Pregenerated sensors for PURG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049184Ensembl transcript IDs: ENSMUST00000070340.6, ENSMUST00000078058.5
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATACCTGTTTTCCTTTCCATGCAGGAACGCCAAGTACAGAAGCCTTaGGCTCATGATGAACTTCAGTTCATTTCTTTCATCGAATGCCTT | + |
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Preference number: 1 (lower is better) Translates to: IPVFLSMQERQVQKP*AHDELQFISFIECL Trigger: AAGGCATTCGATGAAAGAAATGAACTGAAGTTCATCATGAGCGCAAGGCTTCTGTACTTGGCGTTCCTGCATGGAAAGGAAAACAGGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| 3UTR-3UTR GCA 90 bp | CATATAAACAGAGGAAGGGAGGGAACTTTTGAGTTTCAAGCCTTGTTCAGCATGCTCCTCCTCCCTCAATaGTGGCAAATAGCTATTTGG | + |
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Preference number: 2 (lower is better) Translates to: HINRGREGTFEFQALFSMLLLPQ*WQIAIW Trigger: CCAAATAGCTATTTGCCAGCATTGAGGGAGGAGGAG...CATGCTGAACAAGGCTTGAAACTCAAAAGTTCCCTCCCTTCCTCTGTTTATATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| 3UTR-3UTR CCA 90 bp | GAGGGAACTTTTGAGTTTCAAGCCTTGTTCAGCATGTGTGCAGTTAGCATCCACCTCCTCCCTCAATGCTaGCAAATAGCTATTTGGAAA | + |
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Preference number: 2 (lower is better) Translates to: EGTFEFQALFSMCAVSIHLLPQC*QIAIWK Trigger: TTTCCAAATAGCTATTTGCCAGCATTGAGGGAGGAG...GTGGATGCTAACTGCACACATGCTGAACAAGGCTTGAAACTCAAAAGTTCCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| 3UTR-3UTR GCA 90 bp | CGGATTGAAGTGATCCTTCCTCCTCCAAATTTAAACTCAGAGTTAGACAGTTACCTGTTTTCCTTTCCATaGAGGAACGCCAAGTACAGA | + |
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Preference number: 2 (lower is better) Translates to: RIEVILPPPNLNSELDSYLFSFP*RNAKYR Trigger: TCTGTACTTGGCGTTCCTGCATGGAAAGGAAAACAG...GTAACTGTCTAACTCTGAGTTTAAATTTGGAGGAGGAAGGATCACTTCAATCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| 3UTR-3UTR GCA 90 bp | TACAGTACAATACAGTCACAACCCATGAGAACCTTTGAAATACAATACAGGACACAAGTACAGAAGCCTTaGGCTCATGATGAACTTCAG | + |
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Preference number: 2 (lower is better) Translates to: YSTIQSQPMRTFEIQYRTQVQKP*AHDELQ Trigger: CTGAAGTTCATCATGAGCGCAAGGCTTCTGTACTTG...TGTCCTGTATTGTATTTCAAAGGTTCTCATGGGTTGTGACTGTATTGTACTGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| 3UTR CCA 72 bp | AGCATGTGTGCAGTTAGCATCCACAAAAAGCACCATTaGATTATGGAGGAATTAGCACCACAGGAGTTTAGG | + |
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Preference number: 3 (lower is better) Translates to: SMCAVSIHKKHH*IMEELAPQEFR Trigger: CCTAAACTCCTGTGGTGCTAATTCCTCCATAATCCAATGGTGCTTTTTGTGGATGCTAACTGCACACATGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| 3UTR-3UTR CAA 90 bp | GACTTCTTTTCATACAGTACAATACAGTCACAACCCATGAGAACCTTTGAAATACAGGACAAAACCACCTaGTACCCTGTTAACACTAAC | + |
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Preference number: 3 (lower is better) Translates to: DFFSYSTIQSQPMRTFEIQDKTT*YPVNTN Trigger: GTTAGTGTTAACAGGGTACAAGGTGGTTTTGTCCTG...TATTTCAAAGGTTCTCATGGGTTGTGACTGTATTGTACTGTATGAAAAGAAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| 3UTR GCA 72 bp | AGTATTTTCAAGTCTATATGTCTCCTCCTCCCTCAATaGTGGCAAATAGCTATTTGGAAAATGAAAGGTTTA | + |
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Preference number: 3 (lower is better) Translates to: SIFKSICLLLPQ*WQIAIWKMKGL Trigger: TAAACCTTTCATTTTCCAAATAGCTATTTGCCAGCATTGAGGGAGGAGGAGACATATAGACTTGAAAATACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR TCA 90 bp | CCCCTGTCCCCAGCAAACCAGACTGAGTCCAGAAGTCCTCCAGTGTGGTGGGGGCTATATAGTCCGTTTTaGGGACACTGTGAGGATGCT | + |
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Preference number: 4 (lower is better) Translates to: PLSPANQTESRSPPVWWGLYSPF*GHCEDA Trigger: AGCATCCTCACAGTGTCCTCAAAACGGACTATATAG...CCCCCACCACACTGGAGGACTTCTGGACTCAGTCTGGTTTGCTGGGGACAGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR TCA 90 bp | TCCATACCTGTTTTCCTTTCCATGCAGGAACGCCAAGTACAGAAGCCTTGCGCTCTGATTAGGGGTGGCTaGCGCGGAGTAGTGGGGGTA | + |
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Preference number: 4 (lower is better) Translates to: SIPVFLSMQERQVQKPCALIRGG*RGVVGV Trigger: TACCCCCACTACTCCGCGTCAGCCACCCCTAATCAG...AGCGCAAGGCTTCTGTACTTGGCGTTCCTGCATGGAAAGGAAAACAGGTATGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | CCCCTGTCCCCAGCAAACCAGACTGAGTCCAGAAGTCCTCCAGTGTGGTGGGGGTTCAATCATACCTTGTaGTGGGAGGACAATAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: PLSPANQTESRSPPVWWGFNHTL*WEDNSL Trigger: CAGACTATTGTCCTCCCAGCACAAGGTATGATTGAA...CCCCCACCACACTGGAGGACTTCTGGACTCAGTCTGGTTTGCTGGGGACAGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | CCAATGGCGTCCATACCTGTTTTCCTTTCCATGCAGGAACGCCAAGTACAGAAGGTCCTTCAGCTCTGCTaGTACCGACAGGGAGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: PMASIPVFLSMQERQVQKVLQLC*YRQGEG Trigger: ACCCTCTCCCTGTCGGTAGCAGCAGAGCTGAAGGAC...CTTCTGTACTTGGCGTTCCTGCATGGAAAGGAAAACAGGTATGGACGCCATTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | CCAATGGCGTCCATACCTGTTTTCCTTTCCATGCAGGAACGCCAAGTACAGAAGCGCCTCCTGGAGACTTaGTCTTTGCTCTGGCCATGC | + |
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Preference number: 4 (lower is better) Translates to: PMASIPVFLSMQERQVQKRLLET*SLLWPC Trigger: GCATGGCCAGAGCAAAGAGCAAGTCTCCAGGAGGCG...CTTCTGTACTTGGCGTTCCTGCATGGAAAGGAAAACAGGTATGGACGCCATTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CCA 90 bp | CCCCTGTCCCCAGCAAACCAGACTGAGTCCAGAAGTCCTCCAGTGTGGTGGGGGGCTGTTCCTTATGCTTaGTCTGACAACAGTGAAAAA | + |
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Preference number: 4 (lower is better) Translates to: PLSPANQTESRSPPVWWGAVPYA*SDNSEK Trigger: TTTTTCACTGTTGTCAGACCAAGCATAAGGAACAGC...CCCCCACCACACTGGAGGACTTCTGGACTCAGTCTGGTTTGCTGGGGACAGGGG 53% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR TCA 90 bp | CCATGCAGGAACGCCAAGTACAGAAGCCTTGCGCTCATGATGAACTTCAGTTCAGGGAGGACAATAGTCTaGTCCTGGCCCAAACTGTGG | + |
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Preference number: 4 (lower is better) Translates to: PCRNAKYRSLALMMNFSSGRTIV*SWPKLW Trigger: CCACAGTTTGGGCCAGGATCAGACTATTGTCCTCCC...TGAACTGAAGTTCATCATGAGCGCAAGGCTTCTGTACTTGGCGTTCCTGCATGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | CATATAAACAGAGGAAGGGAGGGAACTTTTGAGTTTCAAGCCTTGTTCAGCATGGGGGAGGGTGCAGAGTaGTTCTGCCGCCTCCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: HINRGREGTFEFQALFSMGEGAE*FCRLLE Trigger: CTCCAGGAGGCGGCAGAAGCACTCTGCACCCTCCCC...CATGCTGAACAAGGCTTGAAACTCAAAAGTTCCCTCCCTTCCTCTGTTTATATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CCA 90 bp | CCAATGGCGTCCATACCTGTTTTCCTTTCCATGCAGGAACGCCAAGTACAGAAGTTGGAGGCTAGCTCCTaGATTTCGGATGTGCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: PMASIPVFLSMQERQVQKLEASS*ISDVPP Trigger: TGGGGGCACATCCGAAATCCAGGAGCTAGCCTCCAA...CTTCTGTACTTGGCGTTCCTGCATGGAAAGGAAAACAGGTATGGACGCCATTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CCA 90 bp | CCATGCAGGAACGCCAAGTACAGAAGCCTTGCGCTCATGATGAACTTCAGTTCAACTTGCTCTTTGCTCTaGCCATGCTCCTGTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: PCRNAKYRSLALMMNFSSTCSLL*PCSCLW Trigger: CCACAGACAGGAGCATGGCCAGAGCAAAGAGCAAGT...TGAACTGAAGTTCATCATGAGCGCAAGGCTTCTGTACTTGGCGTTCCTGCATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | TCCTTTCCATGCAGGAACGCCAAGTACAGAAGCCTTGCGCTCATGATGAACTTCTTTCTGATATTGTCCTaGCGGCCTCTCCCTATCCAG | + |
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Preference number: 4 (lower is better) Translates to: SFPCRNAKYRSLALMMNFFLILS*RPLPIQ Trigger: CTGGATAGGGAGAGGCCGGCAGGACAATATCAGAAA...GAAGTTCATCATGAGCGCAAGGCTTCTGTACTTGGCGTTCCTGCATGGAAAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CCA 90 bp | TCCTTTCCATGCAGGAACGCCAAGTACAGAAGCCTTGCGCTCATGATGAACTTCGGATGTCCACACGTTTaGAGGCTAGCTCCTGGATTT | + |
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Preference number: 4 (lower is better) Translates to: SFPCRNAKYRSLALMMNFGCPHV*RLAPGF Trigger: AAATCCAGGAGCTAGCCTCCAAACGTGTGGACATCC...GAAGTTCATCATGAGCGCAAGGCTTCTGTACTTGGCGTTCCTGCATGGAAAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CCA 90 bp | CCAATGGCGTCCATACCTGTTTTCCTTTCCATGCAGGAACGCCAAGTACAGAAGAGGAAGCGACCTCGTTaGTTTTCCTTTAGGTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: PMASIPVFLSMQERQVQKRKRPR*FSFRSR Trigger: CCTGGACCTAAAGGAAAACCAACGAGGTCGCTTCCT...CTTCTGTACTTGGCGTTCCTGCATGGAAAGGAAAACAGGTATGGACGCCATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CCA 90 bp | ACGAGGCAGCGGATTGAAGTGATCCTTCCTCCTCCAAATTTAAACTCAGAGTTAGCTTCTGCCGCCTCCTaGAGACTTGCTCTTTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: TRQRIEVILPPPNLNSELASAAS*RLALCS Trigger: AGAGCAAAGAGCAAGTCTCCAGGAGGCGGCAGAAGC...TAACTCTGAGTTTAAATTTGGAGGAGGAAGGATCACTTCAATCCGCTGCCTCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR TCA 90 bp | TATGATGCCAATGGCGTCCATACCTGTTTTCCTTTCCATGCAGGAACGCCAAGTTTTTATTGTCCACTCTaGAAGAGGTCCCCTCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: YDANGVHTCFPFHAGTPSFYCPL*KRSPLG Trigger: TCCCAGAGGGGACCTCTTTCAGAGTGGACAATAAAA...ACTTGGCGTTCCTGCATGGAAAGGAAAACAGGTATGGACGCCATTGGCATCATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | CATATAAACAGAGGAAGGGAGGGAACTTTTGAGTTTCAAGCCTTGTTCAGCATGACAGTCCTTCAGCTCTaGTGCTACCGACAGGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: HINRGREGTFEFQALFSMTVLQL*CYRQGE Trigger: CTCTCCCTGTCGGTAGCAGCAGAGCTGAAGGACTGT...CATGCTGAACAAGGCTTGAAACTCAAAAGTTCCCTCCCTTCCTCTGTTTATATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | ACGAGGCAGCGGATTGAAGTGATCCTTCCTCCTCCAAATTTAAACTCAGAGTTACAAAGTAACCGATCATaGCAGTGCCCCGCATCATGG | + |
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Preference number: 4 (lower is better) Translates to: TRQRIEVILPPPNLNSELQSNRS*QCPASW Trigger: CCATGATGCGGGGCACTGGCATGATCGGTTACTTTG...TAACTCTGAGTTTAAATTTGGAGGAGGAAGGATCACTTCAATCCGCTGCCTCGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR TCA 90 bp | CGGATTGAAGTGATCCTTCCTCCTCCAAATTTAAACTCAGAGTTAGACAGTTACGGGCATAGTGCTCGATaGAGTCGCCTAGACAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: RIEVILPPPNLNSELDSYGHSAR*SRLDSP Trigger: AGGACTGTCTAGGCGACTTCATCGAGCACTATGCCC...GTAACTGTCTAACTCTGAGTTTAAATTTGGAGGAGGAAGGATCACTTCAATCCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | CATATAAACAGAGGAAGGGAGGGAACTTTTGAGTTTCAAGCCTTGTTCAGCATGTCTTTGCTCTGGCCATaGTCCTGTCTGTGGCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: HINRGREGTFEFQALFSMSLLWP*SCLWPF Trigger: GAAAGGCCACAGACAGGAGCATGGCCAGAGCAAAGA...CATGCTGAACAAGGCTTGAAACTCAAAAGTTCCCTCCCTTCCTCTGTTTATATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | TCTTATACGAGGCAGCGGATTGAAGTGATCCTTCCTCCTCCAAATTTAAACTCAAACCGATCATGCCAGTaGCCCGCATCATGGTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: SYTRQRIEVILPPPNLNSNRSCQ*PASWFV Trigger: GACAAACCATGATGCGGGGCACTGGCATGATCGGTT...TGAGTTTAAATTTGGAGGAGGAAGGATCACTTCAATCCGCTGCCTCGTATAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CCA 90 bp | CCATGCAGGAACGCCAAGTACAGAAGCCTTGCGCTCATGATGAACTTCAGTTCAAATCATACCTTGTGCTaGGAGGACAATAGTCTGATC | + |
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Preference number: 4 (lower is better) Translates to: PCRNAKYRSLALMMNFSSNHTLC*EDNSLI Trigger: GATCAGACTATTGTCCTCCCAGCACAAGGTATGATT...TGAACTGAAGTTCATCATGAGCGCAAGGCTTCTGTACTTGGCGTTCCTGCATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR TCA 90 bp | ACGAGGCAGCGGATTGAAGTGATCCTTCCTCCTCCAAATTTAAACTCAGAGTTATCAGTTTACTCTTTCTaGTATTGTCCTGCCGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: TRQRIEVILPPPNLNSELSVYSF*YCPAGL Trigger: GAGGCCGGCAGGACAATATCAGAAAGAGTAAACTGA...TAACTCTGAGTTTAAATTTGGAGGAGGAAGGATCACTTCAATCCGCTGCCTCGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | TGTCTCCTCCTCCCTCAATGCTGGCAAATAGCTATTTGGAAAATGAAAGGTTTATGGAGACTTGCTCTTTaGTCTGGCCATGCTCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: CLLLPQCWQIAIWKMKGLWRLAL*SGHAPV Trigger: GACAGGAGCATGGCCAGAGCAAAGAGCAAGTCTCCA...TAAACCTTTCATTTTCCAAATAGCTATTTGCCAGCATTGAGGGAGGAGGAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR GCA 90 bp | TACAGTACAATACAGTCACAACCCATGAGAACCTTTGAAATACAATACAGGACAGATAGAGTCTACTCTTaGTTAGGCCAGGGCCCCCTA | + |
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Preference number: 4 (lower is better) Translates to: YSTIQSQPMRTFEIQYRTDRVYS*LGQGPL Trigger: TAGGGGGCCCTGGCCTAAGCAAGAGTAGACTCTATC...TGTCCTGTATTGTATTTCAAAGGTTCTCATGGGTTGTGACTGTATTGTACTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR TCA 90 bp | TCATTTCTTTCATCGAATGCCTTTATTCTGCAGTGTAACATAAGGGATTTAGTCGTTTTGAGGACACTGTaGGGATGCTCTTCTGACCCC | + |
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Preference number: 4 (lower is better) Translates to: SFLSSNAFILQCNIRDLVVLRTL*GCSSDP Trigger: GGGGTCAGAAGAGCATCCTCACAGTGTCCTCAAAAC...GACTAAATCCCTTATGTTACACTGCAGAATAAAGGCATTCGATGAAAGAAATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS GCA 90 bp | GGGAGGGTGCAGAGTGCTTCTGCCGCCTCCTGGAGACTTGCTCTTTaGTCTGGCCATGCTCCTGTCTGTGGCCTTTCAGGCCCAGATGGG | + |
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Preference number: 5 (lower is better) Translates to: GRVQSASAASWRLAL*SGHAPVCGLSGPDG Trigger: CCCATCTGGGCCTGAAAGGCCACAGACAGGAGCATGGCCAGAGCAAAGAGCAAGTCTCCAGGAGGCGGCAGAAGCACTCTGCACCCTCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS TCA 90 bp | TCAGCTCTGCTGCTACCGACAGGGAGAGGGTCAGTTTACTCTTTCTaGTATTGTCCTGCCGGCCTCTCCCTATCCAGACTTCGGCTATCT | + |
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Preference number: 5 (lower is better) Translates to: SALLLPTGRGSVYSF*YCPAGLSLSRLRLS Trigger: AGATAGCCGAAGTCTGGATAGGGAGAGGCCGGCAGGACAATATCAGAAAGAGTAAACTGACCCTCTCCCTGTCGGTAGCAGCAGAGCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS GCA 90 bp | GCTACCGACAGGGAGAGGGTCAGTTTACTCTTTCTGATATTGTCCTaGCGGCCTCTCCCTATCCAGACTTCGGCTATCTTTAGGAAGCGG | + |
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Preference number: 5 (lower is better) Translates to: ATDRERVSLLFLILS*RPLPIQTSAIFRKR Trigger: CCGCTTCCTAAAGATAGCCGAAGTCTGGATAGGGAGAGGCCGGCAGGACAATATCAGAAAGAGTAAACTGACCCTCTCCCTGTCGGTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS-3UTR CAA 90 bp | TACAGTACAATACAGTCACAACCCATGAGAACCTTTGAAATACAATACAGGACAGGGCCCCCTACATTCTaGCCTCCGCGGCCACGGCCG | + |
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Preference number: 5 (lower is better) Translates to: YSTIQSQPMRTFEIQYRTGPPTF*PPRPRP Trigger: CGGCCGTGGCCGCGGAGGCAAGAATGTAGGGGGCCC...TGTCCTGTATTGTATTTCAAAGGTTCTCATGGGTTGTGACTGTATTGTACTGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS TCA 90 bp | GGTCCAGGTAGTATTTCCTATTGTCCCTCTCTATATAGTCCGTTTTaGGGACACTGTGAGGATGCTCTTCTGACCCCACTGACACCGGTG | + |
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Preference number: 5 (lower is better) Translates to: GPGSISYCPSLYSPF*GHCEDALLTPLTPV Trigger: CACCGGTGTCAGTGGGGTCAGAAGAGCATCCTCACAGTGTCCTCAAAACGGACTATATAGAGAGGGACAATAGGAAATACTACCTGGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS-3UTR CAA 90 bp | GAGGGAACTTTTGAGTTTCAAGCCTTGTTCAGCATGTGTGCAGTTAGCATCCACCTGGAGACTTGCTCTTaGCTCTGGCCATGCTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: EGTFEFQALFSMCAVSIHLETCS*LWPCSC Trigger: ACAGGAGCATGGCCAGAGCAAAGAGCAAGTCTCCAG...GTGGATGCTAACTGCACACATGCTGAACAAGGCTTGAAACTCAAAAGTTCCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS CCA 90 bp | ATCAAAGTAGAACCTTTTATTGTCCACTCTGAAAGAGGTCCCCTCTaGGAGTTCAAGTGGGTCGTCGTCTCCACACCTTCGTTCTTCTAT | + |
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Preference number: 5 (lower is better) Translates to: IKVEPFIVHSERGPL*EFKWVVVSTPSFFY Trigger: ATAGAAGAACGAAGGTGTGGAGACGACGACCCACTTGAACTCCCAGAGGGGACCTCTTTCAGAGTGGACAATAAAAGGTTCTACTTTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS-3UTR CAA 90 bp | TACAGTACAATACAGTCACAACCCATGAGAACCTTTGAAATACAATACAGGACACCGCCTCCTGGAGACTaGCTCTTTGCTCTGGCCATG | + |
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Preference number: 5 (lower is better) Translates to: YSTIQSQPMRTFEIQYRTPPPGD*LFALAM Trigger: CATGGCCAGAGCAAAGAGCAAGTCTCCAGGAGGCGG...TGTCCTGTATTGTATTTCAAAGGTTCTCATGGGTTGTGACTGTATTGTACTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CAA 90 bp | GAGGGAACTTTTGAGTTTCAAGCCTTGTTCAGCATGTGTGCAGTTAGCATCCACATTCCTCAACTGTCTTaGGAGTATCATAGGGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: EGTFEFQALFSMCAVSIHIPQLS*EYHRAV Trigger: AACAGCCCTATGATACTCCAAAGACAGTTGAGGAAT...GTGGATGCTAACTGCACACATGCTGAACAAGGCTTGAAACTCAAAAGTTCCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CAA 90 bp | GACTTCTTTTCATACAGTACAATACAGTCACAACCCATGAGAACCTTTGAAATATTACTCTTTCTGATATaGTCCTGCCGGCCTCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: DFFSYSTIQSQPMRTFEILLFLI*SCRPLP Trigger: AGGGAGAGGCCGGCAGGACAATATCAGAAAGAGTAA...TATTTCAAAGGTTCTCATGGGTTGTGACTGTATTGTACTGTATGAAAAGAAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS-3UTR CAA 90 bp | CGGATTGAAGTGATCCTTCCTCCTCCAAATTTAAACTCAGAGTTAGACAGTTACAAATTCAATCATACCTaGTGCTGGGAGGACAATAGT | + |
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Preference number: 5 (lower is better) Translates to: RIEVILPPPNLNSELDSYKFNHT*CWEDNS Trigger: ACTATTGTCCTCCCAGCACAAGGTATGATTGAATTT...GTAACTGTCTAACTCTGAGTTTAAATTTGGAGGAGGAAGGATCACTTCAATCCG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078058.5 |
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| CDS GCA 72 bp | AGTGAGAATGCTGGGCCTGGGGATAGAGTCTACTCTTaGTTAGGCCAGGGCCCCCTACATTCTTGCCTCCGC | + |
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Preference number: 6 (lower is better) Translates to: SENAGPGDRVYS*LGQGPLHSCLR Trigger: GCGGAGGCAAGAATGTAGGGGGCCCTGGCCTAAGCAAGAGTAGACTCTATCCCCAGGCCCAGCATTCTCACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS CAA 72 bp | ACCGACAGGGAGAGGGTCAGTTTACTCTTTCTGATATaGTCCTGCCGGCCTCTCCCTATCCAGACTTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: TDRERVSLLFLI*SCRPLPIQTSA Trigger: AGCCGAAGTCTGGATAGGGAGAGGCCGGCAGGACAATATCAGAAAGAGTAAACTGACCCTCTCCCTGTCGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS TCA 72 bp | CTGCTACCGACAGGGAGAGGGTCAGTTTACTCTTTCTaGTATTGTCCTGCCGGCCTCTCCCTATCCAGACTT | + |
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Preference number: 6 (lower is better) Translates to: LLPTGRGSVYSF*YCPAGLSLSRL Trigger: AAGTCTGGATAGGGAGAGGCCGGCAGGACAATATCAGAAAGAGTAAACTGACCCTCTCCCTGTCGGTAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS CCA 72 bp | GAACCTTTTATTGTCCACTCTGAAAGAGGTCCCCTCTaGGAGTTCAAGTGGGTCGTCGTCTCCACACCTTCG | + |
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Preference number: 6 (lower is better) Translates to: EPFIVHSERGPL*EFKWVVVSTPS Trigger: CGAAGGTGTGGAGACGACGACCCACTTGAACTCCCAGAGGGGACCTCTTTCAGAGTGGACAATAAAAGGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS CAA 90 bp | TCTGCTGCTACCGACAGGGAGAGGGTCAGTTTACTCTTTCTGATATaGTCCTGCCGGCCTCTCCCTATCCAGACTTCGGCTATCTTTAGG | + |
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Preference number: 6 (lower is better) Translates to: SAATDRERVSLLFLI*SCRPLPIQTSAIFR Trigger: CCTAAAGATAGCCGAAGTCTGGATAGGGAGAGGCCGGCAGGACAATATCAGAAAGAGTAAACTGACCCTCTCCCTGTCGGTAGCAGCAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS GCA 72 bp | AGGGAGAGGGTCAGTTTACTCTTTCTGATATTGTCCTaGCGGCCTCTCCCTATCCAGACTTCGGCTATCTTT | + |
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Preference number: 6 (lower is better) Translates to: RERVSLLFLILS*RPLPIQTSAIF Trigger: AAAGATAGCCGAAGTCTGGATAGGGAGAGGCCGGCAGGACAATATCAGAAAGAGTAAACTGACCCTCTCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS CAA 90 bp | GTCTTCAATCAGCTGAACCAAGGCATCACGAAATTCAATCATACCTaGTGCTGGGAGGACAATAGTCTGATCCTGGCCCAAACTGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: VFNQLNQGITKFNHT*CWEDNSLILAQTVA Trigger: GGCCACAGTTTGGGCCAGGATCAGACTATTGTCCTCCCAGCACAAGGTATGATTGAATTTCGTGATGCCTTGGTTCAGCTGATTGAAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS CAA 72 bp | CAGCTGAACCAAGGCATCACGAAATTCAATCATACCTaGTGCTGGGAGGACAATAGTCTGATCCTGGCCCAA | + |
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Preference number: 6 (lower is better) Translates to: QLNQGITKFNHT*CWEDNSLILAQ Trigger: TTGGGCCAGGATCAGACTATTGTCCTCCCAGCACAAGGTATGATTGAATTTCGTGATGCCTTGGTTCAGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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| CDS TCA 72 bp | AGTATTTCCTATTGTCCCTCTCTATATAGTCCGTTTTaGGGACACTGTGAGGATGCTCTTCTGACCCCACTG | + |
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Preference number: 6 (lower is better) Translates to: SISYCPSLYSPF*GHCEDALLTPL Trigger: CAGTGGGGTCAGAAGAGCATCCTCACAGTGTCCTCAAAACGGACTATATAGAGAGGGACAATAGGAAATACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000070340.6 ENSMUST00000078058.5 |
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