Pregenerated sensors for PVR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040511Ensembl transcript IDs: ENSMUST00000043517.8
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GACCAGGCTTTCTGTGCACAGCCCACCATCCCACAGCAGAGGACCTaGACTGGGTTCTTAGCACCTATGTGGGGCTACTCACAAGTGCAT | + |
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Preference number: 1 (lower is better) Translates to: DQAFCAQPTIPQQRT*TGFLAPMWGYSQVH Trigger: ATGCACTTGTGAGTAGCCCCACATAGGTGCTAAGAACCCAGTTCAGGTCCTCTGCTGTGGGATGGTGGGCTGTGCACAGAAAGCCTGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CCA 90 bp | CTGAGAAAAACAAAGTCACATTGTTTACAGGAAACTGGATACAACTaGAGAGAATGGTATCAGAGAACTCAGGTCAGCCTCAGAAAGACA | + |
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Preference number: 1 (lower is better) Translates to: LRKTKSHCLQETGYN*REWYQRTQVSLRKT Trigger: TGTCTTTCTGAGGCTGACCTGAGTTCTCTGATACCATTCTCTCCAGTTGTATCCAGTTTCCTGTAAACAATGTGACTTTGTTTTTCTCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CCA 90 bp | GTTTTAGCTACTGAGAAAAACAAAGTCACATTGTTTACAGGAAACTaGATACAACTGGAGAGAATGGTATCAGAGAACTCAGGTCAGCCT | + |
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Preference number: 1 (lower is better) Translates to: VLATEKNKVTLFTGN*IQLERMVSENSGQP Trigger: AGGCTGACCTGAGTTCTCTGATACCATTCTCTCCAGTTGTATCCAGTTTCCTGTAAACAATGTGACTTTGTTTTTCTCAGTAGCTAAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR TCA 90 bp | AGGAGGCGAGGTCCAACTCCTTCCATCCCATGCTGGTGTAAATCACAGCCCACCCTGAGATGTCAAGAGTaGGCCAACACACTGGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: RRRGPTPSIPCWCKSQPTLRCQE*ANTLAS Trigger: GGAGGCCAGTGTGTTGGCTCACTCTTGACATCTCAG...GGTGGGCTGTGATTTACACCAGCATGGGATGGAAGGAGTTGGACCTCGCCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CAA 90 bp | TGGGGAGGTAGAAGCAGACATATCTCTGTGAGTTTGAGCCTAGCCTaGGCTACATACAGAGACCTTGTCCAGAGAGGAGGGGATAGCCCC | + |
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Preference number: 2 (lower is better) Translates to: WGGRSRHISVSLSLA*ATYRDLVQRGGDSP Trigger: GGGGCTATCCCCTCCTCTCTGGACAAGGTCTCTGTATGTAGCCAAGGCTAGGCTCAAACTCACAGAGATATGTCTGCTTCTACCTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGAGGACCTGAACTGGGTTCTTAGCACCTATGTGGGGCTACTCACAAGTGCAGAAGACCTAGAAAAGTaGAGTGGCACAAATACTTTC | + |
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Preference number: 2 (lower is better) Translates to: AEDLNWVLSTYVGLLTSAEDLEK*SGTNTF Trigger: GAAAGTATTTGTGCCACTGCACTTTTCTAGGTCTTC...TGCACTTGTGAGTAGCCCCACATAGGTGCTAAGAACCCAGTTCAGGTCCTCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CAA 90 bp | TTAGGGTTTGACAGCAGGTACTTTTCATTGGCTTGGACTGAGAGTTaGGGGAAACCTTATTTGCATGTGGGAGGGCTTAGTGCAGCTACT | + |
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Preference number: 2 (lower is better) Translates to: LGFDSRYFSLAWTES*GKPYLHVGGLSAAT Trigger: AGTAGCTGCACTAAGCCCTCCCACATGCAAATAAGGTTTCCCCAAACTCTCAGTCCAAGCCAATGAAAAGTACCTGCTGTCAAACCCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR TCA 90 bp | TTTTGTGCCTTCTTCTGGCCTCTACAAACATGTACAGGCATTCCTGGGAGTTTATGGCCCACAGAGGAATaGGTAAAGAAAGTGTACACT | + |
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Preference number: 2 (lower is better) Translates to: FCAFFWPLQTCTGIPGSLWPTEE*VKKVYT Trigger: AGTGTACACTTTCTTTACTCATTCCTCTGTGGGCCA...TAAACTCCCAGGAATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGCACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR GCA 90 bp | ATGTGGGGCTACTCACAAGTGCATGTAAGCCTGGCTCAAGATTTTGTGCCTTCTAGTCTAGCACATACATaGGGTAGAGGATTTACCTTA | + |
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Preference number: 2 (lower is better) Translates to: MWGYSQVHVSLAQDFVPSSLAHT*GRGFTL Trigger: TAAGGTAAATCCTCTACCGCATGTATGTGCTAGACT...AGAAGGCACAAAATCTTGAGCCAGGCTTACATGCACTTGTGAGTAGCCCCACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR CCA 90 bp | GCCTTCTTCTGGCCTCTACAAACATGTACAGGCATTCCTGGGAGTTTACTAAACTACAACTGGAGAGAATaGTATCAGAGAACTCAGGTC | + |
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Preference number: 2 (lower is better) Translates to: AFFWPLQTCTGIPGSLLNYNWRE*YQRTQV Trigger: GACCTGAGTTCTCTGATACCATTCTCTCCAGTTGTA...GTTTAGTAAACTCCCAGGAATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR TCA 90 bp | GGAATGAGTAAAGAAAGTGTACACTCACATAATTGGGATGTTTTAGCTACTGAGCTATGCTCATCACACTaGGCAGCCAGTCTCTCTGGA | + |
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Preference number: 2 (lower is better) Translates to: GMSKESVHSHNWDVLATELCSSH*AASLSG Trigger: TCCAGAGAGACTGGCTGCTCAGTGTGATGAGCATAG...CTCAGTAGCTAAAACATCCCAATTATGTGAGTGTACACTTTCTTTACTCATTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR CCA 90 bp | TTGGCTTGGACTGAGAGTTTGGGGAAACCTTATTTGCATGTGGGAGGGCTTAGTGTTTACCATCACTCTTaGCTACATAGTAAGTTTGAG | + |
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Preference number: 2 (lower is better) Translates to: LAWTESLGKPYLHVGGLSVYHHS*LHSKFE Trigger: CTCAAACTTACTATGTAGCCAAGAGTGATGGTAAAC...ACTAAGCCCTCCCACATGCAAATAAGGTTTCCCCAAACTCTCAGTCCAAGCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR GCA 72 bp | TTCCAGACCTTTGCTAGACCGGGACCAGGCTTTCTGTaGACAGCCCACCATCCCACAGCAGAGGACCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: FQTFARPGPGFL*TAHHPTAEDLN Trigger: GTTCAGGTCCTCTGCTGTGGGATGGTGGGCTGTGCACAGAAAGCCTGGTCCCGGTCTAGCAAAGGTCTGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR TCA 72 bp | TTCTGTGCACAGCCCACCATCCCACAGCAGAGGACCTaGACTGGGTTCTTAGCACCTATGTGGGGCTACTCA | + |
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Preference number: 3 (lower is better) Translates to: FCAQPTIPQQRT*TGFLAPMWGYS Trigger: TGAGTAGCCCCACATAGGTGCTAAGAACCCAGTTCAGGTCCTCTGCTGTGGGATGGTGGGCTGTGCACAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CCA 72 bp | TGCACAGCCCACCATCCCACAGCAGAGGACCTGAACTaGGTTCTTAGCACCTATGTGGGGCTACTCACAAGT | + |
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Preference number: 3 (lower is better) Translates to: CTAHHPTAEDLN*VLSTYVGLLTS Trigger: ACTTGTGAGTAGCCCCACATAGGTGCTAAGAACCCAGTTCAGGTCCTCTGCTGTGGGATGGTGGGCTGTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR CAA 90 bp | TTGGCTACATACAGAGACCTTGTCCAGAGAGGAGGGGATAGCCCCAATGGAGTCAGCCCCTTAGCTTGTTaGTGTATGGACAGGGCTTTG | + |
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Preference number: 3 (lower is better) Translates to: LATYRDLVQRGGDSPNGVSPLAC*CMDRAL Trigger: CAAAGCCCTGTCCATACACAAACAAGCTAAGGGGCT...GACTCCATTGGGGCTATCCCCTCCTCTCTGGACAAGGTCTCTGTATGTAGCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CCA 72 bp | GCATGTAAGCCTGGCTCAAGATTTTGTGCCTTCTTCTaGCCTCTACAAACATGTACAGGCATTCCTGGGAGT | + |
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Preference number: 3 (lower is better) Translates to: ACKPGSRFCAFF*PLQTCTGIPGS Trigger: ACTCCCAGGAATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGCACAAAATCTTGAGCCAGGCTTACATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CCA 72 bp | ACAGCAGGTACTTTTCATTGGCTTGGACTGAGAGTTTaGGGAAACCTTATTTGCATGTGGGAGGGCTTAGTG | + |
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Preference number: 3 (lower is better) Translates to: TAGTFHWLGLRV*GNLICMWEGLV Trigger: CACTAAGCCCTCCCACATGCAAATAAGGTTTCCCCAAACTCTCAGTCCAAGCCAATGAAAAGTACCTGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR CAA 90 bp | TTTTGTGCCTTCTTCTGGCCTCTACAAACATGTACAGGCATTCCTGGGAGTTTAAGAGTAGGGTTCCAGTaGCTATGCCTTCAAGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: FCAFFWPLQTCTGIPGSLRVGFQ*LCLQVP Trigger: AGGAACTTGAAGGCATAGCAACTGGAACCCTACTCT...TAAACTCCCAGGAATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGCACAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR GCA 72 bp | GGTCTGTGTGGAAGTCTTTCAAGTCTAGCACATACATaGGGTAGAGGATTTACCTTACCCAAAGCAAGACTT | + |
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Preference number: 3 (lower is better) Translates to: GLCGSLSSLAHT*GRGFTLPKARL Trigger: AAGTCTTGCTTTGGGTAAGGTAAATCCTCTACCGCATGTATGTGCTAGACTTGAAAGACTTCCACACAGACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR CAA 90 bp | ACAAAGTCACATTGTTTACAGGAAACTGGATACAACTGGAGAGAATGGTATCAGTCAAAGCCCCTTAGCTaGTTTGTGTATGGACAGGGC | + |
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Preference number: 3 (lower is better) Translates to: TKSHCLQETGYNWREWYQSKPLS*FVYGQG Trigger: GCCCTGTCCATACACAAACAAGCTAAGGGGCTTTGA...CTGATACCATTCTCTCCAGTTGTATCCAGTTTCCTGTAAACAATGTGACTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR-3UTR CAA 90 bp | ACAAAGTCACATTGTTTACAGGAAACTGGATACAACTGGAGAGAATGGTATCAGCTACATACAGAGACCTaGTCCAGAGAGGAGGGGATA | + |
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Preference number: 3 (lower is better) Translates to: TKSHCLQETGYNWREWYQLHTET*SREEGI Trigger: TATCCCCTCCTCTCTGGACAAGGTCTCTGTATGTAG...CTGATACCATTCTCTCCAGTTGTATCCAGTTTCCTGTAAACAATGTGACTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CCA 72 bp | CATTGTTTACAGGAAACTGGATACAACTGGAGAGAATaGTATCAGAGAACTCAGGTCAGCCTCAGAAAGACA | + |
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Preference number: 3 (lower is better) Translates to: HCLQETGYNWRE*YQRTQVSLRKT Trigger: TGTCTTTCTGAGGCTGACCTGAGTTCTCTGATACCATTCTCTCCAGTTGTATCCAGTTTCCTGTAAACAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CCA 72 bp | ACAAAGTCACATTGTTTACAGGAAACTGGATACAACTaGAGAGAATGGTATCAGAGAACTCAGGTCAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: TKSHCLQETGYN*REWYQRTQVSL Trigger: GAGGCTGACCTGAGTTCTCTGATACCATTCTCTCCAGTTGTATCCAGTTTCCTGTAAACAATGTGACTTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR TCA 90 bp | GCCTTCTTCTGGCCTCTACAAACATGTACAGGCATTCCTGGGAGTTTACTAAACCAGCAGCAGCAGCCATaGCAGCGGGGAGCGGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: AFFWPLQTCTGIPGSLLNQQQQP*QRGAGG Trigger: GCCACCCGCTCCCCGCTGTCATGGCTGCTGCTGCTG...GTTTAGTAAACTCCCAGGAATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR GCA 90 bp | AGGAGGCGAGGTCCAACTCCTTCCATCCCATGCTGGTGTAAATCACAGCCCACCTCAGCCAGGCATTGGTaGTTCTACTGCCTCTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: RRRGPTPSIPCWCKSQPTSARHW*FYCLWG Trigger: TCCCCAGAGGCAGTAGAAGCACCAATGCCTGGCTGA...GGTGGGCTGTGATTTACACCAGCATGGGATGGAAGGAGTTGGACCTCGCCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | AGGAGGCGAGGTCCAACTCCTTCCATCCCATGCTGGTGTAAATCACAGCCCACCTGTTGGGCCCCTTCTTaGGGTGGAAGACAGCCACAA | + |
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Preference number: 4 (lower is better) Translates to: RRRGPTPSIPCWCKSQPTCWAPS*GGRQPQ Trigger: TTGTGGCTGTCTTCCACCCCAAGAAGGGGCCCAACA...GGTGGGCTGTGATTTACACCAGCATGGGATGGAAGGAGTTGGACCTCGCCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | TTGGCTACATACAGAGACCTTGTCCAGAGAGGAGGGGATAGCCCCAATGGAGTCGTGGTGGTGCCCGGCTaGGACCCTGGTTCCTTCATT | + |
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Preference number: 4 (lower is better) Translates to: LATYRDLVQRGGDSPNGVVVVPG*DPGSFI Trigger: AATGAAGGAACCAGGGTCCCAGCCGGGCACCACCAC...GACTCCATTGGGGCTATCCCCTCCTCTCTGGACAAGGTCTCTGTATGTAGCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR TCA 90 bp | TTGGCTTGGACTGAGAGTTTGGGGAAACCTTATTTGCATGTGGGAGGGCTTAGTGACGTTCTCCCTCTCTaGGGGATTGGACTGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: LAWTESLGKPYLHVGGLSDVLPL*GIGLQS Trigger: GCTCTGCAGTCCAATCCCTCAGAGAGGGAGAACGTC...ACTAAGCCCTCCCACATGCAAATAAGGTTTCCCCAAACTCTCAGTCCAAGCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR GCA 90 bp | GCCTTCTTCTGGCCTCTACAAACATGTACAGGCATTCCTGGGAGTTTACTAAACATGTGCACTTGGCCCTaGCCAGACCCTAGGGCATTG | + |
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Preference number: 4 (lower is better) Translates to: AFFWPLQTCTGIPGSLLNMCTWP*PDPRAL Trigger: CAATGCCCTAGGGTCTGGGCAGGGCCAAGTGCACAT...GTTTAGTAAACTCCCAGGAATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | TTGGCTTGGACTGAGAGTTTGGGGAAACCTTATTTGCATGTGGGAGGGCTTAGTAGGGTCACCAGCAGCTaGTCCAGCTCCTGTAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LAWTESLGKPYLHVGGLSRVTSS*SSSCKL Trigger: AAGCTTACAGGAGCTGGACCAGCTGCTGGTGACCCT...ACTAAGCCCTCCCACATGCAAATAAGGTTTCCCCAAACTCTCAGTCCAAGCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR TCA 90 bp | TTGGCTTGGACTGAGAGTTTGGGGAAACCTTATTTGCATGTGGGAGGGCTTAGTAGCGTGGGATCCACCTaGATCCTTCTTCATCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LAWTESLGKPYLHVGGLSSVGST*ILLHPG Trigger: ACCTGGATGAAGAAGGATTCAGGTGGATCCCACGCT...ACTAAGCCCTCCCACATGCAAATAAGGTTTCCCCAAACTCTCAGTCCAAGCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR TCA 90 bp | TTGGCTTGGACTGAGAGTTTGGGGAAACCTTATTTGCATGTGGGAGGGCTTAGTATTCGTCCAGGAGGGTaGCCATTGGCAGAGATGCAT | + |
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Preference number: 4 (lower is better) Translates to: LAWTESLGKPYLHVGGLSIRPGG*PLAEMH Trigger: ATGCATCTCTGCCAATGGTCACCCTCCTGGACGAAT...ACTAAGCCCTCCCACATGCAAATAAGGTTTCCCCAAACTCTCAGTCCAAGCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR GCA 90 bp | GCCTGGCTCAAGATTTTGTGCCTTCTTCTGGCCTCTACAAACATGTACAGGCATGGCCAACATACCAGTTaGCGTCATAGCCAGAGATGG | + |
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Preference number: 4 (lower is better) Translates to: AWLKILCLLLASTNMYRHGQHTS*RHSQRW Trigger: CCATCTCTGGCTATGACGGCAACTGGTATGTTGGCC...ATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGCACAAAATCTTGAGCCAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR GCA 90 bp | ATGTGGGGCTACTCACAAGTGCATGTAAGCCTGGCTCAAGATTTTGTGCCTTCTCATTGGTGCTTCTACTaGCTCTGGGGAATGTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: MWGYSQVHVSLAQDFVPSHWCFY*LWGMWQ Trigger: TTGCCACATTCCCCAGAGGCAGTAGAAGCACCAATG...AGAAGGCACAAAATCTTGAGCCAGGCTTACATGCACTTGTGAGTAGCCCCACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR GCA 90 bp | CCAGTCTCTCTGGAGGCTTCTTCATTTATGAGAGTAGGGTTCCAGTTGCTATGCTGCAGAGCACGACCATaGCTGCATCTTCGTATAGTG | + |
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Preference number: 4 (lower is better) Translates to: PVSLEASSFMRVGFQLLCCRARP*LHLRIV Trigger: CACTATACGAAGATGCAGGCATGGTCGTGCTCTGCA...GCATAGCAACTGGAACCCTACTCTCATAAATGAAGAAGCCTCCAGAGAGACTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | CCAGTCTCTCTGGAGGCTTCTTCATTTATGAGAGTAGGGTTCCAGTTGCTATGCGGACACGTTTTCAGGTaGATAGGGTTGGGAAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: PVSLEASSFMRVGFQLLCGHVFR*IGLGKG Trigger: ACCCTTTCCCAACCCTATCCACCTGAAAACGTGTCC...GCATAGCAACTGGAACCCTACTCTCATAAATGAAGAAGCCTCCAGAGAGACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | GGCTTCTTCATTTATGAGAGTAGGGTTCCAGTTGCTATGCCTTCAAGTTCCTTACCTTCAGCCAGGCATTaGTGCTTCTACTGCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: GFFIYESRVPVAMPSSSLPSARH*CFYCLW Trigger: CCAGAGGCAGTAGAAGCACCAATGCCTGGCTGAAGG...TAAGGAACTTGAAGGCATAGCAACTGGAACCCTACTCTCATAAATGAAGAAGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR TCA 90 bp | ATGTGGGGCTACTCACAAGTGCATGTAAGCCTGGCTCAAGATTTTGTGCCTTCTTCCTTCATTTCACGGTaGCTTCCATTCACATTCGAG | + |
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Preference number: 4 (lower is better) Translates to: MWGYSQVHVSLAQDFVPSSFISR*LPFTFE Trigger: CTCGAATGTGAATGGAAGTCACCGTGAAATGAAGGA...AGAAGGCACAAAATCTTGAGCCAGGCTTACATGCACTTGTGAGTAGCCCCACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR GCA 90 bp | GCCTTCTTCTGGCCTCTACAAACATGTACAGGCATTCCTGGGAGTTTACTAAACCATTTAGCCACATCCTaGAGTATCAAGGTGGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: AFFWPLQTCTGIPGSLLNHLATS*SIKVGE Trigger: CTCTCCCACCTTGATACTGCAGGATGTGGCTAAATG...GTTTAGTAAACTCCCAGGAATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR GCA 90 bp | AGGAAACTGGATACAACTGGAGAGAATGGTATCAGAGAACTCAGGTCAGCCTCATCTTTAACAATGATGTaGACTTGGCCCTGCCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: RKLDTTGENGIRELRSASSLTMM*TWPCPD Trigger: GTCTGGGCAGGGCCAAGTGCACATCATTGTTAAAGA...TGAGGCTGACCTGAGTTCTCTGATACCATTCTCTCCAGTTGTATCCAGTTTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | GGAATGAGTAAAGAAAGTGTACACTCACATAATTGGGATGTTTTAGCTACTGAGCCTGCAGTATCAAGGTaGGAGAGGGCTCCAGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: GMSKESVHSHNWDVLATEPAVSR*ERAPGP Trigger: AGGCCCTGGAGCCCTCTCCCACCTTGATACTGCAGG...CTCAGTAGCTAAAACATCCCAATTATGTGAGTGTACACTTTCTTTACTCATTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | AGAATGGTATCAGAGAACTCAGGTCAGCCTCAGAAAGACAACTACAATTTTGACCCCTCTCTGAGGGATTaGACTGCAGAGCACGACCAT | + |
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Preference number: 4 (lower is better) Translates to: RMVSENSGQPQKDNYNFDPSLRD*TAEHDH Trigger: ATGGTCGTGCTCTGCAGTCCAATCCCTCAGAGAGGG...GTCAAAATTGTAGTTGTCTTTCTGAGGCTGACCTGAGTTCTCTGATACCATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| 3UTR CAA 72 bp | GACAGCAGGTACTTTTCATTGGCTTGGACTGAGAGTTaGGGGAAACCTTATTTGCATGTGGGAGGGCTTAGT | + |
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Preference number: 4 (lower is better) Translates to: DSRYFSLAWTES*GKPYLHVGGLS Trigger: ACTAAGCCCTCCCACATGCAAATAAGGTTTCCCCAAACTCTCAGTCCAAGCCAATGAAAAGTACCTGCTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | TTTTGTGCCTTCTTCTGGCCTCTACAAACATGTACAGGCATTCCTGGGAGTTTATCACCTTGTGCTGTTTaGCTCCATGTTCAGTCTACA | + |
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Preference number: 4 (lower is better) Translates to: FCAFFWPLQTCTGIPGSLSPCAV*LHVQST Trigger: TGTAGACTGAACATGGAGCCAAACAGCACAAGGTGA...TAAACTCCCAGGAATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGCACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR TCA 90 bp | GCCTGGCTCAAGATTTTGTGCCTTCTTCTGGCCTCTACAAACATGTACAGGCATTTCATCCAGGTTATTTaGGTGATAGTCACATTCTCA | + |
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Preference number: 4 (lower is better) Translates to: AWLKILCLLLASTNMYRHFIQVI*VIVTFS Trigger: TGAGAATGTGACTATCACTCAAATAACCTGGATGAA...ATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGCACAAAATCTTGAGCCAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | ACAAAGTCACATTGTTTACAGGAAACTGGATACAACTGGAGAGAATGGTATCAGGAATTTCACCCTCTCTaGCTCTTTGATGTTGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: TKSHCLQETGYNWREWYQEFHPL*LFDVGP Trigger: GGGCCCAACATCAAAGAGCCAGAGAGGGTGAAATTC...CTGATACCATTCTCTCCAGTTGTATCCAGTTTCCTGTAAACAATGTGACTTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CCA 90 bp | AGAATGGTATCAGAGAACTCAGGTCAGCCTCAGAAAGACAACTACAATTTTGACCGTCATAGCCAGAGATaGACACGTTTTCAGGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: RMVSENSGQPQKDNYNFDRHSQR*TRFQVD Trigger: ATCCACCTGAAAACGTGTCCATCTCTGGCTATGACG...GTCAAAATTGTAGTTGTCTTTCTGAGGCTGACCTGAGTTCTCTGATACCATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 90 bp | AGCCACATCCTGCAGTATCAAGGTGGGAGAGGGCTCCAGGGCCTCTaGAGTGTTCTTAGGTCGGGCTTGCACCTTCAGCCAGGCATTGGT | + |
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Preference number: 5 (lower is better) Translates to: SHILQYQGGRGLQGL*SVLRSGLHLQPGIG Trigger: ACCAATGCCTGGCTGAAGGTGCAAGCCCGACCTAAGAACACTGCAGAGGCCCTGGAGCCCTCTCCCACCTTGATACTGCAGGATGTGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 90 bp | ACTGTGGTGGTGCCCGGCTGGGACCCTGGTTCCTTCATTTCACGGTaGCTTCCATTCACATTCGAGGGCCAAGAGATTCGTCCAGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: TVVVPGWDPGSFISR*LPFTFEGQEIRPGG Trigger: CCCTCCTGGACGAATCTCTTGGCCCTCGAATGTGAATGGAAGTCACCGTGAAATGAAGGAACCAGGGTCCCAGCCGGGCACCACCACAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 90 bp | GCAGCTGGTCCAGCTCCTGTAAGCTTTCATGCTCCACCGTGCAGGTaGTGTTCTTGCCGTCTGCCTGGCGAGAAGGTACCATGGAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: AAGPAPVSFHAPPCR*CSCRLPGEKVPWRG Trigger: ACCTCTCCATGGTACCTTCTCGCCAGGCAGACGGCAAGAACATCACCTGCACGGTGGAGCATGAAAGCTTACAGGAGCTGGACCAGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 90 bp | TGGGAAAGGGTCACCAGCAGCTGGTCCAGCTCCTGTAAGCTTTCATaGTCCACCGTGCAGGTGATGTTCTTGCCGTCTGCCTGGCGAGAA | + |
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Preference number: 5 (lower is better) Translates to: WERVTSSWSSSCKLS*STVQVMFLPSAWRE Trigger: TTCTCGCCAGGCAGACGGCAAGAACATCACCTGCACGGTGGAGCATGAAAGCTTACAGGAGCTGGACCAGCTGCTGGTGACCCTTTCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CCA 90 bp | GTCACCCGTGTTCGTGCTCCAGTTATATCCAGCCATGTCAGGCGCTaGTTTGCTGTGAGCTTCACAGGTCAGGGTCAAGTTAGTGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: VTRVRAPVISSHVRR*FAVSFTGQGQVSEA Trigger: GGCCTCACTAACTTGACCCTGACCTGTGAAGCTCACAGCAAACCAGCGCCTGACATGGCTGGATATAACTGGAGCACGAACACGGGTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CAA 90 bp | TTGGCTACATACAGAGACCTTGTCCAGAGAGGAGGGGATAGCCCCAATGGAGTCTCCCTCTCTGAGGGATaGGACTGCAGAGCACGACCA | + |
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Preference number: 5 (lower is better) Translates to: LATYRDLVQRGGDSPNGVSLSEG*DCRARP Trigger: TGGTCGTGCTCTGCAGTCCAATCCCTCAGAGAGGGA...GACTCCATTGGGGCTATCCCCTCCTCTCTGGACAAGGTCTCTGTATGTAGCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 90 bp | TTCGTGCTCCAGTTATATCCAGCCATGTCAGGCGCTGGTTTGCTGTaGGCTTCACAGGTCAGGGTCAAGTTAGTGAGGCCAACATACCAG | + |
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Preference number: 5 (lower is better) Translates to: FVLQLYPAMSGAGLL*ASQVRVKLVRPTYQ Trigger: CTGGTATGTTGGCCTCACTAACTTGACCCTGACCTGTGAAGCTCACAGCAAACCAGCGCCTGACATGGCTGGATATAACTGGAGCACGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CCA 90 bp | GTCGGGCTTGCACCTTCAGCCAGGCATTGGTGCTTCTACTGCCTCTaGGGAATGTGGCAATCTGACATTCATAGATGCCTTCGTCTTCTA | + |
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Preference number: 5 (lower is better) Translates to: VGLAPSARHWCFYCL*GMWQSDIHRCLRLL Trigger: TAGAAGACGAAGGCATCTATGAATGTCAGATTGCCACATTCCCCAGAGGCAGTAGAAGCACCAATGCCTGGCTGAAGGTGCAAGCCCGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CAA 90 bp | TTGGCTTGGACTGAGAGTTTGGGGAAACCTTATTTGCATGTGGGAGGGCTTAGTTTCAGGTGGATAGGGTaGGGAAAGGGTCACCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: LAWTESLGKPYLHVGGLSFRWIG*GKGHQQ Trigger: CTGCTGGTGACCCTTTCCCAACCCTATCCACCTGAA...ACTAAGCCCTCCCACATGCAAATAAGGTTTCCCCAAACTCTCAGTCCAAGCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CAA 90 bp | GCCTGGCTCAAGATTTTGTGCCTTCTTCTGGCCTCTACAAACATGTACAGGCATCCAGACCCTAGGGCATaGGTGACTTCGCACACAATG | + |
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Preference number: 5 (lower is better) Translates to: AWLKILCLLLASTNMYRHPDPRA*VTSHTM Trigger: CATTGTGTGCGAAGTCACCAATGCCCTAGGGTCTGG...ATGCCTGTACATGTTTGTAGAGGCCAGAAGAAGGCACAAAATCTTGAGCCAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 90 bp | CCCCTTCTTGGGGTGGAAGACAGCCACAAGAGCGTGGGATCCACCTaGATCCTTCTTCATCCAGGTTATTTGAGTGATAGTCACATTCTC | + |
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Preference number: 5 (lower is better) Translates to: PLLGVEDSHKSVGST*ILLHPGYLSDSHIL Trigger: GAGAATGTGACTATCACTCAAATAACCTGGATGAAGAAGGATTCAGGTGGATCCCACGCTCTTGTGGCTGTCTTCCACCCCAAGAAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CCA 90 bp | GCACCTTCAGCCAGGCATTGGTGCTTCTACTGCCTCTGGGGAATGTaGCAATCTGACATTCATAGATGCCTTCGTCTTCTACACTTAAGT | + |
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Preference number: 5 (lower is better) Translates to: APSARHWCFYCLWGM*QSDIHRCLRLLHLS Trigger: ACTTAAGTGTAGAAGACGAAGGCATCTATGAATGTCAGATTGCCACATTCCCCAGAGGCAGTAGAAGCACCAATGCCTGGCTGAAGGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 90 bp | TGCTTCTACTGCCTCTGGGGAATGTGGCAATCTGACATTCATAGATaGCTTCGTCTTCTACACTTAAGTTCGAGATGGCCAGAGATGCGT | + |
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Preference number: 5 (lower is better) Translates to: CFYCLWGMWQSDIHR*LRLLHLSSRWPEMR Trigger: ACGCATCTCTGGCCATCTCGAACTTAAGTGTAGAAGACGAAGGCATCTATGAATGTCAGATTGCCACATTCCCCAGAGGCAGTAGAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CCA 90 bp | TCTGACATTCATAGATGCCTTCGTCTTCTACACTTAAGTTCGAGATaGCCAGAGATGCGTTCCTCAGATCCTGTTGGGCAGCCAAGAATT | + |
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Preference number: 5 (lower is better) Translates to: SDIHRCLRLLHLSSR*PEMRSSDPVGQPRI Trigger: AATTCTTGGCTGCCCAACAGGATCTGAGGAACGCATCTCTGGCCATCTCGAACTTAAGTGTAGAAGACGAAGGCATCTATGAATGTCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CAA 90 bp | ACAAAGTCACATTGTTTACAGGAAACTGGATACAACTGGAGAGAATGGTATCAGACCCTCTCTGGCTCTTaGATGTTGGGCCCCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: TKSHCLQETGYNWREWYQTLSGS*MLGPFL Trigger: CAAGAAGGGGCCCAACATCAAAGAGCCAGAGAGGGT...CTGATACCATTCTCTCCAGTTGTATCCAGTTTCCTGTAAACAATGTGACTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 90 bp | ACAAGAGCGTGGGATCCACCTGAATCCTTCTTCATCCAGGTTATTTaGGTGATAGTCACATTCTCATTAGAAGTCAGACTACAGTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: TRAWDPPESFFIQVI*VIVTFSLEVRLQCK Trigger: CTTGCACTGTAGTCTGACTTCTAATGAGAATGTGACTATCACTCAAATAACCTGGATGAAGAAGGATTCAGGTGGATCCCACGCTCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS-3UTR CAA 90 bp | AGAATGGTATCAGAGAACTCAGGTCAGCCTCAGAAAGACAACTACAATTTTGACGAGATTAGAAGCATATaGCCCTGGCGCTTAACAGAG | + |
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Preference number: 5 (lower is better) Translates to: RMVSENSGQPQKDNYNFDEIRSI*PWRLTE Trigger: CTCTGTTAAGCGCCAGGGCAATATGCTTCTAATCTC...GTCAAAATTGTAGTTGTCTTTCTGAGGCTGACCTGAGTTCTCTGATACCATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 72 bp | TTTCCGGAGTGCATAGCAGAACAGCAGCAGCAGCCATaGCAGCGGGGAGCGGGTGGCTCGGGCGAGTTGAGC | + |
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Preference number: 6 (lower is better) Translates to: FPECIAEQQQQP*QRGAGGSGELS Trigger: GCTCAACTCGCCCGAGCCACCCGCTCCCCGCTGTCATGGCTGCTGCTGCTGTTCTGCTATGCACTCCGGAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CAA 72 bp | GGGCTCCAGGGCCTCTGCAGTGTTCTTAGGTCGGGCTaGCACCTTCAGCCAGGCATTGGTGCTTCTACTGCC | + |
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Preference number: 6 (lower is better) Translates to: GLQGLCSVLRSG*HLQPGIGASTA Trigger: GGCAGTAGAAGCACCAATGCCTGGCTGAAGGTGCAAGCCCGACCTAAGAACACTGCAGAGGCCCTGGAGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 72 bp | CTGCAGTATCAAGGTGGGAGAGGGCTCCAGGGCCTCTaGAGTGTTCTTAGGTCGGGCTTGCACCTTCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: LQYQGGRGLQGL*SVLRSGLHLQP Trigger: TGGCTGAAGGTGCAAGCCCGACCTAAGAACACTGCAGAGGCCCTGGAGCCCTCTCCCACCTTGATACTGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 72 bp | GTCACCAGCAGCTGGTCCAGCTCCTGTAAGCTTTCATaGTCCACCGTGCAGGTGATGTTCTTGCCGTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: VTSSWSSSCKLS*STVQVMFLPSA Trigger: GGCAGACGGCAAGAACATCACCTGCACGGTGGAGCATGAAAGCTTACAGGAGCTGGACCAGCTGCTGGTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 72 bp | CCAGCTCCTGTAAGCTTTCATGCTCCACCGTGCAGGTaGTGTTCTTGCCGTCTGCCTGGCGAGAAGGTACCA | + |
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Preference number: 6 (lower is better) Translates to: PAPVSFHAPPCR*CSCRLPGEKVP Trigger: TGGTACCTTCTCGCCAGGCAGACGGCAAGAACATCACCTGCACGGTGGAGCATGAAAGCTTACAGGAGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 72 bp | TTCATGCTCCACCGTGCAGGTGATGTTCTTGCCGTCTaGCTGGCGAGAAGGTACCATGGAGAGGTAGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: FMLHRAGDVLAV*LARRYHGEVAG Trigger: ACCAGCTACCTCTCCATGGTACCTTCTCGCCAGGCAGACGGCAAGAACATCACCTGCACGGTGGAGCATGAA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CCA 72 bp | CTCTCTGGCTCTTTGATGTTGGGCCCCTTCTTGGGGTaGAAGACAGCCACAAGAGCGTGGGATCCACCTGAA | + |
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Preference number: 6 (lower is better) Translates to: LSGSLMLGPFLG*KTATRAWDPPE Trigger: TTCAGGTGGATCCCACGCTCTTGTGGCTGTCTTCCACCCCAAGAAGGGGCCCAACATCAAAGAGCCAGAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CAA 90 bp | GCCAAGAATTTCACCCTCTCTGGCTCTTTGATGTTGGGCCCCTTCTaGGGGTGGAAGACAGCCACAAGAGCGTGGGATCCACCTGAATCC | + |
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Preference number: 6 (lower is better) Translates to: AKNFTLSGSLMLGPF*GWKTATRAWDPPES Trigger: GGATTCAGGTGGATCCCACGCTCTTGTGGCTGTCTTCCACCCCAAGAAGGGGCCCAACATCAAAGAGCCAGAGAGGGTGAAATTCTTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CAA 90 bp | CTCAGATCCTGTTGGGCAGCCAAGAATTTCACCCTCTCTGGCTCTTaGATGTTGGGCCCCTTCTTGGGGTGGAAGACAGCCACAAGAGCG | + |
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Preference number: 6 (lower is better) Translates to: LRSCWAAKNFTLSGS*MLGPFLGWKTATRA Trigger: CGCTCTTGTGGCTGTCTTCCACCCCAAGAAGGGGCCCAACATCAAAGAGCCAGAGAGGGTGAAATTCTTGGCTGCCCAACAGGATCTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CAA 72 bp | GTGTTCTTAGGTCGGGCTTGCACCTTCAGCCAGGCATaGGTGCTTCTACTGCCTCTGGGGAATGTGGCAATC | + |
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Preference number: 6 (lower is better) Translates to: VFLGRACTFSQA*VLLLPLGNVAI Trigger: GATTGCCACATTCCCCAGAGGCAGTAGAAGCACCAATGCCTGGCTGAAGGTGCAAGCCCGACCTAAGAACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CAA 72 bp | TGTAAGCTTTCATGCTCCACCGTGCAGGTGATGTTCTaGCCGTCTGCCTGGCGAGAAGGTACCATGGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: CKLSCSTVQVMF*PSAWREGTMER Trigger: CCTCTCCATGGTACCTTCTCGCCAGGCAGACGGCAAGAACATCACCTGCACGGTGGAGCATGAAAGCTTACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CAA 72 bp | ATAGCCAGAGATGGACACGTTTTCAGGTGGATAGGGTaGGGAAAGGGTCACCAGCAGCTGGTCCAGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: IARDGHVFRWIG*GKGHQQLVQLL Trigger: CAGGAGCTGGACCAGCTGCTGGTGACCCTTTCCCAACCCTATCCACCTGAAAACGTGTCCATCTCTGGCTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CCA 72 bp | GGCCCCTTCTTGGGGTGGAAGACAGCCACAAGAGCGTaGGATCCACCTGAATCCTTCTTCATCCAGGTTATT | + |
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Preference number: 6 (lower is better) Translates to: GPFLGWKTATRA*DPPESFFIQVI Trigger: AATAACCTGGATGAAGAAGGATTCAGGTGGATCCCACGCTCTTGTGGCTGTCTTCCACCCCAAGAAGGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 72 bp | TTCACATTCGAGGGCCAAGAGATTCGTCCAGGAGGGTaGCCATTGGCAGAGATGCATTTAGCCACATCCTGC | + |
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Preference number: 6 (lower is better) Translates to: FTFEGQEIRPGG*PLAEMHLATSC Trigger: GCAGGATGTGGCTAAATGCATCTCTGCCAATGGTCACCCTCCTGGACGAATCTCTTGGCCCTCGAATGTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CCA 72 bp | GTTCGTGCTCCAGTTATATCCAGCCATGTCAGGCGCTaGTTTGCTGTGAGCTTCACAGGTCAGGGTCAAGTT | + |
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Preference number: 6 (lower is better) Translates to: VRAPVISSHVRR*FAVSFTGQGQV Trigger: AACTTGACCCTGACCTGTGAAGCTCACAGCAAACCAGCGCCTGACATGGCTGGATATAACTGGAGCACGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CAA 72 bp | ATGATGTGCACTTGGCCCTGCCCAGACCCTAGGGCATaGGTGACTTCGCACACAATGACCGTGTTATTGAGA | + |
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Preference number: 6 (lower is better) Translates to: MMCTWPCPDPRA*VTSHTMTVLLR Trigger: TCTCAATAACACGGTCATTGTGTGCGAAGTCACCAATGCCCTAGGGTCTGGGCAGGGCCAAGTGCACATCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 72 bp | TCAGGTTTCTCTTTAACAATGATGTGCACTTGGCCCTaGCCAGACCCTAGGGCATTGGTGACTTCGCACACA | + |
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Preference number: 6 (lower is better) Translates to: SGFSLTMMCTWP*PDPRALVTSHT Trigger: TGTGTGCGAAGTCACCAATGCCCTAGGGTCTGGGCAGGGCCAAGTGCACATCATTGTTAAAGAGAAACCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CCA 72 bp | GCACCTTCAGCCAGGCATTGGTGCTTCTACTGCCTCTaGGGAATGTGGCAATCTGACATTCATAGATGCCTT | + |
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Preference number: 6 (lower is better) Translates to: APSARHWCFYCL*GMWQSDIHRCL Trigger: AAGGCATCTATGAATGTCAGATTGCCACATTCCCCAGAGGCAGTAGAAGCACCAATGCCTGGCTGAAGGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 72 bp | GGGGTGGAAGACAGCCACAAGAGCGTGGGATCCACCTaGATCCTTCTTCATCCAGGTTATTTGAGTGATAGT | + |
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Preference number: 6 (lower is better) Translates to: GVEDSHKSVGST*ILLHPGYLSDS Trigger: ACTATCACTCAAATAACCTGGATGAAGAAGGATTCAGGTGGATCCCACGCTCTTGTGGCTGTCTTCCACCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 72 bp | GTGATAGTCACATTCTCATTAGAAGTCAGACTACAGTaGAAGGTGGTCGACCCTCCCAAGACGCCTGTCGAA | + |
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Preference number: 6 (lower is better) Translates to: VIVTFSLEVRLQ*KVVDPPKTPVE Trigger: TTCGACAGGCGTCTTGGGAGGGTCGACCACCTTGCACTGTAGTCTGACTTCTAATGAGAATGTGACTATCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 72 bp | TGCTGCATATTCTCAGGTTTCTCTTTAACAATGATGTaGACTTGGCCCTGCCCAGACCCTAGGGCATTGGTG | + |
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Preference number: 6 (lower is better) Translates to: CCIFSGFSLTMM*TWPCPDPRALV Trigger: CACCAATGCCCTAGGGTCTGGGCAGGGCCAAGTGCACATCATTGTTAAAGAGAAACCTGAGAATATGCAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CAA 72 bp | TTGAGACCATCCTCTACGGTGGAGATTAGAAGCATATaGCCCTGGCGCTTAACAGAGTTGGGAAAGTCACCC | + |
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Preference number: 6 (lower is better) Translates to: LRPSSTVEIRSI*PWRLTELGKSP Trigger: GGGTGACTTTCCCAACTCTGTTAAGCGCCAGGGCAATATGCTTCTAATCTCCACCGTAGAGGATGGTCTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS CCA 72 bp | ATATTCTCAGGTTTCTCTTTAACAATGATGTGCACTTaGCCCTGCCCAGACCCTAGGGCATTGGTGACTTCG | + |
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Preference number: 6 (lower is better) Translates to: IFSGFSLTMMCT*PCPDPRALVTS Trigger: CGAAGTCACCAATGCCCTAGGGTCTGGGCAGGGCCAAGTGCACATCATTGTTAAAGAGAAACCTGAGAATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS GCA 72 bp | TGCCTCTGGGGAATGTGGCAATCTGACATTCATAGATaGCTTCGTCTTCTACACTTAAGTTCGAGATGGCCA | + |
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Preference number: 6 (lower is better) Translates to: CLWGMWQSDIHR*LRLLHLSSRWP Trigger: TGGCCATCTCGAACTTAAGTGTAGAAGACGAAGGCATCTATGAATGTCAGATTGCCACATTCCCCAGAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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| CDS TCA 72 bp | TGGGATCCACCTGAATCCTTCTTCATCCAGGTTATTTaGGTGATAGTCACATTCTCATTAGAAGTCAGACTA | + |
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Preference number: 6 (lower is better) Translates to: WDPPESFFIQVI*VIVTFSLEVRL Trigger: TAGTCTGACTTCTAATGAGAATGTGACTATCACTCAAATAACCTGGATGAAGAAGGATTCAGGTGGATCCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043517.8 |
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