Pregenerated sensors for PTX3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027832Ensembl transcript IDs: ENSMUST00000029421.6
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGAGCCCTCTCTCAAGCCTTCCCTTCAACTGTGTATTCAGTATTTTaGCAAGATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTC | + |
|
Preference number: 1 (lower is better) Translates to: GALSQAFPSTVYSVF*QDKQRQSQVSPSFV Trigger: GACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATCTTGGCAAAATACTGAATACACAGTTGAAGGGAAGGCTTGAGAGAGGGCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| 3UTR-3UTR TCA 90 bp | AAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGTTTTCAGACTTTTCCAACTGGCATATTTAAAATGTaGGTCTCCTTTGGCTTCAAG | + |
|
Preference number: 2 (lower is better) Translates to: KSLLHSSITHRSFQTFPTGIFKM*VSFGFK Trigger: CTTGAAGCCAAAGGAGACTCACATTTTAAATATGCC...AGTTGGAAAAGTCTGAAAACTTCGGTGCGTAATAGACGAATGAAGGAGAGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| 3UTR-3UTR CCA 90 bp | GATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGAATGTGAGTCTCCTTTaGCTTCAAGTAGATTTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: DKQRQSQVSPSFVYYAPKNVSLL*LQVDFH Trigger: GTGAAAATCTACTTGAAGCCAAAGGAGACTCACATT...CTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| 3UTR-3UTR CAA 90 bp | GATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGAAATGTGAGTCTCCTTaGGCTTCAAGTAGATTTTCA | + |
|
Preference number: 3 (lower is better) Translates to: DKQRQSQVSPSFVYYAPKKCESP*ASSRFS Trigger: TGAAAATCTACTTGAAGCCAAAGGAGACTCACATTT...CTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR TCA 90 bp | GATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGCCAGGCGCGCCAGCCTaGGGCTCGCGTCACGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: DKQRQSQVSPSFVYYAPKPGAPA*GSRHGS Trigger: AGAGCCGTGACGCGAGCCTCAGGCTGGCGCGCCTGG...CTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR TCA 90 bp | CGTCCCTCTGTTCAGAGTCCAGTCCTGTTTAGTTATCTGAGGGTTTATCTGACACATGCTCCCCTGCTCTaGACTCCAGGTGCCACACAG | + |
|
Preference number: 4 (lower is better) Translates to: RPSVQSPVLFSYLRVYLTHAPLL*TPGATQ Trigger: CTGTGTGGCACCTGGAGTTCAGAGCAGGGGAGCATG...TGTCAGATAAACCCTCAGATAACTAAACAGGACTGGACTCTGAACAGAGGGACG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR GCA 90 bp | TTTTGCCAAGATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACCACCAGCCTGGCGTCTaGGGGGCCACCGGCTGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: FCQDKQRQSQVSPSFVYYHQPGV*GATGCA Trigger: TGCGCAGCCGGTGGCCCCGCAGACGCCAGGCTGGTG...GTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATCTTGGCAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR GCA 90 bp | CGTCCCTCTGTTCAGAGTCCAGTCCTGTTTAGTTATCTGAGGGTTTATCTGACAAGGGACATGCTCCCCTaGTCTGAACTCCAGGTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RPSVQSPVLFSYLRVYLTRDMLP*SELQVP Trigger: TGGCACCTGGAGTTCAGAGCAGGGGAGCATGTCCCT...TGTCAGATAAACCCTCAGATAACTAAACAGGACTGGACTCTGAACAGAGGGACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CCA 90 bp | TTTTGCCAAGATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACCCTGCGGGCAGCCAGTaGCGGGCGACCCAGCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: FCQDKQRQSQVSPSFVYYPAGSQ*RATQLC Trigger: GCAGAGCTGGGTCGCCCGCCACTGGCTGCCCGCAGG...GTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATCTTGGCAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR TCA 90 bp | AAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGTTTTCAGGCTCCTCCGTGCGCCTaGATCTCTGTGACTCCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: KDNLKSLLHSSITHRSFQAPPCA*ISVTPH Trigger: GTGGGGAGTCACAGAGATTCAGGCGCACGGAGGAGC...CTGAAAACTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR GCA 90 bp | TTTTGCCAAGATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCGTCACGGCTCTCCTaGAGCAGCGGCTCCAGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: FCQDKQRQSQVSPSFVYYASRLS*SSGSSA Trigger: GGCGCTGGAGCCGCTGCTGCAGGAGAGCCGTGACGC...GTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATCTTGGCAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR TCA 90 bp | CGTCCCTCTGTTCAGAGTCCAGTCCTGTTTAGTTATCTGAGGGTTTATCTGACAGTATCTCCTCCTCGCTaGGAACCCGATCCCAGATAT | + |
|
Preference number: 4 (lower is better) Translates to: RPSVQSPVLFSYLRVYLTVSPPR*EPDPRY Trigger: ATATCTGGGATCGGGTTCTCAGCGAGGAGGAGATAC...TGTCAGATAAACCCTCAGATAACTAAACAGGACTGGACTCTGAACAGAGGGACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR GCA 90 bp | AAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGTTTTCAGACTTTTCCAACTGCTCTGAACTCCAGGTaGCACACAGGTGGGACCACC | + |
|
Preference number: 4 (lower is better) Translates to: KSLLHSSITHRSFQTFPTALNSR*HTGGTT Trigger: GGTGGTCCCACCTGTGTGGCACCTGGAGTTCAGAGC...AGTTGGAAAAGTCTGAAAACTTCGGTGCGTAATAGACGAATGAAGGAGAGACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CCA 90 bp | CATTCGTCTATTACGCACCGAAGTTTTCAGACTTTTCCAACTGGCATATTTAAACACTCCGAGTGCTCCTaGCGGCAGTCGCATGGCGTG | + |
|
Preference number: 4 (lower is better) Translates to: HSSITHRSFQTFPTGIFKHSECS*RQSHGV Trigger: CACGCCATGCGACTGCCGCCAGGAGCACTCGGAGTG...TTTAAATATGCCAGTTGGAAAAGTCTGAAAACTTCGGTGCGTAATAGACGAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CCA 90 bp | CCAGAAAGAATGAACAATGGGCAACAGAGCTTGTTTTGTTATTCTTCCAATATACAGGTGCCACACAGGTaGGACCACCTCCCCAGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: PERMNNGQQSLFCYSSNIQVPHR*DHLPRD Trigger: GTCCCTGGGGAGGTGGTCCCACCTGTGTGGCACCTG...TATATTGGAAGAATAACAAAACAAGCTCTGTTGCCCATTGTTCATTCTTTCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR GCA 90 bp | GATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGATGCCCTCCCGCATCTaGGAGTTCTCCAGCATGATG | + |
|
Preference number: 4 (lower is better) Translates to: DKQRQSQVSPSFVYYAPKMPSRI*EFSSMM Trigger: CATCATGCTGGAGAACTCGCAGATGCGGGAGGGCAT...CTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR GCA 90 bp | CCAGAAAGAATGAACAATGGGCAACAGAGCTTGTTTTGTTATTCTTCCAATATACACCAGCTCCCCGTTTaGCCACAGGGACATGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: PERMNNGQQSLFCYSSNIHQLPV*PQGHAP Trigger: GGGAGCATGTCCCTGTGGGCAAACGGGGAGCTGGTG...TATATTGGAAGAATAACAAAACAAGCTCTGTTGCCCATTGTTCATTCTTTCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CCA 90 bp | GATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGGCGTGGGGTCCTCGGTaGGATGAAGTCCATTGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: DKQRQSQVSPSFVYYAPKAWGPR*DEVHCL Trigger: TAGACAATGGACTTCATCCCACCGAGGACCCCACGC...CTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CCA 90 bp | TTTTGCCAAGATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGGAGGACGTCGTCGGTaGCCTGCAACAGCATGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: FCQDKQRQSQVSPSFVYYGGRRR*PATACP Trigger: AGGGCATGCTGTTGCAGGCCACCGACGACGTCCTCC...GTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATCTTGGCAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR TCA 90 bp | GATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGCCAAATTCACATACATaGGCTCGTAGTCATCCGAGG | + |
|
Preference number: 4 (lower is better) Translates to: DKQRQSQVSPSFVYYAPKPNSHT*ARSHPR Trigger: CCTCGGATGACTACGAGCTCATGTATGTGAATTTGG...CTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR GCA 90 bp | CATTCGTCTATTACGCACCGAAGTTTTCAGACTTTTCCAACTGGCATATTTAAAGGTCTCAGCCACTACTaGAGACCAGAGAGCACAAAG | + |
|
Preference number: 4 (lower is better) Translates to: HSSITHRSFQTFPTGIFKGLSHY*RPESTK Trigger: CTTTGTGCTCTCTGGTCTGCAGTAGTGGCTGAGACC...TTTAAATATGCCAGTTGGAAAAGTCTGAAAACTTCGGTGCGTAATAGACGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR TCA 90 bp | TTTTGCCAAGATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGGGTCCTCGGTGGGATaGAGTCCATTGTCTATTTCG | + |
|
Preference number: 4 (lower is better) Translates to: FCQDKQRQSQVSPSFVYYGSSVG*SPLSIS Trigger: CGAAATAGACAATGGACTTCATCCCACCGAGGACCC...GTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATCTTGGCAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR GCA 90 bp | AAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGTTTTCAGAGGGGTTCCACTTTGTaGCATAAGAAAACAGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: KDNLKSLLHSSITHRSFQRGSTL*HKKTGW Trigger: CCATCCTGTTTTCTTATGGCACAAAGTGGAACCCCT...CTGAAAACTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CCA 90 bp | GATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGAGATTCAAGCTTCATTaGTCTCACAGGATGCACGCT | + |
|
Preference number: 4 (lower is better) Translates to: DKQRQSQVSPSFVYYAPKRFKLH*SHRMHA Trigger: AGCGTGCATCCTGTGAGACCAATGAAGCTTGAATCT...CTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR GCA 90 bp | AAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGTTTTCAGACTTTTCCAACTATTGGTCTCACAGGATaGACGCTTCCAAAAATCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KSLLHSSITHRSFQTFPTIGLTG*TLPKIF Trigger: GAAGATTTTTGGAAGCGTGCATCCTGTGAGACCAAT...AGTTGGAAAAGTCTGAAAACTTCGGTGCGTAATAGACGAATGAAGGAGAGACTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CCA 90 bp | AAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGTTTTCAGCAACCATTCTTTTCTTaGCCAATCTGTAGGAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: KDNLKSLLHSSITHRSFQQPFFS*PICRSP Trigger: TGGACTCCTACAGATTGGCCAAGAAAAGAATGGTTG...CTGAAAACTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CCA 90 bp | AAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGTTTTCAGACTTTTCCAACTCTTCTTCGAACGCATTaGGAAGAAAATTGCTGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: KSLLHSSITHRSFQTFPTLLRTH*EENCCF Trigger: GAAACAGCAATTTTCTTCCCAATGCGTTCGAAGAAG...AGTTGGAAAAGTCTGAAAACTTCGGTGCGTAATAGACGAATGAAGGAGAGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 90 bp | GCGTCCTCCAGGCGCGCCAGCCTGAGGCTCGCGTCACGGCTCTCCTaGAGCAGCGGCTCCAGCGCCCGCACCAGCCTGGCGTCTGCGGGG | + |
|
Preference number: 5 (lower is better) Translates to: ASSRRASLRLASRLS*SSGSSARTSLASAG Trigger: CCCCGCAGACGCCAGGCTGGTGCGGGCGCTGGAGCCGCTGCTGCAGGAGAGCCGTGACGCGAGCCTCAGGCTGGCGCGCCTGGAGGACGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CCA 90 bp | GCTCTGCCCGCAGCCGCTGCAGCTCTCCACGGAGGACGTCGTCGGTaGCCTGCAACAGCATGCCCTCCCGCATCTGCGAGTTCTCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: ALPAAAAALHGGRRR*PATACPPASASSPA Trigger: TGCTGGAGAACTCGCAGATGCGGGAGGGCATGCTGTTGCAGGCCACCGACGACGTCCTCCGTGGAGAGCTGCAGCGGCTGCGGGCAGAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 90 bp | GCCCGCAGCCGCTGCAGCTCTCCACGGAGGACGTCGTCGGTGGCCTaGAACAGCATGCCCTCCCGCATCTGCGAGTTCTCCAGCATGATG | + |
|
Preference number: 5 (lower is better) Translates to: ARSRCSSPRRTSSVA*NSMPSRICEFSSMM Trigger: CATCATGCTGGAGAACTCGCAGATGCGGGAGGGCATGCTGTTGCAGGCCACCGACGACGTCCTCCGTGGAGAGCTGCAGCGGCTGCGGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CCA 90 bp | CACAGGGACATGCTCCCCTGCTCTGAACTCCAGGTGCCACACAGGTaGGACCACCTCCCCAGGGACACCACAGTGTCTGCAGCCAGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: HRDMLPCSELQVPHR*DHLPRDTTVSAASL Trigger: CAAGCTGGCTGCAGACACTGTGGTGTCCCTGGGGAGGTGGTCCCACCTGTGTGGCACCTGGAGTTCAGAGCAGGGGAGCATGTCCCTGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 90 bp | CGGAGGACGTCGTCGGTGGCCTGCAACAGCATGCCCTCCCGCATCTaGGAGTTCTCCAGCATGATGAACAGCTTGTCCCACTCCGAGTGC | + |
|
Preference number: 5 (lower is better) Translates to: RRTSSVACNSMPSRI*EFSSMMNSLSHSEC Trigger: GCACTCGGAGTGGGACAAGCTGTTCATCATGCTGGAGAACTCGCAGATGCGGGAGGGCATGCTGTTGCAGGCCACCGACGACGTCCTCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CAA 90 bp | CATTCGTCTATTACGCACCGAAGTTTTCAGACTTTTCCAACTGGCATATTTAAAGTGTCTGCAGCCAGCTaGTTCTCCTTTCCACCCACC | + |
|
Preference number: 5 (lower is better) Translates to: HSSITHRSFQTFPTGIFKVSAAS*FSFPPT Trigger: GGTGGGTGGAAAGGAGAACAAGCTGGCTGCAGACAC...TTTAAATATGCCAGTTGGAAAAGTCTGAAAACTTCGGTGCGTAATAGACGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CAA 90 bp | CCAGAAAGAATGAACAATGGGCAACAGAGCTTGTTTTGTTATTCTTCCAATATAAGCATGATGAACAGCTaGTCCCACTCCGAGTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: PERMNNGQQSLFCYSSNISMMNS*SHSECS Trigger: GGAGCACTCGGAGTGGGACAAGCTGTTCATCATGCT...TATATTGGAAGAATAACAAAACAAGCTCTGTTGCCCATTGTTCATTCTTTCTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CAA 90 bp | AGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGTTTTCAGACCATAGGGGTTCCACTTaGTGCCATAAGAAAACAGGA | + |
|
Preference number: 5 (lower is better) Translates to: RQSQVSPSFVYYAPKFSDHRGST*CHKKTG Trigger: TCCTGTTTTCTTATGGCACAAAGTGGAACCCCTATG...GTCTGAAAACTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CAA 90 bp | GATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGTCTTCTTCGAACGCATaGGGAAGAAAATTGCTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: DKQRQSQVSPSFVYYAPKSSSNA*GRKLLF Trigger: AAACAGCAATTTTCTTCCCAATGCGTTCGAAGAAGA...CTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CAA 90 bp | TTTTGCCAAGATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACACCCGATCCCAGATATaGAAGCCTGTGATTCTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: FCQDKQRQSQVSPSFVYYTRSQI*KPVILP Trigger: TGGAAGAATCACAGGCTTCAATATCTGGGATCGGGT...GTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATCTTGGCAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CAA 90 bp | GATAAACAAAGACAATCTCAAGTCTCTCCTTCATTCGTCTATTACGCACCGAAGCCATTGTCTATTTCGTaGTCCAAATTCACATACATG | + |
|
Preference number: 5 (lower is better) Translates to: DKQRQSQVSPSFVYYAPKPLSIS*SKFTYM Trigger: CATGTATGTGAATTTGGACAACGAAATAGACAATGG...CTTCGGTGCGTAATAGACGAATGAAGGAGAGACTTGAGATTGTCTTTGTTTATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CAA 90 bp | CATTCGTCTATTACGCACCGAAGTTTTCAGACTTTTCCAACTGGCATATTTAAAAATACATCTGTGGCTTaGACCCAAATGCAAGTACTA | + |
|
Preference number: 5 (lower is better) Translates to: HSSITHRSFQTFPTGIFKNTSVA*TQMQVL Trigger: TAGTACTTGCATTTGGGTCAAAGCCACAGATGTATT...TTTAAATATGCCAGTTGGAAAAGTCTGAAAACTTCGGTGCGTAATAGACGAATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS-3UTR CAA 90 bp | CATTCGTCTATTACGCACCGAAGTTTTCAGACTTTTCCAACTGGCATATTTAAAGAAAACAGGATGGTTTaGTTTAATACATCTGTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: HSSITHRSFQTFPTGIFKENRMV*FNTSVA Trigger: AGCCACAGATGTATTAAACAAAACCATCCTGTTTTC...TTTAAATATGCCAGTTGGAAAAGTCTGAAAACTTCGGTGCGTAATAGACGAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | CAGCAGCGGCTCCAGCGCCCGCACCAGCCTGGCGTCTaGGGGGCCACCGGCTGCGCACGGCCTCGCCATGCC | + |
|
Preference number: 6 (lower is better) Translates to: QQRLQRPHQPGV*GATGCARPRHA Trigger: GGCATGGCGAGGCCGTGCGCAGCCGGTGGCCCCGCAGACGCCAGGCTGGTGCGGGCGCTGGAGCCGCTGCTG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | AGGCGCGCCAGCCTGAGGCTCGCGTCACGGCTCTCCTaGAGCAGCGGCTCCAGCGCCCGCACCAGCCTGGCG | + |
|
Preference number: 6 (lower is better) Translates to: RRASLRLASRLS*SSGSSARTSLA Trigger: CGCCAGGCTGGTGCGGGCGCTGGAGCCGCTGCTGCAGGAGAGCCGTGACGCGAGCCTCAGGCTGGCGCGCCT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | CAACCTGCGGGCAGCCAGTGGCGGGCGACCCAGCTCTaGACGGCGCTCAGGTCGGCGCGCGTCCGCCGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: QPAGSQWRATQL*TALRSARVRRS Trigger: ACTGCGGCGGACGCGCGCCGACCTGAGCGCCGTGCAGAGCTGGGTCGCCCGCCACTGGCTGCCCGCAGGTTG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CCA 72 bp | GCAGCCGCTGCAGCTCTCCACGGAGGACGTCGTCGGTaGCCTGCAACAGCATGCCCTCCCGCATCTGCGAGT | + |
|
Preference number: 6 (lower is better) Translates to: AAAAALHGGRRR*PATACPPASAS Trigger: ACTCGCAGATGCGGGAGGGCATGCTGTTGCAGGCCACCGACGACGTCCTCCGTGGAGAGCTGCAGCGGCTGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | CGCTGCAGCTCTCCACGGAGGACGTCGTCGGTGGCCTaGAACAGCATGCCCTCCCGCATCTGCGAGTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: RCSSPRRTSSVA*NSMPSRICEFS Trigger: GGAGAACTCGCAGATGCGGGAGGGCATGCTGTTGCAGGCCACCGACGACGTCCTCCGTGGAGAGCTGCAGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS TCA 72 bp | CTCCCCGTTTGCCCACAGGGACATGCTCCCCTGCTCTaGACTCCAGGTGCCACACAGGTGGGACCACCTCCC | + |
|
Preference number: 6 (lower is better) Translates to: LPVCPQGHAPLL*TPGATQVGPPP Trigger: GGGAGGTGGTCCCACCTGTGTGGCACCTGGAGTTCAGAGCAGGGGAGCATGTCCCTGTGGGCAAACGGGGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | CCCACAGGGACATGCTCCCCTGCTCTGAACTCCAGGTaGCACACAGGTGGGACCACCTCCCCAGGGACACCA | + |
|
Preference number: 6 (lower is better) Translates to: PTGTCSPALNSR*HTGGTTSPGTP Trigger: TGGTGTCCCTGGGGAGGTGGTCCCACCTGTGTGGCACCTGGAGTTCAGAGCAGGGGAGCATGTCCCTGTGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | ACCAGCTCCCCGTTTGCCCACAGGGACATGCTCCCCTaGTCTGAACTCCAGGTGCCACACAGGTGGGACCAC | + |
|
Preference number: 6 (lower is better) Translates to: TSSPFAHRDMLP*SELQVPHRWDH Trigger: GTGGTCCCACCTGTGTGGCACCTGGAGTTCAGAGCAGGGGAGCATGTCCCTGTGGGCAAACGGGGAGCTGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CCA 72 bp | AGCATGATGAACAGCTTGTCCCACTCCGAGTGCTCCTaGCGGCAGTCGCATGGCGTGGGGTCCTCGGTGGGA | + |
|
Preference number: 6 (lower is better) Translates to: SMMNSLSHSECS*RQSHGVGSSVG Trigger: TCCCACCGAGGACCCCACGCCATGCGACTGCCGCCAGGAGCACTCGGAGTGGGACAAGCTGTTCATCATGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CAA 90 bp | AGCATGCCCTCCCGCATCTGCGAGTTCTCCAGCATGATGAACAGCTaGTCCCACTCCGAGTGCTCCTGGCGGCAGTCGCATGGCGTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: SMPSRICEFSSMMNS*SHSECSWRQSHGVG Trigger: CCCCACGCCATGCGACTGCCGCCAGGAGCACTCGGAGTGGGACAAGCTGTTCATCATGCTGGAGAACTCGCAGATGCGGGAGGGCATGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | TTCTCCAGCATGATGAACAGCTTGTCCCACTCCGAGTaGTCCTGGCGGCAGTCGCATGGCGTGGGGTCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: FSSMMNSLSHSE*SWRQSHGVGSS Trigger: CGAGGACCCCACGCCATGCGACTGCCGCCAGGAGCACTCGGAGTGGGACAAGCTGTTCATCATGCTGGAGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CCA 72 bp | AAGAAAATTGCTGTTTCACAACCTGCGGGCAGCCAGTaGCGGGCGACCCAGCTCTGCACGGCGCTCAGGTCG | + |
|
Preference number: 6 (lower is better) Translates to: KKIAVSQPAGSQ*RATQLCTALRS Trigger: CGACCTGAGCGCCGTGCAGAGCTGGGTCGCCCGCCACTGGCTGCCCGCAGGTTGTGAAACAGCAATTTTCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CCA 72 bp | ATGCTCCCCTGCTCTGAACTCCAGGTGCCACACAGGTaGGACCACCTCCCCAGGGACACCACAGTGTCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: MLPCSELQVPHR*DHLPRDTTVSA Trigger: TGCAGACACTGTGGTGTCCCTGGGGAGGTGGTCCCACCTGTGTGGCACCTGGAGTTCAGAGCAGGGGAGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS TCA 72 bp | TCTGTGACTCCCCACCCGACGACATTTCCCCGGATGTaGCAGGATTCGACTCCTCCACTGGCCCGTATCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SVTPHPTTFPRM*QDSTPPLARIS Trigger: GGAGATACGGGCCAGTGGAGGAGTCGAATCCTGTCACATCCGGGGAAATGTCGTCGGGTGGGGAGTCACAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | TCGTCGGTGGCCTGCAACAGCATGCCCTCCCGCATCTaGGAGTTCTCCAGCATGATGAACAGCTTGTCCCAC | + |
|
Preference number: 6 (lower is better) Translates to: SSVACNSMPSRI*EFSSMMNSLSH Trigger: GTGGGACAAGCTGTTCATCATGCTGGAGAACTCGCAGATGCGGGAGGGCATGCTGTTGCAGGCCACCGACGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CAA 72 bp | TCCCGCATCTGCGAGTTCTCCAGCATGATGAACAGCTaGTCCCACTCCGAGTGCTCCTGGCGGCAGTCGCAT | + |
|
Preference number: 6 (lower is better) Translates to: SRICEFSSMMNS*SHSECSWRQSH Trigger: ATGCGACTGCCGCCAGGAGCACTCGGAGTGGGACAAGCTGTTCATCATGCTGGAGAACTCGCAGATGCGGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | CATGAGCTCGTAGTCATCCGAGGTCTCAGCCACTACTaGAGACCAGAGAGCACAAAGCAGGATCGCAGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: HELVVIRGLSHY*RPESTKQDRRE Trigger: CTCCCTGCGATCCTGCTTTGTGCTCTCTGGTCTGCAGTAGTGGCTGAGACCTCGGATGACTACGAGCTCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS TCA 72 bp | CCTTTCCACCCACCACCAACACTAGGGACTGGGAACTaGGGTACAGCTGAATCTCATAGGGGTTCCACTTTG | + |
|
Preference number: 6 (lower is better) Translates to: PFHPPPTLGTGN*GTAESHRGSTL Trigger: CAAAGTGGAACCCCTATGAGATTCAGCTGTACCTCAGTTCCCAGTCCCTAGTGTTGGTGGTGGGTGGAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CCA 72 bp | TCAAAGCCCCCACCTACACAGCAACCATTCTTTTCTTaGCCAATCTGTAGGAGTCCACCCTCAGGAACAGAG | + |
|
Preference number: 6 (lower is better) Translates to: SKPPPTQQPFFS*PICRSPPSGTE Trigger: CTCTGTTCCTGAGGGTGGACTCCTACAGATTGGCCAAGAAAAGAATGGTTGCTGTGTAGGTGGGGGCTTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CAA 90 bp | TTGGTCTCACAGGATGCACGCTTCCAAAAATCTTCTTCGAACGCATaGGGAAGAAAATTGCTGTTTCACAACCTGCGGGCAGCCAGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: LVSQDARFQKSSSNA*GRKLLFHNLRAASG Trigger: GCCACTGGCTGCCCGCAGGTTGTGAAACAGCAATTTTCTTCCCAATGCGTTCGAAGAAGATTTTTGGAAGCGTGCATCCTGTGAGACCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CAA 90 bp | CCACTGGCCCGTATCTCCTCCTCGCTGAGAACCCGATCCCAGATATaGAAGCCTGTGATTCTTCCAGAAAATGCTAATGATTCGTCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: PLARISSSLRTRSQI*KPVILPENANDSSK Trigger: CTTTGACGAATCATTAGCATTTTCTGGAAGAATCACAGGCTTCAATATCTGGGATCGGGTTCTCAGCGAGGAGGAGATACGGGCCAGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CAA 72 bp | CAGGATGCACGCTTCCAAAAATCTTCTTCGAACGCATaGGGAAGAAAATTGCTGTTTCACAACCTGCGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: QDARFQKSSSNA*GRKLLFHNLRA Trigger: TGCCCGCAGGTTGTGAAACAGCAATTTTCTTCCCAATGCGTTCGAAGAAGATTTTTGGAAGCGTGCATCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS TCA 72 bp | GTCCATTGTCTATTTCGTTGTCCAAATTCACATACATaGGCTCGTAGTCATCCGAGGTCTCAGCCACTACTG | + |
|
Preference number: 6 (lower is better) Translates to: VHCLFRCPNSHT*ARSHPRSQPLL Trigger: CAGTAGTGGCTGAGACCTCGGATGACTACGAGCTCATGTATGTGAATTTGGACAACGAAATAGACAATGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS CAA 72 bp | CGTATCTCCTCCTCGCTGAGAACCCGATCCCAGATATaGAAGCCTGTGATTCTTCCAGAAAATGCTAATGAT | + |
|
Preference number: 6 (lower is better) Translates to: RISSSLRTRSQI*KPVILPENAND Trigger: ATCATTAGCATTTTCTGGAAGAATCACAGGCTTCAATATCTGGGATCGGGTTCTCAGCGAGGAGGAGATACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||
| CDS GCA 72 bp | GTACTAAAAGATTCAAGCTTCATTGGTCTCACAGGATaGACGCTTCCAAAAATCTTCTTCGAACGCATTGGG | + |
|
Preference number: 6 (lower is better) Translates to: VLKDSSFIGLTG*TLPKIFFERIG Trigger: CCCAATGCGTTCGAAGAAGATTTTTGGAAGCGTGCATCCTGTGAGACCAATGAAGCTTGAATCTTTTAGTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029421.6 |
||