Pregenerated sensors for PWP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032834Ensembl transcript IDs: ENSMUST00000042556.11
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTCCGGGCTGGAGGGTCTCGGGGTCTCTGGCACCTCCCACTTCCTaGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATCAGGCCGT | + |
|
Preference number: 1 (lower is better) Translates to: SPGWRVSGSLAPPTS*AQEHSGFISSQSGR Trigger: ACGGCCTGATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGGAGGTGCCAGAGACCCCGAGACCCTCCAGCCCGGACT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CCA 90 bp | AGCAGTCTCACAGGAAGAGTCCGGGCTGGAGGGTCTCGGGGTCTCTaGCACCTCCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCT | + |
|
Preference number: 1 (lower is better) Translates to: SSLTGRVRAGGSRGL*HLPLPGPRSTVVSS Trigger: AGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGGAGGTGCCAGAGACCCCGAGACCCTCCAGCCCGGACTCTTCCTGTGAGACTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CCA 90 bp | CTGTACATACTGGCAAAGATCAGTCCAAGCTTCCCTGGCCAGCCTTaGGCTGTCACAGCCACCCGCTGGGGTCAGCCCAGCACACACCAT | + |
|
Preference number: 1 (lower is better) Translates to: LYILAKISPSFPGQP*AVTATRWGQPSTHH Trigger: ATGGTGTGTGCTGGGCTGACCCCAGCGGGTGGCTGTGACAGCCCAAGGCTGGCCAGGGAAGCTTGGACTGATCTTTGCCAGTATGTACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CCA 90 bp | AGTCCAAGCTTCCCTGGCCAGCCTTGGGCTGTCACAGCCACCCGCTaGGGTCAGCCCAGCACACACCATTTCTTCACTACTTACAGATAT | + |
|
Preference number: 1 (lower is better) Translates to: SPSFPGQPWAVTATR*GQPSTHHFFTTYRY Trigger: ATATCTGTAAGTAGTGAAGAAATGGTGTGTGCTGGGCTGACCCCAGCGGGTGGCTGTGACAGCCCAAGGCTGGCCAGGGAAGCTTGGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR GCA 90 bp | GAGTATGACAAGGGTGCGACAGCTAATGGCTCTCAGTGCACCAGGTaGCACACAGATCCATTCCTGTGGCCTGGACAGAGGCCAGTGAAT | + |
|
Preference number: 1 (lower is better) Translates to: EYDKGATANGSQCTR*HTDPFLWPGQRPVN Trigger: ATTCACTGGCCTCTGTCCAGGCCACAGGAATGGATCTGTGTGGCACCTGGTGCACTGAGAGCCATTAGCTGTCGCACCCTTGTCATACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR TCA 90 bp | AGTTATCAGCATGAGTTGGCACCTGTGGGTCTCTTCACTGGCGAGTaGCATGCTGGGCCTGGTCAACCCCATGAACAGGAAGTATCGGTA | + |
|
Preference number: 1 (lower is better) Translates to: SYQHELAPVGLFTGE*HAGPGQPHEQEVSV Trigger: TACCGATACTTCCTGTTCATGGGGTTGACCAGGCCCAGCATGTCACTCGCCAGTGAAGAGACCCACAGGTGCCAACTCATGCTGATAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR-3UTR CCA 90 bp | CTCAGTGCACCAGGTGCCACACAGATCCATTCCTGTGGCCTGGACAGAGGCCAGTTCCCTGGCCAGCCTTaGGCTGTCACAGCCACCCGC | + |
|
Preference number: 2 (lower is better) Translates to: LSAPGATQIHSCGLDRGQFPGQP*AVTATR Trigger: GCGGGTGGCTGTGACAGCCCAAGGCTGGCCAGGGAA...CTGGCCTCTGTCCAGGCCACAGGAATGGATCTGTGTGGCACCTGGTGCACTGAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CAA 90 bp | CCTGTACATACTGGCAAAGATCAGTCCAAGCTTCCCTGGCCAGCCTaGGGCTGTCACAGCCACCCGCTGGGGTCAGCCCAGCACACACCA | + |
|
Preference number: 2 (lower is better) Translates to: PVHTGKDQSKLPWPA*GCHSHPLGSAQHTP Trigger: TGGTGTGTGCTGGGCTGACCCCAGCGGGTGGCTGTGACAGCCCAAGGCTGGCCAGGGAAGCTTGGACTGATCTTTGCCAGTATGTACAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR-3UTR TCA 90 bp | CAAGATGGCACCAAAACAAGCGGGTCCTTGTCTGGGCGGCCAGGGGCCTGGCTGATCTCCCTGCTTACTTaGAGACAATGTCTCACCCAG | + |
|
Preference number: 2 (lower is better) Translates to: QDGTKTSGSLSGRPGAWLISLLT*RQCLTQ Trigger: CTGGGTGAGACATTGTCTTCAAGTAAGCAGGGAGAT...CAGCCAGGCCCCTGGCCGCCCAGACAAGGACCCGCTTGTTTTGGTGCCATCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR-3UTR CCA 90 bp | ACAGAGAAATGCTCTGCAGAACAGGAAACCTGGCGACACCAGGCTAAGCTCTGGGCACCTCCCACTTCCTaGGCCCAGGAGCACAGTGGT | + |
|
Preference number: 2 (lower is better) Translates to: TEKCSAEQETWRHQAKLWAPPTS*AQEHSG Trigger: ACCACTGTGCTCCTGGGCCCAGGAAGTGGGAGGTGC...CCAGAGCTTAGCCTGGTGTCGCCAGGTTTCCTGTTCTGCAGAGCATTTCTCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR-3UTR CCA 90 bp | AGTATGACAAGGGTGCGACAGCTAATGGCTCTCAGTGCACCAGGTGCCACACAGCAGTCCAAGCTTCCCTaGCCAGCCTTGGGCTGTCAC | + |
|
Preference number: 2 (lower is better) Translates to: SMTRVRQLMALSAPGATQQSKLP*PALGCH Trigger: GTGACAGCCCAAGGCTGGCCAGGGAAGCTTGGACTG...CTGTGTGGCACCTGGTGCACTGAGAGCCATTAGCTGTCGCACCCTTGTCATACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR-3UTR CCA 90 bp | CAGCCACCCGCTGGGGTCAGCCCAGCACACACCATTTCTTCACTACTTACAGATCCGGCCCTGAAAGGTTaGCTTGCTGTCTCATGGCAG | + |
|
Preference number: 2 (lower is better) Translates to: QPPAGVSPAHTISSLLTDPALKG*LAVSWQ Trigger: CTGCCATGAGACAGCAAGCCAACCTTTCAGGGCCGG...ATCTGTAAGTAGTGAAGAAATGGTGTGTGCTGGGCTGACCCCAGCGGGTGGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR-3UTR CCA 90 bp | GCTCTCAGTGCACCAGGTGCCACACAGATCCATTCCTGTGGCCTGGACAGAGGCACAACGCAAGCATTCTaGGCCCAAAGCATAAGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: ALSAPGATQIHSCGLDRGTTQAF*AQSISV Trigger: CACACTTATGCTTTGGGCCCAGAATGCTTGCGTTGT...GCCTCTGTCCAGGCCACAGGAATGGATCTGTGTGGCACCTGGTGCACTGAGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CAA 90 bp | ATATCAGGGCCACAGGCCCGAGCAGTCACCGATCTCCCTGCTTACTaGAAGACAATGTCTCACCCAGGACACATTAGAAACACCGGAAAC | + |
|
Preference number: 2 (lower is better) Translates to: ISGPQARAVTDLPAY*KTMSHPGHIRNTGN Trigger: GTTTCCGGTGTTTCTAATGTGTCCTGGGTGAGACATTGTCTTCAAGTAAGCAGGGAGATCGGTGACTGCTCGGGCCTGTGGCCCTGATAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR-3UTR GCA 90 bp | CAGCCACCCGCTGGGGTCAGCCCAGCACACACCATTTCTTCACTACTTACAGATAGTCACCGATCTCCCTaGTTACTTGAAGACAATGTC | + |
|
Preference number: 2 (lower is better) Translates to: QPPAGVSPAHTISSLLTDSHRSP*LLEDNV Trigger: GACATTGTCTTCAAGTAAGCAGGGAGATCGGTGACT...ATCTGTAAGTAGTGAAGAAATGGTGTGTGCTGGGCTGACCCCAGCGGGTGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR-3UTR CCA 90 bp | TGGGCACATAAGAAGCAGTTTCCTTTTCTACCCCAAGCTACACAGAGAAATGCTTGTGGGTCTCTTCACTaGCGAGTGACATGCTGGGCC | + |
|
Preference number: 2 (lower is better) Translates to: WAHKKQFPFLPQATQRNACGSLH*RVTCWA Trigger: GGCCCAGCATGTCACTCGCCAGTGAAGAGACCCACA...AGCATTTCTCTGTGTAGCTTGGGGTAGAAAAGGAAACTGCTTCTTATGTGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CCA 72 bp | CTGGTCCCGGCCCTGAAAGGTTGGCTTGCTGTCTCATaGCAGCATGAGCAGTCTCACAGGAAGAGTCCGGGC | + |
|
Preference number: 3 (lower is better) Translates to: LVPALKGWLAVS*QHEQSHRKSPG Trigger: GCCCGGACTCTTCCTGTGAGACTGCTCATGCTGCCATGAGACAGCAAGCCAACCTTTCAGGGCCGGGACCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CCA 72 bp | TTCCCTGGCCAGCCTTGGGCTGTCACAGCCACCCGCTaGGGTCAGCCCAGCACACACCATTTCTTCACTACT | + |
|
Preference number: 3 (lower is better) Translates to: FPGQPWAVTATR*GQPSTHHFFTT Trigger: AGTAGTGAAGAAATGGTGTGTGCTGGGCTGACCCCAGCGGGTGGCTGTGACAGCCCAAGGCTGGCCAGGGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR TCA 72 bp | GGCCCTGAAAGGTTGGCTTGCTGTCTCATGGCAGCATaGGCAGTCTCACAGGAAGAGTCCGGGCTGGAGGGT | + |
|
Preference number: 3 (lower is better) Translates to: GPERLACCLMAA*AVSQEESGLEG Trigger: ACCCTCCAGCCCGGACTCTTCCTGTGAGACTGCTCATGCTGCCATGAGACAGCAAGCCAACCTTTCAGGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CCA 72 bp | TGTGCCCGCTGTATCCTGGTCCCGGCCCTGAAAGGTTaGCTTGCTGTCTCATGGCAGCATGAGCAGTCTCAC | + |
|
Preference number: 3 (lower is better) Translates to: CARCILVPALKG*LAVSWQHEQSH Trigger: GTGAGACTGCTCATGCTGCCATGAGACAGCAAGCCAACCTTTCAGGGCCGGGACCAGGATACAGCGGGCACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR GCA 72 bp | AAGGGTGCGACAGCTAATGGCTCTCAGTGCACCAGGTaGCACACAGATCCATTCCTGTGGCCTGGACAGAGG | + |
|
Preference number: 3 (lower is better) Translates to: KGATANGSQCTR*HTDPFLWPGQR Trigger: CCTCTGTCCAGGCCACAGGAATGGATCTGTGTGGCACCTGGTGCACTGAGAGCCATTAGCTGTCGCACCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CCA 72 bp | GAAGTCTGTGCAGGGCCATCCACAACGCAAGCATTCTaGGCCCAAAGCATAAGTGTGCCCGCTGTATCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: EVCAGPSTTQAF*AQSISVPAVSW Trigger: CCAGGATACAGCGGGCACACTTATGCTTTGGGCCCAGAATGCTTGCGTTGTGGATGGCCCTGCACAGACTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR TCA 72 bp | ACACAGATCCATTCCTGTGGCCTGGACAGAGGCCAGTaGATAGTTATCAGCATGAGTTGGCACCTGTGGGTC | + |
|
Preference number: 3 (lower is better) Translates to: TQIHSCGLDRGQ*IVISMSWHLWV Trigger: GACCCACAGGTGCCAACTCATGCTGATAACTATTCACTGGCCTCTGTCCAGGCCACAGGAATGGATCTGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CCA 72 bp | TCTCAGTGCACCAGGTGCCACACAGATCCATTCCTGTaGCCTGGACAGAGGCCAGTGAATAGTTATCAGCAT | + |
|
Preference number: 3 (lower is better) Translates to: SQCTRCHTDPFL*PGQRPVNSYQH Trigger: ATGCTGATAACTATTCACTGGCCTCTGTCCAGGCCACAGGAATGGATCTGTGTGGCACCTGGTGCACTGAGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CCA 72 bp | AGCTACACAGAGAAATGCTCTGCAGAACAGGAAACCTaGCGACACCAGGCTAAGCTCTGGCTTCTCCCCATA | + |
|
Preference number: 3 (lower is better) Translates to: SYTEKCSAEQET*RHQAKLWLLPI Trigger: TATGGGGAGAAGCCAGAGCTTAGCCTGGTGTCGCCAGGTTTCCTGTTCTGCAGAGCATTTCTCTGTGTAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR-3UTR CAA 90 bp | TGGGCACATAAGAAGCAGTTTCCTTTTCTACCCCAAGCTACACAGAGAAATGCTGATCTCCCTGCTTACTaGAAGACAATGTCTCACCCA | + |
|
Preference number: 3 (lower is better) Translates to: WAHKKQFPFLPQATQRNADLPAY*KTMSHP Trigger: TGGGTGAGACATTGTCTTCAAGTAAGCAGGGAGATC...AGCATTTCTCTGTGTAGCTTGGGGTAGAAAAGGAAACTGCTTCTTATGTGCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR GCA 90 bp | TCCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATCAGGCCGCCGGTCTTCAGGTCATaGCTGCCCTCGATGGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: SHFLGPGAQWFHLQPIRPPVFRS*LPSMEP Trigger: GGGCTCCATCGAGGGCAGGCATGACCTGAAGACCGG...CGGCCTGATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | GGCACCTCCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATCGGGAGTGGATCAGGTTaGACTCTGGGAGCTCGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: GTSHFLGPGAQWFHLQPIGSGSG*TLGARA Trigger: TGCACGAGCTCCCAGAGTTCAACCTGATCCACTCCC...GATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGGAGGTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR GCA 90 bp | GGCACCTCCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATCCAAGCAGCTGGCCCATaGCTGAGCAGCCAAAGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: GTSHFLGPGAQWFHLQPIQAAGP*LSSQRQ Trigger: TTGCCTTTGGCTGCTCAGGCATGGGCCAGCTGCTTG...GATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGGAGGTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | GATCCCAAGATGGCACCAAAACAAGCGGGTCCTTGTCTGGGCGGCCAGGGGCCTACCTTTCCTTACTCCTaGCAGTGGAACTGCCACCCC | + |
|
Preference number: 4 (lower is better) Translates to: DPKMAPKQAGPCLGGQGPTFPYS*QWNCHP Trigger: GGGGTGGCAGTTCCACTGCCAGGAGTAAGGAAAGGT...AGGCCCCTGGCCGCCCAGACAAGGACCCGCTTGTTTTGGTGCCATCTTGGGATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | GATCCCAAGATGGCACCAAAACAAGCGGGTCCTTGTCTGGGCGGCCAGGGGCCTGCACGTACTGGATGTTaGAGCGGTTCCAGTCACAGA | + |
|
Preference number: 4 (lower is better) Translates to: DPKMAPKQAGPCLGGQGPARTGC*SGSSHR Trigger: TCTGTGACTGGAACCGCTTCAACATCCAGTACGTGC...AGGCCCCTGGCCGCCCAGACAAGGACCCGCTTGTTTTGGTGCCATCTTGGGATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | CCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATCAGGCCGTCTTCACCTGCAGCTCTaGGTAGGTGCAGACTGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: PTSWAQEHSGFISSQSGRLHLQL*VGADCP Trigger: AGGACAGTCTGCACCTACTCAGAGCTGCAGGTGAAG...ACGGCCTGATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR GCA 90 bp | CGCTGTATCCTGGTCCCGGCCCTGAAAGGTTGGCTTGCTGTCTCATGGCAGCATCCTCTGAAGTATGTCTaGCTTCCAGCCCCTGGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: RCILVPALKGWLAVSWQHPLKYV*LPAPGC Trigger: GCACCCAGGGGCTGGAAGGCAGACATACTTCAGAGG...ATGCTGCCATGAGACAGCAAGCCAACCTTTCAGGGCCGGGACCAGGATACAGCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | GGCACCTCCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATCGAGGTGACGATGACATaGCCCGTGGTGGTGAATGTC | + |
|
Preference number: 4 (lower is better) Translates to: GTSHFLGPGAQWFHLQPIEVTMT*PVVVNV Trigger: GACATTCACCACCACGGGCCATGTCATCGTCACCTC...GATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGGAGGTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | CATGCTGGGCCTGGTCAACCCCATGAACAGGAAGTATCGGTAAAGCACCACTCAACCTGCACACCAAGCTaGCCAGCAGAGCAGCACCCC | + |
|
Preference number: 4 (lower is better) Translates to: HAGPGQPHEQEVSVKHHSTCTPS*PAEQHP Trigger: GGGGTGCTGCTCTGCTGGTCAGCTTGGTGTGCAGGT...TGAGTGGTGCTTTACCGATACTTCCTGTTCATGGGGTTGACCAGGCCCAGCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | CCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATCAGGCCGTCACAGGGCTCCATCTTaGCTGAGCGAGTATAGATCT | + |
|
Preference number: 4 (lower is better) Translates to: PTSWAQEHSGFISSQSGRHRAPS*LSEYRS Trigger: AGATCTATACTCGCTCAGTCAAGATGGAGCCCTGTG...ACGGCCTGATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR GCA 90 bp | CCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATCAGGCCGTCATCCAGAGACAGGTTaGAGGAGAGCTCAAACCTCT | + |
|
Preference number: 4 (lower is better) Translates to: PTSWAQEHSGFISSQSGRHPETG*RRAQTS Trigger: AGAGGTTTGAGCTCTCCTGCAACCTGTCTCTGGATG...ACGGCCTGATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | GTCCACACTTCTAAACCTTCCCTAGGAAGTCTGTGCAGGGCCATCCACAACGCATCCCACACAAGCAGCTaGCCCATGCCTGAGCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: VHTSKPSLGSLCRAIHNASHTSS*PMPEQP Trigger: TGGCTGCTCAGGCATGGGCCAGCTGCTTGTGTGGGA...TGCGTTGTGGATGGCCCTGCACAGACTTCCTAGGGAAGGTTTAGAAGTGTGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | TGGCACCTCCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATTCTTCCTTCTCCCTCTaGAGTATGTCTGCCTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: WHLPLPGPRSTVVSSPANSSFSL*SMSAFQ Trigger: CTGGAAGGCAGACATACTTCAGAGGGAGAAGGAAGA...ATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGGAGGTGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | AAGTGTGCCCGCTGTATCCTGGTCCCGGCCCTGAAAGGTTGGCTTGCTGTCTCACAGAAGCAAAACCCGTaGCCAAGAGATGGGTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KCARCILVPALKGWLAVSQKQNP*PRDGSS Trigger: AGAAGACCCATCTCTTGGTCACGGGTTTTGCTTCTG...TGAGACAGCAAGCCAACCTTTCAGGGCCGGGACCAGGATACAGCGGGCACACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | ATAGTTATCAGCATGAGTTGGCACCTGTGGGTCTCTTCACTGGCGAGTGACATGCGCTGGAGGCCCTTCTaGAGGAACTGGACCACAGGC | + |
|
Preference number: 4 (lower is better) Translates to: IVISMSWHLWVSSLASDMRWRPF*RNWTTG Trigger: GCCTGTGGTCCAGTTCCTTCAGAAGGGCCTCCAGCG...CATGTCACTCGCCAGTGAAGAGACCCACAGGTGCCAACTCATGCTGATAACTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR GCA 90 bp | CATAACCTGTACATACTGGCAAAGATCAGTCCAAGCTTCCCTGGCCAGCCTTGGGGGGGTGTGTCACACTaGCACACACACAGGGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: HNLYILAKISPSFPGQPWGGVSH*HTHRAP Trigger: TGGAGCCCTGTGTGTGTGGCAGTGTGACACACCCCC...CCAAGGCTGGCCAGGGAAGCTTGGACTGATCTTTGCCAGTATGTACAGGTTATG 56% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR GCA 90 bp | CATAACCTGTACATACTGGCAAAGATCAGTCCAAGCTTCCCTGGCCAGCCTTGGTCCTGGCAGTGGAACTaGCACCCCATTCTCCTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: HNLYILAKISPSFPGQPWSWQWN*HPILLP Trigger: GGGGAGGAGAATGGGGTGGCAGTTCCACTGCCAGGA...CCAAGGCTGGCCAGGGAAGCTTGGACTGATCTTTGCCAGTATGTACAGGTTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR GCA 90 bp | ATAGTTATCAGCATGAGTTGGCACCTGTGGGTCTCTTCACTGGCGAGTGACATGCCACAGGTTCCAGGGTaGGTTTCATGCCCCGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: IVISMSWHLWVSSLASDMPQVPG*VSCPAA Trigger: AGCAGCGGGGCATGAAACGCACCCTGGAACCTGTGG...CATGTCACTCGCCAGTGAAGAGACCCACAGGTGCCAACTCATGCTGATAACTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | TGTACTGCAGATGGGGATCCCAAGATGGCACCAAAACAAGCGGGTCCTTGTCTGCCTTACTCCTGGCAGTaGAACTGCCACCCCATTCTC | + |
|
Preference number: 4 (lower is better) Translates to: CTADGDPKMAPKQAGPCLPYSWQ*NCHPIL Trigger: GAGAATGGGGTGGCAGTTCCACTGCCAGGAGTAAGG...CAGACAAGGACCCGCTTGTTTTGGTGCCATCTTGGGATCCCCATCTGCAGTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | GCTCTCAGTGCACCAGGTGCCACACAGATCCATTCCTGTGGCCTGGACAGAGGCTCCAGTCACAGAGTTTaGAAACATCATCCAGATGCC | + |
|
Preference number: 4 (lower is better) Translates to: ALSAPGATQIHSCGLDRGSSHRV*KHHPDA Trigger: GGCATCTGGATGATGTTTCCAAACTCTGTGACTGGA...GCCTCTGTCCAGGCCACAGGAATGGATCTGTGTGGCACCTGGTGCACTGAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | CATGCTGGGCCTGGTCAACCCCATGAACAGGAAGTATCGGTAAAGCACCACTCAACAGCCCCACGCACTTaGTGTTGTATTTGGTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: HAGPGQPHEQEVSVKHHSTAPRT*CCIWWP Trigger: TGGCCACCAAATACAACATCAAGTGCGTGGGGCTGT...TGAGTGGTGCTTTACCGATACTTCCTGTTCATGGGGTTGACCAGGCCCAGCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | AGTATGACAAGGGTGCGACAGCTAATGGCTCTCAGTGCACCAGGTGCCACACAGCAGGCAGGGACGTGCTaGCTACCTCAATTTCATTCT | + |
|
Preference number: 4 (lower is better) Translates to: SMTRVRQLMALSAPGATQQAGTC*LPQFHS Trigger: AGAATGAAATTGAGGTAGTCAGCACGTCCCTGCCTG...CTGTGTGGCACCTGGTGCACTGAGAGCCATTAGCTGTCGCACCCTTGTCATACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR GCA 90 bp | CATAACCTGTACATACTGGCAAAGATCAGTCCAAGCTTCCCTGGCCAGCCTTGGCCCTCTGATCGGAGATaGTCAGGGAGTGGATCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: HNLYILAKISPSFPGQPWPSDRR*SGSGSG Trigger: ACCTGATCCACTCCCTGAGCATCTCCGATCAGAGGG...CCAAGGCTGGCCAGGGAAGCTTGGACTGATCTTTGCCAGTATGTACAGGTTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | TGTACTGCAGATGGGGATCCCAAGATGGCACCAAAACAAGCGGGTCCTTGTCTGCTCAATTTCATTCTGTaGCACAGCCTCCAGGGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: CTADGDPKMAPKQAGPCLLNFIL*HSLQGL Trigger: GAGGCCCTGGAGGCTGTGCCACAGAATGAAATTGAG...CAGACAAGGACCCGCTTGTTTTGGTGCCATCTTGGGATCCCCATCTGCAGTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| 3UTR CAA 72 bp | CCACAGGCCCGAGCAGTCACCGATCTCCCTGCTTACTaGAAGACAATGTCTCACCCAGGACACATTAGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: PQARAVTDLPAY*KTMSHPGHIRN Trigger: GTTTCTAATGTGTCCTGGGTGAGACATTGTCTTCAAGTAAGCAGGGAGATCGGTGACTGCTCGGGCCTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | CATAACCTGTACATACTGGCAAAGATCAGTCCAAGCTTCCCTGGCCAGCCTTGGGGCCTTGCCCTTGGCTaGATGTTTGGCTGTGATCTT | + |
|
Preference number: 4 (lower is better) Translates to: HNLYILAKISPSFPGQPWGLALG*MFGCDL Trigger: AAGATCACAGCCAAACATTCAGCCAAGGGCAAGGCC...CCAAGGCTGGCCAGGGAAGCTTGGACTGATCTTTGCCAGTATGTACAGGTTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR GCA 90 bp | TGTACTGCAGATGGGGATCCCAAGATGGCACCAAAACAAGCGGGTCCTTGTCTGGCAGCTCTGAGTAGGTaGAGACTGTCCTCATCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: CTADGDPKMAPKQAGPCLAALSR*RLSSSD Trigger: ATCTGATGAGGACAGTCTGCACCTACTCAGAGCTGC...CAGACAAGGACCCGCTTGTTTTGGTGCCATCTTGGGATCCCCATCTGCAGTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | TCCCTAGGAAGTCTGTGCAGGGCCATCCACAACGCAAGCATTCTGGGCCCAAAGGAGTCAAGGTCTCTTTaGTTCTCCAACTGTCGAACA | + |
|
Preference number: 4 (lower is better) Translates to: SLGSLCRAIHNASILGPKESRSL*FSNCRT Trigger: TGTTCGACAGTTGGAGAACCAAAGAGACCTTGACTC...CTTTGGGCCCAGAATGCTTGCGTTGTGGATGGCCCTGCACAGACTTCCTAGGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | TGGGCACATAAGAAGCAGTTTCCTTTTCTACCCCAAGCTACACAGAGAAATGCTCATCCAGGGAGAAGATaGGGAGGCCCTCTGTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: WAHKKQFPFLPQATQRNAHPGRR*GGPLCW Trigger: CCAGCACAGAGGGCCTCCTCATCTTCTCCCTGGATG...AGCATTTCTCTGTGTAGCTTGGGGTAGAAAAGGAAACTGCTTCTTATGTGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR TCA 90 bp | CATAACCTGTACATACTGGCAAAGATCAGTCCAAGCTTCCCTGGCCAGCCTTGGCTCATCAGATGCATCTaGGTCCTCTTCTGTGTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: HNLYILAKISPSFPGQPWLIRCI*VLFCVH Trigger: GTGGACACAGAAGAGGACTCAGATGCATCTGATGAG...CCAAGGCTGGCCAGGGAAGCTTGGACTGATCTTTGCCAGTATGTACAGGTTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | TGTACTGCAGATGGGGATCCCAAGATGGCACCAAAACAAGCGGGTCCTTGTCTGCAACCACAAAGCACTTaGAGTCATCTGTCCAGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: CTADGDPKMAPKQAGPCLQPQST*SHLSSR Trigger: TCGACTGGACAGATGACTCCAAGTGCTTTGTGGTTG...CAGACAAGGACCCGCTTGTTTTGGTGCCATCTTGGGATCCCCATCTGCAGTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | ATAGTTATCAGCATGAGTTGGCACCTGTGGGTCTCTTCACTGGCGAGTGACATGTCAGGAATTCCTCCATaGCATCCAGAGACAGGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: IVISMSWHLWVSSLASDMSGIPP*HPETGC Trigger: GCAACCTGTCTCTGGATGCCATGGAGGAATTCCTGA...CATGTCACTCGCCAGTGAAGAGACCCACAGGTGCCAACTCATGCTGATAACTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CCA 90 bp | CATGCTGGGCCTGGTCAACCCCATGAACAGGAAGTATCGGTAAAGCACCACTCACAGGATAGACTTCATTaGGTTAAAGCAAAGACCACT | + |
|
Preference number: 4 (lower is better) Translates to: HAGPGQPHEQEVSVKHHSQDRLH*VKAKTT Trigger: AGTGGTCTTTGCTTTAACCCAATGAAGTCTATCCTG...TGAGTGGTGCTTTACCGATACTTCCTGTTCATGGGGTTGACCAGGCCCAGCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS CCA 90 bp | CTTTCCCGACCCTCTCCTGCTCCGCTGGTGTGGTCTTCCCTCGGATaGTGGTTTCTCGATCCCCCTCCTCCTCATCCTCCTCCTCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: LSRPSPAPLVWSSLG*WFLDPPPPHPPPLL Trigger: AAGAAGAGGAGGAGGATGAGGAGGAGGGGGATCGAGAAACCACCATCCGAGGGAAGACCACACCAGCGGAGCAGGAGAGGGTCGGGAAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | CTCAGTGCACCAGGTGCCACACAGATCCATTCCTGTGGCCTGGACAGAGGCCAGTTCCACACCTTAACCTaGCCATCGTCCCCACCGGTG | + |
|
Preference number: 5 (lower is better) Translates to: LSAPGATQIHSCGLDRGQFHTLT*PSSPPV Trigger: CACCGGTGGGGACGATGGCAAGGTTAAGGTGTGGAA...CTGGCCTCTGTCCAGGCCACAGGAATGGATCTGTGTGGCACCTGGTGCACTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS CCA 90 bp | TCGAAGGCTCTCACAGTGCCATCCAAGGAGGAGGTGACGATGACATaGCCCGTGGTGGTGAATGTCACTCCAGTGACCCCACTGGAGTGC | + |
|
Preference number: 5 (lower is better) Translates to: SKALTVPSKEEVTMT*PVVVNVTPVTPLEC Trigger: GCACTCCAGTGGGGTCACTGGAGTGACATTCACCACCACGGGCCATGTCATCGTCACCTCCTCCTTGGATGGCACTGTGAGAGCCTTCGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | TGGCACCTCCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATCCAACCACAAAGCACTaGGAGTCATCTGTCCAGTCG | + |
|
Preference number: 5 (lower is better) Translates to: WHLPLPGPRSTVVSSPANPTTKH*ESSVQS Trigger: CGACTGGACAGATGACTCCAAGTGCTTTGTGGTTGG...ATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGGAGGTGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | CAAGATGGCACCAAAACAAGCGGGTCCTTGTCTGGGCGGCCAGGGGCCTGGCTGTTAAAGTCTCCTTCTTaGTTCAAGAAGTACTTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: QDGTKTSGSLSGRPGAWLLKSPS*FKKYLA Trigger: GGCCAAGTACTTCTTGAACAAAGAAGGAGACTTTAA...CAGCCAGGCCCCTGGCCGCCCAGACAAGGACCCGCTTGTTTTGGTGCCATCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | TGGCACCTCCCACTTCCTGGGCCCAGGAGCACAGTGGTTTCATCTCCAGCCAATAGAGTCAAGGTCTCTTaGGTTCTCCAACTGTCGAAC | + |
|
Preference number: 5 (lower is better) Translates to: WHLPLPGPRSTVVSSPANRVKVS*VLQLSN Trigger: GTTCGACAGTTGGAGAACCAAAGAGACCTTGACTCT...ATTGGCTGGAGATGAAACCACTGTGCTCCTGGGCCCAGGAAGTGGGAGGTGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | CATAACCTGTACATACTGGCAAAGATCAGTCCAAGCTTCCCTGGCCAGCCTTGGGTGAAGGCCTTGCCCTaGGCTGAATGTTTGGCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: HNLYILAKISPSFPGQPWVKALP*AECLAV Trigger: CACAGCCAAACATTCAGCCAAGGGCAAGGCCTTCAC...CCAAGGCTGGCCAGGGAAGCTTGGACTGATCTTTGCCAGTATGTACAGGTTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | TGTACTGCAGATGGGGATCCCAAGATGGCACCAAAACAAGCGGGTCCTTGTCTGAGGGTAGTGAAGGCCTaGCCCTTGGCTGAATGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: CTADGDPKMAPKQAGPCLRVVKA*PLAECL Trigger: CAAACATTCAGCCAAGGGCAAGGCCTTCACTACCCT...CAGACAAGGACCCGCTTGTTTTGGTGCCATCTTGGGATCCCCATCTGCAGTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | TCCCTAGGAAGTCTGTGCAGGGCCATCCACAACGCAAGCATTCTGGGCCCAAAGTTGTTCAAGAAGTACTaGGCCAGTCGGGAGTATTTC | + |
|
Preference number: 5 (lower is better) Translates to: SLGSLCRAIHNASILGPKLFKKY*ASREYF Trigger: GAAATACTCCCGACTGGCCAAGTACTTCTTGAACAA...CTTTGGGCCCAGAATGCTTGCGTTGTGGATGGCCCTGCACAGACTTCCTAGGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | GTCCACACTTCTAAACCTTCCCTAGGAAGTCTGTGCAGGGCCATCCACAACGCAACCCTGATTTCAGGTTaGAAGTGTCTGGAGCTCATA | + |
|
Preference number: 5 (lower is better) Translates to: VHTSKPSLGSLCRAIHNATLISG*KCLELI Trigger: TATGAGCTCCAGACACTTCAAACCTGAAATCAGGGT...TGCGTTGTGGATGGCCCTGCACAGACTTCCTAGGGAAGGTTTAGAAGTGTGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | TGGGCACATAAGAAGCAGTTTCCTTTTCTACCCCAAGCTACACAGAGAAATGCTGACAGCCCCACGCACTaGATGTTGTATTTGGTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: WAHKKQFPFLPQATQRNADSPTH*MLYLVA Trigger: GGCCACCAAATACAACATCAAGTGCGTGGGGCTGTC...AGCATTTCTCTGTGTAGCTTGGGGTAGAAAAGGAAACTGCTTCTTATGTGCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS-3UTR CAA 90 bp | AAGCTTCATAAAACTGTATTTGTACTGCAGATGGGGATCCCAAGATGGCACCAACACAGACGCACTGTCTaGTCCCAAGAGGCACTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: KLHKTVFVLQMGIPRWHQHRRTV*SQEALA Trigger: GGCTAGTGCCTCTTGGGACAAGACAGTGCGTCTGTG...TTGGTGCCATCTTGGGATCCCCATCTGCAGTACAAATACAGTTTTATGAAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS GCA 72 bp | CTCCCTCTGAAGTATGTCTGCCTTCCAGCCCCTGGGTaGCTTAAGCCGCAGGCCCTCAGGGGGTGTGTCACA | + |
|
Preference number: 6 (lower is better) Translates to: LPLKYVCLPAPG*LKPQALRGCVT Trigger: TGTGACACACCCCCTGAGGGCCTGCGGCTTAAGGCACCCAGGGGCTGGAAGGCAGACATACTTCAGAGGGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS CCA 72 bp | CCCTCTCCTGCTCCGCTGGTGTGGTCTTCCCTCGGATaGTGGTTTCTCGATCCCCCTCCTCCTCATCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: PSPAPLVWSSLG*WFLDPPPPHPP Trigger: AGGAGGATGAGGAGGAGGGGGATCGAGAAACCACCATCCGAGGGAAGACCACACCAGCGGAGCAGGAGAGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS CCA 72 bp | TCTCCTGCTCCGCTGGTGTGGTCTTCCCTCGGATGGTaGTTTCTCGATCCCCCTCCTCCTCATCCTCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: SPAPLVWSSLGW*FLDPPPPHPPP Trigger: AGGAGGAGGATGAGGAGGAGGGGGATCGAGAAACCACCATCCGAGGGAAGACCACACCAGCGGAGCAGGAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS TCA 72 bp | TCCTCCTCATCCTCCTCCTCTTCTTCCTTCTCCCTCTaGAGTATGTCTGCCTTCCAGCCCCTGGGTGCCTTA | + |
|
Preference number: 6 (lower is better) Translates to: SSSSSSSSSFSL*SMSAFQPLGAL Trigger: TAAGGCACCCAGGGGCTGGAAGGCAGACATACTTCAGAGGGAGAAGGAAGAAGAGGAGGAGGATGAGGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS TCA 72 bp | TCCCCAGAGCTGTTGATGGCAACCGAAGCAACCCTCTaGTCGGAGATGCTCAGGGAGTGGATCAGGTTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: SPELLMATEATL*SEMLREWIRLN Trigger: GTTCAACCTGATCCACTCCCTGAGCATCTCCGATCAGAGGGTTGCTTCGGTTGCCATCAACAGCTCTGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS TCA 72 bp | CGGGGGCGTGGTACATTTGCGCAATGTTGCCCTTTGTaGCAACGAATTTTCTGCCATCGGGAGAGAAGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: RGRGTFAQCCPL*QRIFCHRERRR Trigger: TCTCCTTCTCTCCCGATGGCAGAAAATTCGTTGTCACAAAGGGCAACATTGCGCAAATGTACCACGCCCCCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||
| CDS CCA 72 bp | CTTGTCCCAAGAGGCACTAGCCAGGATAGACTTCATTaGGTTAAAGCAAAGACCACTGACGGGTCCCTCATG | + |
|
Preference number: 6 (lower is better) Translates to: LVPRGTSQDRLH*VKAKTTDGSLM Trigger: CATGAGGGACCCGTCAGTGGTCTTTGCTTTAACCCAATGAAGTCTATCCTGGCTAGTGCCTCTTGGGACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042556.11 |
||