Pregenerated sensors for PTTG1IP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079666Ensembl transcript IDs: ENSMUST00000115447.2, ENSMUST00000128151.8, ENSMUST00000156282.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCACCTGGAGCATCCCAGTTGTAGACGGGAACTTGTCCATGTCTTaGATAAAGGGCCATATGCTGTTGCATGTAGAAGTAATAGGCGAG | + |
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Preference number: 1 (lower is better) Translates to: VTWSIPVVDGNLSMS*IKGHMLLHVEVIGE Trigger: CTCGCCTATTACTTCTACATGCAACAGCATATGGCCCTTTATGCAAGACATGGACAAGTTCCCGTCTACAACTGGGATGCTCCAGGTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR TCA 90 bp | GGAAAGTCTCTTGTTTACCATGTCATATGCCAGGTTTATTGGTCATaGGCCTTCAGGAATGGACTTCCATCTGCCTTCCATCTTGCCACA | + |
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Preference number: 1 (lower is better) Translates to: GKSLVYHVICQVYWS*AFRNGLPSAFHLAT Trigger: TGTGGCAAGATGGAAGGCAGATGGAAGTCCATTCCTGAAGGCTCATGACCAATAAACCTGGCATATGACATGGTAAACAAGAGACTTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR GCA 90 bp | ATCTCGAGTACACACTGGACATGTTTCCTTTTGAGCACATTCTTCTaGCTCGTTTTGAGGAAAGTCTCTTGTTTACCATGTCATATGCCA | + |
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Preference number: 1 (lower is better) Translates to: ISSTHWTCFLLSTFF*LVLRKVSCLPCHMP Trigger: TGGCATATGACATGGTAAACAAGAGACTTTCCTCAAAACGAGGCAGAAGAATGTGCTCAAAAGGAAACATGTCCAGTGTGTACTCGAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 90 bp | TACAGGTCACCAGTCACCTGGAGCATCCCAGTTGTAGACGGGAACTaGTCCATGTCTTGCATAAAGGGCCATATGCTGTTGCATGTAGAA | + |
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Preference number: 2 (lower is better) Translates to: YRSPVTWSIPVVDGN*SMSCIKGHMLLHVE Trigger: TTCTACATGCAACAGCATATGGCCCTTTATGCAAGACATGGACAAGTTCCCGTCTACAACTGGGATGCTCCAGGTGACTGGTGACCTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR-3UTR GCA 90 bp | CAGGAATGGACTTCCATCTGCCTTCCATCTTGCCACAGATGGGGGTTACGGATGTTTGTGGAATCTTGTTaGCCACTCTTTCAAGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: QEWTSICLPSCHRWGLRMFVESC*PLFQVL Trigger: CAGGACTTGAAAGAGTGGGCAACAAGATTCCACAAA...CATCCGTAACCCCCATCTGTGGCAAGATGGAAGGCAGATGGAAGTCCATTCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGGCCATATGCTGTTGCATGTAGAAGTAATAGGCGAGGCAATACCAGAGGAAATCTGCCTTCCATCTTaGCACAGATGGGGGTTACGG | + |
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Preference number: 2 (lower is better) Translates to: KGHMLLHVEVIGEAIPEEICLPS*HRWGLR Trigger: CCGTAACCCCCATCTGTGGCAAGATGGAAGGCAGAT...TTCCTCTGGTATTGCCTCGCCTATTACTTCTACATGCAACAGCATATGGCCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 90 bp | AGTCACCTGGAGCATCCCAGTTGTAGACGGGAACTTGTCCATGTCTaGCATAAAGGGCCATATGCTGTTGCATGTAGAAGTAATAGGCGA | + |
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Preference number: 2 (lower is better) Translates to: SHLEHPSCRRELVHV*HKGPYAVACRSNRR Trigger: TCGCCTATTACTTCTACATGCAACAGCATATGGCCCTTTATGCAAGACATGGACAAGTTCCCGTCTACAACTGGGATGCTCCAGGTGACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 90 bp | AGGCGCTTTACCCGCTTCACATCTTCCAGGTCCCAGTCTAGGTCCTaGGGTTTATGTCTTCTGATTGGTTCCTTCCATAAAATCACATTT | + |
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Preference number: 2 (lower is better) Translates to: RRFTRFTSSRSQSRS*GLCLLIGSFHKITF Trigger: AAATGTGATTTTATGGAAGGAACCAATCAGAAGACATAAACCCAAGGACCTAGACTGGGACCTGGAAGATGTGAAGCGGGTAAAGCGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 90 bp | GTTTTGAGGAAAGTCTCTTGTTTACCATGTCATATGCCAGGTTTATaGGTCATGAGCCTTCAGGAATGGACTTCCATCTGCCTTCCATCT | + |
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Preference number: 2 (lower is better) Translates to: VLRKVSCLPCHMPGL*VMSLQEWTSICLPS Trigger: AGATGGAAGGCAGATGGAAGTCCATTCCTGAAGGCTCATGACCAATAAACCTGGCATATGACATGGTAAACAAGAGACTTTCCTCAAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 90 bp | TTTCCTTTTGAGCACATTCTTCTGCCTCGTTTTGAGGAAAGTCTCTaGTTTACCATGTCATATGCCAGGTTTATTGGTCATGAGCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: FPFEHILLPRFEESL*FTMSYARFIGHEPS Trigger: TGAAGGCTCATGACCAATAAACCTGGCATATGACATGGTAAACAAGAGACTTTCCTCAAAACGAGGCAGAAGAATGTGCTCAAAAGGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 90 bp | ACACACTGGACATGTTTCCTTTTGAGCACATTCTTCTGCCTCGTTTaGAGGAAAGTCTCTTGTTTACCATGTCATATGCCAGGTTTATTG | + |
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Preference number: 2 (lower is better) Translates to: THWTCFLLSTFFCLV*RKVSCLPCHMPGLL Trigger: CAATAAACCTGGCATATGACATGGTAAACAAGAGACTTTCCTCAAAACGAGGCAGAAGAATGTGCTCAAAAGGAAACATGTCCAGTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR GCA 72 bp | TTATTGGTCATGAGCCTTCAGGAATGGACTTCCATCTaGCTTCCATCTTGCCACAGATGGGGGTTACGGATG | + |
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Preference number: 3 (lower is better) Translates to: LLVMSLQEWTSI*LPSCHRWGLRM Trigger: CATCCGTAACCCCCATCTGTGGCAAGATGGAAGGCAGATGGAAGTCCATTCCTGAAGGCTCATGACCAATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CCA 72 bp | CATATGCCAGGTTTATTGGTCATGAGCCTTCAGGAATaGACTTCCATCTGCCTTCCATCTTGCCACAGATGG | + |
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Preference number: 3 (lower is better) Translates to: HMPGLLVMSLQE*TSICLPSCHRW Trigger: CCATCTGTGGCAAGATGGAAGGCAGATGGAAGTCCATTCCTGAAGGCTCATGACCAATAAACCTGGCATATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR-3UTR CAA 90 bp | TGTCATATGCCAGGTTTATTGGTCATGAGCCTTCAGGAATGGACTTCCATCTGCTCCCAGTCTAGGTCCTaGGGTTTATGTCTTCTGATT | + |
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Preference number: 3 (lower is better) Translates to: CHMPGLLVMSLQEWTSICSQSRS*GLCLLI Trigger: AATCAGAAGACATAAACCCAAGGACCTAGACTGGGA...GCAGATGGAAGTCCATTCCTGAAGGCTCATGACCAATAAACCTGGCATATGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR GCA 72 bp | AGCATCCCAGTTGTAGACGGGAACTTGTCCATGTCTTaGATAAAGGGCCATATGCTGTTGCATGTAGAAGTA | + |
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Preference number: 3 (lower is better) Translates to: SIPVVDGNLSMS*IKGHMLLHVEV Trigger: TACTTCTACATGCAACAGCATATGGCCCTTTATGCAAGACATGGACAAGTTCCCGTCTACAACTGGGATGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR TCA 72 bp | CTTGTTTACCATGTCATATGCCAGGTTTATTGGTCATaGGCCTTCAGGAATGGACTTCCATCTGCCTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: LVYHVICQVYWS*AFRNGLPSAFH Trigger: ATGGAAGGCAGATGGAAGTCCATTCCTGAAGGCTCATGACCAATAAACCTGGCATATGACATGGTAAACAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR-3UTR CAA 90 bp | AAAGGGCCATATGCTGTTGCATGTAGAAGTAATAGGCGAGGCAATACCAGAGGATTCTTCTGCCTCGTTTaGAGGAAAGTCTCTTGTTTA | + |
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Preference number: 3 (lower is better) Translates to: KGPYAVACRSNRRGNTRGFFCLV*RKVSCL Trigger: TAAACAAGAGACTTTCCTCAAAACGAGGCAGAAGAA...TCCTCTGGTATTGCCTCGCCTATTACTTCTACATGCAACAGCATATGGCCCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR-3UTR CAA 90 bp | CATAAAGGGCCATATGCTGTTGCATGTAGAAGTAATAGGCGAGGCAATACCAGAAGATTTTGTGGAATCTaGTTGCCCACTCTTTCAAGT | + |
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Preference number: 3 (lower is better) Translates to: HKGPYAVACRSNRRGNTRRFCGI*LPTLSS Trigger: ACTTGAAAGAGTGGGCAACAAGATTCCACAAAATCT...TCTGGTATTGCCTCGCCTATTACTTCTACATGCAACAGCATATGGCCCTTTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR-3UTR CAA 90 bp | TTCCTTTTGAGCACATTCTTCTGCCTCGTTTTGAGGAAAGTCTCTTGTTTACCATTTTGTGGAATCTTGTaGCCCACTCTTTCAAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: FLLSTFFCLVLRKVSCLPFCGIL*PTLSSP Trigger: AGGACTTGAAAGAGTGGGCAACAAGATTCCACAAAA...TGGTAAACAAGAGACTTTCCTCAAAACGAGGCAGAAGAATGTGCTCAAAAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| CDS-3UTR CCA 90 bp | AAGGGCCATATGCTGTTGCATGTAGAAGTAATAGGCGAGGCAATACCAGAGGAAACGGGCAGGAGGATGTaGCTCCATGCCCTCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: KGHMLLHVEVIGEAIPEETGRRM*LHALSQ Trigger: CTGGCTGAGGGCATGGAGCCACATCCTCCTGCCCGT...TTCCTCTGGTATTGCCTCGCCTATTACTTCTACATGCAACAGCATATGGCCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| CDS-3UTR CCA 90 bp | TCAATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCCAAACGGGCAGGAGGATGTaGCTCCATGCCCTCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: SIILKVFVGIIKITVGAQTGRRM*LHALSQ Trigger: CTGGCTGAGGGCATGGAGCCACATCCTCCTGCCCGT...TTGGGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGATTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115447.2 ENSMUST00000156282.2 |
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| CDS-3UTR CCA 90 bp | ATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCCAAGGCAGGTCACCAGTCACCTaGAGCATCCCAGTTGTAGAC | + |
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Preference number: 4 (lower is better) Translates to: IILKVFVGIIKITVGAQGRSPVT*SIPVVD Trigger: GTCTACAACTGGGATGCTCCAGGTGACTGGTGACCT...GCCTTGGGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128151.8 |
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| 3UTR CAA 72 bp | ACCCGCTTCACATCTTCCAGGTCCCAGTCTAGGTCCTaGGGTTTATGTCTTCTGATTGGTTCCTTCCATAAA | + |
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Preference number: 4 (lower is better) Translates to: TRFTSSRSQSRS*GLCLLIGSFHK Trigger: TTTATGGAAGGAACCAATCAGAAGACATAAACCCAAGGACCTAGACTGGGACCTGGAAGATGTGAAGCGGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 72 bp | GAGCATCCCAGTTGTAGACGGGAACTTGTCCATGTCTaGCATAAAGGGCCATATGCTGTTGCATGTAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: EHPSCRRELVHV*HKGPYAVACRS Trigger: ACTTCTACATGCAACAGCATATGGCCCTTTATGCAAGACATGGACAAGTTCCCGTCTACAACTGGGATGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 72 bp | AACTTGTCCATGTCTTGCATAAAGGGCCATATGCTGTaGCATGTAGAAGTAATAGGCGAGGCAATACCAGAG | + |
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Preference number: 4 (lower is better) Translates to: NLSMSCIKGHML*HVEVIGEAIPE Trigger: CTCTGGTATTGCCTCGCCTATTACTTCTACATGCAACAGCATATGGCCCTTTATGCAAGACATGGACAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 72 bp | TCTCTTATCTCGAGTACACACTGGACATGTTTCCTTTaGAGCACATTCTTCTGCCTCGTTTTGAGGAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: SLISSTHWTCFL*STFFCLVLRKV Trigger: GACTTTCCTCAAAACGAGGCAGAAGAATGTGCTCAAAAGGAAACATGTCCAGTGTGTACTCGAGATAAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 72 bp | TCTAGAGCATCACTTTATCCTAGATTTTGTGGAATCTaGTTGCCCACTCTTTCAAGTCCTGTGCCAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: SRASLYPRFCGI*LPTLSSPVPVS Trigger: AGAAACTGGCACAGGACTTGAAAGAGTGGGCAACAAGATTCCACAAAATCTAGGATAAAGTGATGCTCTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| 3UTR CAA 72 bp | GAGCACATTCTTCTGCCTCGTTTTGAGGAAAGTCTCTaGTTTACCATGTCATATGCCAGGTTTATTGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: EHILLPRFEESL*FTMSYARFIGH Trigger: ATGACCAATAAACCTGGCATATGACATGGTAAACAAGAGACTTTCCTCAAAACGAGGCAGAAGAATGTGCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| CDS-3UTR TCA 90 bp | TCAATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCCAAGGACATGTTTCCTTTTaGGCACATTCCTTTTCAACG | + |
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Preference number: 4 (lower is better) Translates to: SIILKVFVGIIKITVGAQGHVSF*AHSFST Trigger: CGTTGAAAAGGAATGTGCTCAAAAGGAAACATGTCC...TTGGGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115447.2 |
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| CDS-3UTR GCA 90 bp | TCAATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCCAAAACTTGTCCATGTCTTaGATAAAGGGCCATATGCTG | + |
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Preference number: 4 (lower is better) Translates to: SIILKVFVGIIKITVGAQNLSMS*IKGHML Trigger: CAGCATATGGCCCTTTATGCAAGACATGGACAAGTT...TTGGGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115447.2 |
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| CDS-3UTR GCA 90 bp | TGTTCAATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCAACTTGTCCATGTCTTaGATAAAGGGCCATATGCCA | + |
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Preference number: 4 (lower is better) Translates to: CSIILKVFVGIIKITVGANLSMS*IKGHMP Trigger: TGGCATATGGCCCTTTATGCAAGACATGGACAAGTT...GGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGATTGAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128151.8 |
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| CDS-3UTR CCA 90 bp | TCAATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCCAAAAGTTGAAAATCAGCTaGATGAGAGCTACAGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: SIILKVFVGIIKITVGAQKLKIS*MRATER Trigger: CCTCTCTGTAGCTCTCATCCAGCTGATTTTCAACTT...TTGGGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000115447.2 ENSMUST00000156282.2 |
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| CDS-3UTR CCA 90 bp | TCAATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCCAAATCTCGAGTACACACTaGACATGTTTCCTTTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SIILKVFVGIIKITVGAQISSTH*TCFLLS Trigger: GCTCAAAAGGAAACATGTCCAGTGTGTACTCGAGAT...TTGGGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGATTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115447.2 |
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| CDS-3UTR CCA 90 bp | ATGCTAGTGCTAATATTACAATCAGTATCAGCATCACGATTCCAAACAGGTCAAAAGTTGAAAATCAGCTaGATGAGAGCTACAGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: MLVLILQSVSASRFQTGQKLKIS*MRATER Trigger: CCTCTCTGTAGCTCTCATCCAGCTGATTTTCAACTT...TTGACCTGTTTGGAATCGTGATGCTGATACTGATTGTAATATTAGCACTAGCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| CDS-3UTR CAA 90 bp | GGAATGGACTTCCATCTGCCTTCCATCTTGCCACAGATGGGGGTTACGGATGTATTATGGTCAGATAAGTaGAAAATCAGCTGGATGAGA | + |
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Preference number: 5 (lower is better) Translates to: GMDFHLPSILPQMGVTDVLWSDK*KISWMR Trigger: TCTCATCCAGCTGATTTTCAACTTATCTGACCATAA...TACATCCGTAACCCCCATCTGTGGCAAGATGGAAGGCAGATGGAAGTCCATTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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| CDS-3UTR CAA 90 bp | ATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCCAAGGCAAGGGCCATATGCTGTaGCATGTAGAAGTAATAGGC | + |
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Preference number: 5 (lower is better) Translates to: IILKVFVGIIKITVGAQGKGHML*HVEVIG Trigger: GCCTATTACTTCTACATGCAACAGCATATGGCCCTT...GCCTTGGGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115447.2 |
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| CDS-3UTR CAA 90 bp | ATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCCAAGGCTTATGGTCAGATAAGTaGAAAATCAGCTGGATGAGA | + |
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Preference number: 5 (lower is better) Translates to: IILKVFVGIIKITVGAQGLWSDK*KISWMR Trigger: TCTCATCCAGCTGATTTTCAACTTATCTGACCATAA...GCCTTGGGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115447.2 ENSMUST00000156282.2 |
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| CDS-3UTR CAA 90 bp | TGTTCAATCATTCTCAAAGTGTTTGTAGGCATCATTAAAATCACAGTGGGAGCCTGGACATGTTTCCTTTaGAGCACATTCCTTTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: CSIILKVFVGIIKITVGAWTCFL*STFLFN Trigger: GTTGAAAAGGAATGTGCTCAAAAGGAAACATGTCCA...GGCTCCCACTGTGATTTTAATGATGCCTACAAACACTTTGAGAATGATTGAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115447.2 |
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| CDS CAA 72 bp | CCAGTCACCTGGAGCATCCCAGTTGTAGACGGGAACTaGTCCATGTCTTGCATAAAGGGCCATATGCCATTA | + |
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Preference number: 6 (lower is better) Translates to: PVTWSIPVVDGN*SMSCIKGHMPL Trigger: TAATGGCATATGGCCCTTTATGCAAGACATGGACAAGTTCCCGTCTACAACTGGGATGCTCCAGGTGACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128151.8 |
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| CDS CAA 72 bp | GAGCATCCCAGTTGTAGACGGGAACTTGTCCATGTCTaGCATAAAGGGCCATATGCCATTACAGTTTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: EHPSCRRELVHV*HKGPYAITVCP Trigger: TGGGCAAACTGTAATGGCATATGGCCCTTTATGCAAGACATGGACAAGTTCCCGTCTACAACTGGGATGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128151.8 |
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| CDS CAA 72 bp | TCCAGCAAATCTCATCTTCTTCCTTTTCAACGTATTTaGCTTCGATTTTCCGCTTCCAGTGATGGTGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: SSKSHLLPFQRI*LRFSASSDGGF Trigger: AAACCCACCATCACTGGAAGCGGAAAATCGAAGCAAAATACGTTGAAAAGGAAGAAGATGAGATTTGCTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156282.2 |
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