Pregenerated sensors for PVRIG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000109713Ensembl transcript IDs: ENSMUST00000211088.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAATCATCTGGGTGTTTGGAAATGTGTGCAAAAACAGGATGTAACTaGACCTTTGTCGTACTCTTCGGCTCACACTTGTGTCCATTTATG | + |
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Preference number: 1 (lower is better) Translates to: KSSGCLEMCAKTGCN*TFVVLFGSHLCPFM Trigger: CATAAATGGACACAAGTGTGAGCCGAAGAGTACGACAAAGGTTCAGTTACATCCTGTTTTTGCACACATTTCCAAACACCCAGATGATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| 3UTR-3UTR GCA 90 bp | AGAAGGACCACTTTATGGACATTGGTAAAGAAATCATCTGGGTGTTTGGAAATGTTTTCCAGGGTACTGTaGTCCAGACAGTCGGTGGAA | + |
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Preference number: 2 (lower is better) Translates to: RRTTLWTLVKKSSGCLEMFSRVL*SRQSVE Trigger: TTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAA...CATTTCCAAACACCCAGATGATTTCTTTACCAATGTCCATAAAGTGGTCCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| 3UTR-3UTR GCA 90 bp | AGAAGGACCACTTTATGGACATTGGTAAAGAAATCATCTGGGTGTTTGGAAATGACTTGTGTCCATTTATaGACACTCAATAACCACATC | + |
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Preference number: 2 (lower is better) Translates to: RRTTLWTLVKKSSGCLEMTCVHL*TLNNHI Trigger: GATGTGGTTATTGAGTGTGCATAAATGGACACAAGT...CATTTCCAAACACCCAGATGATTTCTTTACCAATGTCCATAAAGTGGTCCTTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| 3UTR GCA 72 bp | TTGTCGTACTCTTCGGCTCACACTTGTGTCCATTTATaGACACTCAATAACCACATCCTGGCTAGCAGGGTT | + |
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Preference number: 3 (lower is better) Translates to: LSYSSAHTCVHL*TLNNHILASRV Trigger: AACCCTGCTAGCCAGGATGTGGTTATTGAGTGTGCATAAATGGACACAAGTGTGAGCCGAAGAGTACGACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| 3UTR CCA 72 bp | CTTGTGTCCATTTATGCACACTCAATAACCACATCCTaGCTAGCAGGGTTTGATGACACTGATCAGAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: LVSIYAHSITTS*LAGFDDTDQKL Trigger: AAGCTTCTGATCAGTGTCATCAAACCCTGCTAGCCAGGATGTGGTTATTGAGTGTGCATAAATGGACACAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| 3UTR TCA 72 bp | ACACTGATCAGAAGCTTAAGAATAGAGCAAGATTCATaGAGAAGCCTGGTGCCCAGGTTGAAGACATCAGTA | + |
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Preference number: 3 (lower is better) Translates to: TLIRSLRIEQDS*RSLVPRLKTSV Trigger: TACTGATGTCTTCAACCTGGGCACCAGGCTTCTTCATGAATCTTGCTCTATTCTTAAGCTTCTGATCAGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR GCA 90 bp | CTTCTAAGCATTTTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGAGTTTCCCAGTGGGCCTaGCTGGCAGGAGCCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: LLSIFPGYCAPDSRWKLGVSQWA*LAGAHC Trigger: GCAGTGGGCTCCTGCCAGGCAGGCCCACTGGGAAAC...TCCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAAATGCTTAGAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR GCA 90 bp | AGCATTTTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGAAGAGTGGCCTCCATCTGGACTTaGACCCACACCTCAGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: SIFPGYCAPDSRWKLGRVASIWT*THTSGL Trigger: AAGCCCTGAGGTGTGGGTGCAAGTCCAGATGGAGGC...CACTCTTCCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAAATGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CCA 90 bp | AAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGTCGTACTCTTCGGCTCACCCCAGTGGGCCTGCCTaGCAGGAGCCCACTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: KCVQKQDVTEPLSYSSAHPSGPA*QEPTAG Trigger: CCCAGCAGTGGGCTCCTGCCAGGCAGGCCCACTGGG...GTGAGCCGAAGAGTACGACAAAGGTTCAGTTACATCCTGTTTTTGCACACATTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CCA 90 bp | GCCTGTAGTGGACCAAGGGTACCTGTCATTGAACTTCTAAGCATTTTTCCAGGGTTTGGGGTTTCCCAGTaGGCCTGCCTGGCAGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: ACSGPRVPVIELLSIFPGFGVSQ*ACLAGA Trigger: GGCTCCTGCCAGGCAGGCCCACTGGGAAACCCCAAA...CCCTGGAAAAATGCTTAGAAGTTCAATGACAGGTACCCTTGGTCCACTACAGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR TCA 90 bp | ACTTCTAAGCATTTTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGGGTCTGCTTGAAGATTaGGGGCTGGAGTTGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: TSKHFSRVLCSRQSVEVGGLLED*GLELGQ Trigger: CTGCCCCAACTCCAGCCCTCAATCTTCAAGCAGACC...CCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAAATGCTTAGAAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR GCA 90 bp | GCATTTTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGAAGAGTGTCCACACCTCAGGGCTTaGTTCAGAGACACAGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: AFFQGTVLQTVGGSWEECPHLRA*FRDTEG Trigger: ACCCTCTGTGTCTCTGAAGCAAGCCCTGAGGTGTGG...ACACTCTTCCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAAATGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR TCA 90 bp | GCATTTTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGAAGAGTGTCTGTTACCAGGGAGATaGGGCTATATCCTAAGACCC | + |
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Preference number: 4 (lower is better) Translates to: AFFQGTVLQTVGGSWEECLLPGR*GYILRP Trigger: GGGTCTTAGGATATAGCCTCATCTCCCTGGTAACAG...ACACTCTTCCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAAATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CCA 90 bp | ACTTCTAAGCATTTTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGGCAGGAGCCCACTGCTaGGTACCAAATTCTGGATGT | + |
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Preference number: 4 (lower is better) Translates to: TSKHFSRVLCSRQSVEVGAGAHC*VPNSGC Trigger: ACATCCAGAATTTGGTACCCAGCAGTGGGCTCCTGC...CCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAAATGCTTAGAAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR TCA 90 bp | AAGCTTAAGAATAGAGCAAGATTCATGAAGAAGCCTGGTGCCCAGGTTGAAGACGTCCCATGGTCAGAGTaGCAGAGACGCTGTTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: KLKNRARFMKKPGAQVEDVPWSE*QRRCLG Trigger: CCCCAAACAGCGTCTCTGTCACTCTGACCATGGGAC...GTCTTCAACCTGGGCACCAGGCTTCTTCATGAATCTTGCTCTATTCTTAAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR TCA 90 bp | AATCATCTGGGTGTTTGGAAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGGCCAAGTGGGGAGGCTaGGTCTCCACCTGTGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: NHLGVWKCVQKQDVTEPLAKWGG*VSTCAW Trigger: CCAGGCACAGGTGGAGACTCAGCCTCCCCACTTGGC...CAAAGGTTCAGTTACATCCTGTTTTTGCACACATTTCCAAACACCCAGATGATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CCA 90 bp | CTTCTAAGCATTTTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGACCCATATTTGTTGCATaGGCAGCCTGTGTGTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: LLSIFPGYCAPDSRWKLGPIFVA*AACVLP Trigger: AGGCAACACACAGGCTGCCCATGCAACAAATATGGG...TCCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAAATGCTTAGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR GCA 90 bp | GCCTGTAGTGGACCAAGGGTACCTGTCATTGAACTTCTAAGCATTTTTCCAGGGCACCAATGCCTCTGCTaGCACCGGAGACATAGTATA | + |
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Preference number: 4 (lower is better) Translates to: ACSGPRVPVIELLSIFPGHQCLC*HRRHSI Trigger: TATACTATGTCTCCGGTGGCAGCAGAGGCATTGGTG...CCCTGGAAAAATGCTTAGAAGTTCAATGACAGGTACCCTTGGTCCACTACAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CCA 90 bp | AAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGTCGTACTCTTCGGCTCACATTGAGGGCTGGAGTTaGGGCAGAGAGTCCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: KCVQKQDVTEPLSYSSAHIEGWS*GRESWI Trigger: GATCCAGGACTCTCTGCCCCAACTCCAGCCCTCAAT...GTGAGCCGAAGAGTACGACAAAGGTTCAGTTACATCCTGTTTTTGCACACATTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CCA 90 bp | GCATTTTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGAAGAGTGTGGTGCTAGTGAGAGATaGCTGAGATTTACTCAAACA | + |
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Preference number: 4 (lower is better) Translates to: AFFQGTVLQTVGGSWEECGASER*LRFTQT Trigger: TGTTTGAGTAAATCTCAGCCATCTCTCACTAGCACC...ACACTCTTCCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAAATGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR TCA 90 bp | AAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGTCGTACTCTTCGGCTCACGACCCCACAGTGAACTaGGAAAGACGAGAGGTTGGT | + |
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Preference number: 4 (lower is better) Translates to: KCVQKQDVTEPLSYSSAHDPTVN*ERREVG Trigger: ACCAACCTCTCGTCTTTCTCAGTTCACTGTGGGGTC...GTGAGCCGAAGAGTACGACAAAGGTTCAGTTACATCCTGTTTTTGCACACATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CCA 90 bp | AAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGTCGTACTCTTCGGCTCACTTGAAGATTGAGGGCTaGAGTTGGGGCAGAGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: KCVQKQDVTEPLSYSSAHLKIEG*SWGRES Trigger: GGACTCTCTGCCCCAACTCCAGCCCTCAATCTTCAA...GTGAGCCGAAGAGTACGACAAAGGTTCAGTTACATCCTGTTTTTGCACACATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR TCA 90 bp | AAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGTCGTACTCTTCGGCTCACGCAACCCTGGAACCATaGGGAAAGGTAACAAACTCG | + |
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Preference number: 4 (lower is better) Translates to: KCVQKQDVTEPLSYSSAHATLEP*GKVTNS Trigger: CGAGTTTGTTACCTTTCCTCATGGTTCCAGGGTTGC...GTGAGCCGAAGAGTACGACAAAGGTTCAGTTACATCCTGTTTTTGCACACATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR TCA 90 bp | GGGTTTGATGACACTGATCAGAAGCTTAAGAATAGAGCAAGATTCATGAAGAAGCTCACCAGGTCTGCTTaGAGATTGAGGGCTGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: GFDDTDQKLKNRARFMKKLTRSA*RLRAGV Trigger: AACTCCAGCCCTCAATCTTCAAGCAGACCTGGTGAG...CTTCTTCATGAATCTTGCTCTATTCTTAAGCTTCTGATCAGTGTCATCAAACCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR GCA 90 bp | AATCATCTGGGTGTTTGGAAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGTTACTCAAACACCAATaGCTCTGCTGCCACCGGAGA | + |
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Preference number: 4 (lower is better) Translates to: NHLGVWKCVQKQDVTEPLLLKHQ*LCCHRR Trigger: TCTCCGGTGGCAGCAGAGGCATTGGTGTTTGAGTAA...CAAAGGTTCAGTTACATCCTGTTTTTGCACACATTTCCAAACACCCAGATGATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CCA 90 bp | GTTTGGAAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGTCGTACTCTTCGGAGAGCTTCTTGCTTTaGATTGTCCCATGGTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: VWKCVQKQDVTEPLSYSSESFLL*IVPWSE Trigger: CTCTGACCATGGGACAATCCAAAGCAAGAAGCTCTC...CGAAGAGTACGACAAAGGTTCAGTTACATCCTGTTTTTGCACACATTTCCAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR TCA 90 bp | GGGTTTGATGACACTGATCAGAAGCTTAAGAATAGAGCAAGATTCATGAAGAAGAGAGAGTCCTGGATCTaGTCTATGCAGGTCTCTACA | + |
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Preference number: 4 (lower is better) Translates to: GFDDTDQKLKNRARFMKKRESWI*SMQVST Trigger: TGTAGAGACCTGCATAGATCAGATCCAGGACTCTCT...CTTCTTCATGAATCTTGCTCTATTCTTAAGCTTCTGATCAGTGTCATCAAACCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CCA 90 bp | GTTTGGAAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGTCGTACTCTTCGAGCAGAATGTGGTGTTaGCTAGAGAGCTTCTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: VWKCVQKQDVTEPLSYSSSRMWC*LESFLL Trigger: AAGCAAGAAGCTCTCTAGCCAACACCACATTCTGCT...CGAAGAGTACGACAAAGGTTCAGTTACATCCTGTTTTTGCACACATTTCCAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| 3UTR CAA 72 bp | TGGAAATGTGTGCAAAAACAGGATGTAACTGAACCTTaGTCGTACTCTTCGGCTCACACTTGTGTCCATTTA | + |
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Preference number: 4 (lower is better) Translates to: WKCVQKQDVTEP*SYSSAHTCVHL Trigger: TAAATGGACACAAGTGTGAGCCGAAGAGTACGACAAAGGTTCAGTTACATCCTGTTTTTGCACACATTTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR TCA 90 bp | AATCATCTGGGTGTTTGGAAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGCTAGTGAGAGATGGCTaGGATTTACTCAAACACCAA | + |
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Preference number: 4 (lower is better) Translates to: NHLGVWKCVQKQDVTEPLLVRDG*DLLKHQ Trigger: TTGGTGTTTGAGTAAATCTCAGCCATCTCTCACTAG...CAAAGGTTCAGTTACATCCTGTTTTTGCACACATTTCCAAACACCCAGATGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS GCA 90 bp | GCTGCTGTGTGTAGAGGCCAAGTGGGGAGGCTGAGTCTCCACCTGTaGCTGGGTGCTAGTGAGAGATGGCTGAGATTTACTCAAACACCA | + |
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Preference number: 5 (lower is better) Translates to: AAVCRGQVGRLSLHL*LGASERWLRFTQTP Trigger: TGGTGTTTGAGTAAATCTCAGCCATCTCTCACTAGCACCCAGGCACAGGTGGAGACTCAGCCTCCCCACTTGGCCTCTACACACAGCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CAA 90 bp | GCCTGTAGTGGACCAAGGGTACCTGTCATTGAACTTCTAAGCATTTTTCCAGGGGGCCTCCATCTGGACTaGCACCCACACCTCAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: ACSGPRVPVIELLSIFPGGLHLD*HPHLRA Trigger: AGCCCTGAGGTGTGGGTGCAAGTCCAGATGGAGGCC...CCCTGGAAAAATGCTTAGAAGTTCAATGACAGGTACCCTTGGTCCACTACAGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS CCA 90 bp | TATATCCTAAGACCCCACAGTGAACTGAGAAAGACGAGAGGTTGGTaGCCTCCATCTGGACTTGCACCCACACCTCAGGGCTTGCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: YILRPHSELRKTRGW*PPSGLAPTPQGLLQ Trigger: CTGAAGCAAGCCCTGAGGTGTGGGTGCAAGTCCAGATGGAGGCCACCAACCTCTCGTCTTTCTCAGTTCACTGTGGGGTCTTAGGATATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CAA 90 bp | GCATTTTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGAAGAGTGTGCATCTGGCCCATATTaGTTGCATGGGCAGCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: AFFQGTVLQTVGGSWEECASGPY*LHGQPV Trigger: CACAGGCTGCCCATGCAACAAATATGGGCCAGATGC...ACACTCTTCCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAAAATGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CAA 90 bp | TTTCCAGGGTACTGTGCTCCAGACAGTCGGTGGAAGTTGGGAAGAGTGTGGGGAGCTTCTTGCTTTGGATaGTCCCATGGTCAGAGTGAC | + |
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Preference number: 5 (lower is better) Translates to: FPGYCAPDSRWKLGRVWGASCFG*SHGQSD Trigger: GTCACTCTGACCATGGGACAATCCAAAGCAAGAAGC...TCCCCACACTCTTCCCAACTTCCACCGACTGTCTGGAGCACAGTACCCTGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS TCA 90 bp | TGCTTGAAGATTGAGGGCTGGAGTTGGGGCAGAGAGTCCTGGATCTaGTCTATGCAGGTCTCTACAGGCAACCCTGGAACCATGAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: CLKIEGWSWGRESWI*SMQVSTGNPGTMRK Trigger: TTTCCTCATGGTTCCAGGGTTGCCTGTAGAGACCTGCATAGATCAGATCCAGGACTCTCTGCCCCAACTCCAGCCCTCAATCTTCAAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS GCA 90 bp | TCAGAGACACAGAGGGTCAGCAATGTTGAGAATAGAACCAGGGTCTaGATCTGGCCCATATTTGTTGCATGGGCAGCCTGTGTGTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: SETQRVSNVENRTRV*IWPIFVAWAACVLP Trigger: AGGCAACACACAGGCTGCCCATGCAACAAATATGGGCCAGATGCAGACCCTGGTTCTATTCTCAACATTGCTGACCCTCTGTGTCTCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS CCA 90 bp | ACACAGAGGGTCAGCAATGTTGAGAATAGAACCAGGGTCTGCATCTaGCCCATATTTGTTGCATGGGCAGCCTGTGTGTTGCCTGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: TQRVSNVENRTRVCI*PIFVAWAACVLPVL Trigger: GAGAACAGGCAACACACAGGCTGCCCATGCAACAAATATGGGCCAGATGCAGACCCTGGTTCTATTCTCAACATTGCTGACCCTCTGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS TCA 90 bp | TTCCAGCGTCAACAAATCCTTCACAGCTCACTGTTACCAGGGAGATaGGGCTATATCCTAAGACCCCACAGTGAACTGAGAAAGACGAGA | + |
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Preference number: 5 (lower is better) Translates to: FQRQQILHSSLLPGR*GYILRPHSELRKTR Trigger: TCTCGTCTTTCTCAGTTCACTGTGGGGTCTTAGGATATAGCCTCATCTCCCTGGTAACAGTGAGCTGTGAAGGATTTGTTGACGCTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS-3UTR CAA 90 bp | AATCATCTGGGTGTTTGGAAATGTGTGCAAAAACAGGATGTAACTGAACCTTTGCCCACACCTCAGGGCTaGCTTCAGAGACACAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: NHLGVWKCVQKQDVTEPLPTPQG*LQRHRG Trigger: CCCTCTGTGTCTCTGAAGCAAGCCCTGAGGTGTGGG...CAAAGGTTCAGTTACATCCTGTTTTTGCACACATTTCCAAACACCCAGATGATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS CCA 72 bp | AGACCCCACAGTGAACTGAGAAAGACGAGAGGTTGGTaGCCTCCATCTGGACTTGCACCCACACCTCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: RPHSELRKTRGW*PPSGLAPTPQG Trigger: GCCCTGAGGTGTGGGTGCAAGTCCAGATGGAGGCCACCAACCTCTCGTCTTTCTCAGTTCACTGTGGGGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS TCA 72 bp | ATGAAGCTGCTGTGTGTAGAGGCCAAGTGGGGAGGCTaGGTCTCCACCTGTGCCTGGGTGCTAGTGAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: MKLLCVEAKWGG*VSTCAWVLVRD Trigger: ATCTCTCACTAGCACCCAGGCACAGGTGGAGACTCAGCCTCCCCACTTGGCCTCTACACACAGCAGCTTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS TCA 72 bp | ATTGAGGGCTGGAGTTGGGGCAGAGAGTCCTGGATCTaGTCTATGCAGGTCTCTACAGGCAACCCTGGAACC | + |
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Preference number: 6 (lower is better) Translates to: IEGWSWGRESWI*SMQVSTGNPGT Trigger: GGTTCCAGGGTTGCCTGTAGAGACCTGCATAGATCAGATCCAGGACTCTCTGCCCCAACTCCAGCCCTCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS TCA 72 bp | ACTCCTGAGGTTCCCAAGATCCTCACCAGGTCTGCTTaGAGATTGAGGGCTGGAGTTGGGGCAGAGAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: TPEVPKILTRSA*RLRAGVGAESP Trigger: AGGACTCTCTGCCCCAACTCCAGCCCTCAATCTTCAAGCAGACCTGGTGAGGATCTTGGGAACCTCAGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS GCA 72 bp | TGTAGAGGCCAAGTGGGGAGGCTGAGTCTCCACCTGTaGCTGGGTGCTAGTGAGAGATGGCTGAGATTTACT | + |
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Preference number: 6 (lower is better) Translates to: CRGQVGRLSLHL*LGASERWLRFT Trigger: AGTAAATCTCAGCCATCTCTCACTAGCACCCAGGCACAGGTGGAGACTCAGCCTCCCCACTTGGCCTCTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS CCA 72 bp | GTTTCCCAGTGGGCCTGCCTGGCAGGAGCCCACTGCTaGGTACCAAATTCTGGATGTAACACAGCTAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: VSQWACLAGAHC*VPNSGCNTASL Trigger: CAAACTAGCTGTGTTACATCCAGAATTTGGTACCCAGCAGTGGGCTCCTGCCAGGCAGGCCCACTGGGAAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS TCA 72 bp | GAGAGCTTCTTGCTTTGGATTGTCCCATGGTCAGAGTaGCAGAGACGCTGTTTGGGGTTTCCCAGTGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: ESFLLWIVPWSE*QRRCLGFPSGP Trigger: AGGCCCACTGGGAAACCCCAAACAGCGTCTCTGTCACTCTGACCATGGGACAATCCAAAGCAAGAAGCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS CAA 90 bp | CCCACACCTCAGGGCTTGCTTCAGAGACACAGAGGGTCAGCAATGTaGAGAATAGAACCAGGGTCTGCATCTGGCCCATATTTGTTGCAT | + |
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Preference number: 6 (lower is better) Translates to: PTPQGLLQRHRGSAM*RIEPGSASGPYLLH Trigger: ATGCAACAAATATGGGCCAGATGCAGACCCTGGTTCTATTCTCAACATTGCTGACCCTCTGTGTCTCTGAAGCAAGCCCTGAGGTGTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS GCA 72 bp | CAGAGGGTCAGCAATGTTGAGAATAGAACCAGGGTCTaGATCTGGCCCATATTTGTTGCATGGGCAGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: QRVSNVENRTRV*IWPIFVAWAAC Trigger: ACAGGCTGCCCATGCAACAAATATGGGCCAGATGCAGACCCTGGTTCTATTCTCAACATTGCTGACCCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS CAA 72 bp | CAGCAGAATGTGGTGTTGGCTAGAGAGCTTCTTGCTTaGGATTGTCCCATGGTCAGAGTGACAGAGACGCTG | + |
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Preference number: 6 (lower is better) Translates to: QQNVVLARELLA*DCPMVRVTETL Trigger: CAGCGTCTCTGTCACTCTGACCATGGGACAATCCAAAGCAAGAAGCTCTCTAGCCAACACCACATTCTGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS TCA 72 bp | GATCTATGCAGGTCTCTACAGGCAACCCTGGAACCATaGGGAAAGGTAACAAACTCGCAGCAGAATGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: DLCRSLQATLEP*GKVTNSQQNVV Trigger: CACCACATTCTGCTGCGAGTTTGTTACCTTTCCTCATGGTTCCAGGGTTGCCTGTAGAGACCTGCATAGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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| CDS TCA 72 bp | CAACAAATCCTTCACAGCTCACTGTTACCAGGGAGATaGGGCTATATCCTAAGACCCCACAGTGAACTGAGA | + |
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Preference number: 6 (lower is better) Translates to: QQILHSSLLPGR*GYILRPHSELR Trigger: TCTCAGTTCACTGTGGGGTCTTAGGATATAGCCTCATCTCCCTGGTAACAGTGAGCTGTGAAGGATTTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211088.2 |
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