Pregenerated sensors for PUDP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048875Ensembl transcript IDs: ENSMUST00000056460.4, ENSMUST00000235550.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TGTGAGGATGTTAATAAGATGTCGAGTTGGTTTGGAAAAGAATTATaGAGTAAACACATGTACAGGCCACTGGGAATGTTAAGGCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: CEDVNKMSSWFGKEL*SKHMYRPLGMLRQL Trigger: AAGCTGCCTTAACATTCCCAGTGGCCTGTACATGTGTTTACTCAATAATTCTTTTCCAAACCAACTCGACATCTTATTAACATCCTCACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS-3UTR GCA 90 bp | AATGTTAAGGCAGCTTGTCAAGGGTGTGAAGTAGGTTCACGTGCAGAGGCGCTCCCCACAGTGGATGGCTaGCTCCACTCCATTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: NVKAACQGCEVGSRAEALPTVDG*LHSIWR Trigger: TCTCCAAATGGAGTGGAGGCAGCCATCCACTGTGGG...GAGCGCCTCTGCACGTGAACCTACTTCACACCCTTGACAAGCTGCCTTAACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS-3UTR TCA 90 bp | AATGTTAAGGCAGCTTGTCAAGGGTGTGAAGTAGGTTCACGTGCAGAGGCGCTCCAAACAGTTCAGGCTTaGAGTCGTGGAGGGAACTCA | + |
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Preference number: 4 (lower is better) Translates to: NVKAACQGCEVGSRAEALQTVQA*SRGGNS Trigger: TGAGTTCCCTCCACGACTTCAAGCCTGAACTGTTTG...GAGCGCCTCTGCACGTGAACCTACTTCACACCCTTGACAAGCTGCCTTAACATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS-3UTR CCA 90 bp | AATGTTAAGGCAGCTTGTCAAGGGTGTGAAGTAGGTTCACGTGCAGAGGCGCTCCAATTCCTCAGCTCCTaGCATGAATCCAGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: NVKAACQGCEVGSRAEALQFLSS*HESSCV Trigger: CACACAGCTGGATTCATGCCAGGAGCTGAGGAATTG...GAGCGCCTCTGCACGTGAACCTACTTCACACCCTTGACAAGCTGCCTTAACATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS-3UTR CCA 90 bp | AATGTTAAGGCAGCTTGTCAAGGGTGTGAAGTAGGTTCACGTGCAGAGGCGCTCCGGTGTTTCTTCAGGTaGTGGATCAATTCCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: NVKAACQGCEVGSRAEALRCFFR*WINSSA Trigger: AGCTGAGGAATTGATCCACCACCTGAAGAAACACCG...GAGCGCCTCTGCACGTGAACCTACTTCACACCCTTGACAAGCTGCCTTAACATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS-3UTR TCA 90 bp | AATGTTAAGGCAGCTTGTCAAGGGTGTGAAGTAGGTTCACGTGCAGAGGCGCTCTGGATATGGGTAAATTaGGGAACTCTACTATGGTCT | + |
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Preference number: 4 (lower is better) Translates to: NVKAACQGCEVGSRAEALWIWVN*GTLLWS Trigger: AGACCATAGTAGAGTTCCTCAATTTACCCATATCCA...GAGCGCCTCTGCACGTGAACCTACTTCACACCCTTGACAAGCTGCCTTAACATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS-3UTR TCA 90 bp | AATGTTAAGGCAGCTTGTCAAGGGTGTGAAGTAGGTTCACGTGCAGAGGCGCTCATCTGCAGCTTCTCCTaGCTTTCTTTCAATAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: NVKAACQGCEVGSRAEALICSFS*LSFNSS Trigger: AGAACTATTGAAAGAAAGTCAGGAGAAGCTGCAGAT...GAGCGCCTCTGCACGTGAACCTACTTCACACCCTTGACAAGCTGCCTTAACATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS-3UTR TCA 90 bp | CTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCATGCCTCAGCTCCTGGCATaGATCCAGCTGTGTGCAACA | + |
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Preference number: 4 (lower is better) Translates to: LSNVEQITEETEYIMEPMPQLLA*IQLCAT Trigger: TGTTGCACACAGCTGGATTCATGCCAGGAGCTGAGG...CATGGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR CCA 90 bp | CTACTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCTCAGGCTTGAAGTCGTaGAGGGAACTCAGCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: LLSNVEQITEETEYIMEPSGLKS*RELSTR Trigger: CCTGGTGCTGAGTTCCCTCCACGACTTCAAGCCTGA...GGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR TCA 90 bp | CTACTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCCAAACAGTTCAGGCTTaGAGTCGTGGAGGGAACTCA | + |
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Preference number: 4 (lower is better) Translates to: LLSNVEQITEETEYIMEPQTVQA*SRGGNS Trigger: TGAGTTCCCTCCACGACTTCAAGCCTGAACTGTTTG...GGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR GCA 90 bp | GACAAGAAAGGTTACAATTTGGATGATGTTGATTTCCTAATGTTTCCACTCAGCCCCACAGTGGATGGCTaGCTCCACTCCATTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: DKKGYNLDDVDFLMFPLSPTVDG*LHSIWR Trigger: TCTCCAAATGGAGTGGAGGCAGCCATCCACTGTGGG...GCTGAGTGGAAACATTAGGAAATCAACATCATCCAAATTGTAACCTTTCTTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS-3UTR CCA 90 bp | CTACTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCCAATTCCTCAGCTCCTaGCATGAATCCAGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: LLSNVEQITEETEYIMEPQFLSS*HESSCV Trigger: CACACAGCTGGATTCATGCCAGGAGCTGAGGAATTG...GGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR CCA 90 bp | GACAAGAAAGGTTACAATTTGGATGATGTTGATTTCCTAATGTTTCCACTCAGCTCAGGCTTGAAGTCGTaGAGGGAACTCAGCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: DKKGYNLDDVDFLMFPLSSGLKS*RELSTR Trigger: CCTGGTGCTGAGTTCCCTCCACGACTTCAAGCCTGA...GCTGAGTGGAAACATTAGGAAATCAACATCATCCAAATTGTAACCTTTCTTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS-3UTR GCA 90 bp | CTACTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCATGAATCCAGCTGTGTaGAACACCATCTGCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: LLSNVEQITEETEYIMEPMNPAV*NTICSF Trigger: GAAGCTGCAGATGGTGTTGCACACAGCTGGATTCAT...GGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAGTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR CCA 90 bp | CTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCATGCGGTGTTTCTTCAGGTaGTGGATCAATTCCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LSNVEQITEETEYIMEPMRCFFR*WINSSA Trigger: AGCTGAGGAATTGATCCACCACCTGAAGAAACACCG...CATGGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR GCA 90 bp | CTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCATGTGTCCATGCCTGGCTTaGCATTCTTTACTTCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: LSNVEQITEETEYIMEPMCPCLA*HSLLQD Trigger: ATCCTGAAGTAAAGAATGGCAAGCCAGGCATGGACA...CATGGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR TCA 90 bp | GACAAGAAAGGTTACAATTTGGATGATGTTGATTTCCTAATGTTTCCACTCAGCCCCAGAACGATGTGGTaGAATAGACCAAAGAATCCT | + |
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Preference number: 4 (lower is better) Translates to: DKKGYNLDDVDFLMFPLSPRTMW*NRPKNP Trigger: AGGATTCTTTGGTCTATTTCACCACATCGTTCTGGG...GCTGAGTGGAAACATTAGGAAATCAACATCATCCAAATTGTAACCTTTCTTGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS-3UTR GCA 90 bp | AATTCCAAAGGTGAAGCTGATAGTGACAAGAAAGGTTACAATTTGGATGATGTTATGAATCCAGCTGTGTaGAACACCATCTGCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: NSKGEADSDKKGYNLDDVMNPAV*NTICSF Trigger: GAAGCTGCAGATGGTGTTGCACACAGCTGGATTCAT...AACATCATCCAAATTGTAACCTTTCTTGTCACTATCAGCTTCACCTTTGGAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS-3UTR GCA 90 bp | GACAAGAAAGGTTACAATTTGGATGATGTTGATTTCCTAATGTTTCCACTCAGCTGTCCATGCCTGGCTTaGCATTCTTTACTTCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: DKKGYNLDDVDFLMFPLSCPCLA*HSLLQD Trigger: ATCCTGAAGTAAAGAATGGCAAGCCAGGCATGGACA...GCTGAGTGGAAACATTAGGAAATCAACATCATCCAAATTGTAACCTTTCTTGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS-3UTR CCA 90 bp | CTACTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCAAATATGTCCATGCCTaGCTTGCCATTCTTTACTTC | + |
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Preference number: 4 (lower is better) Translates to: LLSNVEQITEETEYIMEPKYVHA*LAILYF Trigger: GAAGTAAAGAATGGCAAGCCAGGCATGGACATATTT...GGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAGTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR CCA 90 bp | GACAAGAAAGGTTACAATTTGGATGATGTTGATTTCCTAATGTTTCCACTCAGCTGCCTCCACTCCATTTaGAGAATCTTCAAAGACGAG | + |
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Preference number: 4 (lower is better) Translates to: DKKGYNLDDVDFLMFPLSCLHSI*RIFKDE Trigger: CTCGTCTTTGAAGATTCTCCAAATGGAGTGGAGGCA...GCTGAGTGGAAACATTAGGAAATCAACATCATCCAAATTGTAACCTTTCTTGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS-3UTR GCA 90 bp | CTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCATGTTAGAAATATGTCCATaGCTGGCTTGCCATTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: LSNVEQITEETEYIMEPMLEICP*LACHSL Trigger: TAAAGAATGGCAAGCCAGGCATGGACATATTTCTAA...CATGGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR TCA 90 bp | GACAAGAAAGGTTACAATTTGGATGATGTTGATTTCCTAATGTTTCCACTCAGCTGGATATGGGTAAATTaGGGAACTCTACTATGGTCT | + |
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Preference number: 4 (lower is better) Translates to: DKKGYNLDDVDFLMFPLSWIWVN*GTLLWS Trigger: AGACCATAGTAGAGTTCCTCAATTTACCCATATCCA...GCTGAGTGGAAACATTAGGAAATCAACATCATCCAAATTGTAACCTTTCTTGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS-3UTR TCA 90 bp | GACAAGAAAGGTTACAATTTGGATGATGTTGATTTCCTAATGTTTCCACTCAGCATCTGCAGCTTCTCCTaGCTTTCTTTCAATAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: DKKGYNLDDVDFLMFPLSICSFS*LSFNSS Trigger: AGAACTATTGAAAGAAAGTCAGGAGAAGCTGCAGAT...GCTGAGTGGAAACATTAGGAAATCAACATCATCCAAATTGTAACCTTTCTTGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| 3UTR CAA 72 bp | AAAGGTGAAGCTGATAGTGACAAGAAAGGTTACAATTaGGATGATGTTGATTTCCTAATGTTTCCACTCAGC | + |
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Preference number: 4 (lower is better) Translates to: KGEADSDKKGYN*DDVDFLMFPLS Trigger: GCTGAGTGGAAACATTAGGAAATCAACATCATCCAAATTGTAACCTTTCTTGTCACTATCAGCTTCACCTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| 3UTR CAA 72 bp | GTTAATAAGATGTCGAGTTGGTTTGGAAAAGAATTATaGAGTAAACACATGTACAGGCCACTGGGAATGTTA | + |
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Preference number: 4 (lower is better) Translates to: VNKMSSWFGKEL*SKHMYRPLGML Trigger: TAACATTCCCAGTGGCCTGTACATGTGTTTACTCAATAATTCTTTTCCAAACCAACTCGACATCTTATTAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS TCA 90 bp | AGCACCAGGGTGGCTTTTCGTGTTAGGTCTGCGCTCAGGTTTTCATaGGGTACCATGACGACCTGCATCCCACAGTGGATGGCTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: STRVAFRVRSALRFS*GTMTTCIPQWMAAS Trigger: GGAGGCAGCCATCCACTGTGGGATGCAGGTCGTCATGGTACCTCATGAAAACCTGAGCGCAGACCTAACACGAAAAGCCACCCTGGTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS TCA 90 bp | AGCGGTGTTTCTTCAGGTGGTGGATCAATTCCTCAGCTCCTGGCATaGATCCAGCTGTGTGCAACACCATCTGCAGCTTCTCCTGACTTT | + |
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Preference number: 5 (lower is better) Translates to: SGVSSGGGSIPQLLA*IQLCATPSAASPDF Trigger: AAAGTCAGGAGAAGCTGCAGATGGTGTTGCACACAGCTGGATTCATGCCAGGAGCTGAGGAATTGATCCACCACCTGAAGAAACACCGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS-3UTR CAA 90 bp | CTACTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCAGACGAGGCAGTCTTTaGGATCAGGGGGAGGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: LLSNVEQITEETEYIMEPRRGSL*DQGEER Trigger: TCTCTCCTCCCCCTGATCCAAAAGACTGCCTCGTCT...GGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAGTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS TCA 90 bp | CCTGGCATGAATCCAGCTGTGTGCAACACCATCTGCAGCTTCTCCTaGCTTTCTTTCAATAGTTCTTCTTTGGATATGGGTAAATTGAGG | + |
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Preference number: 5 (lower is better) Translates to: PGMNPAVCNTICSFS*LSFNSSSLDMGKLR Trigger: CCTCAATTTACCCATATCCAAAGAAGAACTATTGAAAGAAAGTCAGGAGAAGCTGCAGATGGTGTTGCACACAGCTGGATTCATGCCAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS-3UTR CAA 90 bp | CTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCATGATGTCCATGCCTGGCTaGCCATTCTTTACTTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: LSNVEQITEETEYIMEPMMSMPG*PFFTSG Trigger: TCCTGAAGTAAAGAATGGCAAGCCAGGCATGGACAT...CATGGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR CAA 90 bp | AATTCCAAAGGTGAAGCTGATAGTGACAAGAAAGGTTACAATTTGGATGATGTTAGACGAGGCAGTCTTTaGGATCAGGGGGAGGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: NSKGEADSDKKGYNLDDVRRGSL*DQGEER Trigger: TCTCTCCTCCCCCTGATCCAAAAGACTGCCTCGTCT...AACATCATCCAAATTGTAACCTTTCTTGTCACTATCAGCTTCACCTTTGGAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS-3UTR CAA 90 bp | CTACTGTCAAATGTAGAGCAAATCACAGAGGAGACTGAATACATAATGGAACCCCTGCCTCCACTCCATTaGGAGAATCTTCAAAGACGA | + |
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Preference number: 5 (lower is better) Translates to: LLSNVEQITEETEYIMEPLPPLH*ENLQRR Trigger: TCGTCTTTGAAGATTCTCCAAATGGAGTGGAGGCAG...GGGTTCCATTATGTATTCAGTCTCCTCTGTGATTTGCTCTACATTTGACAGTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056460.4 |
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| CDS-3UTR CAA 90 bp | AAAGAATTATTGAGTAAACACATGTACAGGCCACTGGGAATGTTAAGGCAGCTTATGTCCATGCCTGGCTaGCCATTCTTTACTTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: KELLSKHMYRPLGMLRQLMSMPG*PFFTSG Trigger: TCCTGAAGTAAAGAATGGCAAGCCAGGCATGGACAT...AAGCTGCCTTAACATTCCCAGTGGCCTGTACATGTGTTTACTCAATAATTCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235550.2 |
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| CDS CCA 72 bp | GCCAGGGCAAAGGGTAAGCGGTGTTTCTTCAGGTGGTaGATCAATTCCTCAGCTCCTGGCATGAATCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: ARAKGKRCFFRW*INSSAPGMNPA Trigger: AGCTGGATTCATGCCAGGAGCTGAGGAATTGATCCACCACCTGAAGAAACACCGCTTACCCTTTGCCCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS CCA 72 bp | GTGGCCAGGGCAAAGGGTAAGCGGTGTTTCTTCAGGTaGTGGATCAATTCCTCAGCTCCTGGCATGAATCCA | + |
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Preference number: 6 (lower is better) Translates to: VARAKGKRCFFR*WINSSAPGMNP Trigger: TGGATTCATGCCAGGAGCTGAGGAATTGATCCACCACCTGAAGAAACACCGCTTACCCTTTGCCCTGGCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS TCA 72 bp | GTGGCTTTTCGTGTTAGGTCTGCGCTCAGGTTTTCATaGGGTACCATGACGACCTGCATCCCACAGTGGATG | + |
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Preference number: 6 (lower is better) Translates to: VAFRVRSALRFS*GTMTTCIPQWM Trigger: CATCCACTGTGGGATGCAGGTCGTCATGGTACCTCATGAAAACCTGAGCGCAGACCTAACACGAAAAGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS CCA 72 bp | AGACCAAAGAATCCTGTGTGTCTACTGGTCTTTGTTTaGAAGGTAACGGTCTCGGAGCTGGTGGCCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: RPKNPVCLLVFV*KVTVSELVARA Trigger: TGCCCTGGCCACCAGCTCCGAGACCGTTACCTTCCAAACAAAGACCAGTAGACACACAGGATTCTTTGGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS CCA 72 bp | AATAAGTCCGTCCAGGTCAAATATCAGGTGTGTAACTaGTCGAAATTGGGGCACAGGAACTGCCGCCGCCAT | + |
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Preference number: 6 (lower is better) Translates to: NKSVQVKYQVCN*SKLGHRNCRRH Trigger: ATGGCGGCGGCAGTTCCTGTGCCCCAATTTCGACCAGTTACACACCTGATATTTGACCTGGACGGACTTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS CCA 72 bp | GTGTTTCTTCAGGTGGTGGATCAATTCCTCAGCTCCTaGCATGAATCCAGCTGTGTGCAACACCATCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: VFLQVVDQFLSS*HESSCVQHHLQ Trigger: CTGCAGATGGTGTTGCACACAGCTGGATTCATGCCAGGAGCTGAGGAATTGATCCACCACCTGAAGAAACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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| CDS TCA 72 bp | TTTCTTTCAATAGTTCTTCTTTGGATATGGGTAAATTaGGGAACTCTACTATGGTCTGTGCGGTTTCTAGAG | + |
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Preference number: 6 (lower is better) Translates to: FLSIVLLWIWVN*GTLLWSVRFLE Trigger: CTCTAGAAACCGCACAGACCATAGTAGAGTTCCTCAATTTACCCATATCCAAAGAAGAACTATTGAAAGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056460.4 ENSMUST00000235550.2 |
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