Pregenerated sensors for PVALB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005716Ensembl transcript IDs: ENSMUST00000005860.16, ENSMUST00000120592.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AACAAACTGAACAGAAACTCAGGAGGGCCGCGAGAAGGACTGAGATaGGGCGTTGGGGATGGAGAGGTGGGGGACCCAAGCAGTCAGCGC | + |
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Preference number: 1 (lower is better) Translates to: NKLNRNSGGPREGLR*GVGDGEVGDPSSQR Trigger: GCGCTGACTGCTTGGGTCCCCCACCTCTCCATCCCCAACGCCCCATCTCAGTCCTTCTCGCGGCCCTCCTGAGTTTCTGTTCAGTTTGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CCA 90 bp | CAACACCCTGCCAGGCCTGGGTCCTCCCTACAGGTGGTGTCCGATTaGTACAGCCTTTATTGTTTCTCCAGCATTTCCAGAAGAATGGCG | + |
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Preference number: 1 (lower is better) Translates to: QHPARPGSSLQVVSD*YSLYCFSSISRRMA Trigger: CGCCATTCTTCTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAATCGGACACCACCTGTAGGGAGGACCCAGGCCTGGCAGGGTGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CCA 90 bp | ACTTGCCAAACCAACACCCTGCCAGGCCTGGGTCCTCCCTACAGGTaGTGTCCGATTGGTACAGCCTTTATTGTTTCTCCAGCATTTCCA | + |
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Preference number: 1 (lower is better) Translates to: TCQTNTLPGLGPPYR*CPIGTAFIVSPAFP Trigger: TGGAAATGCTGGAGAAACAATAAAGGCTGTACCAATCGGACACCACCTGTAGGGAGGACCCAGGCCTGGCAGGGTGTTGGTTTGGCAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR TCA 90 bp | GGCAGTTTCTGTATCTTTAAGATGGACGATCCATCACCCCCATCTCCTTGTGGGGGCCGCGAGAAGGACTaGGATGGGGCGTTGGGGATG | + |
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Preference number: 2 (lower is better) Translates to: GSFCIFKMDDPSPPSPCGGREKD*DGALGM Trigger: CATCCCCAACGCCCCATCTCAGTCCTTCTCGCGGCC...CCCACAAGGAGATGGGGGTGATGGATCGTCCATCTTAAAGATACAGAAACTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CAA 90 bp | CCAACACCCTGCCAGGCCTGGGTCCTCCCTACAGGTGGTGTCCGATaGGTACAGCCTTTATTGTTTCTCCAGCATTTCCAGAAGAATGGC | + |
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Preference number: 2 (lower is better) Translates to: PTPCQAWVLPTGGVR*VQPLLFLQHFQKNG Trigger: GCCATTCTTCTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAATCGGACACCACCTGTAGGGAGGACCCAGGCCTGGCAGGGTGTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR TCA 90 bp | TTGGTACAGCCTTTATTGTTTCTCCAGCATTTCCAGAAGAATGGCGTCATCCGAGGCCGCGAGAAGGACTaGGATGGGGCGTTGGGGATG | + |
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Preference number: 2 (lower is better) Translates to: LVQPLLFLQHFQKNGVIRGREKD*DGALGM Trigger: CATCCCCAACGCCCCATCTCAGTCCTTCTCGCGGCC...TCGGATGACGCCATTCTTCTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR CCA 90 bp | CCAAGCAGGCAGGAGATATCGGGGCGTTGTCCTTTGACTTATCTCACTTTTTCTTTGGGGATGGAGAGGTaGGGGACCCAAGCAGTCAGC | + |
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Preference number: 2 (lower is better) Translates to: PSRQEISGRCPLTYLTFSLGMER*GTQAVS Trigger: GCTGACTGCTTGGGTCCCCCACCTCTCCATCCCCAA...AGAAAAAGTGAGATAAGTCAAAGGACAACGCCCCGATATCTCCTGCCTGCTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR CCA 90 bp | GATCCATCACCCCCATCTCCTTGTGGGAAAGGTGCAGAGATTGAACGAGGTGGCGCATTTCCAGAAGAATaGCGTCATCCGAGGGCCATA | + |
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Preference number: 2 (lower is better) Translates to: DPSPPSPCGKGAEIERGGAFPEE*RHPRAI Trigger: TATGGCCCTCGGATGACGCCATTCTTCTGGAAATGC...GCCACCTCGTTCAATCTCTGCACCTTTCCCACAAGGAGATGGGGGTGATGGATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR TCA 90 bp | AAAAACTTGCCAAACCAACACCCTGCCAGGCCTGGGTCCTCCCTACAGGTGGTGATAACACAAACAAACTaGACAGAAACTCAGGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: KNLPNQHPARPGSSLQVVITQTN*TETQEG Trigger: GCCCTCCTGAGTTTCTGTTCAGTTTGTTTGTGTTAT...CACCACCTGTAGGGAGGACCCAGGCCTGGCAGGGTGTTGGTTTGGCAAGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGATAGAGTGTCATTGGAGTCCTTTGATCTAGCTAGTCCTGAAGGACTCAACACACCCTGCCAGGCCTaGGTCCTCCCTACAGGTGGT | + |
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Preference number: 2 (lower is better) Translates to: IDRVSLESFDLASPEGLNTPCQA*VLPTGG Trigger: ACCACCTGTAGGGAGGACCCAGGCCTGGCAGGGTGT...GTTGAGTCCTTCAGGACTAGCTAGATCAAAGGACTCCAATGACACTCTATCAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGATAGAGTGTCATTGGAGTCCTTTGATCTAGCTAGTCCTGAAGGACTCAACTTGGGGATGGAGAGGTaGGGGACCCAAGCAGTCAGC | + |
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Preference number: 2 (lower is better) Translates to: IDRVSLESFDLASPEGLNLGMER*GTQAVS Trigger: GCTGACTGCTTGGGTCCCCCACCTCTCCATCCCCAA...GTTGAGTCCTTCAGGACTAGCTAGATCAAAGGACTCCAATGACACTCTATCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR TCA 90 bp | GCATTTCCAGAAGAATGGCGTCATCCGAGGGCCATAGAGGATGGGGGAGTAAAAATAACACAAACAAACTaGACAGAAACTCAGGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: AFPEEWRHPRAIEDGGVKITQTN*TETQEG Trigger: GCCCTCCTGAGTTTCTGTTCAGTTTGTTTGTGTTAT...TTTTACTCCCCCATCCTCTATGGCCCTCGGATGACGCCATTCTTCTGGAAATGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTCAAAAGCAATTGATAGAGTGTCATTGGAGTCCTTTGATCTAGCTAGTCCTGCATTTCCAGAAGAATaGCGTCATCCGAGGGCCATA | + |
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Preference number: 2 (lower is better) Translates to: KSKAIDRVSLESFDLASPAFPEE*RHPRAI Trigger: TATGGCCCTCGGATGACGCCATTCTTCTGGAAATGC...AGGACTAGCTAGATCAAAGGACTCCAATGACACTCTATCAATTGCTTTTGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGATAGAGTGTCATTGGAGTCCTTTGATCTAGCTAGTCCTGAAGGACTCAACCAGGTGGTGTCCGATTaGTACAGCCTTTATTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: IDRVSLESFDLASPEGLNQVVSD*YSLYCF Trigger: GAAACAATAAAGGCTGTACCAATCGGACACCACCTG...GTTGAGTCCTTCAGGACTAGCTAGATCAAAGGACTCCAATGACACTCTATCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR TCA 90 bp | AGGTATTTTATCACAGCAAAGTCAAAAGCAATTGATAGAGTGTCATTGGAGTCCCGGGGCGTTGTCCTTTaGCTTATCTCACTTTTTCTA | + |
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Preference number: 2 (lower is better) Translates to: RYFITAKSKAIDRVSLESRGVVL*LISLFL Trigger: TAGAAAAAGTGAGATAAGTCAAAGGACAACGCCCCG...GGACTCCAATGACACTCTATCAATTGCTTTTGACTTTGCTGTGATAAAATACCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CCA 72 bp | CTCAGGAGGGCCGCGAGAAGGACTGAGATGGGGCGTTaGGGATGGAGAGGTGGGGGACCCAAGCAGTCAGCG | + |
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Preference number: 3 (lower is better) Translates to: LRRAARRTEMGR*GWRGGGPKQSA Trigger: CGCTGACTGCTTGGGTCCCCCACCTCTCCATCCCCAACGCCCCATCTCAGTCCTTCTCGCGGCCCTCCTGAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CCA 72 bp | AACAGAAACTCAGGAGGGCCGCGAGAAGGACTGAGATaGGGCGTTGGGGATGGAGAGGTGGGGGACCCAAGC | + |
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Preference number: 3 (lower is better) Translates to: NRNSGGPREGLR*GVGDGEVGDPS Trigger: GCTTGGGTCCCCCACCTCTCCATCCCCAACGCCCCATCTCAGTCCTTCTCGCGGCCCTCCTGAGTTTCTGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CCA 72 bp | ACCAACACCCTGCCAGGCCTGGGTCCTCCCTACAGGTaGTGTCCGATTGGTACAGCCTTTATTGTTTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: TNTLPGLGPPYR*CPIGTAFIVSP Trigger: TGGAGAAACAATAAAGGCTGTACCAATCGGACACCACCTGTAGGGAGGACCCAGGCCTGGCAGGGTGTTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CCA 72 bp | GCCAGGCCTGGGTCCTCCCTACAGGTGGTGTCCGATTaGTACAGCCTTTATTGTTTCTCCAGCATTTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: ARPGSSLQVVSD*YSLYCFSSISR Trigger: TCTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAATCGGACACCACCTGTAGGGAGGACCCAGGCCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR CAA 90 bp | GATCCATCACCCCCATCTCCTTGTGGGAAAGGTGCAGAGATTGAACGAGGTGGCTTGGTACAGCCTTTATaGTTTCTCCAGCATTTCCAG | + |
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Preference number: 3 (lower is better) Translates to: DPSPPSPCGKGAEIERGGLVQPL*FLQHFQ Trigger: CTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAA...GCCACCTCGTTCAATCTCTGCACCTTTCCCACAAGGAGATGGGGGTGATGGATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR GCA 72 bp | CTAGTCCTGAAGGACTCAACCCCTTCCCTTCCCTTCTaGTCTTTAAAAGGCAGTTTCTGTATCTTTAAGATG | + |
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Preference number: 3 (lower is better) Translates to: LVLKDSTPSLPF*SLKGSFCIFKM Trigger: CATCTTAAAGATACAGAAACTGCCTTTTAAAGAGCAGAAGGGAAGGGAAGGGGTTGAGTCCTTCAGGACTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR CAA 90 bp | AGGTATTTTATCACAGCAAAGTCAAAAGCAATTGATAGAGTGTCATTGGAGTCCATCACCCCCATCTCCTaGTGGGAAAGGTGCAGAGAT | + |
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Preference number: 3 (lower is better) Translates to: RYFITAKSKAIDRVSLESITPIS*WERCRD Trigger: ATCTCTGCACCTTTCCCACAAGGAGATGGGGGTGAT...GGACTCCAATGACACTCTATCAATTGCTTTTGACTTTGCTGTGATAAAATACCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR-3UTR CAA 90 bp | ATCACAGCAAAGTCAAAAGCAATTGATAGAGTGTCATTGGAGTCCTTTGATCTATTGGTACAGCCTTTATaGTTTCTCCAGCATTTCCAG | + |
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Preference number: 3 (lower is better) Translates to: ITAKSKAIDRVSLESFDLLVQPL*FLQHFQ Trigger: CTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAA...TAGATCAAAGGACTCCAATGACACTCTATCAATTGCTTTTGACTTTGCTGTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR GCA 90 bp | AAAAACTTGCCAAACCAACACCCTGCCAGGCCTGGGTCCTCCCTACAGGTGGTGCTTCAACCCCAATCTTaGCGTCCCCATCCTTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: KNLPNQHPARPGSSLQVVLQPQS*RPHPCL Trigger: GAGACAAGGATGGGGACGGCAAGATTGGGGTTGAAG...CACCACCTGTAGGGAGGACCCAGGCCTGGCAGGGTGTTGGTTTGGCAAGTTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CAA 72 bp | TGCCAGGCCTGGGTCCTCCCTACAGGTGGTGTCCGATaGGTACAGCCTTTATTGTTTCTCCAGCATTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: CQAWVLPTGGVR*VQPLLFLQHFQ Trigger: CTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAATCGGACACCACCTGTAGGGAGGACCCAGGCCTGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CCA 90 bp | ACTGAACAGAAACTCAGGAGGGCCGCGAGAAGGACTGAGATGGGGCGTTGGGGATGGAAGAACTTTTTGTaGTCGAAGGAGTCTGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: TEQKLRRAARRTEMGRWGWKNFL*SKESAA Trigger: TGCTGCAGACTCCTTCGACCACAAAAAGTTCTTCCA...TCCCCAACGCCCCATCTCAGTCCTTCTCGCGGCCCTCCTGAGTTTCTGTTCAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR TCA 90 bp | GCATTTCCAGAAGAATGGCGTCATCCGAGGGCCATAGAGGATGGGGGAGTAAAACAAGTCTCTGGCATCTaGGGAGAAGCCCTTCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: AFPEEWRHPRAIEDGGVKQVSGI*GEALQN Trigger: ATTCTGAAGGGCTTCTCCTCAGATGCCAGAGACTTG...TTTTACTCCCCCATCCTCTATGGCCCTCGGATGACGCCATTCTTCTGGAAATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR GCA 90 bp | GGCAGTTTCTGTATCTTTAAGATGGACGATCCATCACCCCCATCTCCTTGTGGGCTTCAACCCCAATCTTaGCGTCCCCATCCTTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: GSFCIFKMDDPSPPSPCGLQPQS*RPHPCL Trigger: GAGACAAGGATGGGGACGGCAAGATTGGGGTTGAAG...CCCACAAGGAGATGGGGGTGATGGATCGTCCATCTTAAAGATACAGAAACTGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CCA 90 bp | GATCCATCACCCCCATCTCCTTGTGGGAAAGGTGCAGAGATTGAACGAGGTGGCTGGAAGAACTTTTTGTaGTCGAAGGAGTCTGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: DPSPPSPCGKGAEIERGGWKNFL*SKESAA Trigger: TGCTGCAGACTCCTTCGACCACAAAAAGTTCTTCCA...GCCACCTCGTTCAATCTCTGCACCTTTCCCACAAGGAGATGGGGGTGATGGATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR TCA 90 bp | GGCAGTTTCTGTATCTTTAAGATGGACGATCCATCACCCCCATCTCCTTGTGGGCAAGTCTCTGGCATCTaGGGAGAAGCCCTTCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: GSFCIFKMDDPSPPSPCGQVSGI*GEALQN Trigger: ATTCTGAAGGGCTTCTCCTCAGATGCCAGAGACTTG...CCCACAAGGAGATGGGGGTGATGGATCGTCCATCTTAAAGATACAGAAACTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CCA 90 bp | GGCAGTTTCTGTATCTTTAAGATGGACGATCCATCACCCCCATCTCCTTGTGGGTTCAGGCCCACCATCTaGAAGAACTTTTTGTGGTCG | + |
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Preference number: 4 (lower is better) Translates to: GSFCIFKMDDPSPPSPCGFRPTI*KNFLWS Trigger: CGACCACAAAAAGTTCTTCCAGATGGTGGGCCTGAA...CCCACAAGGAGATGGGGGTGATGGATCGTCCATCTTAAAGATACAGAAACTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CCA 90 bp | GTCCGATTGGTACAGCCTTTATTGTTTCTCCAGCATTTCCAGAAGAATGGCGTCAGAAGCCCTTCAGAATaGACCCCAGCTCATCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: VRLVQPLLFLQHFQKNGVRSPSE*TPAHPP Trigger: AGGAGGATGAGCTGGGGTCCATTCTGAAGGGCTTCT...GACGCCATTCTTCTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAATCGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CAA 72 bp | CTCCCTACAGGTGGTGTCCGATTGGTACAGCCTTTATaGTTTCTCCAGCATTTCCAGAAGAATGGCGTCATC | + |
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Preference number: 4 (lower is better) Translates to: LPTGGVRLVQPL*FLQHFQKNGVI Trigger: GATGACGCCATTCTTCTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAATCGGACACCACCTGTAGGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CAA 72 bp | GCACTCAGTACCAAGCAGGCAGGAGATATCGGGGCGTaGTCCTTTGACTTATCTCACTTTTTCTACTATACC | + |
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Preference number: 4 (lower is better) Translates to: ALSTKQAGDIGA*SFDLSHFFYYT Trigger: GGTATAGTAGAAAAAGTGAGATAAGTCAAAGGACAACGCCCCGATATCTCCTGCCTGCTTGGTACTGAGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CCA 90 bp | TTAAAAGGCAGTTTCTGTATCTTTAAGATGGACGATCCATCACCCCCATCTCCTTTCAGGCCCACCATCTaGAAGAACTTTTTGTGGTCG | + |
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Preference number: 4 (lower is better) Translates to: LKGSFCIFKMDDPSPPSPFRPTI*KNFLWS Trigger: CGACCACAAAAAGTTCTTCCAGATGGTGGGCCTGAA...AGGAGATGGGGGTGATGGATCGTCCATCTTAAAGATACAGAAACTGCCTTTTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| 3UTR CAA 72 bp | ATCACAGCAAAGTCAAAAGCAATTGATAGAGTGTCATaGGAGTCCTTTGATCTAGCTAGTCCTGAAGGACTC | + |
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Preference number: 4 (lower is better) Translates to: ITAKSKAIDRVS*ESFDLASPEGL Trigger: GAGTCCTTCAGGACTAGCTAGATCAAAGGACTCCAATGACACTCTATCAATTGCTTTTGACTTTGCTGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CAA 90 bp | GATCCATCACCCCCATCTCCTTGTGGGAAAGGTGCAGAGATTGAACGAGGTGGCTCTTCAACCCCAATCTaGCCGTCCCCATCCTTGTCT | + |
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Preference number: 5 (lower is better) Translates to: DPSPPSPCGKGAEIERGGSSTPI*PSPSLS Trigger: AGACAAGGATGGGGACGGCAAGATTGGGGTTGAAGA...GCCACCTCGTTCAATCTCTGCACCTTTCCCACAAGGAGATGGGGGTGATGGATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CAA 90 bp | GGCAGTTTCTGTATCTTTAAGATGGACGATCCATCACCCCCATCTCCTTGTGGGGCTCCTATCGCCTTCTaGATGTCCTCAGCGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: GSFCIFKMDDPSPPSPCGAPIAF*MSSALS Trigger: GCTCAGCGCTGAGGACATCAAGAAGGCGATAGGAGC...CCCACAAGGAGATGGGGGTGATGGATCGTCCATCTTAAAGATACAGAAACTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CAA 90 bp | TTGGTACAGCCTTTATTGTTTCTCCAGCATTTCCAGAAGAATGGCGTCATCCGATTGCCGTCCCCATCCTaGTCTCCAGCGGCCAGAAGC | + |
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Preference number: 5 (lower is better) Translates to: LVQPLLFLQHFQKNGVIRLPSPS*SPAARS Trigger: GCTTCTGGCCGCTGGAGACAAGGATGGGGACGGCAA...TCGGATGACGCCATTCTTCTGGAAATGCTGGAGAAACAATAAAGGCTGTACCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS CCA 90 bp | TCCGGGTTCTTTTTCTTCAGGCCCACCATCTGGAAGAACTTTTTGTaGTCGAAGGAGTCTGCAGCAGCAAAGGCTCCTATCGCCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: SGFFFFRPTIWKNFL*SKESAAAKAPIAFL Trigger: CAAGAAGGCGATAGGAGCCTTTGCTGCTGCAGACTCCTTCGACCACAAAAAGTTCTTCCAGATGGTGGGCCTGAAGAAAAAGAACCCGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS TCA 90 bp | CTGAGGAGAAGCCCTTCAGAATGGACCCCAGCTCATCCTCCTCAATaGAGCCACTTTTGTCTTTGTCCAGAATATGGAACACCTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: LRRSPSEWTPAHPPQ*SHFCLCPEYGTPSS Trigger: TGAAGAAGGTGTTCCATATTCTGGACAAAGACAAAAGTGGCTTCATTGAGGAGGATGAGCTGGGGTCCATTCTGAAGGGCTTCTCCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CAA 90 bp | GGCAGTTTCTGTATCTTTAAGATGGACGATCCATCACCCCCATCTCCTTGTGGGATCTGGAAGAACTTTTaGTGGTCGAAGGAGTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: GSFCIFKMDDPSPPSPCGIWKNF*WSKESA Trigger: TGCAGACTCCTTCGACCACAAAAAGTTCTTCCAGAT...CCCACAAGGAGATGGGGGTGATGGATCGTCCATCTTAAAGATACAGAAACTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CAA 90 bp | TTAAAAGGCAGTTTCTGTATCTTTAAGATGGACGATCCATCACCCCCATCTCCTTCTTCAACCCCAATCTaGCCGTCCCCATCCTTGTCT | + |
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Preference number: 5 (lower is better) Translates to: LKGSFCIFKMDDPSPPSPSSTPI*PSPSLS Trigger: AGACAAGGATGGGGACGGCAAGATTGGGGTTGAAGA...AGGAGATGGGGGTGATGGATCGTCCATCTTAAAGATACAGAAACTGCCTTTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CAA 90 bp | AGGTATTTTATCACAGCAAAGTCAAAAGCAATTGATAGAGTGTCATTGGAGTCCGCTCCTATCGCCTTCTaGATGTCCTCAGCGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: RYFITAKSKAIDRVSLESAPIAF*MSSALS Trigger: GCTCAGCGCTGAGGACATCAAGAAGGCGATAGGAGC...GGACTCCAATGACACTCTATCAATTGCTTTTGACTTTGCTGTGATAAAATACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS-3UTR CAA 90 bp | TTAAAAGGCAGTTTCTGTATCTTTAAGATGGACGATCCATCACCCCCATCTCCTATCTGGAAGAACTTTTaGTGGTCGAAGGAGTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: LKGSFCIFKMDDPSPPSPIWKNF*WSKESA Trigger: TGCAGACTCCTTCGACCACAAAAAGTTCTTCCAGAT...AGGAGATGGGGGTGATGGATCGTCCATCTTAAAGATACAGAAACTGCCTTTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS CAA 90 bp | ACCAGAGTGGAGAATTCTTCAACCCCAATCTTGCCGTCCCCATCCTaGTCTCCAGCGGCCAGAAGCGTCTTTGTTTCTTTAGCAGACAAG | + |
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Preference number: 6 (lower is better) Translates to: TRVENSSTPILPSPS*SPAARSVFVSLADK Trigger: CTTGTCTGCTAAAGAAACAAAGACGCTTCTGGCCGCTGGAGACAAGGATGGGGACGGCAAGATTGGGGTTGAAGAATTCTCCACTCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS TCA 72 bp | CGTCTTTGTTTCTTTAGCAGACAAGTCTCTGGCATCTaGGGAGAAGCCCTTCAGAATGGACCCCAGCTCATC | + |
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Preference number: 6 (lower is better) Translates to: RLCFFSRQVSGI*GEALQNGPQLI Trigger: GATGAGCTGGGGTCCATTCTGAAGGGCTTCTCCTCAGATGCCAGAGACTTGTCTGCTAAAGAAACAAAGACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS CAA 72 bp | GAGAATTCTTCAACCCCAATCTTGCCGTCCCCATCCTaGTCTCCAGCGGCCAGAAGCGTCTTTGTTTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: ENSSTPILPSPS*SPAARSVFVSL Trigger: TAAAGAAACAAAGACGCTTCTGGCCGCTGGAGACAAGGATGGGGACGGCAAGATTGGGGTTGAAGAATTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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| CDS TCA 72 bp | AGCCCTTCAGAATGGACCCCAGCTCATCCTCCTCAATaGAGCCACTTTTGTCTTTGTCCAGAATATGGAACA | + |
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Preference number: 6 (lower is better) Translates to: SPSEWTPAHPPQ*SHFCLCPEYGT Trigger: TGTTCCATATTCTGGACAAAGACAAAAGTGGCTTCATTGAGGAGGATGAGCTGGGGTCCATTCTGAAGGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005860.16 ENSMUST00000120592.2 |
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