Pregenerated sensors for PTRH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053746Ensembl transcript IDs: ENSMUST00000066352.6
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCGCAAATAGCGAACGGGGAGACCAAGCTGCTGCAGAAACAGACTaGTGTGGCCACAGTCCCTCCTTGAATCTGCAAGTAGCCTGGGGA | + |
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Preference number: 1 (lower is better) Translates to: TANSERGDQAAAETD*CGHSPSLNLQVAWG Trigger: TCCCCAGGCTACTTGCAGATTCAAGGAGGGACTGTGGCCACATCAGTCTGTTTCTGCAGCAGCTTGGTCTCCCCGTTCGCTATTTGCGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| 3UTR-3UTR CCA 90 bp | CTGGAGCTCTCAAAAGGTTCAGAAAGTTTACCCTTCCTAGACCTTTCCTACACCAGAAACAGACTGATGTaGCCACAGTCCCTCCTTGAA | + |
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Preference number: 2 (lower is better) Translates to: LELSKGSESLPFLDLSYTRNRLM*PQSLLE Trigger: TTCAAGGAGGGACTGTGGCCACATCAGTCTGTTTCT...GGTGTAGGAAAGGTCTAGGAAGGGTAAACTTTCTGAACCTTTTGAGAGCTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| 3UTR-3UTR GCA 90 bp | TCTTTAATCTTGCAGATCTACCCATCTGGAGCTCTCAAAAGGTTCAGAAAGTTTGGGAGACCAAGCTGCTaGAGAAACAGACTGATGTGG | + |
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Preference number: 2 (lower is better) Translates to: SLILQIYPSGALKRFRKFGRPSC*RNRLMW Trigger: CCACATCAGTCTGTTTCTGCAGCAGCTTGGTCTCCC...AAACTTTCTGAACCTTTTGAGAGCTCCAGATGGGTAGATCTGCAAGATTAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| 3UTR-3UTR CCA 90 bp | CAAGTTCGTATCTTTAATCTTGCAGATCTACCCATCTGGAGCTCTCAAAAGGTTAAGTTATATAAACATTaGGTACCACTGTGTCATTGC | + |
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Preference number: 2 (lower is better) Translates to: QVRIFNLADLPIWSSQKVKLYKH*VPLCHC Trigger: GCAATGACACAGTGGTACCCAATGTTTATATAACTT...AACCTTTTGAGAGCTCCAGATGGGTAGATCTGCAAGATTAAAGATACGAACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| 3UTR TCA 72 bp | AGCGAACGGGGAGACCAAGCTGCTGCAGAAACAGACTaGTGTGGCCACAGTCCCTCCTTGAATCTGCAAGTA | + |
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Preference number: 3 (lower is better) Translates to: SERGDQAAAETD*CGHSPSLNLQV Trigger: TACTTGCAGATTCAAGGAGGGACTGTGGCCACATCAGTCTGTTTCTGCAGCAGCTTGGTCTCCCCGTTCGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| 3UTR CCA 72 bp | GTGTCATTGCAGTTCTGTGGCCCTGTCTTGGCTTCATaGCACCGGCAGGCAGTCAAACAGGTAGATATATCC | + |
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Preference number: 3 (lower is better) Translates to: VSLQFCGPVLAS*HRQAVKQVDIS Trigger: GGATATATCTACCTGTTTGACTGCCTGCCGGTGCCATGAAGCCAAGACAGGGCCACAGAACTGCAATGACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| 3UTR CCA 72 bp | ATAAACATTGGGTACCACTGTGTCATTGCAGTTCTGTaGCCCTGTCTTGGCTTCATGGCACCGGCAGGCAGT | + |
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Preference number: 3 (lower is better) Translates to: INIGYHCVIAVL*PCLGFMAPAGS Trigger: ACTGCCTGCCGGTGCCATGAAGCCAAGACAGGGCCACAGAACTGCAATGACACAGTGGTACCCAATGTTTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| 3UTR CCA 72 bp | CAAGTTCGTATCTTTAATCTTGCAGATCTACCCATCTaGAGCTCTCAAAAGGTTCAGAAAGTTTACCCTTCC | + |
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Preference number: 3 (lower is better) Translates to: QVRIFNLADLPI*SSQKVQKVYPS Trigger: GGAAGGGTAAACTTTCTGAACCTTTTGAGAGCTCCAGATGGGTAGATCTGCAAGATTAAAGATACGAACTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR TCA 90 bp | TGGCCACAGTCCCTCCTTGAATCTGCAAGTAGCCTGGGGAAACCCAGGGAAGTTCGGAGCAGTACCAGCTaGGCATCCCCGAGCGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: WPQSLLESASSLGKPREVRSSTS*ASPSGA Trigger: GGCCCCGCTCGGGGATGCTCAGCTGGTACTGCTCCG...AACTTCCCTGGGTTTCCCCAGGCTACTTGCAGATTCAAGGAGGGACTGTGGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR GCA 90 bp | CTGATGTGGCCACAGTCCCTCCTTGAATCTGCAAGTAGCCTGGGGAAACCCAGGTATGGCCCCTTGCGCTaGCCCCCAGCTTCAGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: LMWPQSLLESASSLGKPRYGPLR*PPASEP Trigger: TGGCTCTGAAGCTGGGGGGCAGCGCAAGGGGCCATA...CCTGGGTTTCCCCAGGCTACTTGCAGATTCAAGGAGGGACTGTGGCCACATCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR GCA 90 bp | CTGGAGCTCTCAAAAGGTTCAGAAAGTTTACCCTTCCTAGACCTTTCCTACACCGCCATGCCCACACTGTaGCGGGTGCCGGGCATTCCG | + |
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Preference number: 4 (lower is better) Translates to: LELSKGSESLPFLDLSYTAMPTL*RVPGIP Trigger: CGGAATGCCCGGCACCCGGCACAGTGTGGGCATGGC...GGTGTAGGAAAGGTCTAGGAAGGGTAAACTTTCTGAACCTTTTGAGAGCTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR GCA 90 bp | CTGGAGCTCTCAAAAGGTTCAGAAAGTTTACCCTTCCTAGACCTTTCCTACACCGTGTGGGGCGCCCGATaGCCACCAGCAGCCTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: LELSKGSESLPFLDLSYTVWGAR*PPAALA Trigger: TGCCAAGGCTGCTGGTGGGCATCGGGCGCCCCACAC...GGTGTAGGAAAGGTCTAGGAAGGGTAAACTTTCTGAACCTTTTGAGAGCTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| 3UTR CAA 72 bp | GGTACCACTGTGTCATTGCAGTTCTGTGGCCCTGTCTaGGCTTCATGGCACCGGCAGGCAGTCAAACAGGTA | + |
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Preference number: 4 (lower is better) Translates to: GTTVSLQFCGPV*ASWHRQAVKQV Trigger: TACCTGTTTGACTGCCTGCCGGTGCCATGAAGCCAAGACAGGGCCACAGAACTGCAATGACACAGTGGTACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR GCA 90 bp | CTGATGTGGCCACAGTCCCTCCTTGAATCTGCAAGTAGCCTGGGGAAACCCAGGCAGCAGCCTTGGCATTaGATTGGAGTTCAGACAGCT | + |
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Preference number: 4 (lower is better) Translates to: LMWPQSLLESASSLGKPRQQPWH*IGVQTA Trigger: AGCTGTCTGAACTCCAATGCAATGCCAAGGCTGCTG...CCTGGGTTTCCCCAGGCTACTTGCAGATTCAAGGAGGGACTGTGGCCACATCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR CCA 90 bp | CAAGTTCGTATCTTTAATCTTGCAGATCTACCCATCTGGAGCTCTCAAAAGGTTGTGCCGGGCATTCCGTaGTTCCCCAGGCCAGCCACC | + |
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Preference number: 4 (lower is better) Translates to: QVRIFNLADLPIWSSQKVVPGIP*FPRPAT Trigger: GGTGGCTGGCCTGGGGAACCACGGAATGCCCGGCAC...AACCTTTTGAGAGCTCCAGATGGGTAGATCTGCAAGATTAAAGATACGAACTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR CCA 90 bp | CTGGAGCTCTCAAAAGGTTCAGAAAGTTTACCCTTCCTAGACCTTTCCTACACCAAACAGCCCAGGACATaGTTCTCCACCATATTAGGG | + |
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Preference number: 4 (lower is better) Translates to: LELSKGSESLPFLDLSYTKQPRT*FSTILG Trigger: CCCTAATATGGTGGAGAACCATGTCCTGGGCTGTTT...GGTGTAGGAAAGGTCTAGGAAGGGTAAACTTTCTGAACCTTTTGAGAGCTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR CCA 90 bp | TCTTTAATCTTGCAGATCTACCCATCTGGAGCTCTCAAAAGGTTCAGAAAGTTTCTTCGAGCACGGATGTaGTCCAGGAGCAGGTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: SLILQIYPSGALKRFRKFLRARM*SRSRSV Trigger: CACTGACCTGCTCCTGGACCACATCCGTGCTCGAAG...AAACTTTCTGAACCTTTTGAGAGCTCCAGATGGGTAGATCTGCAAGATTAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR CCA 90 bp | TCTTTAATCTTGCAGATCTACCCATCTGGAGCTCTCAAAAGGTTCAGAAAGTTTGCCCACCAGCAGCCTTaGCATTGCATTGGAGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: SLILQIYPSGALKRFRKFAHQQP*HCIGVQ Trigger: CTGAACTCCAATGCAATGCCAAGGCTGCTGGTGGGC...AAACTTTCTGAACCTTTTGAGAGCTCCAGATGGGTAGATCTGCAAGATTAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS TCA 90 bp | CGCCCGTTGACGTTCATGAGGCGCCGCGGCCGGAGCAGTACCAGCTaGGCATCCCCGAGCGGGGCCAGGGCGAGGTCAGCAGCACAGCGC | + |
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Preference number: 5 (lower is better) Translates to: RPLTFMRRRGRSSTS*ASPSGARARSAAQR Trigger: GCGCTGTGCTGCTGACCTCGCCCTGGCCCCGCTCGGGGATGCTCAGCTGGTACTGCTCCGGCCGCGGCGCCTCATGAACGTCAACGGGCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS GCA 90 bp | CCCAGTCGCCTTGCTATTTGCCCCAGCACCGCCATGCCCACACTGTaGCGGGTGCCGGGCATTCCGTGGTTCCCCAGGCCAGCCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: PSRLAICPSTAMPTL*RVPGIPWFPRPATS Trigger: GCTGGTGGCTGGCCTGGGGAACCACGGAATGCCCGGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS GCA 90 bp | TCTCCGCCACTCCCAGTCGCCTTGCTATTTGCCCCAGCACCGCCATaGCCACACTGTGCCGGGTGCCGGGCATTCCGTGGTTCCCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: SPPLPVALLFAPAPP*PHCAGCRAFRGSPG Trigger: GCCTGGGGAACCACGGAATGCCCGGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS GCA 90 bp | ACAGCGCGAGTCACGAGTCCAATTCTCCGCCACTCCCAGTCGCCTTaGTATTTGCCCCAGCACCGCCATGCCCACACTGTGCCGGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: TARVTSPILRHSQSP*YLPQHRHAHTVPGA Trigger: GGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGACTCGTGACTCGCGCTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS GCA 90 bp | GAGTCACGAGTCCAATTCTCCGCCACTCCCAGTCGCCTTGCTATTTaGCCCAGCACCGCCATGCCCACACTGTGCCGGGTGCCGGGCATT | + |
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Preference number: 5 (lower is better) Translates to: ESRVQFSATPSRLAI*PSTAMPTLCRVPGI Trigger: AATGCCCGGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGACTCGTGACTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS CCA 90 bp | ATGGTCCCTGGCTTCGAGCACGGATGTGGTCCAGGAGCAGGTCAGTaGCCTGATCCATCAATGGGGACAGTAGCTCCTGCTCCTCCGGGG | + |
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Preference number: 5 (lower is better) Translates to: MVPGFEHGCGPGAGQ*PDPSMGTVAPAPPG Trigger: CCCCGGAGGAGCAGGAGCTACTGTCCCCATTGATGGATCAGGCCACTGACCTGCTCCTGGACCACATCCGTGCTCGAAGCCAGGGACCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS TCA 90 bp | CCCTGGCTTCGAGCACGGATGTGGTCCAGGAGCAGGTCAGTGGCCTaGTCCATCAATGGGGACAGTAGCTCCTGCTCCTCCGGGGAGAAA | + |
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Preference number: 5 (lower is better) Translates to: PWLRARMWSRSRSVA*SINGDSSSCSSGEK Trigger: TTTCTCCCCGGAGGAGCAGGAGCTACTGTCCCCATTGATGGATCAGGCCACTGACCTGCTCCTGGACCACATCCGTGCTCGAAGCCAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR CAA 90 bp | TGCTGCAGAAACAGACTGATGTGGCCACAGTCCCTCCTTGAATCTGCAAGTAGCGCTACGCTGCGCCCGTaGACGTTCATGAGGCGCCGC | + |
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Preference number: 5 (lower is better) Translates to: CCRNRLMWPQSLLESASSATLRP*TFMRRR Trigger: GCGGCGCCTCATGAACGTCAACGGGCGCAGCGTAGC...GCTACTTGCAGATTCAAGGAGGGACTGTGGCCACATCAGTCTGTTTCTGCAGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR CAA 90 bp | GGAAGTTATATAAACATTGGGTACCACTGTGTCATTGCAGTTCTGTGGCCCTGTCAGTCGCCTTGCTATTaGCCCCAGCACCGCCATGCC | + |
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Preference number: 5 (lower is better) Translates to: GSYINIGYHCVIAVLWPCQSPCY*PQHRHA Trigger: GGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTG...ACAGGGCCACAGAACTGCAATGACACAGTGGTACCCAATGTTTATATAACTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS-3UTR CAA 90 bp | GGAAGTTATATAAACATTGGGTACCACTGTGTCATTGCAGTTCTGTGGCCCTGTCCACTCCCAGTCGCCTaGCTATTTGCCCCAGCACCG | + |
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Preference number: 5 (lower is better) Translates to: GSYINIGYHCVIAVLWPCPLPVA*LFAPAP Trigger: CGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGG...ACAGGGCCACAGAACTGCAATGACACAGTGGTACCCAATGTTTATATAACTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS GCA 72 bp | TTTGCCCCAGCACCGCCATGCCCACACTGTGCCGGGTaGCGGGCATTCCGTGGTTCCCCAGGCCAGCCACCA | + |
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Preference number: 6 (lower is better) Translates to: FAPAPPCPHCAG*RAFRGSPGQPP Trigger: TGGTGGCTGGCCTGGGGAACCACGGAATGCCCGGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS CAA 72 bp | CCAAACAGCTCCGCAGCTCGGGCTACGCTGCGCCCGTaGACGTTCATGAGGCGCCGCGGCCGGAGCAGTACC | + |
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Preference number: 6 (lower is better) Translates to: PNSSAARATLRP*TFMRRRGRSST Trigger: GGTACTGCTCCGGCCGCGGCGCCTCATGAACGTCAACGGGCGCAGCGTAGCCCGAGCTGCGGAGCTGTTTGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS GCA 72 bp | CTTGCTATTTGCCCCAGCACCGCCATGCCCACACTGTaGCGGGTGCCGGGCATTCCGTGGTTCCCCAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: LAICPSTAMPTL*RVPGIPWFPRP Trigger: TGGCCTGGGGAACCACGGAATGCCCGGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS GCA 72 bp | CTCCCAGTCGCCTTGCTATTTGCCCCAGCACCGCCATaGCCACACTGTGCCGGGTGCCGGGCATTCCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: LPVALLFAPAPP*PHCAGCRAFRG Trigger: ACCACGGAATGCCCGGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS CAA 90 bp | CGAGTCACGAGTCCAATTCTCCGCCACTCCCAGTCGCCTTGCTATTaGCCCCAGCACCGCCATGCCCACACTGTGCCGGGTGCCGGGCAT | + |
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Preference number: 6 (lower is better) Translates to: RVTSPILRHSQSPCY*PQHRHAHTVPGAGH Trigger: ATGCCCGGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGACTCGTGACTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS CAA 90 bp | CACAGCGCGAGTCACGAGTCCAATTCTCCGCCACTCCCAGTCGCCTaGCTATTTGCCCCAGCACCGCCATGCCCACACTGTGCCGGGTGC | + |
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Preference number: 6 (lower is better) Translates to: HSASHESNSPPLPVA*LFAPAPPCPHCAGC Trigger: GCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGACTCGTGACTCGCGCTGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS GCA 72 bp | GTCCAATTCTCCGCCACTCCCAGTCGCCTTGCTATTTaGCCCAGCACCGCCATGCCCACACTGTGCCGGGTG | + |
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Preference number: 6 (lower is better) Translates to: VQFSATPSRLAI*PSTAMPTLCRV Trigger: CACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS CCA 72 bp | AGCTCCTGCTCCTCCGGGGAGAAACAGCCCAGGACATaGTTCTCCACCATATTAGGGTGTGTGGGGCGCCCG | + |
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Preference number: 6 (lower is better) Translates to: SSCSSGEKQPRT*FSTILGCVGRP Trigger: CGGGCGCCCCACACACCCTAATATGGTGGAGAACCATGTCCTGGGCTGTTTCTCCCCGGAGGAGCAGGAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS CAA 72 bp | AGTCCAATTCTCCGCCACTCCCAGTCGCCTTGCTATTaGCCCCAGCACCGCCATGCCCACACTGTGCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: SPILRHSQSPCY*PQHRHAHTVPG Trigger: ACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS GCA 72 bp | GTCACGAGTCCAATTCTCCGCCACTCCCAGTCGCCTTaGTATTTGCCCCAGCACCGCCATGCCCACACTGTG | + |
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Preference number: 6 (lower is better) Translates to: VTSPILRHSQSP*YLPQHRHAHTV Trigger: CACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGACTCGTGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS CCA 72 bp | GGCTTCGAGCACGGATGTGGTCCAGGAGCAGGTCAGTaGCCTGATCCATCAATGGGGACAGTAGCTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: GFEHGCGPGAGQ*PDPSMGTVAPA Trigger: AGCAGGAGCTACTGTCCCCATTGATGGATCAGGCCACTGACCTGCTCCTGGACCACATCCGTGCTCGAAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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| CDS CAA 72 bp | AGTCACGAGTCCAATTCTCCGCCACTCCCAGTCGCCTaGCTATTTGCCCCAGCACCGCCATGCCCACACTGT | + |
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Preference number: 6 (lower is better) Translates to: SHESNSPPLPVA*LFAPAPPCPHC Trigger: ACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGACTCGTGACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066352.6 |
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