCTGAGCCCTGGCCCAGCCACCTTCCCTTCCATTAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR CCA 90 bp | ATAGACCAGGAACAGGTGGTGGTGTCTAATGGAAGGGAAGGTGGCTaGGCCAGGGCTCAGGGCTGCGTACTGGAGACCCGGCTCCTTTCA | + |
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Preference number: 1 (lower is better) Translates to: IDQEQVVVSNGREGG*ARAQGCVLETRLLS Trigger: TGAAAGGAGCCGGGTCTCCAGTACGCAGCCCTGAGCCCTGGCCCAGCCACCTTCCCTTCCATTAGACACCACCACCTGTTCCTGGTCTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR CCA 90 bp | TTCCTTTACAGCAAATGGTTGTTCCAGAAAAATCTCAGCAGCACCTaGCCTCTCACGAACACCAGCGCCACAAAAGGAGCCAGCACATCT | + |
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Preference number: 1 (lower is better) Translates to: FLYSKWLFQKNLSST*PLTNTSATKGASTS Trigger: AGATGTGCTGGCTCCTTTTGTGGCGCTGGTGTTCGTGAGAGGCCAGGTGCTGCTGAGATTTTTCTGGAACAACCATTTGCTGTAAAGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233413.2 |
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| 3UTR CCA 90 bp | CTCCAGAGTGTGGGACTTGTCTGTCTGTCCTTCCTTTACAGCAAATaGTTGTTCCAGAAAAATCTCAGCAGCACCTGGCCTCTCACGAAC | + |
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Preference number: 1 (lower is better) Translates to: LQSVGLVCLSFLYSK*LFQKNLSSTWPLTN Trigger: GTTCGTGAGAGGCCAGGTGCTGCTGAGATTTTTCTGGAACAACCATTTGCTGTAAAGGAAGGACAGACAGACAAGTCCCACACTCTGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233413.2 |
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| 3UTR CCA 90 bp | AAGAGTTGGAGAGGGTTTGGGTCACAGCAGCTTGACTCCAGAGTGTaGGACTTGTCTGTCTGTCCTTCCTTTACAGCAAATGGTTGTTCC | + |
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Preference number: 1 (lower is better) Translates to: KSWRGFGSQQLDSRV*DLSVCPSFTANGCS Trigger: GGAACAACCATTTGCTGTAAAGGAAGGACAGACAGACAAGTCCCACACTCTGGAGTCAAGCTGCTGTGACCCAAACCCTCTCCAACTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233413.2 |
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| 3UTR-3UTR TCA 90 bp | GGGCAGGAGGGCTTCCTTAGGCCTGAGAAAGAGCGGAAACCCACGTGGCACAGTTGGGTCACAGCAGCTTaGCTCCAGAGTGTGGGACTT | + |
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Preference number: 2 (lower is better) Translates to: GQEGFLRPEKERKPTWHSWVTAA*LQSVGL Trigger: AAGTCCCACACTCTGGAGTCAAGCTGCTGTGACCCA...ACTGTGCCACGTGGGTTTCCGCTCTTTCTCAGGCCTAAGGAAGCCCTCCTGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR GCA 90 bp | GGGTGTAATGTAATTGTCGCAGTTTCCAGCTCCCTAGAAGCTGAGCTTGCTGGGGCCAGGGCTCAGGGCTaGGTACTGGAGACCCGGCTC | + |
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Preference number: 2 (lower is better) Translates to: GCNVIVAVSSSLEAELAGARAQG*VLETRL Trigger: GAGCCGGGTCTCCAGTACGCAGCCCTGAGCCCTGGC...CCCAGCAAGCTCAGCTTCTAGGGAGCTGGAAACTGCGACAATTACATTACACCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGCTTCCTTAGGCCTGAGAAAGAGCGGAAACCCACGTGGCACAGTCAGAGCAAGGAGGAGGAAGAGTTaGAGAGGGTTTGGGTCACAG | + |
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Preference number: 2 (lower is better) Translates to: RASLGLRKSGNPRGTVRARRRKS*RGFGSQ Trigger: CTGTGACCCAAACCCTCTCCAACTCTTCCTCCTCCT...TGCTCTGACTGTGCCACGTGGGTTTCCGCTCTTTCTCAGGCCTAAGGAAGCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR CCA 90 bp | GGCCTGAGAAAGAGCGGAAACCCACGTGGCACAGTCAGAGCAGGAAATAGACCAAGGAGGAGGAAGAGTTaGAGAGGGTTTGGGTCACAG | + |
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Preference number: 2 (lower is better) Translates to: GLRKSGNPRGTVRAGNRPRRRKS*RGFGSQ Trigger: CTGTGACCCAAACCCTCTCCAACTCTTCCTCCTCCT...TGGTCTATTTCCTGCTCTGACTGTGCCACGTGGGTTTCCGCTCTTTCTCAGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR TCA 90 bp | GGGTGTAATGTAATTGTCGCAGTTTCCAGCTCCCTAGAAGCTGAGCTTGCTGGGTGGGTCACAGCAGCTTaGCTCCAGAGTGTGGGACTT | + |
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Preference number: 2 (lower is better) Translates to: GCNVIVAVSSSLEAELAGWVTAA*LQSVGL Trigger: AAGTCCCACACTCTGGAGTCAAGCTGCTGTGACCCA...CCCAGCAAGCTCAGCTTCTAGGGAGCTGGAAACTGCGACAATTACATTACACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR CCA 90 bp | GGCCTGAGAAAGAGCGGAAACCCACGTGGCACAGTCAGAGCAGGAAATAGACCAACCAGGAACAGGTGGTaGTGTCTAATGGAAGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: GLRKSGNPRGTVRAGNRPTRNRW*CLMEGK Trigger: CTTCCCTTCCATTAGACACCACCACCTGTTCCTGGT...TGGTCTATTTCCTGCTCTGACTGTGCCACGTGGGTTTCCGCTCTTTCTCAGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR TCA 90 bp | CAGAGCAGAGGATCTGGGGCCCAGGTAGACAAGTCTCTTAATGAAGTTGGTTCTCAGGATCAAAGGGCATaGCCCAGGGTAGACCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: QSRGSGAQVDKSLNEVGSQDQRA*PRVDLP Trigger: AGGAAGGTCTACCCTGGGTCATGCCCTTTGATCCTG...AGAACCAACTTCATTAAGAGACTTGTCTACCTGGGCCCCAGATCCTCTGCTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR CCA 90 bp | GTAATTGTCGCAGTTTCCAGCTCCCTAGAAGCTGAGCTTGCTGGGCAAGCAGGACTTGACTCCAGAGTGTaGGACTTGTCTGTCTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: VIVAVSSSLEAELAGQAGLDSRV*DLSVCP Trigger: AGGACAGACAGACAAGTCCCACACTCTGGAGTCAAG...TCCTGCTTGCCCAGCAAGCTCAGCTTCTAGGGAGCTGGAAACTGCGACAATTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTGGGACTTGTCTGTCTGTCCTTCCTTTACAGCAAATGGTTGTTCCAGAAAACTTGACTCCAGAGTGTaGGACTTGTCTGTCTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: VWDLSVCPSFTANGCSRKLDSRV*DLSVCP Trigger: AGGACAGACAGACAAGTCCCACACTCTGGAGTCAAG...TTTTCTGGAACAACCATTTGCTGTAAAGGAAGGACAGACAGACAAGTCCCACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233413.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAGCAGAGGATCTGGGGCCCAGGTAGACAAGTCTCTTAATGAAGTTGGTTCTTTCCTTTACAGCAAATaGTTGTTCCAGAAAAATCTC | + |
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Preference number: 2 (lower is better) Translates to: QSRGSGAQVDKSLNEVGSFLYSK*LFQKNL Trigger: GAGATTTTTCTGGAACAACCATTTGCTGTAAAGGAA...AGAACCAACTTCATTAAGAGACTTGTCTACCTGGGCCCCAGATCCTCTGCTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233413.2 |
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| 3UTR CCA 72 bp | GGGAAGGTGGCTGGGCCAGGGCTCAGGGCTGCGTACTaGAGACCCGGCTCCTTTCAGCTCCGCACAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: GKVAGPGLRAAY*RPGSFQLRTEQ Trigger: CTGCTCTGTGCGGAGCTGAAAGGAGCCGGGTCTCCAGTACGCAGCCCTGAGCCCTGGCCCAGCCACCTTCCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR CAA 90 bp | AAGGTGGCTGGGCCAGGGCTCAGGGCTGCGTACTGGAGACCCGGCTCCTTTCAGAGAGTTGGAGAGGGTTaGGGTCACAGCAGCTTGACT | + |
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Preference number: 3 (lower is better) Translates to: KVAGPGLRAAYWRPGSFQRVGEG*GHSSLT Trigger: AGTCAAGCTGCTGTGACCCAAACCCTCTCCAACTCT...CTGAAAGGAGCCGGGTCTCCAGTACGCAGCCCTGAGCCCTGGCCCAGCCACCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR-3UTR CAA 90 bp | GAAGGTGGCTGGGCCAGGGCTCAGGGCTGCGTACTGGAGACCCGGCTCCTTTCAAGAGTTGGAGAGGGTTaGGGTCACAGCAGCTTGACT | + |
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Preference number: 3 (lower is better) Translates to: EGGWARAQGCVLETRLLSRVGEG*GHSSLT Trigger: AGTCAAGCTGCTGTGACCCAAACCCTCTCCAACTCT...TGAAAGGAGCCGGGTCTCCAGTACGCAGCCCTGAGCCCTGGCCCAGCCACCTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR TCA 72 bp | GAGGAAGAGTTGGAGAGGGTTTGGGTCACAGCAGCTTaGCTCCAGAGTGTGGGACTTGTCTGTCTGTCCTTC | + |
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Preference number: 3 (lower is better) Translates to: EEELERVWVTAA*LQSVGLVCLSF Trigger: GAAGGACAGACAGACAAGTCCCACACTCTGGAGTCAAGCTGCTGTGACCCAAACCCTCTCCAACTCTTCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR CCA 72 bp | AGAGGGTTTGGGTCACAGCAGCTTGACTCCAGAGTGTaGGACTTGTCTGTCTGTCCTTCCTTTACAGCAAAT | + |
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Preference number: 3 (lower is better) Translates to: RGFGSQQLDSRV*DLSVCPSFTAN Trigger: ATTTGCTGTAAAGGAAGGACAGACAGACAAGTCCCACACTCTGGAGTCAAGCTGCTGTGACCCAAACCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233413.2 |
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| CDS-3UTR TCA 90 bp | AAGGTGGCTGGGCCAGGGCTCAGGGCTGCGTACTGGAGACCCGGCTCCTTTCAGGAATCACCCTGTGATTaGCACTGTCCCCAATGTGTC | + |
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Preference number: 4 (lower is better) Translates to: KVAGPGLRAAYWRPGSFQESPCD*HCPQCV Trigger: GACACATTGGGGACAGTGTCAATCACAGGGTGATTC...CTGAAAGGAGCCGGGTCTCCAGTACGCAGCCCTGAGCCCTGGCCCAGCCACCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| CDS-3UTR TCA 90 bp | GGAGGAAGAGTTGGAGAGGGTTTGGGTCACAGCAGCTTGACTCCAGAGTGTGGGGAATCACCCTGTGATTaGCACTGTCCCCAATGTGTC | + |
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Preference number: 4 (lower is better) Translates to: GGRVGEGLGHSSLTPECGESPCD*HCPQCV Trigger: GACACATTGGGGACAGTGTCAATCACAGGGTGATTC...CCCACACTCTGGAGTCAAGCTGCTGTGACCCAAACCCTCTCCAACTCTTCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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| 3UTR CAA 72 bp | GGAGGAAGAGTTGGAGAGGGTTTGGGTCACAGCAGCTaGACTCCAGAGTGTGGGACTTGTCTGTCTGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: GGRVGEGLGHSS*TPECGTCLSVL Trigger: AAGGACAGACAGACAAGTCCCACACTCTGGAGTCAAGCTGCTGTGACCCAAACCCTCTCCAACTCTTCCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051526.6 ENSMUST00000233413.2 |
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