RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PXDC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021411

Ensembl transcript IDs: ENSMUST00000021847.15, ENSMUST00000053459.15, ENSMUST00000125037.3

Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGTAGCTTTGGCCCTTGGAGGAGCACAGTAGACAGCATGAGGACATaGAGTCGAGGTTGGAGGCAGAGAAGGCCCGATGGAGAGGCTCAG +
Preference number: 1 (lower is better)
Translates to: SSFGPWRSTVDSMRT*SRGWRQRRPDGEAQ
Trigger: CTGAGCCTCTCCATCGGGCCTTCTCTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTCTACTGTGCTCCTCCAAGGGCCAAAGCTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR CCA 90 bp CAGCATGAGGACATGCAGTCGAGGTTGGAGGCAGAGAAGGCCCGATaGAGAGGCTCAGTCCAAAATGTCCGTCTCAAACGGAACCAAATG +
Preference number: 1 (lower is better)
Translates to: QHEDMQSRLEAEKAR*RGSVQNVRLKRNQM
Trigger: CATTTGGTTCCGTTTGAGACGGACATTTTGGACTGAGCCTCTCCATCGGGCCTTCTCTGCCTCCAACCTCGACTGCATGTCCTCATGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR GCA 90 bp CCATCTTCCAGCTCTGAGGTGAACTCACCACCATTCTCAAACAAATaGTCTGTGGAATCCGCATCCAGGAGCTGGTCCTTCCCGTTGGGT +
Preference number: 1 (lower is better)
Translates to: PSSSSEVNSPPFSNK*SVESASRSWSFPLG
Trigger: ACCCAACGGGAAGGACCAGCTCCTGGATGCGGATTCCACAGAGCATTTGTTTGAGAATGGTGGTGAGTTCACCTCAGAGCTGGAAGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR TCA 90 bp CCGCATCCAGGAGCTGGTCCTTCCCGTTGGGTATGCTGTGGTCAATaGCTATGGTCTCTGTGTTTGCCAAACAAAATCCATTGGACCTCA +
Preference number: 1 (lower is better)
Translates to: PHPGAGPSRWVCCGQ*LWSLCLPNKIHWTS
Trigger: TGAGGTCCAATGGATTTTGTTTGGCAAACACAGAGACCATAGTCATTGACCACAGCATACCCAACGGGAAGGACCAGCTCCTGGATGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
3UTR-3UTR GCA 90 bp CTGGCAGAAGAGCTGACAGGTGCTGGCAGTGAGGAGGACGCTCTCTTCCCTGGAGACAGCATGAGGACATaGAGTCGAGGTTGGAGGCAG +
Preference number: 2 (lower is better)
Translates to: LAEELTGAGSEEDALFPGDSMRT*SRGWRQ
Trigger: CTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTC...TCCAGGGAAGAGAGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR GCA 90 bp CTGGCAGAAGAGCTGACAGGTGCTGGCAGTGAGGAGGACGCTCTCTTCCCTGGAGATCCCGTGTGCCTCTaGTTTCTAAATACCCAGGCC +
Preference number: 2 (lower is better)
Translates to: LAEELTGAGSEEDALFPGDPVCL*FLNTQA
Trigger: GGCCTGGGTATTTAGAAAGCAGAGGCACACGGGATC...TCCAGGGAAGAGAGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR CCA 90 bp CACCGCCTGGCAGAAGAGCTGACAGGTGCTGGCAGTGAGGAGGACGCTCTCTTCAGACAAGAAGAAGCATaGCCTGGCATCCCAGAAGAG +
Preference number: 2 (lower is better)
Translates to: HRLAEELTGAGSEEDALFRQEEA*PGIPEE
Trigger: CTCTTCTGGGATGCCAGGCCATGCTTCTTCTTGTCT...GAAGAGAGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAGGCGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR CCA 90 bp ATCCCTTCCTTTCTGATCCATCCTGGCACTTGTGCCATTGAGGTCAGCAGGGGAAGAAGAAGCATGGCCTaGCATCCCAGAAGAGGCGGG +
Preference number: 2 (lower is better)
Translates to: IPSFLIHPGTCAIEVSRGRRSMA*HPRRGG
Trigger: CCCGCCTCTTCTGGGATGCCAGGCCATGCTTCTTCT...TCCCCTGCTGACCTCAATGGCACAAGTGCCAGGATGGATCAGAAAGGAAGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR TCA 90 bp ACTTGTGCCATTGAGGTCAGCAGGGGAAGGACTTCGAGCACCCTAGGCAGTGGTAATAGGACAAGTTGGTaGCATAAGCCTCTGGGTCGT +
Preference number: 2 (lower is better)
Translates to: TCAIEVSRGRTSSTLGSGNRTSW*HKPLGR
Trigger: ACGACCCAGAGGCTTATGTCACCAACTTGTCCTATT...ACCACTGCCTAGGGTGCTCGAAGTCCTTCCCCTGCTGACCTCAATGGCACAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR-3UTR TCA 90 bp CCGCATCACCGCCTGGCAGAAGAGCTGACAGGTGCTGGCAGTGAGGAGGACGCTATTTTAACAGGACTTTaGAAGCTGGGTTGGATCTTA +
Preference number: 2 (lower is better)
Translates to: PHHRLAEELTGAGSEEDAILTGL*KLGWIL
Trigger: TAAGATCCAACCCAGCTTTCAAAGTCCTGTTAAAAT...AGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAGGCGGTGATGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
3UTR-3UTR GCA 90 bp CAATCTTCTCCAGGCTTGATGTTGTGTAAACGCTCCTTCCGGCTCATCCCAAACGACAGCATGAGGACATaGAGTCGAGGTTGGAGGCAG +
Preference number: 2 (lower is better)
Translates to: QSSPGLMLCKRSFRLIPNDSMRT*SRGWRQ
Trigger: CTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTC...GTTTGGGATGAGCCGGAAGGAGCGTTTACACAACATCAAGCCTGGAGAAGATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR GCA 90 bp CTTAGGGAGGTCCTGAATCACTTAATATCCCCCGTCCACGAGGTCCAGAACTTGGATCCCGTGTGCCTCTaGTTTCTAAATACCCAGGCC +
Preference number: 2 (lower is better)
Translates to: LREVLNHLISPVHEVQNLDPVCL*FLNTQA
Trigger: GGCCTGGGTATTTAGAAAGCAGAGGCACACGGGATC...CAAGTTCTGGACCTCGTGGACGGGGGATATTAAGTGATTCAGGACCTCCCTAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR CCA 90 bp CATCCTGGCACTTGTGCCATTGAGGTCAGCAGGGGAAGGACTTCGAGCACCCTAGGACGCTCTCTTCCCTaGAAGAAAACTTTATATCAG +
Preference number: 2 (lower is better)
Translates to: HPGTCAIEVSRGRTSSTLGRSLP*KKTLYQ
Trigger: CTGATATAAAGTTTTCTTCCAGGGAAGAGAGCGTCC...TAGGGTGCTCGAAGTCCTTCCCCTGCTGACCTCAATGGCACAAGTGCCAGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR GCA 90 bp CAATCTTCTCCAGGCTTGATGTTGTGTAAACGCTCCTTCCGGCTCATCCCAAACCATCGGGATCCCGTGTaGCTCTGCTTTCTAAATACC +
Preference number: 2 (lower is better)
Translates to: QSSPGLMLCKRSFRLIPNHRDPV*LCFLNT
Trigger: GGTATTTAGAAAGCAGAGGCACACGGGATCCCGATG...GTTTGGGATGAGCCGGAAGGAGCGTTTACACAACATCAAGCCTGGAGAAGATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR TCA 90 bp TCTTCCAGCTCTGAGGTGAACTCACCACCATTCTCAAACAAATGCTCTGTGGAACTTCCAGCTCTGAGGTaGACTCACCACCATTCTCAA +
Preference number: 2 (lower is better)
Translates to: SSSSEVNSPPFSNKCSVELPALR*THHHSQ
Trigger: TTGAGAATGGTGGTGAGTTCACCTCAGAGCTGGAAG...TTCCACAGAGCATTTGTTTGAGAATGGTGGTGAGTTCACCTCAGAGCTGGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR-3UTR TCA 90 bp AGTGAGGAGGACGCTCTCTTCCCTGGAAGAAAACTTTATATCAGGTTCATATGCTCCCTAAGTCGGCAGTaGGACAAGAAGAAGCATGGC +
Preference number: 2 (lower is better)
Translates to: SEEDALFPGRKLYIRFICSLSRQ*DKKKHG
Trigger: GCCATGCTTCTTCTTGTCTCACTGCCGACTTAGGGA...GCATATGAACCTGATATAAAGTTTTCTTCCAGGGAAGAGAGCGTCCTCCTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR TCA 90 bp GAGGACGCTCTCTTCCCTGGAAGAAAACTTTATATCAGGTTCATATGCACAGGACTTCCAGCTCTGAGGTaGACTCACCACCATTCTCAA +
Preference number: 2 (lower is better)
Translates to: EDALFPGRKLYIRFICTGLPALR*THHHSQ
Trigger: TTGAGAATGGTGGTGAGTTCACCTCAGAGCTGGAAG...TCCTGTGCATATGAACCTGATATAAAGTTTTCTTCCAGGGAAGAGAGCGTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR-3UTR GCA 90 bp CTTAGGGAGGTCCTGAATCACTTAATATCCCCCGTCCACGAGGTCCAGAACTTGTATGGTCTCTGTGTTTaGCAAACAAAATCCATTGGA +
Preference number: 2 (lower is better)
Translates to: LREVLNHLISPVHEVQNLYGLCV*QTKSIG
Trigger: TCCAATGGATTTTGTTTGGCAAACACAGAGACCATA...CAAGTTCTGGACCTCGTGGACGGGGGATATTAAGTGATTCAGGACCTCCCTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
3UTR-3UTR TCA 90 bp GTGAGGAGGACGCTCTCTTCCCTGGAAGAAAACTTTATATCAGGTTCATATGCACTTTGTGTGTGCCTTTaGCACACAAGAGAAAAGTGG +
Preference number: 2 (lower is better)
Translates to: VRRTLSSLEENFISGSYALCVCL*HTREKW
Trigger: CCACTTTTCTCTTGTGTGTCAAAGGCACACACAAAG...TGCATATGAACCTGATATAAAGTTTTCTTCCAGGGAAGAGAGCGTCCTCCTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR TCA 72 bp TGGCCTGGCATCCCAGAAGAGGCGGGCTGGAGGGGCTaGGAGCAGGAAGAAGGCCCCTCGGTGCTGCCTATG +
Preference number: 3 (lower is better)
Translates to: WPGIPEEAGWRG*EQEEGPSVLPM
Trigger: CATAGGCAGCACCGAGGGGCCTTCTTCCTGCTCTCAGCCCCTCCAGCCCGCCTCTTCTGGGATGCCAGGCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR TCA 72 bp GGCAGTGGTGACCGCATCACCGCCTGGCAGAAGAGCTaGCAGGTGCTGGCAGTGAGGAGGACGCTCTCTTCC +
Preference number: 3 (lower is better)
Translates to: GSGDRITAWQKS*QVLAVRRTLSS
Trigger: GGAAGAGAGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAGGCGGTGATGCGGTCACCACTGCC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR GCA 72 bp GGAGGGGCTGAGAGCAGGAAGAAGGCCCCTCGGTGCTaGCTATGGTCATCGGGATCCCGTGTGCCTCTGCTT +
Preference number: 3 (lower is better)
Translates to: GGAESRKKAPRC*LWSSGSRVPLL
Trigger: AAGCAGAGGCACACGGGATCCCGATGACCATAGGCAGCACCGAGGGGCCTTCTTCCTGCTCTCAGCCCCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR TCA 72 bp CAGCAGGGGAAGGACTTCGAGCACCCTAGGCAGTGGTaGCCGCATCACCGCCTGGCAGAAGAGCTGACAGGT +
Preference number: 3 (lower is better)
Translates to: QQGKDFEHPRQW*PHHRLAEELTG
Trigger: ACCTGTCAGCTCTTCTGCCAGGCGGTGATGCGGTCACCACTGCCTAGGGTGCTCGAAGTCCTTCCCCTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR CAA 90 bp ATGAGGACATGCAGTCGAGGTTGGAGGCAGAGAAGGCCCGATGGAGAGGCTCAGGACATGCAGTCGAGGTaGGAGGCAGAGAAGGCCCGA +
Preference number: 3 (lower is better)
Translates to: MRTCSRGWRQRRPDGEAQDMQSR*EAEKAR
Trigger: TCGGGCCTTCTCTGCCTCCAACCTCGACTGCATGTC...CTGAGCCTCTCCATCGGGCCTTCTCTGCCTCCAACCTCGACTGCATGTCCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR-3UTR CAA 90 bp CCTAGGAGGTCCAGGCTGAGCAGTAGCTTTGGCCCTTGGAGGAGCACAGTAGACGACATGCAGTCGAGGTaGGAGGCAGAGAAGGCCCGA +
Preference number: 3 (lower is better)
Translates to: PRRSRLSSSFGPWRSTVDDMQSR*EAEKAR
Trigger: TCGGGCCTTCTCTGCCTCCAACCTCGACTGCATGTC...GTCTACTGTGCTCCTCCAAGGGCCAAAGCTACTGCTCAGCCTGGACCTCCTAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR CCA 72 bp AGCACAGTAGACAGCATGAGGACATGCAGTCGAGGTTaGAGGCAGAGAAGGCCCGATGGAGAGGCTCAGTCC +
Preference number: 3 (lower is better)
Translates to: STVDSMRTCSRG*RQRRPDGEAQS
Trigger: GGACTGAGCCTCTCCATCGGGCCTTCTCTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTCTACTGTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR CCA 72 bp GCTGAGAGCAGGAAGAAGGCCCCTCGGTGCTGCCTATaGTCATCGGGATCCCGTGTGCCTCTGCTTTCTAAA +
Preference number: 3 (lower is better)
Translates to: AESRKKAPRCCL*SSGSRVPLLSK
Trigger: TTTAGAAAGCAGAGGCACACGGGATCCCGATGACCATAGGCAGCACCGAGGGGCCTTCTTCCTGCTCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR TCA 72 bp CCCTTCCTTTCTGATCCATCCTGGCACTTGTGCCATTaGGGTCAGCAGGGGAAGGACTTCGAGCACCCTAGG +
Preference number: 3 (lower is better)
Translates to: PFLSDPSWHLCH*GQQGKDFEHPR
Trigger: CCTAGGGTGCTCGAAGTCCTTCCCCTGCTGACCTCAATGGCACAAGTGCCAGGATGGATCAGAAAGGAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR CCA 72 bp GACATGCAGTCGAGGTTGGAGGCAGAGAAGGCCCGATaGAGAGGCTCAGTCCAAAATGTCCGTCTCAAACGG +
Preference number: 3 (lower is better)
Translates to: DMQSRLEAEKAR*RGSVQNVRLKR
Trigger: CCGTTTGAGACGGACATTTTGGACTGAGCCTCTCCATCGGGCCTTCTCTGCCTCCAACCTCGACTGCATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR-3UTR CAA 90 bp ATGAGGACATGCAGTCGAGGTTGGAGGCAGAGAAGGCCCGATGGAGAGGCTCAGCTATGGTCTCTGTGTTaGCCAAACAAAATCCATTGG +
Preference number: 3 (lower is better)
Translates to: MRTCSRGWRQRRPDGEAQLWSLC*PNKIHW
Trigger: CCAATGGATTTTGTTTGGCAAACACAGAGACCATAG...CTGAGCCTCTCCATCGGGCCTTCTCTGCCTCCAACCTCGACTGCATGTCCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
3UTR-3UTR CAA 90 bp CATCCTGGCACTTGTGCCATTGAGGTCAGCAGGGGAAGGACTTCGAGCACCCTAACTTTGTGTGTGCCTTaGACACACAAGAGAAAAGTG +
Preference number: 3 (lower is better)
Translates to: HPGTCAIEVSRGRTSSTLTLCVP*THKRKV
Trigger: CACTTTTCTCTTGTGTGTCAAAGGCACACACAAAGT...TAGGGTGCTCGAAGTCCTTCCCCTGCTGACCTCAATGGCACAAGTGCCAGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR TCA 72 bp AAGCCTCTGGGTCGTCACCATCTTCCAGCTCTGAGGTaGACTCACCACCATTCTCAAACAAATGCTCTGTGG +
Preference number: 3 (lower is better)
Translates to: KPLGRHHLPALR*THHHSQTNALW
Trigger: CCACAGAGCATTTGTTTGAGAATGGTGGTGAGTTCACCTCAGAGCTGGAAGATGGTGACGACCCAGAGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR GCA 72 bp AGCTCTGAGGTGAACTCACCACCATTCTCAAACAAATaGTCTGTGGAATCCGCATCCAGGAGCTGGTCCTTC +
Preference number: 3 (lower is better)
Translates to: SSEVNSPPFSNK*SVESASRSWSF
Trigger: GAAGGACCAGCTCCTGGATGCGGATTCCACAGAGCATTTGTTTGAGAATGGTGGTGAGTTCACCTCAGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR CCA 72 bp GCATCCAGGAGCTGGTCCTTCCCGTTGGGTATGCTGTaGTCAATGACTATGGTCTCTGTGTTTGCCAAACAA +
Preference number: 3 (lower is better)
Translates to: ASRSWSFPLGML*SMTMVSVFAKQ
Trigger: TTGTTTGGCAAACACAGAGACCATAGTCATTGACCACAGCATACCCAACGGGAAGGACCAGCTCCTGGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
3UTR CCA 72 bp TCAAACAAATGCTCTGTGGAATCCGCATCCAGGAGCTaGTCCTTCCCGTTGGGTATGCTGTGGTCAATGACT +
Preference number: 3 (lower is better)
Translates to: SNKCSVESASRS*SFPLGMLWSMT
Trigger: AGTCATTGACCACAGCATACCCAACGGGAAGGACCAGCTCCTGGATGCGGATTCCACAGAGCATTTGTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
3UTR-3UTR CAA 90 bp TCCAGGCTGAGCAGTAGCTTTGGCCCTTGGAGGAGCACAGTAGACAGCATGAGGGCCAAACAAAATCCATaGGACCTCATGATTTCTGAT +
Preference number: 3 (lower is better)
Translates to: SRLSSSFGPWRSTVDSMRAKQNP*DLMISD
Trigger: ATCAGAAATCATGAGGTCCAATGGATTTTGTTTGGC...CCTCATGCTGTCTACTGTGCTCCTCCAAGGGCCAAAGCTACTGCTCAGCCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
3UTR TCA 72 bp GACATAAGCCTCTGGGTCGTCACCATCTTCCAGCTCTaGGGTGAACTCACCACCATTCTCAAACAAATGCTC +
Preference number: 3 (lower is better)
Translates to: DISLWVVTIFQL*GELTTILKQML
Trigger: GAGCATTTGTTTGAGAATGGTGGTGAGTTCACCTCAGAGCTGGAAGATGGTGACGACCCAGAGGCTTATGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR-3UTR CAA 90 bp ATCCCTTCCTTTCTGATCCATCCTGGCACTTGTGCCATTGAGGTCAGCAGGGGAACTTTGTGTGTGCCTTaGACACACAAGAGAAAAGTG +
Preference number: 3 (lower is better)
Translates to: IPSFLIHPGTCAIEVSRGTLCVP*THKRKV
Trigger: CACTTTTCTCTTGTGTGTCAAAGGCACACACAAAGT...TCCCCTGCTGACCTCAATGGCACAAGTGCCAGGATGGATCAGAAAGGAAGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR-3UTR CAA 90 bp CAGACCTTCTGTGGTCTAAGCTGTAAGCATCCCTTCCTTCCTTCCCATCCCTTCACTTTGTGTGTGCCTTaGACACACAAGAGAAAAGTG +
Preference number: 3 (lower is better)
Translates to: QTFCGLSCKHPFLPSHPFTLCVP*THKRKV
Trigger: CACTTTTCTCTTGTGTGTCAAAGGCACACACAAAGT...GAAGGGATGGGAAGGAAGGAAGGGATGCTTACAGCTTAGACCACAGAAGGTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
3UTR TCA 72 bp TCTCAAACGGAACCAAATGGTAATAGGACAAGTTGGTaGCATAAGCCTCTGGGTCGTCACCATCTTCCAGCT +
Preference number: 3 (lower is better)
Translates to: SQTEPNGNRTSW*HKPLGRHHLPA
Trigger: AGCTGGAAGATGGTGACGACCCAGAGGCTTATGTCACCAACTTGTCCTATTACCATTTGGTTCCGTTTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR-3UTR CAA 90 bp AGTGAGGAGGACGCTCTCTTCCCTGGAAGAAAACTTTATATCAGGTTCATATGCTATTTTAACAGGACTTaGAAAGCTGGGTTGGATCTT +
Preference number: 3 (lower is better)
Translates to: SEEDALFPGRKLYIRFICYFNRT*KAGLDL
Trigger: AAGATCCAACCCAGCTTTCAAAGTCCTGTTAAAATA...GCATATGAACCTGATATAAAGTTTTCTTCCAGGGAAGAGAGCGTCCTCCTCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CCGCATCACCGCCTGGCAGAAGAGCTGACAGGTGCTGGCAGTGAGGAGGACGCTCATCGCGGAGGCGCTTaGACAGGCGGCCCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: PHHRLAEELTGAGSEEDAHRGGA*TGGPGR
Trigger: CCGACCTGGGCCGCCTGTGCAAGCGCCTCCGCGATG...AGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAGGCGGTGATGCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CACCGCCTGGCAGAAGAGCTGACAGGTGCTGGCAGTGAGGAGGACGCTCTCTTCCATCGCGGAGGCGCTTaGACAGGCGGCCCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: HRLAEELTGAGSEEDALFHRGGA*TGGPGR
Trigger: CCGACCTGGGCCGCCTGTGCAAGCGCCTCCGCGATG...GAAGAGAGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAGGCGGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CCGCATCACCGCCTGGCAGAAGAGCTGACAGGTGCTGGCAGTGAGGAGGACGCTCCAGGTCGGCGAAGCTaGGGTGCAGGTAGAGCACGC +
Preference number: 4 (lower is better)
Translates to: PHHRLAEELTGAGSEEDAPGRRS*GAGRAR
Trigger: GCGTGCTCTACCTGCACCGCAGCTTCGCCGACCTGG...AGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAGGCGGTGATGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CTGGCAGAAGAGCTGACAGGTGCTGGCAGTGAGGAGGACGCTCTCTTCCCTGGACATCGCGGAGGCGCTTaGACAGGCGGCCCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: LAEELTGAGSEEDALFPGHRGGA*TGGPGR
Trigger: CCGACCTGGGCCGCCTGTGCAAGCGCCTCCGCGATG...TCCAGGGAAGAGAGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CCCAGGCCTGCTGAACCTCAGGACCCTAGGAGGTCCAGGCTGAGCAGTAGCTTTGCAGGTAGAGCACGCTaGGGTCCGACCACTCGGTGC +
Preference number: 4 (lower is better)
Translates to: PRPAEPQDPRRSRLSSSFAGRAR*GPTTRC
Trigger: GCACCGAGTGGTCGGACCGCAGCGTGCTCTACCTGC...AAAGCTACTGCTCAGCCTGGACCTCCTAGGGTCCTGAGGTTCAGCAGGCCTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CACCGCCTGGCAGAAGAGCTGACAGGTGCTGGCAGTGAGGAGGACGCTCTCTTCTGTTCACGAGCGACGTaGCCTCAAACACCGCCGAGG +
Preference number: 4 (lower is better)
Translates to: HRLAEELTGAGSEEDALFCSRAT*PQTPPR
Trigger: CCTCGGCGGTGTTTGAGGGCACGTCGCTCGTGAACA...GAAGAGAGCGTCCTCCTCACTGCCAGCACCTGTCAGCTCTTCTGCCAGGCGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CCTTGGAGGAGCACAGTAGACAGCATGAGGACATGCAGTCGAGGTTGGAGGCAGGCAGGTAGAGCACGCTaGGGTCCGACCACTCGGTGC +
Preference number: 4 (lower is better)
Translates to: PWRSTVDSMRTCSRGWRQAGRAR*GPTTRC
Trigger: GCACCGAGTGGTCGGACCGCAGCGTGCTCTACCTGC...CTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTCTACTGTGCTCCTCCAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CCCATCCCTTCCTTTCTGATCCATCCTGGCACTTGTGCCATTGAGGTCAGCAGGCCAGGTCGGCGAAGCTaGGGTGCAGGTAGAGCACGC +
Preference number: 4 (lower is better)
Translates to: PIPSFLIHPGTCAIEVSRPGRRS*GAGRAR
Trigger: GCGTGCTCTACCTGCACCGCAGCTTCGCCGACCTGG...CCTGCTGACCTCAATGGCACAAGTGCCAGGATGGATCAGAAAGGAAGGGATGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp GAGCACAGTAGACAGCATGAGGACATGCAGTCGAGGTTGGAGGCAGAGAAGGCCTGTTCACGAGCGACGTaGCCTCAAACACCGCCGAGG +
Preference number: 4 (lower is better)
Translates to: EHSRQHEDMQSRLEAEKACSRAT*PQTPPR
Trigger: CCTCGGCGGTGTTTGAGGGCACGTCGCTCGTGAACA...GGCCTTCTCTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTCTACTGTGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CCTGCTGAACCTCAGGACCCTAGGAGGTCCAGGCTGAGCAGTAGCTTTGGCCCTGGTCCGACCACTCGGTaGGGATTTCGAAGAACTCCT +
Preference number: 4 (lower is better)
Translates to: PAEPQDPRRSRLSSSFGPGPTTR*GFRRTP
Trigger: AGGAGTTCTTCGAAATCCGCACCGAGTGGTCGGACC...AGGGCCAAAGCTACTGCTCAGCCTGGACCTCCTAGGGTCCTGAGGTTCAGCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp GAGCACAGTAGACAGCATGAGGACATGCAGTCGAGGTTGGAGGCAGAGAAGGCCGGTCCGACCACTCGGTaGGGATTTCGAAGAACTCCT +
Preference number: 4 (lower is better)
Translates to: EHSRQHEDMQSRLEAEKAGPTTR*GFRRTP
Trigger: AGGAGTTCTTCGAAATCCGCACCGAGTGGTCGGACC...GGCCTTCTCTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTCTACTGTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp GGTGAACTCACCACCATTCTCAAACAAATGCTCTGTGGAATCCGCATCCAGGAGGCAGGTAGAGCACGCTaGGGTCCGACCACTCGGTGC +
Preference number: 4 (lower is better)
Translates to: GELTTILKQMLCGIRIQEAGRAR*GPTTRC
Trigger: GCACCGAGTGGTCGGACCGCAGCGTGCTCTACCTGC...CTCCTGGATGCGGATTCCACAGAGCATTTGTTTGAGAATGGTGGTGAGTTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
CDS-3UTR GCA 90 bp CAGGTGCTGGCAGTGAGGAGGACGCTCTCTTCCCTGGAAGAAAACTTTATATCACCAGGTCGGCGAAGCTaGGGTGCAGGTAGAGCACGC +
Preference number: 4 (lower is better)
Translates to: QVLAVRRTLSSLEENFISPGRRS*GAGRAR
Trigger: GCGTGCTCTACCTGCACCGCAGCTTCGCCGACCTGG...TGATATAAAGTTTTCTTCCAGGGAAGAGAGCGTCCTCCTCACTGCCAGCACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR TCA 90 bp CCTTGGAGGAGCACAGTAGACAGCATGAGGACATGCAGTCGAGGTTGGAGGCAGCTTCCAGCTCTGAGGTaGACTCACCACCATTCTCAA +
Preference number: 4 (lower is better)
Translates to: PWRSTVDSMRTCSRGWRQLPALR*THHHSQ
Trigger: TTGAGAATGGTGGTGAGTTCACCTCAGAGCTGGAAG...CTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTCTACTGTGCTCCTCCAAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053459.15
CDS-3UTR GCA 90 bp GAGGTGAACTCACCACCATTCTCAAACAAATGCTCTGTGGAATCCGCATCCAGGTGTTCACGAGCGACGTaGCCTCAAACACCGCCGAGG +
Preference number: 4 (lower is better)
Translates to: EVNSPPFSNKCSVESASRCSRAT*PQTPPR
Trigger: CCTCGGCGGTGTTTGAGGGCACGTCGCTCGTGAACA...CCTGGATGCGGATTCCACAGAGCATTTGTTTGAGAATGGTGGTGAGTTCACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
3UTR CAA 72 bp TCTGTGGAATCCGCATCCAGGAGCTGGTCCTTCCCGTaGGGTATGCTGTGGTCAATGACTATGGTCTCTGTG +
Preference number: 4 (lower is better)
Translates to: SVESASRSWSFP*GMLWSMTMVSV
Trigger: CACAGAGACCATAGTCATTGACCACAGCATACCCAACGGGAAGGACCAGCTCCTGGATGCGGATTCCACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
CDS-3UTR TCA 90 bp CCCATCCCTTCCTTTCTGATCCATCCTGGCACTTGTGCCATTGAGGTCAGCAGGGCTTCTCGACCTCATTaGGCCTGGTCTCTATGTCAT +
Preference number: 4 (lower is better)
Translates to: PIPSFLIHPGTCAIEVSRASRPH*AWSLCH
Trigger: ATGACATAGAGACCAGGCTCAATGAGGTCGAGAAGC...CCTGCTGACCTCAATGGCACAAGTGCCAGGATGGATCAGAAAGGAAGGGATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR CCA 90 bp CATCCTGGCACTTGTGCCATTGAGGTCAGCAGGGGAAGGACTTCGAGCACCCTAGAACAACCTCAGACCTaGAATACTTACACGGCATGC +
Preference number: 4 (lower is better)
Translates to: HPGTCAIEVSRGRTSSTLEQPQT*NTYTAC
Trigger: GCATGCCGTGTAAGTATTCCAGGTCTGAGGTTGTTC...TAGGGTGCTCGAAGTCCTTCCCCTGCTGACCTCAATGGCACAAGTGCCAGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS-3UTR TCA 90 bp CCCTTGGAGGAGCACAGTAGACAGCATGAGGACATGCAGTCGAGGTTGGAGGCAGTATGCTGTGGTCAATaGCTATGGTCTCTGTGTTTG +
Preference number: 4 (lower is better)
Translates to: PLEEHSRQHEDMQSRLEAVCCGQ*LWSLCL
Trigger: CAAACACAGAGACCATAGTCATTGACCACAGCATAC...TGCCTCCAACCTCGACTGCATGTCCTCATGCTGTCTACTGTGCTCCTCCAAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053459.15
CDS-3UTR TCA 90 bp TCACCACCATTCTCAAACAAATGCTCTGTGGAATCCGCATCCAGGAGCTGGTCCGCTTCTCGACCTCATTaGGCCTGGTCTCTATGTCAT +
Preference number: 4 (lower is better)
Translates to: SPPFSNKCSVESASRSWSASRPH*AWSLCH
Trigger: ATGACATAGAGACCAGGCTCAATGAGGTCGAGAAGC...GGACCAGCTCCTGGATGCGGATTCCACAGAGCATTTGTTTGAGAATGGTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
CDS-3UTR TCA 90 bp GAGGTGAACTCACCACCATTCTCAAACAAATGCTCTGTGGAATCCGCATCCAGGGCTTCTCGACCTCATTaGGCCTGGTCTCTATGTCAT +
Preference number: 4 (lower is better)
Translates to: EVNSPPFSNKCSVESASRASRPH*AWSLCH
Trigger: ATGACATAGAGACCAGGCTCAATGAGGTCGAGAAGC...CCTGGATGCGGATTCCACAGAGCATTTGTTTGAGAATGGTGGTGAGTTCACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000125037.3
CDS-3UTR TCA 90 bp GAGGTGAACTCACCACCATTCTCAAACAAATGCTCTGTGGAATCCGCATCCAGGATGCTTTCCTGGGGCTaGAGATACGCTCAGCAGTTA +
Preference number: 4 (lower is better)
Translates to: EVNSPPFSNKCSVESASRMLSWG*RYAQQL
Trigger: TAACTGCTGAGCGTATCTTCAGCCCCAGGAAAGCAT...CCTGGATGCGGATTCCACAGAGCATTTGTTTGAGAATGGTGGTGAGTTCACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS-3UTR TCA 90 bp CCTAGGAGGTCCAGGCTGAGCAGTAGCTTTGGCCCTTGGAGGAGCACAGTAGACGGACCTCATGATTTCTaGTATTTTAACAGGACTTTG +
Preference number: 4 (lower is better)
Translates to: PRRSRLSSSFGPWRSTVDGPHDF*YFNRTL
Trigger: CAAAGTCCTGTTAAAATATCAGAAATCATGAGGTCC...GTCTACTGTGCTCCTCCAAGGGCCAAAGCTACTGCTCAGCCTGGACCTCCTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053459.15
CDS-3UTR TCA 90 bp ATCCTTCTTAGGGAGGTCCTGAATCACTTAATATCCCCCGTCCACGAGGTCCAGAATAGGACAAGTTGGTaGCATAAGCCTCTGGGTCGT +
Preference number: 4 (lower is better)
Translates to: ILLREVLNHLISPVHEVQNRTSW*HKPLGR
Trigger: ACGACCCAGAGGCTTATGTCACCAACTTGTCCTATT...CTGGACCTCGTGGACGGGGGATATTAAGTGATTCAGGACCTCCCTAAGAAGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053459.15
CDS-3UTR GCA 90 bp ACTTGTGCCATTGAGGTCAGCAGGGGAAGGACTTCGAGCACCCTAGGCAGTGGTATGATTTCTCAGAAATaGTTTCCTGGGGCTGAAGAT +
Preference number: 4 (lower is better)
Translates to: TCAIEVSRGRTSSTLGSGMISQK*FPGAED
Trigger: ATCTTCAGCCCCAGGAAAGCATTTCTGAGAAATCAT...ACCACTGCCTAGGGTGCTCGAAGTCCTTCCCCTGCTGACCTCAATGGCACAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS-3UTR TCA 90 bp GTGTGTGCCTTTGACACACAAGAGAAAAGTGGGGAGTCAGGGCCATGTGACCAAATCTTTCAAAGAAGGTaGGAACAACCTCAGACCTGG +
Preference number: 4 (lower is better)
Translates to: VCAFDTQEKSGESGPCDQIFQRR*EQPQTW
Trigger: CCAGGTCTGAGGTTGTTCTCACCTTCTTTGAAAGAT...TTGGTCACATGGCCCTGACTCCCCACTTTTCTCTTGTGTGTCAAAGGCACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS-3UTR GCA 90 bp CACAGTAGACAGCATGAGGACATGCAGTCGAGGTTGGAGGCAGAGAAGGCCCGATATGGTCTCTGTGTTTaGCAAACAAAATCCATTGGA +
Preference number: 4 (lower is better)
Translates to: HSRQHEDMQSRLEAEKARYGLCV*QTKSIG
Trigger: TCCAATGGATTTTGTTTGGCAAACACAGAGACCATA...TCGGGCCTTCTCTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTCTACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS-3UTR CCA 90 bp ACGCTCCTTCCGGCTCATCCCAAACCCAGATTCCAGGGAGCAGATGTAAAGAAACAGGACTTTGAAAGCTaGGTTGGATCTTATGGACAT +
Preference number: 4 (lower is better)
Translates to: TLLPAHPKPRFQGADVKKQDFES*VGSYGH
Trigger: ATGTCCATAAGATCCAACCCAGCTTTCAAAGTCCTG...TTTCTTTACATCTGCTCCCTGGAATCTGGGTTTGGGATGAGCCGGAAGGAGCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS-3UTR CCA 90 bp CAGACCTTCTGTGGTCTAAGCTGTAAGCATCCCTTCCTTCCTTCCCATCCCTTCCAGGACTTTGAAAGCTaGGTTGGATCTTATGGACAT +
Preference number: 4 (lower is better)
Translates to: QTFCGLSCKHPFLPSHPFQDFES*VGSYGH
Trigger: ATGTCCATAAGATCCAACCCAGCTTTCAAAGTCCTG...GAAGGGATGGGAAGGAAGGAAGGGATGCTTACAGCTTAGACCACAGAAGGTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS-3UTR TCA 90 bp GTGTGTGCCTTTGACACACAAGAGAAAAGTGGGGAGTCAGGGCCATGTGACCAAGCCTTCTTTAGCCTCTaGTATTTTAACAGGACTTTG +
Preference number: 4 (lower is better)
Translates to: VCAFDTQEKSGESGPCDQAFFSL*YFNRTL
Trigger: CAAAGTCCTGTTAAAATATCAGAGGCTAAAGAAGGC...TTGGTCACATGGCCCTGACTCCCCACTTTTCTCTTGTGTGTCAAAGGCACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS-3UTR TCA 90 bp CAATCTTCTCCAGGCTTGATGTTGTGTAAACGCTCCTTCCGGCTCATCCCAAACGCAGTTAAGAATACTTaGTGTTCTTCCAGAAGACCC +
Preference number: 4 (lower is better)
Translates to: QSSPGLMLCKRSFRLIPNAVKNT*CSSRRP
Trigger: GGGTCTTCTGGAAGAACATCAAGTATTCTTAACTGC...GTTTGGGATGAGCCGGAAGGAGCGTTTACACAACATCAAGCCTGGAGAAGATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS-3UTR GCA 90 bp CATTCTCAAACAAATGCTCTGTGGAATCCGCATCCAGGAGCTGGTCCTTCCCGTTATGGTCTCTGTGTTTaGCAAACAAAATCCATTGGA +
Preference number: 4 (lower is better)
Translates to: HSQTNALWNPHPGAGPSRYGLCV*QTKSIG
Trigger: TCCAATGGATTTTGTTTGGCAAACACAGAGACCATA...ACGGGAAGGACCAGCTCCTGGATGCGGATTCCACAGAGCATTTGTTTGAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS-3UTR CCA 90 bp CTTCCCTGGAAGAAAACTTTATATCAGGTTCATATGCACAGGACCATGAATGCTGAACAACCTCAGACCTaGAATACTTACACGGCATGC +
Preference number: 4 (lower is better)
Translates to: LPWKKTLYQVHMHRTMNAEQPQT*NTYTAC
Trigger: GCATGCCGTGTAAGTATTCCAGGTCTGAGGTTGTTC...AGCATTCATGGTCCTGTGCATATGAACCTGATATAAAGTTTTCTTCCAGGGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS-3UTR TCA 90 bp AGTGAGGAGGACGCTCTCTTCCCTGGAAGAAAACTTTATATCAGGTTCATATGCATCCATTGGACCTCATaGTTTCTCAGAAATGCTTTC +
Preference number: 4 (lower is better)
Translates to: SEEDALFPGRKLYIRFICIHWTS*FLRNAF
Trigger: GAAAGCATTTCTGAGAAATCATGAGGTCCAATGGAT...GCATATGAACCTGATATAAAGTTTTCTTCCAGGGAAGAGAGCGTCCTCCTCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS GCA 90 bp GCGCCAGCTCAGACCGGTCCTCGGGGAAGGCATCGCGGAGGCGCTTaGACAGGCGGCCCAGGTCGGCGAAGCTGCGGTGCAGGTAGAGCA +
Preference number: 5 (lower is better)
Translates to: APAQTGPRGRHRGGA*TGGPGRRSCGAGRA
Trigger: TGCTCTACCTGCACCGCAGCTTCGCCGACCTGGGCCGCCTGTGCAAGCGCCTCCGCGATGCCTTCCCCGAGGACCGGTCTGAGCTGGCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS GCA 90 bp AGCCTGGTCTCTATGTCATGTGCACCCTTGATGGCGAGCAGTCCTTaGCGCAGCGGCGTGCGCGCCAGCTCAGACCGGTCCTCGGGGAAG +
Preference number: 5 (lower is better)
Translates to: SLVSMSCAPLMASSP*RSGVRASSDRSSGK
Trigger: CTTCCCCGAGGACCGGTCTGAGCTGGCGCGCACGCCGCTGCGGCAAGGACTGCTCGCCATCAAGGGTGCACATGACATAGAGACCAGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS GCA 90 bp ACAGGCGGCCCAGGTCGGCGAAGCTGCGGTGCAGGTAGAGCACGCTaGGGTCCGACCACTCGGTGCGGATTTCGAAGAACTCCTCCTCAT +
Preference number: 5 (lower is better)
Translates to: TGGPGRRSCGAGRAR*GPTTRCGFRRTPPH
Trigger: ATGAGGAGGAGTTCTTCGAAATCCGCACCGAGTGGTCGGACCGCAGCGTGCTCTACCTGCACCGCAGCTTCGCCGACCTGGGCCGCCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS GCA 90 bp CTCCAGCAGCTTCTCGACCTCATTGAGCCTGGTCTCTATGTCATGTaGACCCTTGATGGCGAGCAGTCCTTGCCGCAGCGGCGTGCGCGC +
Preference number: 5 (lower is better)
Translates to: LQQLLDLIEPGLYVM*TLDGEQSLPQRRAR
Trigger: GCGCGCACGCCGCTGCGGCAAGGACTGCTCGCCATCAAGGGTGCACATGACATAGAGACCAGGCTCAATGAGGTCGAGAAGCTGCTGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS-3UTR CAA 90 bp AGGAGCACAGTAGACAGCATGAGGACATGCAGTCGAGGTTGGAGGCAGAGAAGGGCCAAACAAAATCCATaGGACCTCATGATTTCTCAG +
Preference number: 5 (lower is better)
Translates to: RSTVDSMRTCSRGWRQRRAKQNP*DLMISQ
Trigger: CTGAGAAATCATGAGGTCCAATGGATTTTGTTTGGC...CCTTCTCTGCCTCCAACCTCGACTGCATGTCCTCATGCTGTCTACTGTGCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS-3UTR CAA 90 bp CATCCTGGCACTTGTGCCATTGAGGTCAGCAGGGGAAGGACTTCGAGCACCCTATATTTTAACAGGACTTaGAAAGCTGGGTTGGATCTT +
Preference number: 5 (lower is better)
Translates to: HPGTCAIEVSRGRTSSTLYFNRT*KAGLDL
Trigger: AAGATCCAACCCAGCTTTCAAAGTCCTGTTAAAATA...TAGGGTGCTCGAAGTCCTTCCCCTGCTGACCTCAATGGCACAAGTGCCAGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS-3UTR CAA 90 bp ATCCTTCTTAGGGAGGTCCTGAATCACTTAATATCCCCCGTCCACGAGGTCCAGCTATGGTCTCTGTGTTaGCCAAACAAAATCCATTGG +
Preference number: 5 (lower is better)
Translates to: ILLREVLNHLISPVHEVQLWSLC*PNKIHW
Trigger: CCAATGGATTTTGTTTGGCAAACACAGAGACCATAG...CTGGACCTCGTGGACGGGGGATATTAAGTGATTCAGGACCTCCCTAAGAAGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS-3UTR CAA 90 bp CAATCTTCTCCAGGCTTGATGTTGTGTAAACGCTCCTTCCGGCTCATCCCAAACCTATGGTCTCTGTGTTaGCCAAACAAAATCCATTGG +
Preference number: 5 (lower is better)
Translates to: QSSPGLMLCKRSFRLIPNLWSLC*PNKIHW
Trigger: CCAATGGATTTTGTTTGGCAAACACAGAGACCATAG...GTTTGGGATGAGCCGGAAGGAGCGTTTACACAACATCAAGCCTGGAGAAGATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS TCA 90 bp GTCTACCACTCCAGTTCTGAGAGCTCCAGTGCCTTCTTTAGCCTCTaGTATTTTAACAGGACTTTGAAAGCTGGGTTGGATCTTATGGAC +
Preference number: 5 (lower is better)
Translates to: VYHSSSESSSAFFSL*YFNRTLKAGLDLMD
Trigger: GTCCATAAGATCCAACCCAGCTTTCAAAGTCCTGTTAAAATATCAGAGGCTAAAGAAGGCACTGGAGCTCTCAGAACTGGAGTGGTAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS TCA 90 bp AAATCCATTGGACCTCATGATTTCTCAGAAATGCTTTCCTGGGGCTaGAGATACGCTCAGCAGTTAAGAATACTTGATGTTCTTCCAGAA +
Preference number: 5 (lower is better)
Translates to: KSIGPHDFSEMLSWG*RYAQQLRILDVLPE
Trigger: TTCTGGAAGAACATCAAGTATTCTTAACTGCTGAGCGTATCTTCAGCCCCAGGAAAGCATTTCTGAGAAATCATGAGGTCCAATGGATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS GCA 72 bp CAGACCGGTCCTCGGGGAAGGCATCGCGGAGGCGCTTaGACAGGCGGCCCAGGTCGGCGAAGCTGCGGTGCA +
Preference number: 6 (lower is better)
Translates to: QTGPRGRHRGGA*TGGPGRRSCGA
Trigger: TGCACCGCAGCTTCGCCGACCTGGGCCGCCTGTGCAAGCGCCTCCGCGATGCCTTCCCCGAGGACCGGTCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS GCA 72 bp GGAGGCGCTTGCACAGGCGGCCCAGGTCGGCGAAGCTaGGGTGCAGGTAGAGCACGCTGCGGTCCGACCACT +
Preference number: 6 (lower is better)
Translates to: GGACTGGPGRRS*GAGRARCGPTT
Trigger: AGTGGTCGGACCGCAGCGTGCTCTACCTGCACCGCAGCTTCGCCGACCTGGGCCGCCTGTGCAAGCGCCTCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS CAA 90 bp GAGCCTGGTCTCTATGTCATGTGCACCCTTGATGGCGAGCAGTCCTaGCCGCAGCGGCGTGCGCGCCAGCTCAGACCGGTCCTCGGGGAA +
Preference number: 6 (lower is better)
Translates to: EPGLYVMCTLDGEQS*PQRRARQLRPVLGE
Trigger: TTCCCCGAGGACCGGTCTGAGCTGGCGCGCACGCCGCTGCGGCAAGGACTGCTCGCCATCAAGGGTGCACATGACATAGAGACCAGGCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS GCA 72 bp GGTGCAGGTAGAGCACGCTGCGGTCCGACCACTCGGTaGGGATTTCGAAGAACTCCTCCTCATCGCCGCGCC +
Preference number: 6 (lower is better)
Translates to: GAGRARCGPTTR*GFRRTPPHRRA
Trigger: GGCGCGGCGATGAGGAGGAGTTCTTCGAAATCCGCACCGAGTGGTCGGACCGCAGCGTGCTCTACCTGCACC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS GCA 72 bp CCAGGTCGGCGAAGCTGCGGTGCAGGTAGAGCACGCTaGGGTCCGACCACTCGGTGCGGATTTCGAAGAACT +
Preference number: 6 (lower is better)
Translates to: PGRRSCGAGRAR*GPTTRCGFRRT
Trigger: AGTTCTTCGAAATCCGCACCGAGTGGTCGGACCGCAGCGTGCTCTACCTGCACCGCAGCTTCGCCGACCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS CAA 90 bp AGCTTCTCGACCTCATTGAGCCTGGTCTCTATGTCATGTGCACCCTaGATGGCGAGCAGTCCTTGCCGCAGCGGCGTGCGCGCCAGCTCA +
Preference number: 6 (lower is better)
Translates to: SFSTSLSLVSMSCAP*MASSPCRSGVRASS
Trigger: TGAGCTGGCGCGCACGCCGCTGCGGCAAGGACTGCTCGCCATCAAGGGTGCACATGACATAGAGACCAGGCTCAATGAGGTCGAGAAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS CAA 72 bp ACCTCATTGAGCCTGGTCTCTATGTCATGTGCACCCTaGATGGCGAGCAGTCCTTGCCGCAGCGGCGTGCGC +
Preference number: 6 (lower is better)
Translates to: TSLSLVSMSCAP*MASSPCRSGVR
Trigger: GCGCACGCCGCTGCGGCAAGGACTGCTCGCCATCAAGGGTGCACATGACATAGAGACCAGGCTCAATGAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS GCA 72 bp CTTCTCGACCTCATTGAGCCTGGTCTCTATGTCATGTaGACCCTTGATGGCGAGCAGTCCTTGCCGCAGCGG +
Preference number: 6 (lower is better)
Translates to: LLDLIEPGLYVM*TLDGEQSLPQR
Trigger: CCGCTGCGGCAAGGACTGCTCGCCATCAAGGGTGCACATGACATAGAGACCAGGCTCAATGAGGTCGAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS CAA 90 bp TTACACGGCATGCTGATGACCGTCTCCAGCAGCTTCTCGACCTCATaGAGCCTGGTCTCTATGTCATGTGCACCCTTGATGGCGAGCAGT +
Preference number: 6 (lower is better)
Translates to: LHGMLMTVSSSFSTS*SLVSMSCAPLMASS
Trigger: ACTGCTCGCCATCAAGGGTGCACATGACATAGAGACCAGGCTCAATGAGGTCGAGAAGCTGCTGGAGACGGTCATCAGCATGCCGTGTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS CAA 90 bp AATAACGGCATGCTGATGACCGTCTCCAGCAGCTTCTCGACCTCATaGAGCCTGGTCTCTATGTCATGTGCACCCTTGATGGCGAGCAGT +
Preference number: 6 (lower is better)
Translates to: NNGMLMTVSSSFSTS*SLVSMSCAPLMASS
Trigger: ACTGCTCGCCATCAAGGGTGCACATGACATAGAGACCAGGCTCAATGAGGTCGAGAAGCTGCTGGAGACGGTCATCAGCATGCCGTTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125037.3
CDS CAA 72 bp ATGCTGATGACCGTCTCCAGCAGCTTCTCGACCTCATaGAGCCTGGTCTCTATGTCATGTGCACCCTTGATG +
Preference number: 6 (lower is better)
Translates to: MLMTVSSSFSTS*SLVSMSCAPLM
Trigger: CATCAAGGGTGCACATGACATAGAGACCAGGCTCAATGAGGTCGAGAAGCTGCTGGAGACGGTCATCAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
ENSMUST00000125037.3
CDS TCA 72 bp CTGGGGCTGAAGATACGCTCAGCAGTTAAGAATACTTaGTGTTCTTCCAGAAGACCCACACTCAGTTCCCAG +
Preference number: 6 (lower is better)
Translates to: LGLKIRSAVKNT*CSSRRPTLSSQ
Trigger: CTGGGAACTGAGTGTGGGTCTTCTGGAAGAACATCAAGTATTCTTAACTGCTGAGCGTATCTTCAGCCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS TCA 72 bp TTAACACCTGATCCAAAGGCGATCTTTCAAAGAAGGTaGGAACAACCTCAGACCTGGAATACTTACACGGCA +
Preference number: 6 (lower is better)
Translates to: LTPDPKAIFQRR*EQPQTWNTYTA
Trigger: TGCCGTGTAAGTATTCCAGGTCTGAGGTTGTTCTCACCTTCTTTGAAAGATCGCCTTTGGATCAGGTGTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021847.15
ENSMUST00000053459.15
CDS TCA 72 bp GGACCTCATGATTTCTCAGAAATGCTTTCCTGGGGCTaGAGATACGCTCAGCAGTTAAGAATACTTGATGTT +
Preference number: 6 (lower is better)
Translates to: GPHDFSEMLSWG*RYAQQLRILDV
Trigger: AACATCAAGTATTCTTAACTGCTGAGCGTATCTTCAGCCCCAGGAAAGCATTTCTGAGAAATCATGAGGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15
CDS TCA 72 bp GTGCCTTCTTTAGCCTCTGATATTTTAACAGGACTTTaGAAGCTGGGTTGGATCTTATGGACATTATCATTT +
Preference number: 6 (lower is better)
Translates to: VPSLASDILTGL*KLGWILWTLSF
Trigger: AAATGATAATGTCCATAAGATCCAACCCAGCTTTCAAAGTCCTGTTAAAATATCAGAGGCTAAAGAAGGCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021847.15