RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032067

Ensembl transcript IDs: ENSMUST00000034570.7, ENSMUST00000214873.2, ENSMUST00000215416.2

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGAGAGGACTGGAATGCACTTCAGAAGAGTCTATGCTTCCCGTGTaGGGCCCTGGTGTCAATCCTCAATCCTTCTCTACCTTCTCACCA +
Preference number: 1 (lower is better)
Translates to: LRGLECTSEESMLPV*GPGVNPQSFSTFSP
Trigger: TGGTGAGAAGGTAGAGAAGGATTGAGGATTGACACCAGGGCCTCACACGGGAAGCATAGACTCTTCTGAAGTGCATTCCAGTCCTCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR CCA 90 bp ACTGGAATGCACTTCAGAAGAGTCTATGCTTCCCGTGTGAGGCCCTaGTGTCAATCCTCAATCCTTCTCTACCTTCTCACCAAAACCACA +
Preference number: 1 (lower is better)
Translates to: TGMHFRRVYASRVRP*CQSSILLYLLTKTT
Trigger: TGTGGTTTTGGTGAGAAGGTAGAGAAGGATTGAGGATTGACACCAGGGCCTCACACGGGAAGCATAGACTCTTCTGAAGTGCATTCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR CCA 90 bp GAACAGAACATGGAGACACAAGCATGTGGTGACTGCTGCGAACTCTaGAAGGACAAAGCCTTTTTCAAGTGTGAAAAGAAATGTGCCTGT +
Preference number: 1 (lower is better)
Translates to: EQNMETQACGDCCEL*KDKAFFKCEKKCAC
Trigger: ACAGGCACATTTCTTTTCACACTTGAAAAAGGCTTTGTCCTTCCAGAGTTCGCAGCAGTCACCACATGCTTGTGTCTCCATGTTCTGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR CCA 90 bp GCATCAGATCCCTTTATAGATGGTTGTGAGCCATCATGTGGTTTCTaGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAGTGTACTTA +
Preference number: 1 (lower is better)
Translates to: ASDPFIDGCEPSCGF*ELNSGPLEEQSVYL
Trigger: TAAGTACACTGACTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATGATGGCTCACAACCATCTATAAAGGGATCTGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR-3UTR GCA 90 bp CACTTCAGAAGAGTCTATGCTTCCCGTGTGAGGCCCTGGTGTCAATCCTCAATCGCATGTGGTGACTGCTaGGAACTCTGGAAGGACAAA +
Preference number: 2 (lower is better)
Translates to: HFRRVYASRVRPWCQSSIACGDC*ELWKDK
Trigger: TTTGTCCTTCCAGAGTTCGCAGCAGTCACCACATGC...GATTGAGGATTGACACCAGGGCCTCACACGGGAAGCATAGACTCTTCTGAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR-3UTR CCA 90 bp CACTTCAGAAGAGTCTATGCTTCCCGTGTGAGGCCCTGGTGTCAATCCTCAATCGACTGCTGCGAACTCTaGAAGGACAAAGCCTTTTTC +
Preference number: 2 (lower is better)
Translates to: HFRRVYASRVRPWCQSSIDCCEL*KDKAFF
Trigger: GAAAAAGGCTTTGTCCTTCCAGAGTTCGCAGCAGTC...GATTGAGGATTGACACCAGGGCCTCACACGGGAAGCATAGACTCTTCTGAAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR CAA 90 bp GATCCCTTTATAGATGGTTGTGAGCCATCATGTGGTTTCTGGGAATaGAACTCAGGACCTCTGGAAGAACAGTCAGTGTACTTAACGGCT +
Preference number: 2 (lower is better)
Translates to: DPFIDGCEPSCGFWE*NSGPLEEQSVYLTA
Trigger: AGCCGTTAAGTACACTGACTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATGATGGCTCACAACCATCTATAAAGGGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR-3UTR TCA 90 bp AATACATCTAAATACAGGCCTTACATTACTTTAATGCTCGGGTACTCTAGAACAAGCCTTTTTCAAGTGTaGAAAGAAATGTGCCTGTCT +
Preference number: 2 (lower is better)
Translates to: NTSKYRPYITLMLGYSRTSLFQV*KEMCLS
Trigger: AGACAGGCACATTTCTTTTCACACTTGAAAAAGGCT...TGTTCTAGAGTACCCGAGCATTAAAGTAATGTAAGGCCTGTATTTAGATGTATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR CCA 72 bp CACTTCAGAAGAGTCTATGCTTCCCGTGTGAGGCCCTaGTGTCAATCCTCAATCCTTCTCTACCTTCTCACC +
Preference number: 3 (lower is better)
Translates to: HFRRVYASRVRP*CQSSILLYLLT
Trigger: GGTGAGAAGGTAGAGAAGGATTGAGGATTGACACCAGGGCCTCACACGGGAAGCATAGACTCTTCTGAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR TCA 72 bp CCAGAAGAGGGCATCAGATCCCTTTATAGATGGTTGTaGGCCATCATGTGGTTTCTGGGAATTGAACTCAGG +
Preference number: 3 (lower is better)
Translates to: PEEGIRSLYRWL*AIMWFLGIELR
Trigger: CCTGAGTTCAATTCCCAGAAACCACATGATGGCTCACAACCATCTATAAAGGGATCTGATGCCCTCTTCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR GCA 72 bp CTAGAACAGAACATGGAGACACAAGCATGTGGTGACTaGTGCGAACTCTGGAAGGACAAAGCCTTTTTCAAG +
Preference number: 3 (lower is better)
Translates to: LEQNMETQACGD*CELWKDKAFFK
Trigger: CTTGAAAAAGGCTTTGTCCTTCCAGAGTTCGCAGCAGTCACCACATGCTTGTGTCTCCATGTTCTGTTCTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR CCA 72 bp CCCTTTATAGATGGTTGTGAGCCATCATGTGGTTTCTaGGAATTGAACTCAGGACCTCTGGAAGAACAGTCA +
Preference number: 3 (lower is better)
Translates to: PFIDGCEPSCGF*ELNSGPLEEQS
Trigger: TGACTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATGATGGCTCACAACCATCTATAAAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR TCA 72 bp AGGACCTCTGGAAGAACAGTCAGTGTACTTAACGGCTaGGCCATCTCTCCAGCCCAAGATGAAATAATTTTA +
Preference number: 3 (lower is better)
Translates to: RTSGRTVSVLNG*AISPAQDEIIL
Trigger: TAAAATTATTTCATCTTGGGCTGGAGAGATGGCTCAGCCGTTAAGTACACTGACTGTTCTTCCAGAGGTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR TCA 72 bp TCTCACCAAAACCACATGCAGGATACACTGAAAGTTTaGTTCGTAAATACATCTAAATACAGGCCTTACATT +
Preference number: 3 (lower is better)
Translates to: SHQNHMQDTLKV*FVNTSKYRPYI
Trigger: AATGTAAGGCCTGTATTTAGATGTATTTACGAATCAAACTTTCAGTGTATCCTGCATGTGGTTTTGGTGAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS-3UTR CCA 90 bp CACTTCAGAAGAGTCTATGCTTCCCGTGTGAGGCCCTGGTGTCAATCCTCAATCGGGCTGTGCAGCCGGTaGCTCGCGCTGAAGGACACG +
Preference number: 4 (lower is better)
Translates to: HFRRVYASRVRPWCQSSIGLCSR*LALKDT
Trigger: CGTGTCCTTCAGCGCGAGCCACCGGCTGCACAGCCC...GATTGAGGATTGACACCAGGGCCTCACACGGGAAGCATAGACTCTTCTGAAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS-3UTR CCA 90 bp CACTTCAGAAGAGTCTATGCTTCCCGTGTGAGGCCCTGGTGTCAATCCTCAATCGGATCAATCTCTCCATaGACTGTCACCACAACTTTA +
Preference number: 4 (lower is better)
Translates to: HFRRVYASRVRPWCQSSIGSISP*TVTTTL
Trigger: TAAAGTTGTGGTGACAGTCCATGGAGAGATTGATCC...GATTGAGGATTGACACCAGGGCCTCACACGGGAAGCATAGACTCTTCTGAAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
3UTR CAA 72 bp ATAGATGGTTGTGAGCCATCATGTGGTTTCTGGGAATaGAACTCAGGACCTCTGGAAGAACAGTCAGTGTAC +
Preference number: 4 (lower is better)
Translates to: IDGCEPSCGFWE*NSGPLEEQSVY
Trigger: GTACACTGACTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATGATGGCTCACAACCATCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS-3UTR GCA 90 bp AATACATCTAAATACAGGCCTTACATTACTTTAATGCTCGGGTACTCTAGAACAGGCCATTCGGATTGTTaGATTTCCCAAACACTCTTA +
Preference number: 4 (lower is better)
Translates to: NTSKYRPYITLMLGYSRTGHSDC*ISQTLL
Trigger: TAAGAGTGTTTGGGAAATGCAACAATCCGAATGGCC...TGTTCTAGAGTACCCGAGCATTAAAGTAATGTAAGGCCTGTATTTAGATGTATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS TCA 90 bp TCTCTTCATCGCTCAGAGATGGGCTGTGCAGCCGGTGGCTCGCGCTaGAGGACACGAGGCGCGACAGTCGCGCGCGGCGACGAAGGTCAC +
Preference number: 5 (lower is better)
Translates to: SLHRSEMGCAAGGSR*RTRGATVARGDEGH
Trigger: GTGACCTTCGTCGCCGCGCGCGACTGTCGCGCCTCGTGTCCTTCAGCGCGAGCCACCGGCTGCACAGCCCATCTCTGAGCGATGAAGAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS CCA 90 bp ACTCTTAAGTTCTCTTCATCGCTCAGAGATGGGCTGTGCAGCCGGTaGCTCGCGCTGAAGGACACGAGGCGCGACAGTCGCGCGCGGCGA +
Preference number: 5 (lower is better)
Translates to: TLKFSSSLRDGLCSR*LALKDTRRDSRARR
Trigger: TCGCCGCGCGCGACTGTCGCGCCTCGTGTCCTTCAGCGCGAGCCACCGGCTGCACAGCCCATCTCTGAGCGATGAAGAGAACTTAAGAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS GCA 90 bp TTCCCAAACACTCTTAAGTTCTCTTCATCGCTCAGAGATGGGCTGTaGAGCCGGTGGCTCGCGCTGAAGGACACGAGGCGCGACAGTCGC +
Preference number: 5 (lower is better)
Translates to: FPNTLKFSSSLRDGL*SRWLALKDTRRDSR
Trigger: GCGACTGTCGCGCCTCGTGTCCTTCAGCGCGAGCCACCGGCTGCACAGCCCATCTCTGAGCGATGAAGAGAACTTAAGAGTGTTTGGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS-3UTR CAA 90 bp CTTCAGAAGAGTCTATGCTTCCCGTGTGAGGCCCTGGTGTCAATCCTCAATCCTCCGTGGCCATTCGGATaGTTGCATTTCCCAAACACT +
Preference number: 5 (lower is better)
Translates to: LQKSLCFPCEALVSILNPPWPFG*LHFPNT
Trigger: AGTGTTTGGGAAATGCAACAATCCGAATGGCCACGG...AGGATTGAGGATTGACACCAGGGCCTCACACGGGAAGCATAGACTCTTCTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS GCA 90 bp CTGTCACCACAACTTTATAGTTGTGCCCGTGGCCATTCGGATTGTTaGATTTCCCAAACACTCTTAAGTTCTCTTCATCGCTCAGAGATG +
Preference number: 5 (lower is better)
Translates to: LSPQLYSCARGHSDC*ISQTLLSSLHRSEM
Trigger: CATCTCTGAGCGATGAAGAGAACTTAAGAGTGTTTGGGAAATGCAACAATCCGAATGGCCACGGGCACAACTATAAAGTTGTGGTGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS-3UTR CAA 90 bp AATACATCTAAATACAGGCCTTACATTACTTTAATGCTCGGGTACTCTAGAACATGGCCATTCGGATTGTaGCATTTCCCAAACACTCTT +
Preference number: 5 (lower is better)
Translates to: NTSKYRPYITLMLGYSRTWPFGL*HFPNTL
Trigger: AAGAGTGTTTGGGAAATGCAACAATCCGAATGGCCA...TGTTCTAGAGTACCCGAGCATTAAAGTAATGTAAGGCCTGTATTTAGATGTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS TCA 72 bp CGCTCAGAGATGGGCTGTGCAGCCGGTGGCTCGCGCTaGAGGACACGAGGCGCGACAGTCGCGCGCGGCGAC +
Preference number: 6 (lower is better)
Translates to: RSEMGCAAGGSR*RTRGATVARGD
Trigger: GTCGCCGCGCGCGACTGTCGCGCCTCGTGTCCTTCAGCGCGAGCCACCGGCTGCACAGCCCATCTCTGAGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS CCA 72 bp TTCTCTTCATCGCTCAGAGATGGGCTGTGCAGCCGGTaGCTCGCGCTGAAGGACACGAGGCGCGACAGTCGC +
Preference number: 6 (lower is better)
Translates to: FSSSLRDGLCSR*LALKDTRRDSR
Trigger: GCGACTGTCGCGCCTCGTGTCCTTCAGCGCGAGCCACCGGCTGCACAGCCCATCTCTGAGCGATGAAGAGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034570.7
CDS TCA 72 bp TCCGCAAAGTACGGCACATCCAGGTCCAGGTTCTTGTaGTCAAGAGGCTTCATGATGGCCTCCTCCATGTAT +
Preference number: 6 (lower is better)
Translates to: SAKYGTSRSRFL*SRGFMMASSMY
Trigger: ATACATGGAGGAGGCCATCATGAAGCCTCTTGATCACAAGAACCTGGACCTGGATGTGCCGTACTTTGCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034570.7
ENSMUST00000214873.2
ENSMUST00000215416.2