RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTPRS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000013236

Ensembl transcript IDs: ENSMUST00000067538.6, ENSMUST00000086828.10, ENSMUST00000223642.2, ENSMUST00000223859.2, ENSMUST00000224777.2, ENSMUST00000225456.2

Found 548 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGTGTCCCGTAGTCCCAGGTCCTCCATGCGGGGCACAGAGGTCATaGGTAGACGAGGACCCTCCCTGGTGTGCCAGGGACTGGAGCAGC +
Preference number: 1 (lower is better)
Translates to: KCPVVPGPPCGAQRS*VDEDPPWCARDWSS
Trigger: GCTGCTCCAGTCCCTGGCACACCAGGGAGGGTCCTCGTCTACTCATGACCTCTGTGCCCCGCATGGAGGACCTGGGACTACGGGACACTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR GCA 90 bp ATGCGGGGCACAGAGGTCATGAGTAGACGAGGACCCTCCCTGGTGTaGCAGGGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGG +
Preference number: 1 (lower is better)
Translates to: MRGTEVMSRRGPSLV*QGLEQQGQPLCPWW
Trigger: CCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCCCTGGCACACCAGGGAGGGTCCTCGTCTACTCATGACCTCTGTGCCCCGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCACATCCAGGGCACTTaGCGCAGGGCTGAGGTGTTG +
Preference number: 2 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGHIQGT*RRAEVL
Trigger: CAACACCTCAGCCCTGCGCCAAGTGCCCTGGATGTG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTAAGAGGAGGTCTCCCTaGGCCGCATCCTGCCCAGCG +
Preference number: 2 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRKRRSP*AASCPA
Trigger: CGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTT...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGCACATCCAGGGCACTTaGCGCAGGGCTGAGGTGTTG +
Preference number: 2 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPHIQGT*RRAEVL
Trigger: CAACACCTCAGCCCTGCGCCAAGTGCCCTGGATGTG...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCACATCCAGGGCACTTaGCGCAGGGCTGAGGTGTTG +
Preference number: 2 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSHIQGT*RRAEVL
Trigger: CAACACCTCAGCCCTGCGCCAAGTGCCCTGGATGTG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGTGTGACCCCAGCCTaGGGAGCAGTGGCTCCTTCT +
Preference number: 2 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPCVTPA*GAVAPS
Trigger: AGAAGGAGCCACTGCTCCCCAGGCTGGGGTCACACA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCAAGAGGAGGTCTCCCTaGGCCGCATCCTGCCCAGCG +
Preference number: 2 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPKRRSP*AASCPA
Trigger: CGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR GCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGGACCCTCCCTGGTGTaGCAGGGACTGGAGCAGCAA +
Preference number: 2 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPGPSLV*QGLEQQ
Trigger: TTGCTGCTCCAGTCCCTGGCACACCAGGGAGGGTCC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAATGTGTGACCCCAGCCTaGGGAGCAGTGGCTCCTTCT +
Preference number: 2 (lower is better)
Translates to: FTWGWGQCRACGKDAHTECVTPA*GAVAPS
Trigger: AGAAGGAGCCACTGCTCCCCAGGCTGGGGTCACACA...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTGTGTGACCCCAGCCTaGGGAGCAGTGGCTCCTTCT +
Preference number: 2 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPCVTPA*GAVAPS
Trigger: AGAAGGAGCCACTGCTCCCCAGGCTGGGGTCACACA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGCAGTGTCGGGCATGTaGGAAAGATGCACACACAGA +
Preference number: 2 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSAVSGM*ERCTHR
Trigger: TCTGTGTGTGCATCTTTCCCACATGCCCGACACTGC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCCATTCACATGGGGATaGGGGCAGTGTCGGGCATGT +
Preference number: 2 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPPFTWG*GQCRAC
Trigger: ACATGCCCGACACTGCCCCCATCCCCATGTGAATGG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCCTGGAACCTCGTTTTaGAATCAGAAGGGAATGAGG +
Preference number: 2 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSPGTSF*NQKGMR
Trigger: CCTCATTCCCTTCTGATTCCAAAACGAGGTTCCAGG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATGGTGTGCCAGGGACTaGAGCAGCAAGGCCAGCCAC +
Preference number: 2 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKWCARD*SSKASH
Trigger: GTGGCTGGCCTTGCTGCTCCAGTCCCTGGCACACCA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCAGAGGCACAAACAGTaGTCTTGTTTCTTTTTCAAA +
Preference number: 2 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPQRHKQ*SCFFFK
Trigger: TTTGAAAAAGAAACAAGATCACTGTTTGTGCCTCTG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR CCA 72 bp AAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTCTCCCTaGGCCGCATCCTGCCCAGCGGCGGGCCTAGGCTCA +
Preference number: 3 (lower is better)
Translates to: KAAPVSAKRRSP*AASCPAAGLGS
Trigger: TGAGCCTAGGCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGGCGCTGCCTT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR CCA 72 bp CAGGGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTaGTGGCCATGTCCCTGTAGTCTGGCCCGAGTGCCC +
Preference number: 3 (lower is better)
Translates to: QGLEQQGQPLCP*WPCPCSLARVP
Trigger: GGGCACTCGGGCCAGACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR TCA 72 bp GTAGTCCCAGGTCCTCCATGCGGGGCACAGAGGTCATaGGTAGACGAGGACCCTCCCTGGTGTGCCAGGGAC +
Preference number: 3 (lower is better)
Translates to: VVPGPPCGAQRS*VDEDPPWCARD
Trigger: GTCCCTGGCACACCAGGGAGGGTCCTCGTCTACTCATGACCTCTGTGCCCCGCATGGAGGACCTGGGACTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR GCA 72 bp ACAGAGGTCATGAGTAGACGAGGACCCTCCCTGGTGTaGCAGGGACTGGAGCAGCAAGGCCAGCCACTGTGT +
Preference number: 3 (lower is better)
Translates to: TEVMSRRGPSLV*QGLEQQGQPLC
Trigger: ACACAGTGGCTGGCCTTGCTGCTCCAGTCCCTGGCACACCAGGGAGGGTCCTCGTCTACTCATGACCTCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CAA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCCCTGGAACCTCGTTTaGGAATCAGAAGGGAATGAG +
Preference number: 3 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTPWNLV*ESEGNE
Trigger: CTCATTCCCTTCTGATTCCAAAACGAGGTTCCAGGG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR TCA 72 bp CCCACCCTGGAACCTCGTTTTGGAATCAGAAGGGAATaGGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGT +
Preference number: 3 (lower is better)
Translates to: PTLEPRFGIRRE*GRQRLSPRRGG
Trigger: ACCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAACGAGGTTCCAGGGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR CCA 72 bp ACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTaGGAAAGATGCACACACAGAAGCCGTCGAAGTGGC +
Preference number: 3 (lower is better)
Translates to: TIHMGMGAVSGM*ERCTHRSRRSG
Trigger: GCCACTTCGACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CAA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCCCTGGAACCTCGTTTaGGAATCAGAAGGGAATGAG +
Preference number: 3 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSPWNLV*ESEGNE
Trigger: CTCATTCCCTTCTGATTCCAAAACGAGGTTCCAGGG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR-3UTR CAA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGCCCTGGAACCTCGTTTaGGAATCAGAAGGGAATGAG +
Preference number: 3 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPPWNLV*ESEGNE
Trigger: CTCATTCCCTTCTGATTCCAAAACGAGGTTCCAGGG...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR CCA 72 bp CTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTaGATATCCCCCAAGTGTCCCGTAGTCCCAGGTCCT +
Preference number: 3 (lower is better)
Translates to: LLQRETSVAPGG*ISPKCPVVPGP
Trigger: AGGACCTGGGACTACGGGACACTTGGGGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR GCA 72 bp GTACTGACCCACTCTCCTACAAAGAGAGACCTCAGTTaGTCCAGGGGGTTGGATATCCCCCAAGTGTCCCGT +
Preference number: 3 (lower is better)
Translates to: VLTHSPTKRDLS*SRGLDIPQVSR
Trigger: ACGGGACACTTGGGGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTCAGTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGTTTGGCCTGCAGCGTaGGCTGGCGCACGACCGCGG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGVWPAA*AGARPR
Trigger: CCGCGGTCGTGCGCCAGCGCACGCTGCAGGCCAAAC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR GCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGGGAGCGCTGGCTGGTaGCTGCTCACCTGTGCGGGT +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGGSAGW*LLTCAG
Trigger: ACCCGCACAGGTGAGCAGGCACCAGCCAGCGCTCCC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCGCAGGCTGCGCCTCTaGAGCCGGGAGATGTCCTGG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGRRLRL*SREMSW
Trigger: CCAGGACATCTCCCGGCTGCAGAGGCGCAGCCTGCG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCCTGGGAGCGCTGGCTaGTGCCTGCTCACCTGTGCG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGPGSAG*CLLTCA
Trigger: CGCACAGGTGAGCAGGCACCAGCCAGCGCTCCCAGG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGGATCACCCGTGGCCTaGCACACGAAGGAGGCCACG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGGSPVA*HTKEAT
Trigger: CGTGGCCTCCTTCGTGTGCCAGGCCACGGGTGATCC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCAGGATGGAGAAGCGTaGGGCCACACGGCGGACTCG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGQDGEA*GHTADS
Trigger: CGAGTCCGCCGTGTGGCCCCACGCTTCTCCATCCTG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGCCCGTTGCTGGCACTaGGGTCCACAGGCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGARCWH*GPQAGS
Trigger: ACTTCCTGCCTGTGGACCCCAGTGCCAGCAACGGGC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGGCTCATGGGCAGGATaGAGAAGCGTGGGGCCACAC +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGGSWAG*RSVGPH
Trigger: GTGTGGCCCCACGCTTCTCCATCCTGCCCATGAGCC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCCTCGCCGTCCACAATaGGCTGAGGGTCCGGGTTGT +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGPRRPQ*AEGPGC
Trigger: ACAACCCGGACCCTCAGCCCATTGTGGACGGCGAGG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCTCGGCTGGCCAGTACTaGTGGCACTTTTCCCGGCCC +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGSAGQY*WHFSRP
Trigger: GGGCCGGGAAAAGTGCCACCAGTACTGGCCAGCCGA...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCCCAATGCTGGTCTCTaGCTTGGCCTCAGCCCGCAA +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGPNAGL*LGLSPQ
Trigger: TTGCGGGCTGAGGCCAAGTCAGAGACCAGCATTGGG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCCAGTCGCGTCATCATaGCCACAGTGGCCGATCGCT +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGPVASS*PQWPIA
Trigger: AGCGATCGGCCACTGTGGTCATGATGACGCGACTGG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCTCGCCCACCGAGTTCTaGGCCACACACTCGTACACG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGSPTEF*ATHSYT
Trigger: CGTGTACGAGTGTGTGGCCCAGAACTCGGTGGGCGA...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCGCAAGTTCATGGGCTaGCCAGGAACTCCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGRKFMG*PGTPCW
Trigger: CCAGCAGGGAGTTCCTGGCCAGCCCATGAACTTGCG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCAGCCCGCAAGTTCATaGGCTGGCCAGGAACTCCCT +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGQPASS*AGQELP
Trigger: AGGGAGTTCCTGGCCAGCCCATGAACTTGCGGGCTG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGACATAGCGGTGGCCTaGCTCCAAGCCCCTGTTGTC +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGDIAVA*LQAPVV
Trigger: GACAACAGGGGCTTGGAGCCAGGCCACCGCTATGTC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCTTTGGTGCGGGGCTCTaGGTCCTTGCGTTTGCTGTC +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGFGAGL*VLAFAV
Trigger: GACAGCAAACGCAAGGACTCAGAGCCCCGCACCAAA...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS-3UTR TCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCTAGGGGCTGCAGGATaGCTCGTGAGTGGTCATAGG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGLGAAG*LVSGHR
Trigger: CCTATGACCACTCACGAGTCATCCTGCAGCCCCTAG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCCACACACTCGTACTTaGCCTGGTCTGTCTCCTCGC +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGPHTRT*PGLSPR
Trigger: GCGAGGAGACAGACCAGGGCAAGTACGAGTGTGTGG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCTCCCACGTGAATTGCTaGCCGGGGTCAATGGACTCG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGSHVNC*PGSMDS
Trigger: CGAGTCCATTGACCCCGGGCAGCAATTCACGTGGGA...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGGCCCATGTCAATGTTaGGGAAGCCAGGAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGGPCQC*GSQEAA
Trigger: AGCTGCCTCCTGGCTTCCCCAACATTGACATGGGCC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCAGCACAGAGCATGGTaGCTGTGCGTGTGCGCTCTA +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGQHRAW*LCVCAL
Trigger: TAGAGCGCACACGCACAGCCACCATGCTCTGTGCTG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCACCTTGAAGTTCTTTaGGGAGACTGGGTCCCGCGC +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGHLEVL*GDWVPR
Trigger: GCGCGGGACCCAGTCTCCCCAAAGAACTTCAAGGTG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR TCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCACTCCGTATTGGGCTTaGGGTCCTCCACCACAAAGG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGTPYWA*GPPPQR
Trigger: CCTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGT...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCTCCACGAGAGCCCAATaGTGGTCTCTGACTTGGCCT +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGSTRAQ*WSLTWP
Trigger: AGGCCAAGTCAGAGACCAGCATTGGGCTCTCGTGGA...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCCCTCGGGGGTCTGCTaGACCGACAGGGTGGGGCGG +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSPSGVC*TDRVGR
Trigger: CCGCCCCACCCTGTCGGTGCAGCAGACCCCCGAGGG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCTGCTGGGTCTTGACCTaGATGGGGTCTGACAGTGGT +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGCWVLT*MGSDSG
Trigger: ACCACTGTCAGACCCCATCCAGGTCAAGACCCAGCA...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGCCTGCAGCGTGCGCTaGCGCACGACCGCGGTGAAG +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTACSVR*RTTAVK
Trigger: CTTCACCGCGGTCGTGCGCCAGCGCACGCTGCAGGC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGCTGCACCGACAGGGTaGGGCGGCCCAGCACTGCTC +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTAAPTG*GGPALL
Trigger: GAGCAGTGCTGGGCCGCCCCACCCTGTCGGTGCAGC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR TCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGGGGTCCGGGTCCTCTaGGCCCAGCGGTCGGTAGCG +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTGVRVL*AQRSVA
Trigger: CGCTACCGACCGCTGGGCTCAGAGGACCCGGACCCC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR GCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGCGCTGGCTGGTGCCTaGTCACCTGTGCGGGTCACC +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTALAGA*SPVRVT
Trigger: GGTGACCCGCACAGGTGAGCAGGCACCAGCCAGCGC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCCTGGGAGCGCTGGCTaGTGCCTGCTCACCTGTGCG +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTPGSAG*CLLTCA
Trigger: CGCACAGGTGAGCAGGCACCAGCCAGCGCTCCCAGG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGTGGCTGAGCATACCTaGTGTCTGGAAGTTGATGCG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGVAEHT*CLEVDA
Trigger: CGCATCAACTTCCAGACACCAGGTATGCTCAGCCAC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCACGGTGAGCTTTGCATaGATTGTGATTTCGCCCACC +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGTVSFA*IVISPT
Trigger: GGTGGGCGAAATCACAATTCATGCAAAGCTCACCGT...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGACCTGGATGGGGTCTaGCAGTGGTCCGTCGCCCAC +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTDLDGV*QWSVAH
Trigger: GTGGGCGACGGACCACTGTCAGACCCCATCCAGGTC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTACGAGGGCCCCGTTGTaGGTTTCTGGCGGTGGCGGG +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSTRAPL*VSGGGG
Trigger: CCCGCCACCGCCAGAAACTCACAACGGGGCCCTCGT...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR TCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCAAGCTCCATGCCCGTaGCGTGCTCGCCAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTQAPCP*RARQAP
Trigger: TGGAGCCTGGCGAGCACGTCACGGGCATGGAGCTTG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGGCGCTGCAGTGCACTaGGATGGGTCCGTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSGAAVH*DGSVLA
Trigger: GGCCAGGACGGACCCATCTCAGTGCACTGCAGCGCC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGGGGATGCTCAGCGCTaGCGCGGCCTCCTCGCCCAA +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTGDAQR*RGLLAQ
Trigger: TTGGGCGAGGAGGCCGCGGCAGCGCTGAGCATCCCC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGCACCTCCAGCTGTCTaGAGTGGCGCAGGCTGCGCC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSAPPAV*SGAGCA
Trigger: GGCGCAGCCTGCGCCACTCCAGACAGCTGGAGGTGC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGCCCAATCACCCAGATaGGGCCCTCCTCGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPAQSPR*GPPRRP
Trigger: TGGACGGCGAGGAGGGCCTCATCTGGGTGATTGGGC...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCAAGCTCCATGCCCGTaGCGTGCTCGCCAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSQAPCP*RARQAP
Trigger: TGGAGCCTGGCGAGCACGTCACGGGCATGGAGCTTG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGCGCTGGCTGGTGCCTaGTCACCTGTGCGGGTCACC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTALAGA*SPVRVT
Trigger: GGTGACCCGCACAGGTGAGCAGGCACCAGCCAGCGC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGCACGTCCTCATCGGTaGGGACGACCACGGGCGAGC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTARPHR*GRPRAS
Trigger: GCTCGCCCGTGGTCGTCCGCACCGATGAGGACGTGC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCTGCCCTCGGGGGTCTaGTGCACCGACAGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKLPSGV*CTDRVG
Trigger: CCCCACCCTGTCGGTGCAGCAGACCCCCGAGGGCAG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR GCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTTCCATGCCCGTGACGTaGTCGCCAGGCTCCACCTGG +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSSMPVT*SPGSTW
Trigger: CCAGGTGGAGCCTGGCGAGCACGTCACGGGCATGGA...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCCATGCCCGTGACGTaGTCGCCAGGCTCCACCTGG +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPSMPVT*SPGSTW
Trigger: CCAGGTGGAGCCTGGCGAGCACGTCACGGGCATGGA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGCCCGTTGCTGGCACTaGGGTCCACAGGCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTARCWH*GPQAGS
Trigger: ACTTCCTGCCTGTGGACCCCAGTGCCAGCAACGGGC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCAGGATGGAGAAGCGTaGGGCCACACGGCGGACTCG +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSQDGEA*GHTADS
Trigger: CGAGTCCGCCGTGTGGCCCCACGCTTCTCCATCCTG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGCAGGATGGAGAAGCGTaGGGCCACACGGCGGACTCG +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPQDGEA*GHTADS
Trigger: CGAGTCCGCCGTGTGGCCCCACGCTTCTCCATCCTG...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACCTGGGAGCGCTGGCTaGTGCCTGCTCACCTGTGCG +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTPGSAG*CLLTCA
Trigger: CGCACAGGTGAGCAGGCACCAGCCAGCGCTCCCAGG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGCCTGCAGCGTGCGCTaGCGCACGACCGCGGTGAAG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKACSVR*RTTAVK
Trigger: CTTCACCGCGGTCGTGCGCCAGCGCACGCTGCAGGC...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTTCCAGCTGTCTGGAGTaGCGCAGGCTGCGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSSSCLE*RRLRLC
Trigger: GCAGAGGCGCAGCCTGCGCCACTCCAGACAGCTGGA...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGCACCTCCAGCTGTCTaGAGTGGCGCAGGCTGCGCC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTAPPAV*SGAGCA
Trigger: GGCGCAGCCTGCGCCACTCCAGACAGCTGGAGGTGC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGCACCTCCAGCTGTCTaGAGTGGCGCAGGCTGCGCC +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRAPPAV*SGAGCA
Trigger: GGCGCAGCCTGCGCCACTCCAGACAGCTGGAGGTGC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGACCTGGATGGGGTCTaGCAGTGGTCCGTCGCCCAC +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRDLDGV*QWSVAH
Trigger: GTGGGCGACGGACCACTGTCAGACCCCATCCAGGTC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACCGTCCACAATGGGCTaGGGGTCCGGGTTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTPSTMG*GSGLSS
Trigger: GCTGGACAACCCGGACCCTCAGCCCATTGTGGACGG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGGATGGGTGGGTGGCTaGGCATACCTGGTGTCTGGA +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTGWVGG*AYLVSG
Trigger: TCCAGACACCAGGTATGCTCAGCCACCCACCCATCC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCAAGGACGGTGAGCTTTaGATGAATTGTGATTTCGCC +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGKDGEL*MNCDFA
Trigger: GGCGAAATCACAATTCATGCAAAGCTCACCGTCCTT...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGGGAGCGCTGGCTGGTaGCTGCTCACCTGTGCGGGT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKGSAGW*LLTCAG
Trigger: ACCCGCACAGGTGAGCAGGCACCAGCCAGCGCTCCC...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCGTCTTCCAGCAGGCTaGCCACAGTGGTCAGGAGAC +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTRLPAG*PQWSGD
Trigger: GTCTCCTGACCACTGTGGGCAGCCTGCTGGAAGACG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCAGCGCGCCAGCAGGCTaGCCTCGGGGGTCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPSAPAG*PRGSAA
Trigger: TGCAGCAGACCCCCGAGGGCAGCCTGCTGGCGCGCT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR GCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGACTTGGGTGCACCCTaGTCTGGCCAGTCCGTGAAC +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTDLGAP*SGQSVN
Trigger: GTTCACGGACTGGCCAGAGCAGGGTGCACCCAAGTC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGGTCCGGGTTCCCGCTaGCAGCACAGAGCATGGTGG +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTGPGSR*QHRAWW
Trigger: CCACCATGCTCTGTGCTGCCAGCGGGAACCCGGACC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCTGCCAGTTGCCCACTaGGTGTTCCGGCTCCATGGT +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTLPVAH*VFRLHG
Trigger: ACCATGGAGCCGGAACACCCAGTGGGCAACTGGCAG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCTGCAGCGTGCGCTaGCGCACGACCGCGGTGAAG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEACSVR*RTTAVK
Trigger: CTTCACCGCGGTCGTGCGCCAGCGCACGCTGCAGGC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGAATCTTGTAGGGTGTaGGTGAGTTATAGTTGTCGG +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGESCRV*VSYSCR
Trigger: CCGACAACTATAACTCACCCACACCCTACAAGATTC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCCTCGCCGTCCACAATaGGCTGAGGGTCCGGGTTGT +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSPRRPQ*AEGPGC
Trigger: ACAACCCGGACCCTCAGCCCATTGTGGACGGCGAGG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCTCCACACCGCGGATaGGCTGCAGGCAGACACGCG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKPPHRG*AAGRHA
Trigger: CGCGTGTCTGCCTGCAGCCCATCCGCGGTGTGGAGG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCATTCCCACCGGGCATaGTCTCGTGGCTCATGGGCA +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSHSHRA*SRGSWA
Trigger: TGCCCATGAGCCACGAGATCATGCCCGGTGGGAATG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCTCCCTGCTGGGTCTTaGCCTGGATGGGGTCTGACA +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSLPAGS*PGWGLT
Trigger: TGTCAGACCCCATCCAGGTCAAGACCCAGCAGGGAG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCAAGCTCCATGCCCGTaGCGTGCTCGCCAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKQAPCP*RARQAP
Trigger: TGGAGCCTGGCGAGCACGTCACGGGCATGGAGCTTG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGGCGCTGCAGTGCACTaGGATGGGTCCGTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPGAAVH*DGSVLA
Trigger: GGCCAGGACGGACCCATCTCAGTGCACTGCAGCGCC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGCGCTGGCTGGTGCCTaGTCACCTGTGCGGGTCACC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRALAGA*SPVRVT
Trigger: GGTGACCCGCACAGGTGAGCAGGCACCAGCCAGCGC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGGGAGCGCTGGCTGGTaGCTGCTCACCTGTGCGGGT +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKGSAGW*LLTCAG
Trigger: ACCCGCACAGGTGAGCAGGCACCAGCCAGCGCTCCC...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCAGCTTCTTGGTCGTaGGGCCGTCCACATCCAGGG +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPSASWS*GRPHPG
Trigger: CCCTGGATGTGGACGGCCGCACGACCAAGAAGCTGA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAACGCAGGCTGCGCCTCTaGAGCCGGGAGATGTCCTGG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTERRLRL*SREMSW
Trigger: CCAGGACATCTCCCGGCTGCAGAGGCGCAGCCTGCG...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGTCCTCTGTGGTCTCTaGCAGTGGCCCCTGTGTTGC +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPVLCGL*QWPLCC
Trigger: GCAACACAGGGGCCACTGGCAGAGACCACAGAGGAC...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGACTTGGGTGCACCCTaGTCTGGCCAGTCCGTGAAC +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPDLGAP*SGQSVN
Trigger: GTTCACGGACTGGCCAGAGCAGGGTGCACCCAAGTC...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGGATCACCCGTGGCCTaGCACACGAAGGAGGCCACG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKGSPVA*HTKEAT
Trigger: CGTGGCCTCCTTCGTGTGCCAGGCCACGGGTGATCC...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGTTCCAGGTCACCCGTaGCTTAGGATCACCCGTGGC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSVPGHP*LRITRG
Trigger: GCCACGGGTGATCCTAAGCCACGGGTGACCTGGAAC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGAAGCCAGGAGGCAGCTaGTCCTCTCGAAGGACGGTG +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPKPGGS*SSRRTV
Trigger: CACCGTCCTTCGAGAGGACCAGCTGCCTCCTGGCTT...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCACTCGTACTTGCCCTaGTCTGTCTCCTCGCTGCTC +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTHSYLP*SVSSLL
Trigger: GAGCAGCGAGGAGACAGACCAGGGCAAGTACGAGTG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCCGGGCATGATCTCGTaGCTCATGGGCAGGATGGAG +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSPGMIS*LMGRME
Trigger: CTCCATCCTGCCCATGAGCCACGAGATCATGCCCGG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACATTCCTGGGAGCGCTaGCTGGTGCCTGCTCACCTG +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTHSWER*LVPAHL
Trigger: CAGGTGAGCAGGCACCAGCCAGCGCTCCCAGGAATG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACGGATCAGGCCATTaGGCTCCACAGGCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTHGSGH*APQAPP
Trigger: GGGAGGAGCCTGTGGAGCCCAATGGCCTGATCCGTG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGCAGGCTGCCCACAGTaGTCAGGAGACTGTCGTCCA +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSAGCPQ*SGDCRP
Trigger: TGGACGACAGTCTCCTGACCACTGTGGGCAGCCTGC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCAGCCCGCAAGTTCATaGGCTGGCCAGGAACTCCCT +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSQPASS*AGQELP
Trigger: AGGGAGTTCCTGGCCAGCCCATGAACTTGCGGGCTG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACGAGCTCTCGGGCCCTaGTCCCACCTCTGTGTAAGC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTRALGP*SHLCVS
Trigger: GCTTACACAGAGGTGGGACCAGGGCCCGAGAGCTCG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGGCCATGCCGTGAACTaGAAATGTCGCACCTCACGC +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTGHAVN*KCRTSR
Trigger: GCGTGAGGTGCGACATTTCCAGTTCACGGCATGGCC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAACCTCCACACCGCGGATaGGCTGCAGGCAGACACGCG +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKPPHRG*AAGRHA
Trigger: CGCGTGTCTGCCTGCAGCCCATCCGCGGTGTGGAGG...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCCTCCACACCGCGGATaGGCTGCAGGCAGACACGCG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPPPHRG*AAGRHA
Trigger: CGCGTGTCTGCCTGCAGCCCATCCGCGGTGTGGAGG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCACGCAGAATGTACTGTaGCATGTTATACTCTGCCAT +
Preference number: 4 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGTQNVL*HVILCH
Trigger: ATGGCAGAGTATAACATGCCACAGTACATTCTGCGT...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCATTCCCACCGGGCATaGTCTCGTGGCTCATGGGCA +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRHSHRA*SRGSWA
Trigger: TGCCCATGAGCCACGAGATCATGCCCGGTGGGAATG...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGACCTGGATGGGGTCTaGCAGTGGTCCGTCGCCCAC +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEDLDGV*QWSVAH
Trigger: GTGGGCGACGGACCACTGTCAGACCCCATCCAGGTC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGCCGTCCACAATGGGCTaGGGGTCCGGGTTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRPSTMG*GSGLSS
Trigger: GCTGGACAACCCGGACCCTCAGCCCATTGTGGACGG...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGCCCAATCACCCAGATaGGGCCCTCCTCGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRAQSPR*GPPRRP
Trigger: TGGACGGCGAGGAGGGCCTCATCTGGGTGATTGGGC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGCCCAATCACCCAGATaGGGCCCTCCTCGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPAQSPR*GPPRRP
Trigger: TGGACGGCGAGGAGGGCCTCATCTGGGTGATTGGGC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTTTGGTGCGGGGCTCTaGGTCCTTGCGTTTGCTGTC +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPFGAGL*VLAFAV
Trigger: GACAGCAAACGCAAGGACTCAGAGCCCCGCACCAAA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS-3UTR TCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACCAGTCGCGTCATCATaGCCACAGTGGCCGATCGCT +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTPVASS*PQWPIA
Trigger: AGCGATCGGCCACTGTGGTCATGATGACGCGACTGG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGCGGGTTGCAGGTCTTaGCTCTTCGCAGGAATGCCA +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPAGCRS*LFAGMP
Trigger: TGGCATTCCTGCGAAGAGTCAAGACCTGCAACCCGC...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGAACTGGCGAGCCTCTTaGACTCAAGCTCCATGCCCG +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPNWRAS*TQAPCP
Trigger: CGGGCATGGAGCTTGAGTTCAAGAGGCTCGCCAGTT...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGGTCTGTCTCCTCGCTaGTCTCAATCTGCAGGGCAC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSGLSPR*SQSAGH
Trigger: GTGCCCTGCAGATTGAGAGCAGCGAGGAGACAGACC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCCACACACTCGTACTTaGCCTGGTCTGTCTCCTCGC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSPHTRT*PGLSPR
Trigger: GCGAGGAGACAGACCAGGGCAAGTACGAGTGTGTGG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCACTCTCCTGTCGTGGTaGACTCCACGAGAGCCCAAT +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTTLLSW*TPREPN
Trigger: ATTGGGCTCTCGTGGAGTGCACCACGACAGGAGAGT...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGCTGCGTGGCAATGTATaGATTCTGCCGCCGGTAGCC +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPLRGNV*ILPPVA
Trigger: GGCTACCGGCGGCAGAATGCATACATTGCCACGCAG...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGGATCACCCGTGGCCTaGCACACGAAGGAGGCCACG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPGSPVA*HTKEAT
Trigger: CGTGGCCTCCTTCGTGTGCCAGGCCACGGGTGATCC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGTTCCAGGTCACCCGTaGCTTAGGATCACCCGTGGC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTVPGHP*LRITRG
Trigger: GCCACGGGTGATCCTAAGCCACGGGTGACCTGGAAC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGGCCCATGTCAATGTTaGGGAAGCCAGGAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPGPCQC*GSQEAA
Trigger: AGCTGCCTCCTGGCTTCCCCAACATTGACATGGGCC...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGGTCCGGGTTCCCGCTaGCAGCACAGAGCATGGTGG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPGPGSR*QHRAWW
Trigger: CCACCATGCTCTGTGCTGCCAGCGGGAACCCGGACC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGGTCCGGGTTCCCGCTaGCAGCACAGAGCATGGTGG +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRGPGSR*QHRAWW
Trigger: CCACCATGCTCTGTGCTGCCAGCGGGAACCCGGACC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCACTCGTACTTGCCCTaGTCTGTCTCCTCGCTGCTC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSHSYLP*SVSSLL
Trigger: GAGCAGCGAGGAGACAGACCAGGGCAAGTACGAGTG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGCACCCCAGCGCTGTTaGTGGCCACACACTCGTACT +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRAPQRC*WPHTRT
Trigger: AGTACGAGTGTGTGGCCACCAACAGCGCTGGGGTGC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCTCGCACGTAGAGGTTaGCAGGTGATGAGTAGCGCA +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTLARRG*QVMSSA
Trigger: TGCGCTACTCATCACCTGCCAACCTCTACGTGCGAG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTTCACTGGGAGGGCCCTaGCCAATGGAGTTGACAGCT +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSSLGGP*PMELTA
Trigger: AGCTGTCAACTCCATTGGCCAGGGCCCTCCCAGTGA...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCACGGATCAGGCCATTaGGCTCCACAGGCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKHGSGH*APQAPP
Trigger: GGGAGGAGCCTGTGGAGCCCAATGGCCTGATCCGTG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCTGCCAGTTGCCCACTaGGTGTTCCGGCTCCATGGT +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRLPVAH*VFRLHG
Trigger: ACCATGGAGCCGGAACACCCAGTGGGCAACTGGCAG...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGCAGGCTGCCCACAGTaGTCAGGAGACTGTCGTCCA +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRAGCPQ*SGDCRP
Trigger: TGGACGACAGTCTCCTGACCACTGTGGGCAGCCTGC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGCAGGCTGCCCACAGTaGTCAGGAGACTGTCGTCCA +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTAGCPQ*SGDCRP
Trigger: TGGACGACAGTCTCCTGACCACTGTGGGCAGCCTGC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGTGAGTTTCTGGCGGTaGCGGGCGCCAACTTACCAA +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSVSFWR*RAPTYQ
Trigger: TTGGTAAGTTGGCGCCCGCCACCGCCAGAAACTCAC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGCCGGAACACATAGGTaGCGCCCTTGTGTGCAGGCG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKAGTHR*RPCVQA
Trigger: CGCCTGCACACAAGGGCGCCACCTATGTGTTCCGGC...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTCCAGCTGTCTGGAGTaGCGCAGGCTGCGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPSSCLE*RRLRLC
Trigger: GCAGAGGCGCAGCCTGCGCCACTCCAGACAGCTGGA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGACATAGCGGTGGCCTaGCTCCAAGCCCCTGTTGTC +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRDIAVA*LQAPVV
Trigger: GACAACAGGGGCTTGGAGCCAGGCCACCGCTATGTC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCTCGCCGTCCACAATaGGCTGAGGGTCCGGGTTGT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKPRRPQ*AEGPGC
Trigger: ACAACCCGGACCCTCAGCCCATTGTGGACGGCGAGG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACATGCAGTGGACCACAATaGGGCCAGCATCAGGCGGGT +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTCSGPQ*GQHQAG
Trigger: ACCCGCCTGATGCTGGCCCCATTGTGGTCCACTGCA...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGCTGGCCAGTACTGGTaGCACTTTTCCCGGCCCATT +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPAGQYW*HFSRPI
Trigger: AATGGGCCGGGAAAAGTGCCACCAGTACTGGCCAGC...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGCTTCCAGAAGGATCTaGGTGGTGGTCGGGGGTATG +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRASRRI*VVVGGM
Trigger: CATACCCCCGACCACCACTCAGATCCTTCTGGAAGC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR TCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCGTCCACATCCAGGGTaGGCCCATTGTACTGAATCT +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTRPHPG*AHCTES
Trigger: AGATTCAGTACAATGGGCTCACCCTGGATGTGGACG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCGAATGTTCCCACGTaGATTGCTGCCCGGGGTCAA +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPSNVPT*IAARGQ
Trigger: TTGACCCCGGGCAGCAATTCACGTGGGAACATTCGA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGCAGCGCCTCGTGGATaGAGCCATACTGATCCTCTG +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTAAPRG*SHTDPL
Trigger: CAGAGGATCAGTATGGCTTCATCCACGAGGCGCTGC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGCAGCGCCTCGTGGATaGAGCCATACTGATCCTCTG +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRAAPRG*SHTDPL
Trigger: CAGAGGATCAGTATGGCTTCATCCACGAGGCGCTGC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTAACTGGCGAGCCTCTTaGACTCAAGCTCCATGCCCG +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRNWRAS*TQAPCP
Trigger: CGGGCATGGAGCTTGAGTTCAAGAGGCTCGCCAGTT...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTAGAGCATGGTGGCTGTaGGTGTGCGCTCTACAACCT +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSRAWWL*VCALQP
Trigger: AGGTTGTAGAGCGCACACGCACAGCCACCATGCTCT...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGACAGGCTCCTCCCACTaGACGATCATGGTGGTGGCG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKTGSSH*TIMVVA
Trigger: CGCCACCACCATGATCGTGCAGTGGGAGGAGCCTGT...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGTGTTTCTGCCAGTTaGCCACTGGGTGTTCCGGCT +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPCVSAS*PLGVPA
Trigger: AGCCGGAACACCCAGTGGGCAACTGGCAGAAACACA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCGTCTTCCAGCAGGCTaGCCACAGTGGTCAGGAGAC +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKRLPAG*PQWSGD
Trigger: GTCTCCTGACCACTGTGGGCAGCCTGCTGGAAGACG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTTCCACGAGAGCCCAATaGTGGTCTCTGACTTGGCCT +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSSTRAQ*WSLTWP
Trigger: AGGCCAAGTCAGAGACCAGCATTGGGCTCTCGTGGA...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTCAGCTTCTTGGTCGTaGGGCCGTCCACATCCAGGG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKSASWS*GRPHPG
Trigger: CCCTGGATGTGGACGGCCGCACGACCAAGAAGCTGA...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACTGCGTGGCAATGTATaGATTCTGCCGCCGGTAGCC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTLRGNV*ILPPVA
Trigger: GGCTACCGGCGGCAGAATGCATACATTGCCACGCAG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACATCAGGCAGGGGCCCCTaGGTGGCAATGTATGCATTC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTSGRGP*VAMYAF
Trigger: GAATGCATACATTGCCACGCAGGGGCCCCTGCCTGA...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGACTCTTCGCAGGAATaGCAGGAAGGGCGTGGGGTA +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRDSSQE*QEGRGV
Trigger: TACCCCACGCCCTTCCTGGCATTCCTGCGAAGAGTC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTCGCCCACCGAGTTCTaGGCCACACACTCGTACACG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKSPTEF*ATHSYT
Trigger: CGTGTACGAGTGTGTGGCCCAGAACTCGGTGGGCGA...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGCCCGTTGCTGGCACTaGGGTCCACAGGCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRARCWH*GPQAGS
Trigger: ACTTCCTGCCTGTGGACCCCAGTGCCAGCAACGGGC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACTCGTACTTGCCCTaGTCTGTCTCCTCGCTGCTC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTHSYLP*SVSSLL
Trigger: GAGCAGCGAGGAGACAGACCAGGGCAAGTACGAGTG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCTCGCACGTAGAGGTTaGCAGGTGATGAGTAGCGCA +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSLARRG*QVMSSA
Trigger: TGCGCTACTCATCACCTGCCAACCTCTACGTGCGAG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGGCTCATGGGCAGGATaGAGAAGCGTGGGGCCACAC +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPGSWAG*RSVGPH
Trigger: GTGTGGCCCCACGCTTCTCCATCCTGCCCATGAGCC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGGCATGATCTCGTaGCTCATGGGCAGGATGGAG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKPGMIS*LMGRME
Trigger: CTCCATCCTGCCCATGAGCCACGAGATCATGCCCGG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCATTCCTGGGAGCGCTaGCTGGTGCCTGCTCACCTG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPHSWER*LVPAHL
Trigger: CAGGTGAGCAGGCACCAGCCAGCGCTCCCAGGAATG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAACACGGATCAGGCCATTaGGCTCCACAGGCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKHGSGH*APQAPP
Trigger: GGGAGGAGCCTGTGGAGCCCAATGGCCTGATCCGTG...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGCTGGGTCTTGACCTaGATGGGGTCTGACAGTGGT +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPCWVLT*MGSDSG
Trigger: ACCACTGTCAGACCCCATCCAGGTCAAGACCCAGCA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCAGCCCGCAAGTTCATaGGCTGGCCAGGAACTCCCT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKQPASS*AGQELP
Trigger: AGGGAGTTCCTGGCCAGCCCATGAACTTGCGGGCTG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGACGAGAGCCCAATGCTaGTCTCTGACTTGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPTRAQC*SLTWPQ
Trigger: CTGAGGCCAAGTCAGAGACCAGCATTGGGCTCTCGT...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGCCAACTTACCAATATaGCCGTGGAGCGCAAGCTGG +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSANLPI*PWSASW
Trigger: CCAGCTTGCGCTCCACGGCCATATTGGTAAGTTGGC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGCCCGTTGTGAGTTTCTaGCGGTGGCGGGCGCCAACT +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRPVVSF*RWRAPT
Trigger: AGTTGGCGCCCGCCACCGCCAGAAACTCACAACGGG...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCCAGAAGGATCTGAGTaGTGGTCGGGGGTATGTTGT +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTPEGSE*WSGVCC
Trigger: ACAACATACCCCCGACCACCACTCAGATCCTTCTGG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACCAGCACTGCTCCCTTaGTCACCACCACCTTCGGTT +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTPALLP*SPPPSV
Trigger: AACCGAAGGTGGTGGTGACCAAGGGAGCAGTGCTGG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGTGGCTGAGCATACCTaGTGTCTGGAAGTTGATGCG +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTVAEHT*CLEVDA
Trigger: CGCATCAACTTCCAGACACCAGGTATGCTCAGCCAC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGATGGACTCGTACTCCTaGGAGAGCTTCAGGCTGTCG +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPMDSYS*ESFRLS
Trigger: CGACAGCCTGAAGCTCTCCCAGGAGTACGAGTCCAT...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGCTGGCCAGTACTGGTaGCACTTTTCCCGGCCCATT +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTAGQYW*HFSRPI
Trigger: AATGGGCCGGGAAAAGTGCCACCAGTACTGGCCAGC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTCGGCTGGCCAGTACTaGTGGCACTTTTCCCGGCCC +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPSAGQY*WHFSRP
Trigger: GGGCCGGGAAAAGTGCCACCAGTACTGGCCAGCCGA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTCGGCTGGCCAGTACTaGTGGCACTTTTCCCGGCCC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRSAGQY*WHFSRP
Trigger: GGGCCGGGAAAAGTGCCACCAGTACTGGCCAGCCGA...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTTGCAGTGCACTGAGATaGGTCCGTCCTGGCCAAACT +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSCSALR*VRPGQT
Trigger: AGTTTGGCCAGGACGGACCCATCTCAGTGCACTGCA...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGGTCTCGAAGCGCTGTaGGTTCACTTTCTTGCCCTT +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSGLEAL*VHFLAL
Trigger: AAGGGCAAGAAAGTGAACTCACAGCGCTTCGAGACC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAACTCCCTGCTGGGTCTTaGCCTGGATGGGGTCTGACA +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTELPAGS*PGWGLT
Trigger: TGTCAGACCCCATCCAGGTCAAGACCCAGCAGGGAG...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCTCCCTGCTGGGTCTTaGCCTGGATGGGGTCTGACA +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPLPAGS*PGWGLT
Trigger: TGTCAGACCCCATCCAGGTCAAGACCCAGCAGGGAG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGGGAGATGTCCTGGATaGGCTCCTCCAGATCCATGT +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTGRCPG*APPDPC
Trigger: ACATGGATCTGGAGGAGCTCATCCAGGACATCTCCC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCAGCTGGAAGGGGTCTaGGAAGGGACTGGCTGCAAA +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKQLEGV*EGTGCK
Trigger: TTTGCAGCCAGTCCCTTCTCAGACCCCTTCCAGCTG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCTGGTGTCTGGAAGTTaGTGCGTCGCATTTCCACAG +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSLVSGS*CVAFPQ
Trigger: CTGTGGAAATGCGACGCATCAACTTCCAGACACCAG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACATCGAATGTTCCCACGTaGATTGCTGCCCGGGGTCAA +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTSNVPT*IAARGQ
Trigger: TTGACCCCGGGCAGCAATTCACGTGGGAACATTCGA...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCCAGTCGCGTCATCATaGCCACAGTGGCCGATCGCT +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPPVASS*PQWPIA
Trigger: AGCGATCGGCCACTGTGGTCATGATGACGCGACTGG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGAACTGGCGAGCCTCTTaGACTCAAGCTCCATGCCCG +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKNWRAS*TQAPCP
Trigger: CGGGCATGGAGCTTGAGTTCAAGAGGCTCGCCAGTT...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGGTCTGTCTCCTCGCTaGTCTCAATCTGCAGGGCAC +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKGLSPR*SQSAGH
Trigger: GTGCCCTGCAGATTGAGAGCAGCGAGGAGACAGACC...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCACAGGCTCCTCCCACTaGACGATCATGGTGGTGGCG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPTGSSH*TIMVVA
Trigger: CGCCACCACCATGATCGTGCAGTGGGAGGAGCCTGT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCTCCACATTGTGTTTCTaGCAGTTGCCCACTGGGTGT +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTSTLCF*QLPTGC
Trigger: ACACCCAGTGGGCAACTGGCAGAAACACAATGTGGA...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAACGTCTTCCAGCAGGCTaGCCACAGTGGTCAGGAGAC +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTERLPAG*PQWSGD
Trigger: GTCTCCTGACCACTGTGGGCAGCCTGCTGGAAGACG...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAACTCTCCTGTCGTGGTaGACTCCACGAGAGCCCAAT +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTTLLSW*TPREPN
Trigger: ATTGGGCTCTCGTGGAGTGCACCACGACAGGAGAGT...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAACCTCGGCACCCTCCATaGGCACATAGTGGACCTGGT +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEPRHPP*AHSGPG
Trigger: ACCAGGTCCACTATGTGCGCATGGAGGGTGCCGAGG...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR GCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAACCACCACCTTCGGTTTaGTGCGAGCGCCATCGCCTT +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEPPPSV*CERHRL
Trigger: AAGGCGATGGCGCTCGCAGCAAACCGAAGGTGGTGG...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR GCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTCAGCTTCTTGGTCGTaGGGCCGTCCACATCCAGGG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPSASWS*GRPHPG
Trigger: CCCTGGATGTGGACGGCCGCACGACCAAGAAGCTGA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTTCAGTAAGCATTTGGTaGGGGGCTCTGAGTCCTTGC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSSVSIW*GALSPC
Trigger: GCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGA...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCTTGAGTCTCTCCATGTaGTCCGCCATGTCTGTGATG +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTLSLSM*SAMSVM
Trigger: CATCACAGACATGGCGGAGCACATGGAGAGACTCAA...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGACTCTTCGCAGGAATaGCAGGAAGGGCGTGGGGTA +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKDSSQE*QEGRGV
Trigger: TACCCCACGCCCTTCCTGGCATTCCTGCGAAGAGTC...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTCCTCTGTGGTCTCTaGCAGTGGCCCCTGTGTTGC +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEVLCGL*QWPLCC
Trigger: GCAACACAGGGGCCACTGGCAGAGACCACAGAGGAC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAAAGCCAGGAGGCAGCTaGTCCTCTCGAAGGACGGTG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEKPGGS*SSRRTV
Trigger: CACCGTCCTTCGAGAGGACCAGCTGCCTCCTGGCTT...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCAAGCCAGGAGGCAGCTaGTCCTCTCGAAGGACGGTG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPKPGGS*SSRRTV
Trigger: CACCGTCCTTCGAGAGGACCAGCTGCCTCCTGGCTT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGCACCCCAGCGCTGTTaGTGGCCACACACTCGTACT +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPAPQRC*WPHTRT
Trigger: AGTACGAGTGTGTGGCCACCAACAGCGCTGGGGTGC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCACCCCAGCGCTGTTaGTGGCCACACACTCGTACT +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEAPQRC*WPHTRT
Trigger: AGTACGAGTGTGTGGCCACCAACAGCGCTGGGGTGC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAACCGGGCATGATCTCGTaGCTCATGGGCAGGATGGAG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEPGMIS*LMGRME
Trigger: CTCCATCCTGCCCATGAGCCACGAGATCATGCCCGG...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCGATCACACCCAGGCTaGACATGGCCACACAAGTGT +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRRSHPG*TWPHKC
Trigger: ACACTTGTGTGGCCATGTCCAGCCTGGGTGTGATCG...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTTCTCATACTCAGAATTaGGGCTCAGGCCTCCGATGC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSSHTQN*GSGLRC
Trigger: GCATCGGAGGCCTGAGCCCCAATTCTGAGTATGAGA...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCTCATACTCAGAATTaGGGCTCAGGCCTCCGATGC +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPSHTQN*GSGLRC
Trigger: GCATCGGAGGCCTGAGCCCCAATTCTGAGTATGAGA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGCTGCCAGTTGCCCACTaGGTGTTCCGGCTCCATGGT +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRLPVAH*VFRLHG
Trigger: ACCATGGAGCCGGAACACCCAGTGGGCAACTGGCAG...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGTCCTTGATGCGCGGTaGCCCGCGGGCCTCGGCACC +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKVLDAR*PAGLGT
Trigger: GGTGCCGAGGCCCGCGGGCCACCGCGCATCAAGGAC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGACATAGCGGTGGCCTaGCTCCAAGCCCCTGTTGTC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRDIAVA*LQAPVV
Trigger: GACAACAGGGGCTTGGAGCCAGGCCACCGCTATGTC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGGTTCTTGGGCTTGTTaGCCTCCAGGTTCGAATGTT +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTGSWAC*PPGSNV
Trigger: AACATTCGAACCTGGAGGCCAACAAGCCCAAGAACC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAATGCAGTGGACCACAATaGGGCCAGCATCAGGCGGGT +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKCSGPQ*GQHQAG
Trigger: ACCCGCCTGATGCTGGCCCCATTGTGGTCCACTGCA...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGCTGGCCAGTACTGGTaGCACTTTTCCCGGCCCATT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKAGQYW*HFSRPI
Trigger: AATGGGCCGGGAAAAGTGCCACCAGTACTGGCCAGC...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTAGCACCTTCACTGTCTaGAAAATGTCCACCACGCCC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSSTFTV*KMSTTP
Trigger: GGGCGTGGTGGACATTTTCCAGACAGTGAAGGTGCT...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCTATTCCAAAGCCGCCTaGAAGCAGAACTGGTACTCG +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTYSKAA*KQNWYS
Trigger: CGAGTACCAGTTCTGCTTCCAGGCGGCTTTGGAATA...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCAGTTCTTTGGGGAGATaGCCTGCAGCGTGCGCTGGC +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPSSLGR*PAACAG
Trigger: GCCAGCGCACGCTGCAGGCCATCTCCCCAAAGAACT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGAGTTCTTTGGGGAGATaGCCTGCAGCGTGCGCTGGC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRSSLGR*PAACAG
Trigger: GCCAGCGCACGCTGCAGGCCATCTCCCCAAAGAACT...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTACGGTGAGCTTTGCATaGATTGTGATTTCGCCCACC +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSTVSFA*IVISPT
Trigger: GGTGGGCGAAATCACAATTCATGCAAAGCTCACCGT...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCTGGCCAATGGAGTTaGCAGCTGACACCCAGATCT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKPGQWS*QLTPRS
Trigger: AGATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCTTGTAGGGTGTGGGTaGGTTATAGTTGTCGGGGAA +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSLVGCG*VIVVGE
Trigger: TTCCCCGACAACTATAACTCACCCACACCCTACAAG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGCTTGTAGGGTGTGGGTaGGTTATAGTTGTCGGGGAA +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPLVGCG*VIVVGE
Trigger: TTCCCCGACAACTATAACTCACCCACACCCTACAAG...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGTGGGACCATCACAATaGAGTAGTTCTGCACGGTCA +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSVGPSQ*SSSARS
Trigger: TGACCGTGCAGAACTACTTCATTGTGATGGTCCCAC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGTGGGACCATCACAATaGAGTAGTTCTGCACGGTCA +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPVGPSQ*SSSARS
Trigger: TGACCGTGCAGAACTACTTCATTGTGATGGTCCCAC...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGCAGCTGGAAGGGGTCTaGGAAGGGACTGGCTGCAAA +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRQLEGV*EGTGCK
Trigger: TTTGCAGCCAGTCCCTTCTCAGACCCCTTCCAGCTG...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGCTGTCGTTGGCTTTaGGTCTCTCCATGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEGCRWL*VSPCAP
Trigger: CGGAGCACATGGAGAGACTCAAAGCCAACGACAGCC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGGCTGTCGTTGGCTTTaGGTCTCTCCATGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRGCRWL*VSPCAP
Trigger: CGGAGCACATGGAGAGACTCAAAGCCAACGACAGCC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCTAGGGGCTGCAGGATaGCTCGTGAGTGGTCATAGG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPLGAAG*LVSGHR
Trigger: CCTATGACCACTCACGAGTCATCCTGCAGCCCCTAG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGCGGGTTGCAGGTCTTaGCTCTTCGCAGGAATGCCA +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKAGCRS*LFAGMP
Trigger: TGGCATTCCTGCGAAGAGTCAAGACCTGCAACCCGC...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGCAGCGCCTCGTGGATaGAGCCATACTGATCCTCTG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPAAPRG*SHTDPL
Trigger: CAGAGGATCAGTATGGCTTCATCCACGAGGCGCTGC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGAGAGCATGGTGGCTGTaGGTGTGCGCTCTACAACCT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKRAWWL*VCALQP
Trigger: AGGTTGTAGAGCGCACACGCACAGCCACCATGCTCT...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGGTCTGTCTCCTCGCTaGTCTCAATCTGCAGGGCAC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRGLSPR*SQSAGH
Trigger: GTGCCCTGCAGATTGAGAGCAGCGAGGAGACAGACC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTGTGTTTCTGCCAGTTaGCCACTGGGTGTTCCGGCT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKCVSAS*PLGVPA
Trigger: AGCCGGAACACCCAGTGGGCAACTGGCAGAAACACA...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCCACATTGTGTTTCTaGCAGTTGCCCACTGGGTGT +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPSTLCF*QLPTGC
Trigger: ACACCCAGTGGGCAACTGGCAGAAACACAATGTGGA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTCCACGAGAGCCCAATaGTGGTCTCTGACTTGGCCT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKSTRAQ*WSLTWP
Trigger: AGGCCAAGTCAGAGACCAGCATTGGGCTCTCGTGGA...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAATCCCACGTGAATTGCTaGCCGGGGTCAATGGACTCG +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKSHVNC*PGSMDS
Trigger: CGAGTCCATTGACCCCGGGCAGCAATTCACGTGGGA...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTCCCACGTGAATTGCTaGCCGGGGTCAATGGACTCG +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRSHVNC*PGSMDS
Trigger: CGAGTCCATTGACCCCGGGCAGCAATTCACGTGGGA...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTCAGGCAGGGGCCCCTaGGTGGCAATGTATGCATTC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRSGRGP*VAMYAF
Trigger: GAATGCATACATTGCCACGCAGGGGCCCCTGCCTGA...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGACTCTTCGCAGGAATaGCAGGAAGGGCGTGGGGTA +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKDSSQE*QEGRGV
Trigger: TACCCCACGCCCTTCCTGGCATTCCTGCGAAGAGTC...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCAGCACAGAGCATGGTaGCTGTGCGTGTGCGCTCTA +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPQHRAW*LCVCAL
Trigger: TAGAGCGCACACGCACAGCCACCATGCTCTGTGCTG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCGATCACACCCAGGCTaGACATGGCCACACAAGTGT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKRSHPG*TWPHKC
Trigger: ACACTTGTGTGGCCATGTCCAGCCTGGGTGTGATCG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTTCTCATACTCAGAATTaGGGCTCAGGCCTCCGATGC +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRSHTQN*GSGLRC
Trigger: GCATCGGAGGCCTGAGCCCCAATTCTGAGTATGAGA...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAATCACTGGGAGGGCCCTaGCCAATGGAGTTGACAGCT +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTESLGGP*PMELTA
Trigger: AGCTGTCAACTCCATTGGCCAGGGCCCTCCCAGTGA...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTGTTGTTCACCTCCTTaGGGTCCGGGTCCTCTGAGC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRCCSPP*GPGPLS
Trigger: GCTCAGAGGACCCGGACCCCAAGGAGGTGAACAACA...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAAGCCGGGAGATGTCCTaGATGAGCTCCTCCAGATCC +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKSREMS*MSSSRS
Trigger: GGATCTGGAGGAGCTCATCCAGGACATCTCCCGGCT...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAAGCCGGGAGATGTCCTaGATGAGCTCCTCCAGATCC +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTESREMS*MSSSRS
Trigger: GGATCTGGAGGAGCTCATCCAGGACATCTCCCGGCT...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGCCATGCCGTGAACTaGAAATGTCGCACCTCACGC +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEGHAVN*KCRTSR
Trigger: GCGTGAGGTGCGACATTTCCAGTTCACGGCATGGCC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGGCCATGCCGTGAACTaGAAATGTCGCACCTCACGC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRGHAVN*KCRTSR
Trigger: GCGTGAGGTGCGACATTTCCAGTTCACGGCATGGCC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR CAA 72 bp TCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTaGGATATCCCCCAAGTGTCCCGTAGTCCCAGGTCC +
Preference number: 4 (lower is better)
Translates to: SPTKRDLSCSRG*DIPQVSRSPRS
Trigger: GGACCTGGGACTACGGGACACTTGGGGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGCTTTGCATGAATTGTaGTTTCGCCCACCGAGTTCT +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSALHEL*FRPPSS
Trigger: AGAACTCGGTGGGCGAAATCACAATTCATGCAAAGC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGCTTTGCATGAATTGTaGTTTCGCCCACCGAGTTCT +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPALHEL*FRPPSS
Trigger: AGAACTCGGTGGGCGAAATCACAATTCATGCAAAGC...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTACGGTGAGCTTTGCATaGATTGTGATTTCGCCCACC +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRTVSFA*IVISPT
Trigger: GGTGGGCGAAATCACAATTCATGCAAAGCTCACCGT...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAACCTGGCCAATGGAGTTaGCAGCTGACACCCAGATCT +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKPGQWS*QLTPRS
Trigger: AGATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGG...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAACTCCGTATTGGGCTTaGGGTCCTCCACCACAAAGG +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKTPYWA*GPPPQR
Trigger: CCTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGT...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGCCAGCTCAGCAGCACTaGAGTCTTCATGATCATCTT +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPPAQQH*SLHDHL
Trigger: AAGATGATCATGAAGACTTCAGTGCTGCTGAGCTGG...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCTTGTAGGGTGTGGGTaGGTTATAGTTGTCGGGGAA +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRLVGCG*VIVVGE
Trigger: TTCCCCGACAACTATAACTCACCCACACCCTACAAG...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGGAGATGTCCTGGATaGGCTCCTCCAGATCCATGT +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEGRCPG*APPDPC
Trigger: ACATGGATCTGGAGGAGCTCATCCAGGACATCTCCC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTCGAATGTTCCCACGTaGATTGCTGCCCGGGGTCAA +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPSNVPT*IAARGQ
Trigger: TTGACCCCGGGCAGCAATTCACGTGGGAACATTCGA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGGCGCTGCAGTGCACTaGGATGGGTCCGTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKGAAVH*DGSVLA
Trigger: GGCCAGGACGGACCCATCTCAGTGCACTGCAGCGCC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCAAGGACGGTGAGCTTTaGATGAATTGTGATTTCGCC +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTKDGEL*MNCDFA
Trigger: GGCGAAATCACAATTCATGCAAAGCTCACCGTCCTT...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCACTCTCCTGTCGTGGTaGACTCCACGAGAGCCCAAT +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPTLLSW*TPREPN
Trigger: ATTGGGCTCTCGTGGAGTGCACCACGACAGGAGAGT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACGCAGGCTGCGCCTCTaGAGCCGGGAGATGTCCTGG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKRRLRL*SREMSW
Trigger: CCAGGACATCTCCCGGCTGCAGAGGCGCAGCCTGCG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCAAAGCCACCATATTaGTTCTGGTTCCCAGGATGG +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPSKPPY*FWFPGW
Trigger: CCATCCTGGGAACCAGAAGCAATATGGTGGCTTTGA...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGTAGGCTCATTCTTCTaGAACACAGCAAGCACAAAG +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTVGSFF*NTASTK
Trigger: CTTTGTGCTTGCTGTGTTGCAGAAGAATGAGCCTAC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCTGGCATGTTATACTCTaGCATCGGGTCAACCACAAA +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTWHVIL*HRVNHK
Trigger: TTTGTGGTTGACCCGATGGCAGAGTATAACATGCCA...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCGATCACACCCAGGCTaGACATGGCCACACAAGTGT +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPRSHPG*TWPHKC
Trigger: ACACTTGTGTGGCCATGTCCAGCCTGGGTGTGATCG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAACGAGAGCCCAATGCTaGTCTCTGACTTGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKTRAQC*SLTWPQ
Trigger: CTGAGGCCAAGTCAGAGACCAGCATTGGGCTCTCGT...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCTCGAGACTTCCGAAGTaGGACCATCACAATGAAGTA +
Preference number: 4 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTSRLPK*DHHNEV
Trigger: TACTTCATTGTGATGGTCCCACTTCGGAAGTCTCGA...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGCCACCATATTGCTTCTaGTTCCCAGGATGGAAGACA +
Preference number: 4 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPPPYCF*FPGWKT
Trigger: TGTCTTCCATCCTGGGAACCAGAAGCAATATGGTGG...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTTGTTCAGTAAGCATTTaGTGCGGGGCTCTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRCSVSI*CGALSP
Trigger: AGGACTCAGAGCCCCGCACCAAATGCTTACTGAACA...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAATGGACTCGTACTCCTaGGAGAGCTTCAGGCTGTCG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEMDSYS*ESFRLS
Trigger: CGACAGCCTGAAGCTCTCCCAGGAGTACGAGTCCAT...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGGTTCTTGGGCTTGTTaGCCTCCAGGTTCGAATGTT +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTGSWAC*PPGSNV
Trigger: AACATTCGAACCTGGAGGCCAACAAGCCCAAGAACC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGGTTCTTGGGCTTGTTaGCCTCCAGGTTCGAATGTT +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRGSWAC*PPGSNV
Trigger: AACATTCGAACCTGGAGGCCAACAAGCCCAAGAACC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTGTGGTCTCTGCCAGTaGCCCCTGTGTTGCAATGTA +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKCGLCQ*PLCCNV
Trigger: TACATTGCAACACAGGGGCCACTGGCAGAGACCACA...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAATGCAGTGCACTGAGATaGGTCCGTCCTGGCCAAACT +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTECSALR*VRPGQT
Trigger: AGTTTGGCCAGGACGGACCCATCTCAGTGCACTGCA...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGAGCACCTTCACTGTCTaGAAAATGTCCACCACGCCC +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKSTFTV*KMSTTP
Trigger: GGGCGTGGTGGACATTTTCCAGACAGTGAAGGTGCT...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTTATTCCAAAGCCGCCTaGAAGCAGAACTGGTACTCG +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRYSKAA*KQNWYS
Trigger: CGAGTACCAGTTCTGCTTCCAGGCGGCTTTGGAATA...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCACCTTGAAGTTCTTTaGGGAGATGGCCTGCAGCGT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKHLEVL*GDGLQR
Trigger: ACGCTGCAGGCCATCTCCCCAAAGAACTTCAAGGTG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086828.10
ENSMUST00000223859.2
3UTR CAA 72 bp AGTACTGACCCACTCTCCTACAAAGAGAGACCTCAGTaGCTCCAGGGGGTTGGATATCCCCCAAGTGTCCCG +
Preference number: 4 (lower is better)
Translates to: STDPLSYKERPQ*LQGVGYPPSVP
Trigger: CGGGACACTTGGGGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTCAGTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGGTCTCGAAGCGCTGTaGGTTCACTTTCTTGCCCTT +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRGLEAL*VHFLAL
Trigger: AAGGGCAAGAAAGTGAACTCACAGCGCTTCGAGACC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTACAAGTGTAGTTAGCTaGGTCCTTGACATCCGTGAG +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRTSVVS*VLDIRE
Trigger: CTCACGGATGTCAAGGACTCAGCTAACTACACTTGT...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAAATGGAGTTGACAGCTaGCACCCAGATCTCATACTC +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTNGVDS*HPDLIL
Trigger: GAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATT...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGCGTCCACATCCAGGGTaGGCCCATTGTACTGAATCT +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRRPHPG*AHCTES
Trigger: AGATTCAGTACAATGGGCTCACCCTGGATGTGGACG...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAACGTCCACATCCAGGGTaGGCCCATTGTACTGAATCT +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKRPHPG*AHCTES
Trigger: AGATTCAGTACAATGGGCTCACCCTGGATGTGGACG...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAACTGGTGTCTGGAAGTTaGTGCGTCGCATTTCCACAG +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKLVSGS*CVAFPQ
Trigger: CTGTGGAAATGCGACGCATCAACTTCCAGACACCAG...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGCTGGTGTCTGGAAGTTaGTGCGTCGCATTTCCACAG +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRLVSGS*CVAFPQ
Trigger: CTGTGGAAATGCGACGCATCAACTTCCAGACACCAG...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAATTTGGTGCGGGGCTCTaGGTCCTTGCGTTTGTTCTT +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKFGAGL*VLAFVL
Trigger: AAGAACAAACGCAAGGACTCAGAGCCCCGCACCAAA...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTCAGTAAGCATTTGGTaGGGGGCTCTGAGTCCTTGC +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPSVSIW*GALSPC
Trigger: GCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTTGGCATGTTATACTCTaGCATCGGGTCAACCACAAA +
Preference number: 4 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSWHVIL*HRVNHK
Trigger: TTTGTGGTTGACCCGATGGCAGAGTATAACATGCCA...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATCCAGCTGTCTGGAGTaGCGCAGGCTGCGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKSSCLE*RRLRLC
Trigger: GCAGAGGCGCAGCCTGCGCCACTCCAGACAGCTGGA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAATTCTGGTTCCCAGGATaGAAGACAGCTGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEFWFPG*KTAGRM
Trigger: CATCCTGCCAGCTGTCTTCCATCCTGGGAACCAGAA...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTTCTGGTTCCCAGGATaGAAGACAGCTGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPFWFPG*KTAGRM
Trigger: CATCCTGCCAGCTGTCTTCCATCCTGGGAACCAGAA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTGTTCAGTAAGCATTTaGTGCGGGGCTCTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKCSVSI*CGALSP
Trigger: AGGACTCAGAGCCCCGCACCAAATGCTTACTGAACA...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTGGCTGAGCATACCTaGTGTCTGGAAGTTGATGCG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEVAEHT*CLEVDA
Trigger: CGCATCAACTTCCAGACACCAGGTATGCTCAGCCAC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAATGTGGTCTCTGCCAGTaGCCCCTGTGTTGCAATGTA +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTECGLCQ*PLCCNV
Trigger: TACATTGCAACACAGGGGCCACTGGCAGAGACCACA...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAACACCTTGAAGTTCTTTaGGGAGATGGCCTGCAGCGT +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEHLEVL*GDGLQR
Trigger: ACGCTGCAGGCCATCTCCCCAAAGAACTTCAAGGTG...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGCTTTGCATGAATTGTaGTTTCGCCCACCGAGTTCT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKALHEL*FRPPSS
Trigger: AGAACTCGGTGGGCGAAATCACAATTCATGCAAAGC...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGATGTCTTCTTTGATCTaGTACGGCCCATCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKMSSLI*YGPSWL
Trigger: AAGCCAGGATGGGCCGTATCAGATCAAAGAAGACAT...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGTGGGACCATCACAATaGAGTAGTTCTGCACGGTCA +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKVGPSQ*SSSARS
Trigger: TGACCGTGCAGAACTACTTCATTGTGATGGTCCCAC...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGTAGGCTCATTCTTCTaGAACACAGCAAGCACAAAG +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRVGSFF*NTASTK
Trigger: CTTTGTGCTTGCTGTGTTGCAGAAGAATGAGCCTAC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTTGGCATGTTATACTCTaGCATCGGGTCAACCACAAA +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRWHVIL*HRVNHK
Trigger: TTTGTGGTTGACCCGATGGCAGAGTATAACATGCCA...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGGGGCTCTGAGTCCTTaGGTTTGTTCTTGTACAGCA +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKGALSP*VCSCTA
Trigger: TGCTGTACAAGAACAAACGCAAGGACTCAGAGCCCC...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGGCTCATGGGCAGGATaGAGAAGCGTGGGGCCACAC +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKGSWAG*RSVGPH
Trigger: GTGTGGCCCCACGCTTCTCCATCCTGCCCATGAGCC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACATTCCTGGGAGCGCTaGCTGGTGCCTGCTCACCTG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKHSWER*LVPAHL
Trigger: CAGGTGAGCAGGCACCAGCCAGCGCTCCCAGGAATG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTGTTCAGTAAGCATTTaGTGCGGGGCTCTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPCSVSI*CGALSP
Trigger: AGGACTCAGAGCCCCGCACCAAATGCTTACTGAACA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAATCTAGTAGGGTGACCTaGATGAAGCCGTATGTCTCG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTESSRVT*MKPYVS
Trigger: CGAGACATACGGCTTCATCCAGGTCACCCTACTAGA...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTCTAGTAGGGTGACCTaGATGAAGCCGTATGTCTCG +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRSSRVT*MKPYVS
Trigger: CGAGACATACGGCTTCATCCAGGTCACCCTACTAGA...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTCTAGTAGGGTGACCTaGATGAAGCCGTATGTCTCG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPSSRVT*MKPYVS
Trigger: CGAGACATACGGCTTCATCCAGGTCACCCTACTAGA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTATTCCAAAGCCGCCTaGAAGCAGAACTGGTACTCG +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRYSKAA*KQNWYS
Trigger: CGAGTACCAGTTCTGCTTCCAGGCGGCTTTGGAATA...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACATTCCCACCGGGCATaGTCTCGTGGCTCATGGGCA +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKHSHRA*SRGSWA
Trigger: TGCCCATGAGCCACGAGATCATGCCCGGTGGGAATG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAACAAGTGTAGTTAGCTaGGTCCTTGACATCCGTGAG +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTETSVVS*VLDIRE
Trigger: CTCACGGATGTCAAGGACTCAGCTAACTACACTTGT...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAATGTCTTCTTTGATCTaGTACGGCCCATCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEMSSLI*YGPSWL
Trigger: AAGCCAGGATGGGCCGTATCAGATCAAAGAAGACAT...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCATGTCTTCTTTGATCTaGTACGGCCCATCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPMSSLI*YGPSWL
Trigger: AAGCCAGGATGGGCCGTATCAGATCAAAGAAGACAT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGAATGGAGTTGACAGCTaGCACCCAGATCTCATACTC +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRNGVDS*HPDLIL
Trigger: GAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATT...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAAATGGAGTTGACAGCTaGCACCCAGATCTCATACTC +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKNGVDS*HPDLIL
Trigger: GAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATT...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACCCAATGCTGGTCTCTaGCTTGGCCTCAGCCCGCAA +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKPNAGL*LGLSPQ
Trigger: TTGCGGGCTGAGGCCAAGTCAGAGACCAGCATTGGG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCCAGCTCAGCAGCACTaGAGTCTTCATGATCATCTT +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPPAQQH*SLHDHL
Trigger: AAGATGATCATGAAGACTTCAGTGCTGCTGAGCTGG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAACCAGCTCAGCAGCACTaGAGTCTTCATGATCATCTT +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKPAQQH*SLHDHL
Trigger: AAGATGATCATGAAGACTTCAGTGCTGCTGAGCTGG...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGGATGGGTGGGTGGCTaGGCATACCTGGTGTCTGGA +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKGWVGG*AYLVSG
Trigger: TCCAGACACCAGGTATGCTCAGCCACCCACCCATCC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAACAGGCTCCTCCCACTaGACGATCATGGTGGTGGCG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKTGSSH*TIMVVA
Trigger: CGCCACCACCATGATCGTGCAGTGGGAGGAGCCTGT...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTCAAAGCCACCATATTaGTTCTGGTTCCCAGGATGG +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRSKPPY*FWFPGW
Trigger: CCATCCTGGGAACCAGAAGCAATATGGTGGCTTTGA...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGTCCTCTGTGGTCTCTaGCAGTGGCCCCTGTGTTGC +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKVLCGL*QWPLCC
Trigger: GCAACACAGGGGCCACTGGCAGAGACCACAGAGGAC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATCGCCCACCGAGTTCTaGGCCACACACTCGTACACG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKSPTEF*ATHSYT
Trigger: CGTGTACGAGTGTGTGGCCCAGAACTCGGTGGGCGA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACGCAAGTTCATGGGCTaGCCAGGAACTCCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKRKFMG*PGTPCW
Trigger: CCAGCAGGGAGTTCCTGGCCAGCCCATGAACTTGCG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTATTATAGAAGGTGTGTaGCTTGAGGTGTGTGATCAG +
Preference number: 4 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRIIEGV*LEVCDQ
Trigger: CTGATCACACACCTCAAGCCACACACCTTCTATAAT...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAATTATAGAAGGTGTGTaGCTTGAGGTGTGTGATCAG +
Preference number: 4 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTIIEGV*LEVCDQ
Trigger: CTGATCACACACCTCAAGCCACACACCTTCTATAAT...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTCGAGACTTCCGAAGTaGGACCATCACAATGAAGTA +
Preference number: 4 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKSRLPK*DHHNEV
Trigger: TACTTCATTGTGATGGTCCCACTTCGGAAGTCTCGA...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCCACCATATTGCTTCTaGTTCCCAGGATGGAAGACA +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPPPYCF*FPGWKT
Trigger: TGTCTTCCATCCTGGGAACCAGAAGCAATATGGTGG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACAGCTGGAAGGGGTCTaGGAAGGGACTGGCTGCAAA +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKQLEGV*EGTGCK
Trigger: TTTGCAGCCAGTCCCTTCTCAGACCCCTTCCAGCTG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGGCTGTCGTTGGCTTTaGGTCTCTCCATGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKGCRWL*VSPCAP
Trigger: CGGAGCACATGGAGAGACTCAAAGCCAACGACAGCC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAAAGGACGGTGAGCTTTaGATGAATTGTGATTTCGCC +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKKDGEL*MNCDFA
Trigger: GGCGAAATCACAATTCATGCAAAGCTCACCGTCCTT...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACCACCTTCGGTTTGCTaGGAGCGCCATCGCCTTTCA +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKPPSVC*ERHRLS
Trigger: TGAAAGGCGATGGCGCTCGCAGCAAACCGAAGGTGG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR GCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACTGCGTGGCAATGTATaGATTCTGCCGCCGGTAGCC +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKLRGNV*ILPPVA
Trigger: GGCTACCGGCGGCAGAATGCATACATTGCCACGCAG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATCAGGCAGGGGCCCCTaGGTGGCAATGTATGCATTC +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKSGRGP*VAMYAF
Trigger: GAATGCATACATTGCCACGCAGGGGCCCCTGCCTGA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACAGCACAGAGCATGGTaGCTGTGCGTGTGCGCTCTA +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKQHRAW*LCVCAL
Trigger: TAGAGCGCACACGCACAGCCACCATGCTCTGTGCTG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGAATCTTGTAGGGTGTaGGTGAGTTATAGTTGTCGG +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKESCRV*VSYSCR
Trigger: CCGACAACTATAACTCACCCACACCCTACAAGATTC...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAATCGAGACTTCCGAAGTaGGACCATCACAATGAAGTA +
Preference number: 4 (lower is better)
Translates to: FTWGWGQCRACGKDAHTESRLPK*DHHNEV
Trigger: TACTTCATTGTGATGGTCCCACTTCGGAAGTCTCGA...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAAGCCGGGAGATGTCCTaGATGAGCTCCTCCAGATCC +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKSREMS*MSSSRS
Trigger: GGATCTGGAGGAGCTCATCCAGGACATCTCCCGGCT...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR TCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAACTCCGTATTGGGCTTaGGGTCCTCCACCACAAAGG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKTPYWA*GPPPQR
Trigger: CCTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGT...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATGTGTTTCTGCCAGTTaGCCACTGGGTGTTCCGGCT +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKCVSAS*PLGVPA
Trigger: AGCCGGAACACCCAGTGGGCAACTGGCAGAAACACA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGCCCATCCTGGCTTTTaGACTTATACTCAATTACGT +
Preference number: 4 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKAHPGF*TYTQLR
Trigger: ACGTAATTGAGTATAAGTCCAAAAGCCAGGATGGGC...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGCCCATCCTGGCTTTTaGACTTATACTCAATTACGT +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRAHPGF*TYTQLR
Trigger: ACGTAATTGAGTATAAGTCCAAAAGCCAGGATGGGC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCATTATAGAAGGTGTGTaGCTTGAGGTGTGTGATCAG +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPIIEGV*LEVCDQ
Trigger: CTGATCACACACCTCAAGCCACACACCTTCTATAAT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAATGGACTCGTACTCCTaGGAGAGCTTCAGGCTGTCG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKMDSYS*ESFRLS
Trigger: CGACAGCCTGAAGCTCTCCCAGGAGTACGAGTCCAT...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCACGCAGAATGTACTGTaGCATGTTATACTCTGCCAT +
Preference number: 4 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPTQNVL*HVILCH
Trigger: ATGGCAGAGTATAACATGCCACAGTACATTCTGCGT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGACGCAGAATGTACTGTaGCATGTTATACTCTGCCAT +
Preference number: 4 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRTQNVL*HVILCH
Trigger: ATGGCAGAGTATAACATGCCACAGTACATTCTGCGT...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATGCAGTGCACTGAGATaGGTCCGTCCTGGCCAAACT +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKCSALR*VRPGQT
Trigger: AGTTTGGCCAGGACGGACCCATCTCAGTGCACTGCA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATTCTGGTTCCCAGGATaGAAGACAGCTGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKFWFPG*KTAGRM
Trigger: CATCCTGCCAGCTGTCTTCCATCCTGGGAACCAGAA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATGTGGTCTCTGCCAGTaGCCCCTGTGTTGCAATGTA +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKCGLCQ*PLCCNV
Trigger: TACATTGCAACACAGGGGCCACTGGCAGAGACCACA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAAGCACCTTCACTGTCTaGAAAATGTCCACCACGCCC +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKSTFTV*KMSTTP
Trigger: GGGCGTGGTGGACATTTTCCAGACAGTGAAGGTGCT...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGAAGGATCTGAGTGGTaGTCGGGGGTATGTTGTTCA +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKEGSEW*SGVCCS
Trigger: TGAACAACATACCCCCGACCACCACTCAGATCCTTC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR GCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATCAAAGCCACCATATTaGTTCTGGTTCCCAGGATGG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKSKPPY*FWFPGW
Trigger: CCATCCTGGGAACCAGAAGCAATATGGTGGCTTTGA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACCACCATATTGCTTCTaGTTCCCAGGATGGAAGACA +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKPPYCF*FPGWKT
Trigger: TGTCTTCCATCCTGGGAACCAGAAGCAATATGGTGG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR GCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGTAGGCTCATTCTTCTaGAACACAGCAAGCACAAAG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKVGSFF*NTASTK
Trigger: CTTTGTGCTTGCTGTGTTGCAGAAGAATGAGCCTAC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CCA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGAATCTTGTAGGGTGTaGGTGAGTTATAGTTGTCGG +
Preference number: 4 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKESCRV*VSYSCR
Trigger: CCGACAACTATAACTCACCCACACCCTACAAGATTC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp CGCCCAACCCCGCGCGGCCCCGCGCTGCCAGCCGGAACACATAGGTaGCGCCCTTGTGTGCAGGCGCCGCGAACCGCCGCTCCCACGCAG +
Preference number: 5 (lower is better)
Translates to: RPTPRGPALPAGTHR*RPCVQAPRTAAPTQ
Trigger: CTGCGTGGGAGCGGCGGTTCGCGGCGCCTGCACACAAGGGCGCCACCTATGTGTTCCGGCTGGCAGCGCGGGGCCGCGCGGGGTTGGGCG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS GCA 90 bp GCACGGGTGGCAGCCAGCGCAGTAGCACGGAGCCCGCGGACACGTTaGCCGCGGCGCCCAAGATCTGCGGGAAGCCGCGCGGAGCGTCCT +
Preference number: 5 (lower is better)
Translates to: ARVAASAVARSPRTR*PRRPRSAGSRAERP
Trigger: AGGACGCTCCGCGCGGCTTCCCGCAGATCTTGGGCGCCGCGGGCAACGTGTCCGCGGGCTCCGTGCTACTGCGCTGGCTGCCACCCGTGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS GCA 90 bp GCGGCCCCGCGCTGCCAGCCGGAACACATAGGTGGCGCCCTTGTGTaGAGGCGCCGCGAACCGCCGCTCCCACGCAGCCAGCTCCAACGT +
Preference number: 5 (lower is better)
Translates to: AAPRCQPEHIGGALV*RRREPPLPRSQLQR
Trigger: ACGTTGGAGCTGGCTGCGTGGGAGCGGCGGTTCGCGGCGCCTGCACACAAGGGCGCCACCTATGTGTTCCGGCTGGCAGCGCGGGGCCGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS GCA 90 bp AGTAGCACGGAGCCCGCGGACACGTTGCCCGCGGCGCCCAAGATCTaGGGGAAGCCGCGCGGAGCGTCCTCGGGGATGCTCAGCGCTGCC +
Preference number: 5 (lower is better)
Translates to: SSTEPADTLPAAPKI*GKPRGASSGMLSAA
Trigger: GGCAGCGCTGAGCATCCCCGAGGACGCTCCGCGCGGCTTCCCGCAGATCTTGGGCGCCGCGGGCAACGTGTCCGCGGGCTCCGTGCTACT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CCA 90 bp GTGCAGGCGCCGCGAACCGCCGCTCCCACGCAGCCAGCTCCAACGTaGCCGGGGCCGCGTCTTCGCGCCCAAACTGCAGGCGGTAGCCAA +
Preference number: 5 (lower is better)
Translates to: VQAPRTAAPTQPAPT*PGPRLRAQTAGGSQ
Trigger: TTGGCTACCGCCTGCAGTTTGGGCGCGAAGACGCGGCCCCGGCCACGTTGGAGCTGGCTGCGTGGGAGCGGCGGTTCGCGGCGCCTGCAC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS-3UTR CAA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCCACGGATCAGGCCATaGGGCTCCACAGGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGPRIRP*GSTGSS
Trigger: GGAGGAGCCTGTGGAGCCCAATGGCCTGATCCGTGG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 90 bp GGTGGTCGGGGGTATGTTGTTCACCTCCTTGGGGTCCGGGTCCTCTaGGCCCAGCGGTCGGTAGCGGACGCTGTAGCCCACGAGGGCCCC +
Preference number: 5 (lower is better)
Translates to: GGRGYVVHLLGVRVL*AQRSVADAVAHEGP
Trigger: GGGGCCCTCGTGGGCTACAGCGTCCGCTACCGACCGCTGGGCTCAGAGGACCCGGACCCCAAGGAGGTGAACAACATACCCCCGACCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS-3UTR CAA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGGCGGGTTGCAGGTCTaGACTCTTCGCAGGAATGCC +
Preference number: 5 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGGGLQV*TLRRNA
Trigger: GGCATTCCTGCGAAGAGTCAAGACCTGCAACCCGCC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCCCAGCATCAGGCGGGTaGCAGGTCTTGACTCTTCGC +
Preference number: 5 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGPASGG*QVLTLR
Trigger: GCGAAGAGTCAAGACCTGCAACCCGCCTGATGCTGG...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS GCA 90 bp GGCGCTGAGCATGCGGGCCTGAACATTCCTGGGAGCGCTGGCTGGTaGCTGCTCACCTGTGCGGGTCACCACCGATTCACTGGGAGGGCC +
Preference number: 5 (lower is better)
Translates to: GAEHAGLNIPGSAGW*LLTCAGHHRFTGRA
Trigger: GGCCCTCCCAGTGAATCGGTGGTGACCCGCACAGGTGAGCAGGCACCAGCCAGCGCTCCCAGGAATGTTCAGGCCCGCATGCTCAGCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp ATCTTCACCTTGAAGTTCTTTGGGGAGATGGCCTGCAGCGTGCGCTaGCGCACGACCGCGGTGAAGGCGCCCAGGCCCTGCGGCGAGCGC +
Preference number: 5 (lower is better)
Translates to: IFTLKFFGEMACSVR*RTTAVKAPRPCGER
Trigger: GCGCTCGCCGCAGGGCCTGGGCGCCTTCACCGCGGTCGTGCGCCAGCGCACGCTGCAGGCCATCTCCCCAAAGAACTTCAAGGTGAAGAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCTTGTGTTTCTGCCAGTaGCCCACTGGGTGTTCCGGC +
Preference number: 5 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGLCFCQ*PTGCSG
Trigger: GCCGGAACACCCAGTGGGCAACTGGCAGAAACACAA...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CCTGTCTCCGCGAAGAGGAGGTCTCCCTGGGCCGCATCCTGCCCAGCGGCGGGCGGGGCGACGCTAGGCTaGCCACTGAGCATGTTAAAG +
Preference number: 5 (lower is better)
Translates to: PVSAKRRSPWAASCPAAGGATLG*PLSMLK
Trigger: CTTTAACATGCTCAGTGGCAAGCCTAGCGTCGCCCC...GCCCGCCGCTGGGCAGGATGCGGCCCAGGGAGACCTCCTCTTCGCGGAGACAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp GGTGGCGCTGAGCATGCGGGCCTGAACATTCCTGGGAGCGCTGGCTaGTGCCTGCTCACCTGTGCGGGTCACCACCGATTCACTGGGAGG +
Preference number: 5 (lower is better)
Translates to: GGAEHAGLNIPGSAG*CLLTCAGHHRFTGR
Trigger: CCTCCCAGTGAATCGGTGGTGACCCGCACAGGTGAGCAGGCACCAGCCAGCGCTCCCAGGAATGTTCAGGCCCGCATGCTCAGCGCCACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp TGGAGAATCGAGCGGCGATGTAGGGCCGAGGCACCTCCAGCTGTCTaGAGTGGCGCAGGCTGCGCCTCTGCAGCCGGGAGATGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: WRIERRCRAEAPPAV*SGAGCASAAGRCPG
Trigger: TCCAGGACATCTCCCGGCTGCAGAGGCGCAGCCTGCGCCACTCCAGACAGCTGGAGGTGCCTCGGCCCTACATCGCCGCTCGATTCTCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCGGATGGCTGTGGCGTaGAGCGCCTCCGCCTCCACC +
Preference number: 5 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTRMAVA*SASAST
Trigger: GGTGGAGGCGGAGGCGCTCAACGCCACAGCCATCCG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS CCA 90 bp GGATGGAGAAGCGTGGGGCCACACGGCGGACTCGCACGTAGAGGTTaGCAGGTGATGAGTAGCGCACCCCAGCGCTGTTGGTGGCCACAC +
Preference number: 5 (lower is better)
Translates to: GWRSVGPHGGLARRG*QVMSSAPQRCWWPH
Trigger: GTGTGGCCACCAACAGCGCTGGGGTGCGCTACTCATCACCTGCCAACCTCTACGTGCGAGTCCGCCGTGTGGCCCCACGCTTCTCCATCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp GCGGACGCTGTAGCCCACGAGGGCCCCGTTGTGAGTTTCTGGCGGTaGCGGGCGCCAACTTACCAATATGGCCGTGGAGCGCAAGCTGGT +
Preference number: 5 (lower is better)
Translates to: ADAVAHEGPVVSFWR*RAPTYQYGRGAQAG
Trigger: ACCAGCTTGCGCTCCACGGCCATATTGGTAAGTTGGCGCCCGCCACCGCCAGAAACTCACAACGGGGCCCTCGTGGGCTACAGCGTCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS-3UTR CAA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCGCCAGCATGATGTCCTaGATGCGCGGTGGCCCGCGG +
Preference number: 5 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTASMMS*MRGGPR
Trigger: CCGCGGGCCACCGCGCATCAAGGACATCATGCTGGC...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS CCA 90 bp CGCAAGTTCATGGGCTGGCCAGGAACTCCCTGCTGGGTCTTGACCTaGATGGGGTCTGACAGTGGTCCGTCGCCCACCGACGTGAAGGCG +
Preference number: 5 (lower is better)
Translates to: RKFMGWPGTPCWVLT*MGSDSGPSPTDVKA
Trigger: CGCCTTCACGTCGGTGGGCGACGGACCACTGTCAGACCCCATCCAGGTCAAGACCCAGCAGGGAGTTCCTGGCCAGCCCATGAACTTGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp TCGGTAGCGGACGCTGTAGCCCACGAGGGCCCCGTTGTGAGTTTCTaGCGGTGGCGGGCGCCAACTTACCAATATGGCCGTGGAGCGCAA +
Preference number: 5 (lower is better)
Translates to: SVADAVAHEGPVVSF*RWRAPTYQYGRGAQ
Trigger: TTGCGCTCCACGGCCATATTGGTAAGTTGGCGCCCGCCACCGCCAGAAACTCACAACGGGGCCCTCGTGGGCTACAGCGTCCGCTACCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CCA 90 bp ATACTCCGTATTGGGCTTGAGGTCCTCCACCACAAAGGCTGTGGTTaGGTCGAAGGTTCGCCCCACCTCTCGGCCTCGGTCGCCCTCCCG +
Preference number: 5 (lower is better)
Translates to: ILRIGLEVLHHKGCG*VEGSPHLSASVALP
Trigger: CGGGAGGGCGACCGAGGCCGAGAGGTGGGGCGAACCTTCGACCCAACCACAGCCTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGTAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223642.2
ENSMUST00000223859.2
ENSMUST00000225456.2
CDS CCA 90 bp CCAGAAGGATCTGAGTGGTGGTCGGGGGTATGTTGTTCACCTCCTTaGGGTCCGGGTCCTCTGAGCCCAGCGGTCGGTAGCGGACGCTGT +
Preference number: 5 (lower is better)
Translates to: PEGSEWWSGVCCSPP*GPGPLSPAVGSGRC
Trigger: ACAGCGTCCGCTACCGACCGCTGGGCTCAGAGGACCCGGACCCCAAGGAGGTGAACAACATACCCCCGACCACCACTCAGATCCTTCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS-3UTR CAA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCCACGGATCAGGCCATaGGGCTCCACAGGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSPRIRP*GSTGSS
Trigger: GGAGGAGCCTGTGGAGCCCAATGGCCTGATCCGTGG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp CCTGTCGTGGTGCACTCCACGAGAGCCCAATGCTGGTCTCTGACTTaGCCTCAGCCCGCAAGTTCATGGGCTGGCCAGGAACTCCCTGCT +
Preference number: 5 (lower is better)
Translates to: PVVVHSTRAQCWSLT*PQPASSWAGQELPA
Trigger: AGCAGGGAGTTCCTGGCCAGCCCATGAACTTGCGGGCTGAGGCCAAGTCAGAGACCAGCATTGGGCTCTCGTGGAGTGCACCACGACAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 90 bp ACTCTCCTGTCGTGGTGCACTCCACGAGAGCCCAATGCTGGTCTCTaGCTTGGCCTCAGCCCGCAAGTTCATGGGCTGGCCAGGAACTCC +
Preference number: 5 (lower is better)
Translates to: TLLSWCTPREPNAGL*LGLSPQVHGLARNS
Trigger: GGAGTTCCTGGCCAGCCCATGAACTTGCGGGCTGAGGCCAAGTCAGAGACCAGCATTGGGCTCTCGTGGAGTGCACCACGACAGGAGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGACACGGGGTCAGGGTaGCCCGAGTCCCATGTGACA +
Preference number: 5 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTDTGSG*PESHVT
Trigger: TGTCACATGGGACTCGGGCAACCCTGACCCCGTGTC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTGACACGGGGTCAGGGTaGCCCGAGTCCCATGTGACA +
Preference number: 5 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRDTGSG*PESHVT
Trigger: TGTCACATGGGACTCGGGCAACCCTGACCCCGTGTC...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCCCTGGCCAATGGAGTaGACAGCTGACACCCAGATC +
Preference number: 5 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTPWPME*TADTQI
Trigger: GATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAACCACCACCTTCGGTTaGCTGCGAGCGCCATCGCCT +
Preference number: 5 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTTTTFG*LRAPSP
Trigger: AGGCGATGGCGCTCGCAGCAAACCGAAGGTGGTGGT...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS CCA 90 bp GCCACACACTCGTACACGTTCTCATCCCGAGGCGTCCGAAGTGGCTaGATCCTCAGGACCGCCCCAGAGCTCTCGTCAAAGTCAATGGTC +
Preference number: 5 (lower is better)
Translates to: ATHSYTFSSRGVRSG*ILRTAPELSSKSMV
Trigger: GACCATTGACTTTGACGAGAGCTCTGGGGCGGTCCTGAGGATCCAGCCACTTCGGACGCCTCGGGATGAGAACGTGTACGAGTGTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp CTGGGCCACACACTCGTACACGTTCTCATCCCGAGGCGTCCGAAGTaGCTGGATCCTCAGGACCGCCCCAGAGCTCTCGTCAAAGTCAAT +
Preference number: 5 (lower is better)
Translates to: LGHTLVHVLIPRRPK*LDPQDRPRALVKVN
Trigger: ATTGACTTTGACGAGAGCTCTGGGGCGGTCCTGAGGATCCAGCCACTTCGGACGCCTCGGGATGAGAACGTGTACGAGTGTGTGGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp GGCGTGGGGTACTCAGGTACCCCGTGGTCGGGCCATGCCGTGAACTaGAAATGTCGCACCTCACGCTTCTCGCTAGAGCCATTCTTGTGT +
Preference number: 5 (lower is better)
Translates to: GVGYSGTPWSGHAVN*KCRTSRFSLEPFLC
Trigger: ACACAAGAATGGCTCTAGCGAGAAGCGTGAGGTGCGACATTTCCAGTTCACGGCATGGCCCGACCACGGGGTACCTGAGTACCCCACGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGGGCCCATGTCAATGTaGGGGAAGCCAGGAGGCAGC +
Preference number: 5 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKGPMSM*GKPGGS
Trigger: GCTGCCTCCTGGCTTCCCCAACATTGACATGGGCCC...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGCGCACCCCAGCGCTGTaGGTGGCCACACACTCGTAC +
Preference number: 5 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRRTPAL*VATHSY
Trigger: GTACGAGTGTGTGGCCACCAACAGCGCTGGGGTGCG...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGTGGTCGGGGGTATGTaGTTCACCTCCTTGGGGTCC +
Preference number: 5 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTVVGGM*FTSLGS
Trigger: GGACCCCAAGGAGGTGAACAACATACCCCCGACCAC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CAA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAGGCGGGTTGCAGGTCTaGACTCTTCGCAGGAATGCC +
Preference number: 5 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTGGLQV*TLRRNA
Trigger: GGCATTCCTGCGAAGAGTCAAGACCTGCAACCCGCC...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCACGGTCTTCTCTGTCTaGATGCGCTCTAGCATGGCG +
Preference number: 5 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTTVFSV*MRSSMA
Trigger: CGCCATGCTAGAGCGCATCAAGACAGAGAAGACCGT...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTGAACTGGCGAGCCTCTaGAACTCAAGCTCCATGCCC +
Preference number: 5 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSELASL*NSSSMP
Trigger: GGGCATGGAGCTTGAGTTCAAGAGGCTCGCCAGTTC...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCGCGAAGTGTGTGCCTaGGAACTGGCGAGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRREVCA*ELASLL
Trigger: CAAGAGGCTCGCCAGTTCCAAGGCACACACTTCGCG...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 90 bp TGCGGGTCACCACCGATTCACTGGGAGGGCCCTGGCCAATGGAGTTaGCAGCTGACACCCAGATCTCATACTCAGAATTGGGGCTCAGGC +
Preference number: 5 (lower is better)
Translates to: CGSPPIHWEGPGQWS*QLTPRSHTQNWGSG
Trigger: GCCTGAGCCCCAATTCTGAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGGCCCTCCCAGTGAATCGGTGGTGACCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp GCCTGCTCACCTGTGCGGGTCACCACCGATTCACTGGGAGGGCCCTaGCCAATGGAGTTGACAGCTGACACCCAGATCTCATACTCAGAA +
Preference number: 5 (lower is better)
Translates to: ACSPVRVTTDSLGGP*PMELTADTQISYSE
Trigger: TTCTGAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGGCCCTCCCAGTGAATCGGTGGTGACCCGCACAGGTGAGCAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp CACCATATTGCTTCTGGTTCCCAGGATGGAAGACAGCTGGCAGGATaGAGAATCGAGCGGCGATGTAGGGCCGAGGCACCTCCAGCTGTC +
Preference number: 5 (lower is better)
Translates to: HHIASGSQDGRQLAG*RIERRCRAEAPPAV
Trigger: GACAGCTGGAGGTGCCTCGGCCCTACATCGCCGCTCGATTCTCCATCCTGCCAGCTGTCTTCCATCCTGGGAACCAGAAGCAATATGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGGGCCCATGTCAATGTaGGGGAAGCCAGGAGGCAGC +
Preference number: 5 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPGPMSM*GKPGGS
Trigger: GCTGCCTCCTGGCTTCCCCAACATTGACATGGGCCC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGGGCCCATGTCAATGTaGGGGAAGCCAGGAGGCAGC +
Preference number: 5 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRGPMSM*GKPGGS
Trigger: GCTGCCTCCTGGCTTCCCCAACATTGACATGGGCCC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGACACGGGGTCAGGGTaGCCCGAGTCCCATGTGACA +
Preference number: 5 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEDTGSG*PESHVT
Trigger: TGTCACATGGGACTCGGGCAACCCTGACCCCGTGTC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTCCCTGGCCAATGGAGTaGACAGCTGACACCCAGATC +
Preference number: 5 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRPWPME*TADTQI
Trigger: GATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGG...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGAACGCATACTCCGTATaGGGCTTGAGGTCCTCCACC +
Preference number: 5 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPNAYSV*GLRSST
Trigger: GGTGGAGGACCTCAAGCCCAATACGGAGTATGCGTT...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTCGGTTCTTGGGCTTGTaGGCCTCCAGGTTCGAATGT +
Preference number: 5 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSRFLGL*ASRFEC
Trigger: ACATTCGAACCTGGAGGCCAACAAGCCCAAGAACCG...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 90 bp CACCACCGATTCACTGGGAGGGCCCTGGCCAATGGAGTTGACAGCTaGCACCCAGATCTCATACTCAGAATTGGGGCTCAGGCCTCCGAT +
Preference number: 5 (lower is better)
Translates to: HHRFTGRALANGVDS*HPDLILRIGAQASD
Trigger: ATCGGAGGCCTGAGCCCCAATTCTGAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGGCCCTCCCAGTGAATCGGTGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp GTCAAAGCCACCATATTGCTTCTGGTTCCCAGGATGGAAGACAGCTaGCAGGATGGAGAATCGAGCGGCGATGTAGGGCCGAGGCACCTC +
Preference number: 5 (lower is better)
Translates to: VKATILLLVPRMEDS*QDGESSGDVGPRHL
Trigger: GAGGTGCCTCGGCCCTACATCGCCGCTCGATTCTCCATCCTGCCAGCTGTCTTCCATCCTGGGAACCAGAAGCAATATGGTGGCTTTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp TTCGTTATCACCATTTCATATTCGGCAGTGTCGTCCATCTCCCACTaGGCATCCGCCAGCATGATGTCCTTGATGCGCGGTGGCCCGCGG +
Preference number: 5 (lower is better)
Translates to: FVITISYSAVSSISH*ASASMMSLMRGGPR
Trigger: CCGCGGGCCACCGCGCATCAAGGACATCATGCTGGCGGATGCCCAGTGGGAGATGGACGACACTGCCGAATATGAAATGGTGATAACGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225456.2
CDS-3UTR CAA 90 bp GGACTGGAGCAGCAAGGCCAGCCACTGTGTCCTTGGTGGCCATGTCCCTGTAGTAGACTGTCGTCCACATaGTGTTTCTGCCAGTTGCCC +
Preference number: 5 (lower is better)
Translates to: GLEQQGQPLCPWWPCPCSRLSST*CFCQLP
Trigger: GGGCAACTGGCAGAAACACAATGTGGACGACAGTCT...ACTACAGGGACATGGCCACCAAGGACACAGTGGCTGGCCTTGCTGCTCCAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAAGGCTGTCGTTGGCTTaGAGTCTCTCCATGTGCTCC +
Preference number: 5 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTRLSLA*SLSMCS
Trigger: GGAGCACATGGAGAGACTCAAAGCCAACGACAGCCT...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACAATGTTCCCACGTGAATaGCTGCCCGGGGTCAATGGA +
Preference number: 5 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTMFPRE*LPGVNG
Trigger: TCCATTGACCCCGGGCAGCAATTCACGTGGGAACAT...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACGGTTCTTGGGCTTGTaGGCCTCCAGGTTCGAATGT +
Preference number: 5 (lower is better)
Translates to: RTIHMGMGAVSGMWERCTRFLGL*ASRFEC
Trigger: ACATTCGAACCTGGAGGCCAACAAGCCCAAGAACCG...TGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGGCGGGTTGCAGGTCTaGACTCTTCGCAGGAATGCC +
Preference number: 5 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEGGLQV*TLRRNA
Trigger: GGCATTCCTGCGAAGAGTCAAGACCTGCAACCCGCC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCCAGCATCAGGCGGGTaGCAGGTCTTGACTCTTCGC +
Preference number: 5 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPPASGG*QVLTLR
Trigger: GCGAAGAGTCAAGACCTGCAACCCGCCTGATGCTGG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAACGCGAAGTGTGTGCCTaGGAACTGGCGAGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEREVCA*ELASLL
Trigger: CAAGAGGCTCGCCAGTTCCAAGGCACACACTTCGCG...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 90 bp AAGCCAGGAGGCAGCTGGTCCTCTCGAAGGACGGTGAGCTTTGCATaGATTGTGATTTCGCCCACCGAGTTCTGGGCCACACACTCGTAC +
Preference number: 5 (lower is better)
Translates to: KPGGSWSSRRTVSFA*IVISPTEFWATHSY
Trigger: GTACGAGTGTGTGGCCCAGAACTCGGTGGGCGAAATCACAATTCATGCAAAGCTCACCGTCCTTCGAGAGGACCAGCTGCCTCCTGGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 90 bp GTGACACGGTACTCCGTCCATTTCTCCAAAGCTTCCAGAAGGATCTaGGTGGTGGTCGGGGGTATGTTGTTCACCTCCTTGGGGTCCGGG +
Preference number: 5 (lower is better)
Translates to: VTRYSVHFSKASRRI*VVVGGMLFTSLGSG
Trigger: CCCGGACCCCAAGGAGGTGAACAACATACCCCCGACCACCACTCAGATCCTTCTGGAAGCTTTGGAGAAATGGACGGAGTACCGTGTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS TCA 90 bp CAGGGAACTGGCCACCTCGAGACTTCCGAAGTGGGACCATCACAATaGAGTAGTTCTGCACGGTCACAGGACTCTGGCCATCAGGCAGGT +
Preference number: 5 (lower is better)
Translates to: QGTGHLETSEVGPSQ*SSSARSQDSGHQAG
Trigger: ACCTGCCTGATGGCCAGAGTCCTGTGACCGTGCAGAACTACTTCATTGTGATGGTCCCACTTCGGAAGTCTCGAGGTGGCCAGTTCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
ENSMUST00000224777.2
CDS GCA 90 bp AAACTTGTTGCAAGGCAGGCTGGCGGTGATGAAGCGCGAAGTGTGTaGCTTGGAACTGGCGAGCCTCTTGAACTCAAGCTCCATGCCCGT +
Preference number: 5 (lower is better)
Translates to: KLVARQAGGDEARSV*LGTGEPLELKLHAR
Trigger: ACGGGCATGGAGCTTGAGTTCAAGAGGCTCGCCAGTTCCAAGGCACACACTTCGCGCTTCATCACCGCCAGCCTGCCTTGCAACAAGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp GGTACTCCGTCCATTTCTCCAAAGCTTCCAGAAGGATCTGAGTGGTaGTCGGGGGTATGTTGTTCACCTCCTTGGGGTCCGGGTCCTCTG +
Preference number: 5 (lower is better)
Translates to: GTPSISPKLPEGSEW*SGVCCSPPWGPGPL
Trigger: CAGAGGACCCGGACCCCAAGGAGGTGAACAACATACCCCCGACCACCACTCAGATCCTTCTGGAAGCTTTGGAGAAATGGACGGAGTACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CCA 90 bp CACGGTACTCCGTCCATTTCTCCAAAGCTTCCAGAAGGATCTGAGTaGTGGTCGGGGGTATGTTGTTCACCTCCTTGGGGTCCGGGTCCT +
Preference number: 5 (lower is better)
Translates to: HGTPSISPKLPEGSE*WSGVCCSPPWGPGP
Trigger: AGGACCCGGACCCCAAGGAGGTGAACAACATACCCCCGACCACCACTCAGATCCTTCTGGAAGCTTTGGAGAAATGGACGGAGTACCGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CCA 90 bp TGGCCTGGCTCCAAGCCCCTGTTGTCAAAGCCACCATATTGCTTCTaGTTCCCAGGATGGAAGACAGCTGGCAGGATGGAGAATCGAGCG +
Preference number: 5 (lower is better)
Translates to: WPGSKPLLSKPPYCF*FPGWKTAGRMENRA
Trigger: CGCTCGATTCTCCATCCTGCCAGCTGTCTTCCATCCTGGGAACCAGAAGCAATATGGTGGCTTTGACAACAGGGGCTTGGAGCCAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGCCCTGGCCAATGGAGTaGACAGCTGACACCCAGATC +
Preference number: 5 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRPWPME*TADTQI
Trigger: GATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGG...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTTGTGTTTCTGCCAGTaGCCCACTGGGTGTTCCGGC +
Preference number: 5 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPLCFCQ*PTGCSG
Trigger: GCCGGAACACCCAGTGGGCAACTGGCAGAAACACAA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGGGGCGACGCTAGGCTaGCCACTGAGCATGTTAAAG +
Preference number: 5 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRGATLG*PLSMLK
Trigger: CTTTAACATGCTCAGTGGCAAGCCTAGCGTCGCCCC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp CATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGGTCAAAGCCACCATATaGCTTCTGGTTCCCAGGATG +
Preference number: 5 (lower is better)
Translates to: HGDGGSVGHVGKMHTQKPVKATI*LLVPRM
Trigger: CATCCTGGGAACCAGAAGCAATATGGTGGCTTTGAC...CGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGAGGCTGTCGTTGGCTTaGAGTCTCTCCATGTGCTCC +
Preference number: 5 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKRLSLA*SLSMCS
Trigger: GGAGCACATGGAGAGACTCAAAGCCAACGACAGCCT...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGATGTTCCCACGTGAATaGCTGCCCGGGGTCAATGGA +
Preference number: 5 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKMFPRE*LPGVNG
Trigger: TCCATTGACCCCGGGCAGCAATTCACGTGGGAACAT...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGACGGTCTTCTCTGTCTaGATGCGCTCTAGCATGGCG +
Preference number: 5 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKTVFSV*MRSSMA
Trigger: CGCCATGCTAGAGCGCATCAAGACAGAGAAGACCGT...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGGAACTGGCGAGCCTCTaGAACTCAAGCTCCATGCCC +
Preference number: 5 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRELASL*NSSSMP
Trigger: GGGCATGGAGCTTGAGTTCAAGAGGCTCGCCAGTTC...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTGCCAAAAGGCAGGCAGGGGAGTGCGGAAGCAGAGGTCGGTCCCTGTGTGACCCCCATTTCTCGGAGCTaGGTGAGCATTACGACAATA +
Preference number: 5 (lower is better)
Translates to: LPKGRQGSAEAEVGPCVTPISRS*VSITTI
Trigger: TATTGTCGTAATGCTCACCAAGCTCCGAGAAATGGG...GGTCACACAGGGACCGACCTCTGCTTCCGCACTCCCCTGCCTGCCTTTTGGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS GCA 90 bp CCACAGTGGTCAGGAGACTGTCGTCCACATTGTGTTTCTGCCAGTTaGCCACTGGGTGTTCCGGCTCCATGGTATAGTAGACACGGTAGC +
Preference number: 5 (lower is better)
Translates to: PQWSGDCRPHCVSAS*PLGVPAPWYSRHGS
Trigger: GCTACCGTGTCTACTATACCATGGAGCCGGAACACCCAGTGGGCAACTGGCAGAAACACAATGTGGACGACAGTCTCCTGACCACTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 90 bp GGTCAGGAGACTGTCGTCCACATTGTGTTTCTGCCAGTTGCCCACTaGGTGTTCCGGCTCCATGGTATAGTAGACACGGTAGCCACGGAT +
Preference number: 5 (lower is better)
Translates to: GQETVVHIVFLPVAH*VFRLHGIVDTVATD
Trigger: ATCCGTGGCTACCGTGTCTACTATACCATGGAGCCGGAACACCCAGTGGGCAACTGGCAGAAACACAATGTGGACGACAGTCTCCTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGAGACTGTCGTCCACATaGTGTTTCTGCCAGTTGCCC +
Preference number: 5 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKRLSST*CFCQLP
Trigger: GGGCAACTGGCAGAAACACAATGTGGACGACAGTCT...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp AAACTAAGCGCACCATTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAAACGCATACTCCGTATaGGGCTTGAGGTCCTCCACC +
Preference number: 5 (lower is better)
Translates to: KLSAPFTWGWGQCRACGKNAYSV*GLRSST
Trigger: GGTGGAGGACCTCAAGCCCAATACGGAGTATGCGTT...TTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAATGGTGCGCTTAGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGAACGCATACTCCGTATaGGGCTTGAGGTCCTCCACC +
Preference number: 5 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRNAYSV*GLRSST
Trigger: GGTGGAGGACCTCAAGCCCAATACGGAGTATGCGTT...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATTGATGATGGCGCCGTaGCGCTCGGCGGGCACGGGT +
Preference number: 5 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKLMMAP*RSAGTG
Trigger: ACCCGTGCCCGCCGAGCGCAACGGCGCCATCATCAA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS-3UTR CAA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCATGTTCCCACGTGAATaGCTGCCCGGGGTCAATGGA +
Preference number: 5 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPMFPRE*LPGVNG
Trigger: TCCATTGACCCCGGGCAGCAATTCACGTGGGAACAT...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCGGTTCTTGGGCTTGTaGGCCTCCAGGTTCGAATGT +
Preference number: 5 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPRFLGL*ASRFEC
Trigger: ACATTCGAACCTGGAGGCCAACAAGCCCAAGAACCG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACGCACCCCAGCGCTGTaGGTGGCCACACACTCGTAC +
Preference number: 5 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKRTPAL*VATHSY
Trigger: GTACGAGTGTGTGGCCACCAACAGCGCTGGGGTGCG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAAGACTGTCGTCCACATaGTGTTTCTGCCAGTTGCCC +
Preference number: 5 (lower is better)
Translates to: FTWGWGQCRACGKDAHTERLSST*CFCQLP
Trigger: GGGCAACTGGCAGAAACACAATGTGGACGACAGTCT...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTACTCCGTATTGGGCTaGAGGTCCTCCACCACAAAG +
Preference number: 5 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRYSVLG*RSSTTK
Trigger: CTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGTA...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCTACTCCGTATTGGGCTaGAGGTCCTCCACCACAAAG +
Preference number: 5 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPYSVLG*RSSTTK
Trigger: CTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGTA...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGTCAAAGCCACCATATaGCTTCTGGTTCCCAGGATG +
Preference number: 5 (lower is better)
Translates to: FTWGWGQCRACGKDAHTEVKATI*LLVPRM
Trigger: CATCCTGGGAACCAGAAGCAATATGGTGGCTTTGAC...TTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCGTCAAAGCCACCATATaGCTTCTGGTTCCCAGGATG +
Preference number: 5 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPVKATI*LLVPRM
Trigger: CATCCTGGGAACCAGAAGCAATATGGTGGCTTTGAC...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp ATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCGTTCGCTAGAGCCATTCTaGTGTAGAGAAAAAGTCCTG +
Preference number: 5 (lower is better)
Translates to: MGMGAVSGMWERCTHRSRSLEPF*CREKVL
Trigger: CAGGACTTTTTCTCTACACAAGAATGGCTCTAGCGA...ACGGCTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TCACATGGGGATGGGGGCAGTGTCGGGCATGTGGGAAAGATGCACACACAGAAGCCCATTTCTCGGAGCTaGGTGAGCATTACGACAATA +
Preference number: 5 (lower is better)
Translates to: SHGDGGSVGHVGKMHTQKPISRS*VSITTI
Trigger: TATTGTCGTAATGCTCACCAAGCTCCGAGAAATGGG...CTTCTGTGTGTGCATCTTTCCCACATGCCCGACACTGCCCCCATCCCCATGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAACCAGCATCAGGCGGGTaGCAGGTCTTGACTCTTCGC +
Preference number: 5 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKPASGG*QVLTLR
Trigger: GCGAAGAGTCAAGACCTGCAACCCGCCTGATGCTGG...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp GACCCACTCTCCTACAAAGAGAGACCTCAGTTGCTCCAGGGGGTTGGATATCCCCCCATTTCTCGGAGCTaGGTGAGCATTACGACAATA +
Preference number: 5 (lower is better)
Translates to: DPLSYKERPQLLQGVGYPPISRS*VSITTI
Trigger: TATTGTCGTAATGCTCACCAAGCTCCGAGAAATGGG...GGGATATCCAACCCCCTGGAGCAACTGAGGTCTCTCTTTGTAGGAGAGTGGGTC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS GCA 90 bp GGTCGGCATTGTTCAGTAAGCATTTGGTGCGGGGCTCTGAGTCCTTaGGTTTGCTGTCAGGTTTGTTCTTGTACAGCAGGATGGCAATCA +
Preference number: 5 (lower is better)
Translates to: GRHCSVSIWCGALSP*VCCQVCSCTAGWQS
Trigger: TGATTGCCATCCTGCTGTACAAGAACAAACCTGACAGCAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGAACAATGCCGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS CCA 90 bp ATTCTTCTGCAACACAGCAAGCACAAAGAGGACATAGCGGTGGCCTaGCTCCAAGCCCCTGTTGTCAAAGCCACCATATTGCTTCTGGTT +
Preference number: 5 (lower is better)
Translates to: ILLQHSKHKEDIAVA*LQAPVVKATILLLV
Trigger: AACCAGAAGCAATATGGTGGCTTTGACAACAGGGGCTTGGAGCCAGGCCACCGCTATGTCCTCTTTGTGCTTGCTGTGTTGCAGAAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAGGGGCGACGCTAGGCTaGCCACTGAGCATGTTAAAG +
Preference number: 5 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKGATLG*PLSMLK
Trigger: CTTTAACATGCTCAGTGGCAAGCCTAGCGTCGCCCC...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp TTTTGGAATCAGAAGGGAATGAGGAAGGCAGCGCCTGTCTCCGCGAAGAGGAGGTCGCTAGAGCCATTCTaGTGTAGAGAAAAAGTCCTG +
Preference number: 5 (lower is better)
Translates to: FWNQKGMRKAAPVSAKRRSLEPF*CREKVL
Trigger: CAGGACTTTTTCTCTACACAAGAATGGCTCTAGCGA...CCTCCTCTTCGCGGAGACAGGCGCTGCCTTCCTCATTCCCTTCTGATTCCAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS GCA 90 bp CATTGTTCAGTAAGCATTTGGTGCGGGGCTCTGAGTCCTTGCGTTTaGTGTCAGGTTTGTTCTTGTACAGCAGGATGGCAATCACGATGC +
Preference number: 5 (lower is better)
Translates to: HCSVSIWCGALSPCV*CQVCSCTAGWQSRC
Trigger: GCATCGTGATTGCCATCCTGCTGTACAAGAACAAACCTGACAGCAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGAACAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS-3UTR CAA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAAAGGCTGTCGTTGGCTTaGAGTCTCTCCATGTGCTCC +
Preference number: 5 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKRLSLA*SLSMCS
Trigger: GGAGCACATGGAGAGACTCAAAGCCAACGACAGCCT...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS-3UTR CAA 90 bp ATACAAAGTTGGTTTATCTACATACAGGGGCGTCACCTGCTGCTTCTGCCCAAATCGCTAGAGCCATTCTaGTGTAGAGAAAAAGTCCTG +
Preference number: 5 (lower is better)
Translates to: IQSWFIYIQGRHLLLLPKSLEPF*CREKVL
Trigger: CAGGACTTTTTCTCTACACAAGAATGGCTCTAGCGA...TTTGGGCAGAAGCAGCAGGTGACGCCCCTGTATGTAGATAAACCAACTTTGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 72 bp GTTTGGCCTGCAGCGTGCGCTGGCGCACGACCGCGGTaGAGGCGCCCAGGCCCTGCGGCGAGCGCGCCGCCA +
Preference number: 6 (lower is better)
Translates to: VWPAACAGARPR*RRPGPAASAPP
Trigger: TGGCGGCGCGCTCGCCGCAGGGCCTGGGCGCCTTCACCGCGGTCGTGCGCCAGCGCACGCTGCAGGCCAAAC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000223642.2
ENSMUST00000225456.2
CDS TCA 72 bp GACTGGGTCCCGCGCGAGCCTGTAGCGCAGCGGGGGTaGGAAGGGGCCCGGGCCGCGACGCGTGTGTGCGCG +
Preference number: 6 (lower is better)
Translates to: DWVPREPVAQRG*EGARAATRVCA
Trigger: CGCGCACACACGCGTCGCGGCCCGGGCCCCTTCTCACCCCCGCTGCGCTACAGGCTCGCGCGGGACCCAGTC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS TCA 72 bp AGATGGCCTGCAGCGTGCGCTGGCGCACGACCGCGGTaGAGGCGCCCAGGCCCTGCGGCGAGCGCGCCGCCA +
Preference number: 6 (lower is better)
Translates to: RWPAACAGARPR*RRPGPAASAPP
Trigger: TGGCGGCGCGCTCGCCGCAGGGCCTGGGCGCCTTCACCGCGGTCGTGCGCCAGCGCACGCTGCAGGCCATCT
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 90 bp GGCACGGGTGGCAGCCAGCGCAGTAGCACGGAGCCCGCGGACACGTaGCCCGCGGCGCCCAAGATCTGCGGGAAGCCGCGCGGAGCGTCC +
Preference number: 6 (lower is better)
Translates to: GTGGSQRSSTEPADT*PAAPKICGKPRGAS
Trigger: GGACGCTCCGCGCGGCTTCCCGCAGATCTTGGGCGCCGCGGGCAACGTGTCCGCGGGCTCCGTGCTACTGCGCTGGCTGCCACCCGTGCC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CAA 90 bp GTCGCGGGCCCAGGGGCGCCGGCCTCCCGCACGGACACCGTGTACTaGATGATGGCGCCGTTGCGCTCGGCGGGCACGGGTGGCAGCCAG +
Preference number: 6 (lower is better)
Translates to: VAGPGAPASRTDTVY*MMAPLRSAGTGGSQ
Trigger: CTGGCTGCCACCCGTGCCCGCCGAGCGCAACGGCGCCATCATCAAGTACACGGTGTCCGTGCGGGAGGCCGGCGCCCCTGGGCCCGCGAC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS CCA 72 bp CCGCGCGGCCCCGCGCTGCCAGCCGGAACACATAGGTaGCGCCCTTGTGTGCAGGCGCCGCGAACCGCCGCT +
Preference number: 6 (lower is better)
Translates to: PRGPALPAGTHR*RPCVQAPRTAA
Trigger: AGCGGCGGTTCGCGGCGCCTGCACACAAGGGCGCCACCTATGTGTTCCGGCTGGCAGCGCGGGGCCGCGCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CCA 72 bp CCGCGAACCGCCGCTCCCACGCAGCCAGCTCCAACGTaGCCGGGGCCGCGTCTTCGCGCCCAAACTGCAGGC +
Preference number: 6 (lower is better)
Translates to: PRTAAPTQPAPT*PGPRLRAQTAG
Trigger: GCCTGCAGTTTGGGCGCGAAGACGCGGCCCCGGCCACGTTGGAGCTGGCTGCGTGGGAGCGGCGGTTCGCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CAA 72 bp CCAGGGGCGCCGGCCTCCCGCACGGACACCGTGTACTaGATGATGGCGCCGTTGCGCTCGGCGGGCACGGGT +
Preference number: 6 (lower is better)
Translates to: PGAPASRTDTVY*MMAPLRSAGTG
Trigger: ACCCGTGCCCGCCGAGCGCAACGGCGCCATCATCAAGTACACGGTGTCCGTGCGGGAGGCCGGCGCCCCTGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067538.6
CDS CAA 90 bp GCGCCGGCCTCCCGCACGGACACCGTGTACTTGATGATGGCGCCGTaGCGCTCGGCGGGCACGGGTGGCAGCCAGCGCAGTAGCACGGAG +
Preference number: 6 (lower is better)
Translates to: APASRTDTVYLMMAP*RSAGTGGSQRSSTE
Trigger: CTCCGTGCTACTGCGCTGGCTGCCACCCGTGCCCGCCGAGCGCAACGGCGCCATCATCAAGTACACGGTGTCCGTGCGGGAGGCCGGCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS GCA 72 bp CGCTGCCAGCCGGAACACATAGGTGGCGCCCTTGTGTaGAGGCGCCGCGAACCGCCGCTCCCACGCAGCCAG +
Preference number: 6 (lower is better)
Translates to: RCQPEHIGGALV*RRREPPLPRSQ
Trigger: CTGGCTGCGTGGGAGCGGCGGTTCGCGGCGCCTGCACACAAGGGCGCCACCTATGTGTTCCGGCTGGCAGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CCA 72 bp GCAGGCTGCCCTCGGGGGTCTGCTGCACCGACAGGGTaGGGCGGCCCAGCACTGCTCCCTTGGTCACCACCA +
Preference number: 6 (lower is better)
Translates to: AGCPRGSAAPTG*GGPALLPWSPP
Trigger: TGGTGGTGACCAAGGGAGCAGTGCTGGGCCGCCCCACCCTGTCGGTGCAGCAGACCCCCGAGGGCAGCCTGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CCA 72 bp GAGCGGCGATGTAGGGCCGAGGCACCTCCAGCTGTCTaGAGTGGCGCAGGCTGCGCCTCTGCAGCCGGGAGA +
Preference number: 6 (lower is better)
Translates to: ERRCRAEAPPAV*SGAGCASAAGR
Trigger: TCTCCCGGCTGCAGAGGCGCAGCCTGCGCCACTCCAGACAGCTGGAGGTGCCTCGGCCCTACATCGCCGCTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp ATCGGTGCGGACGACCACGGGCGAGCTCTCGGGCCCTaGTCCCACCTCTGTGTAAGCCACGGCGGTGACACG +
Preference number: 6 (lower is better)
Translates to: IGADDHGRALGP*SHLCVSHGGDT
Trigger: CGTGTCACCGCCGTGGCTTACACAGAGGTGGGACCAGGGCCCGAGAGCTCGCCCGTGGTCGTCCGCACCGAT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000223642.2
ENSMUST00000225456.2
CDS CAA 72 bp TCCCGCACGGACACCGTGTACTTGATGATGGCGCCGTaGCGCTCGGCGGGCACGGGTGGCAGCCAGCGCAGT +
Preference number: 6 (lower is better)
Translates to: SRTDTVYLMMAP*RSAGTGGSQRS
Trigger: ACTGCGCTGGCTGCCACCCGTGCCCGCCGAGCGCAACGGCGCCATCATCAAGTACACGGTGTCCGTGCGGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS GCA 72 bp CATTCCTGGGAGCGCTGGCTGGTGCCTGCTCACCTGTaGGGGTCACCACCGATTCACTGGGAGGGCCCTGGC +
Preference number: 6 (lower is better)
Translates to: HSWERWLVPAHL*GSPPIHWEGPG
Trigger: GCCAGGGCCCTCCCAGTGAATCGGTGGTGACCCGCACAGGTGAGCAGGCACCAGCCAGCGCTCCCAGGAATG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp TTGAAGTTCTTTGGGGAGATGGCCTGCAGCGTGCGCTaGCGCACGACCGCGGTGAAGGCGCCCAGGCCCTGC +
Preference number: 6 (lower is better)
Translates to: LKFFGEMACSVR*RTTAVKAPRPC
Trigger: GCAGGGCCTGGGCGCCTTCACCGCGGTCGTGCGCCAGCGCACGCTGCAGGCCATCTCCCCAAAGAACTTCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp AGCGTGGGGCCACACGGCGGACTCGCACGTAGAGGTTaGCAGGTGATGAGTAGCGCACCCCAGCGCTGTTGG +
Preference number: 6 (lower is better)
Translates to: SVGPHGGLARRG*QVMSSAPQRCW
Trigger: CCAACAGCGCTGGGGTGCGCTACTCATCACCTGCCAACCTCTACGTGCGAGTCCGCCGTGTGGCCCCACGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 72 bp GGATGGGGTCTGACAGTGGTCCGTCGCCCACCGACGTaGAGGCGAGCACGCGCACGGTGTAGGTCTCGTCTT +
Preference number: 6 (lower is better)
Translates to: GWGLTVVRRPPT*RRARARCRSRL
Trigger: AAGACGAGACCTACACCGTGCGCGTGCTCGCCTTCACGTCGGTGGGCGACGGACCACTGTCAGACCCCATCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 72 bp GGGTATGTTGTTCACCTCCTTGGGGTCCGGGTCCTCTaGGCCCAGCGGTCGGTAGCGGACGCTGTAGCCCAC +
Preference number: 6 (lower is better)
Translates to: GYVVHLLGVRVL*AQRSVADAVAH
Trigger: GTGGGCTACAGCGTCCGCTACCGACCGCTGGGCTCAGAGGACCCGGACCCCAAGGAGGTGAACAACATACCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CCA 72 bp GAGCATGCGGGCCTGAACATTCCTGGGAGCGCTGGCTaGTGCCTGCTCACCTGTGCGGGTCACCACCGATTC +
Preference number: 6 (lower is better)
Translates to: EHAGLNIPGSAG*CLLTCAGHHRF
Trigger: GAATCGGTGGTGACCCGCACAGGTGAGCAGGCACCAGCCAGCGCTCCCAGGAATGTTCAGGCCCGCATGCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp ATGGGCTGGCCAGGAACTCCCTGCTGGGTCTTGACCTaGATGGGGTCTGACAGTGGTCCGTCGCCCACCGAC +
Preference number: 6 (lower is better)
Translates to: MGWPGTPCWVLT*MGSDSGPSPTD
Trigger: GTCGGTGGGCGACGGACCACTGTCAGACCCCATCCAGGTCAAGACCCAGCAGGGAGTTCCTGGCCAGCCCAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp GTAGCCCACGAGGGCCCCGTTGTGAGTTTCTGGCGGTaGCGGGCGCCAACTTACCAATATGGCCGTGGAGCG +
Preference number: 6 (lower is better)
Translates to: VAHEGPVVSFWR*RAPTYQYGRGA
Trigger: CGCTCCACGGCCATATTGGTAAGTTGGCGCCCGCCACCGCCAGAAACTCACAACGGGGCCCTCGTGGGCTAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CAA 90 bp TGCGGCGAGCGCGCCGCCAGCCGGAACGCATACTCCGTATTGGGCTaGAGGTCCTCCACCACAAAGGCTGTGGTTGGGTCGAAGGTTCGC +
Preference number: 6 (lower is better)
Translates to: CGERAASRNAYSVLG*RSSTTKAVVGSKVR
Trigger: GCGAACCTTCGACCCAACCACAGCCTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGTATGCGTTCCGGCTGGCGGCGCGCTCGCCGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223642.2
ENSMUST00000223859.2
ENSMUST00000225456.2
CDS CCA 72 bp CATGATCTCGTGGCTCATGGGCAGGATGGAGAAGCGTaGGGCCACACGGCGGACTCGCACGTAGAGGTTGGC +
Preference number: 6 (lower is better)
Translates to: HDLVAHGQDGEA*GHTADSHVEVG
Trigger: GCCAACCTCTACGTGCGAGTCCGCCGTGTGGCCCCACGCTTCTCCATCCTGCCCATGAGCCACGAGATCATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp GACGCTGTAGCCCACGAGGGCCCCGTTGTGAGTTTCTaGCGGTGGCGGGCGCCAACTTACCAATATGGCCGT +
Preference number: 6 (lower is better)
Translates to: DAVAHEGPVVSF*RWRAPTYQYGR
Trigger: ACGGCCATATTGGTAAGTTGGCGCCCGCCACCGCCAGAAACTCACAACGGGGCCCTCGTGGGCTACAGCGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CAA 72 bp CGCGCCGCCAGCCGGAACGCATACTCCGTATTGGGCTaGAGGTCCTCCACCACAAAGGCTGTGGTTGGGTCG +
Preference number: 6 (lower is better)
Translates to: RAASRNAYSVLG*RSSTTKAVVGS
Trigger: CGACCCAACCACAGCCTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGTATGCGTTCCGGCTGGCGGCGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223642.2
ENSMUST00000223859.2
ENSMUST00000225456.2
CDS CAA 72 bp GGCGAGCGCGCCGCCAGCCGGAACGCATACTCCGTATaGGGCTTGAGGTCCTCCACCACAAAGGCTGTGGTT +
Preference number: 6 (lower is better)
Translates to: GERAASRNAYSV*GLRSSTTKAVV
Trigger: AACCACAGCCTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGTATGCGTTCCGGCTGGCGGCGCGCTCGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223642.2
ENSMUST00000223859.2
ENSMUST00000225456.2
CDS CAA 90 bp GTGGGGCGGCCCAGCACTGCTCCCTTGGTCACCACCACCTTCGGTTaGCTGCGAGCGCCATCGCCTTTCATGGTATACGCGGCTACTGTG +
Preference number: 6 (lower is better)
Translates to: VGRPSTAPLVTTTFG*LRAPSPFMVYAATV
Trigger: CACAGTAGCCGCGTATACCATGAAAGGCGATGGCGCTCGCAGCAAACCGAAGGTGGTGGTGACCAAGGGAGCAGTGCTGGGCCGCCCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS TCA 72 bp TCGTGGTGCACTCCACGAGAGCCCAATGCTGGTCTCTaGCTTGGCCTCAGCCCGCAAGTTCATGGGCTGGCC +
Preference number: 6 (lower is better)
Translates to: SWCTPREPNAGL*LGLSPQVHGLA
Trigger: GGCCAGCCCATGAACTTGCGGGCTGAGGCCAAGTCAGAGACCAGCATTGGGCTCTCGTGGAGTGCACCACGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
ENSMUST00000225456.2
CDS TCA 72 bp CCACAATGGGGCCAGCATCAGGCGGGTTGCAGGTCTTaGCTCTTCGCAGGAATGCCAGGAAGGGCGTGGGGT +
Preference number: 6 (lower is better)
Translates to: PQWGQHQAGCRS*LFAGMPGRAWG
Trigger: ACCCCACGCCCTTCCTGGCATTCCTGCGAAGAGTCAAGACCTGCAACCCGCCTGATGCTGGCCCCATTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp ACACTCGTACACGTTCTCATCCCGAGGCGTCCGAAGTaGCTGGATCCTCAGGACCGCCCCAGAGCTCTCGTC +
Preference number: 6 (lower is better)
Translates to: TLVHVLIPRRPK*LDPQDRPRALV
Trigger: GACGAGAGCTCTGGGGCGGTCCTGAGGATCCAGCCACTTCGGACGCCTCGGGATGAGAACGTGTACGAGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp ATTGGGCTTGAGGTCCTCCACCACAAAGGCTGTGGTTaGGTCGAAGGTTCGCCCCACCTCTCGGCCTCGGTC +
Preference number: 6 (lower is better)
Translates to: IGLEVLHHKGCG*VEGSPHLSASV
Trigger: GACCGAGGCCGAGAGGTGGGGCGAACCTTCGACCCAACCACAGCCTTTGTGGTGGAGGACCTCAAGCCCAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223642.2
ENSMUST00000223859.2
ENSMUST00000225456.2
CDS CAA 72 bp ACCACAATGGGGCCAGCATCAGGCGGGTTGCAGGTCTaGACTCTTCGCAGGAATGCCAGGAAGGGCGTGGGG +
Preference number: 6 (lower is better)
Translates to: TTMGPASGGLQV*TLRRNARKGVG
Trigger: CCCCACGCCCTTCCTGGCATTCCTGCGAAGAGTCAAGACCTGCAACCCGCCTGATGCTGGCCCCATTGTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 72 bp TGCTCTCAATCTGCAGGGCACCTGATCGAAGCTGCTTaGTCCGCCCGTTGCTGGCACTGGGGTCCACAGGCA +
Preference number: 6 (lower is better)
Translates to: CSQSAGHLIEAA*SARCWHWGPQA
Trigger: TGCCTGTGGACCCCAGTGCCAGCAACGGGCGGATCAAGCAGCTTCGATCAGGTGCCCTGCAGATTGAGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS GCA 72 bp GCACGCGCACGGTGTAGGTCTCGTCTTCCAGCAGGCTaGCCACAGTGGTCAGGAGACTGTCGTCCACATTGT +
Preference number: 6 (lower is better)
Translates to: ARARCRSRLPAG*PQWSGDCRPHC
Trigger: ACAATGTGGACGACAGTCTCCTGACCACTGTGGGCAGCCTGCTGGAAGACGAGACCTACACCGTGCGCGTGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS GCA 72 bp CCAGCACTGCTCCCTTGGTCACCACCACCTTCGGTTTaGTGCGAGCGCCATCGCCTTTCATGGTATACGCGG +
Preference number: 6 (lower is better)
Translates to: PALLPWSPPPSV*CERHRLSWYTR
Trigger: CCGCGTATACCATGAAAGGCGATGGCGCTCGCAGCAAACCGAAGGTGGTGGTGACCAAGGGAGCAGTGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CCA 72 bp TCGTACACGTTCTCATCCCGAGGCGTCCGAAGTGGCTaGATCCTCAGGACCGCCCCAGAGCTCTCGTCAAAG +
Preference number: 6 (lower is better)
Translates to: SYTFSSRGVRSG*ILRTAPELSSK
Trigger: CTTTGACGAGAGCTCTGGGGCGGTCCTGAGGATCCAGCCACTTCGGACGCCTCGGGATGAGAACGTGTACGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp CCTGTGCGGGTCACCACCGATTCACTGGGAGGGCCCTaGCCAATGGAGTTGACAGCTGACACCCAGATCTCA +
Preference number: 6 (lower is better)
Translates to: PVRVTTDSLGGP*PMELTADTQIS
Trigger: TGAGATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGGCCCTCCCAGTGAATCGGTGGTGACCCGCACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp GTGCACTCCACGAGAGCCCAATGCTGGTCTCTGACTTaGCCTCAGCCCGCAAGTTCATGGGCTGGCCAGGAA +
Preference number: 6 (lower is better)
Translates to: VHSTRAQCWSLT*PQPASSWAGQE
Trigger: TTCCTGGCCAGCCCATGAACTTGCGGGCTGAGGCCAAGTCAGAGACCAGCATTGGGCTCTCGTGGAGTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp GCTTCTGGTTCCCAGGATGGAAGACAGCTGGCAGGATaGAGAATCGAGCGGCGATGTAGGGCCGAGGCACCT +
Preference number: 6 (lower is better)
Translates to: ASGSQDGRQLAG*RIERRCRAEAP
Trigger: AGGTGCCTCGGCCCTACATCGCCGCTCGATTCTCCATCCTGCCAGCTGTCTTCCATCCTGGGAACCAGAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 72 bp CCCAGCACTGCTCCCTTGGTCACCACCACCTTCGGTTaGCTGCGAGCGCCATCGCCTTTCATGGTATACGCG +
Preference number: 6 (lower is better)
Translates to: PSTAPLVTTTFG*LRAPSPFMVYA
Trigger: CGCGTATACCATGAAAGGCGATGGCGCTCGCAGCAAACCGAAGGTGGTGGTGACCAAGGGAGCAGTGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000225456.2
CDS CAA 90 bp ACCACGATGAAACCGTCATTGTCGGGCTTCGGGGCGACGCTAGGCTaGCCACTGAGCATGTTAAAGGCGGTCCTGGCAGTGACCGTCTGC +
Preference number: 6 (lower is better)
Translates to: TTMKPSLSGFGATLG*PLSMLKAVLAVTVC
Trigger: GCAGACGGTCACTGCCAGGACCGCCTTTAACATGCTCAGTGGCAAGCCTAGCGTCGCCCCGAAGCCCGACAATGACGGTTTCATCGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
ENSMUST00000224777.2
CDS CCA 72 bp TACTCAGGTACCCCGTGGTCGGGCCATGCCGTGAACTaGAAATGTCGCACCTCACGCTTCTCGCTAGAGCCA +
Preference number: 6 (lower is better)
Translates to: YSGTPWSGHAVN*KCRTSRFSLEP
Trigger: TGGCTCTAGCGAGAAGCGTGAGGTGCGACATTTCCAGTTCACGGCATGGCCCGACCACGGGGTACCTGAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp CTGCCCAGGTATTCCAAAGCCGCCTGGAAGCAGAACTaGTACTCGTCCTCTGTCTGCACCATGGCAGGCCTC +
Preference number: 6 (lower is better)
Translates to: LPRYSKAAWKQN*YSSSVCTMAGL
Trigger: GAGGCCTGCCATGGTGCAGACAGAGGACGAGTACCAGTTCTGCTTCCAGGCGGCTTTGGAATACCTGGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 72 bp AGGCTGCCCACAGTGGTCAGGAGACTGTCGTCCACATaGTGTTTCTGCCAGTTGCCCACTGGGTGTTCCGGC +
Preference number: 6 (lower is better)
Translates to: RLPTVVRRLSST*CFCQLPTGCSG
Trigger: GCCGGAACACCCAGTGGGCAACTGGCAGAAACACAATGTGGACGACAGTCTCCTGACCACTGTGGGCAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 72 bp AAACCGTCATTGTCGGGCTTCGGGGCGACGCTAGGCTaGCCACTGAGCATGTTAAAGGCGGTCCTGGCAGTG +
Preference number: 6 (lower is better)
Translates to: KPSLSGFGATLG*PLSMLKAVLAV
Trigger: CACTGCCAGGACCGCCTTTAACATGCTCAGTGGCAAGCCTAGCGTCGCCCCGAAGCCCGACAATGACGGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
ENSMUST00000224777.2
CDS CAA 90 bp GTGCGGGTCACCACCGATTCACTGGGAGGGCCCTGGCCAATGGAGTaGACAGCTGACACCCAGATCTCATACTCAGAATTGGGGCTCAGG +
Preference number: 6 (lower is better)
Translates to: VRVTTDSLGGPWPME*TADTQISYSELGLR
Trigger: CCTGAGCCCCAATTCTGAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGGCCCTCCCAGTGAATCGGTGGTGACCCGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 90 bp TCTTCCAGCAGGCTGCCCACAGTGGTCAGGAGACTGTCGTCCACATaGTGTTTCTGCCAGTTGCCCACTGGGTGTTCCGGCTCCATGGTA +
Preference number: 6 (lower is better)
Translates to: SSSRLPTVVRRLSST*CFCQLPTGCSGSMV
Trigger: TACCATGGAGCCGGAACACCCAGTGGGCAACTGGCAGAAACACAATGTGGACGACAGTCTCCTGACCACTGTGGGCAGCCTGCTGGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 90 bp AAGTTCTTTGGGGAGACTGCTCCCTTGGTCACCACCACCTTCGGTTaGCTGCGAGCGCCATCGCCTTTCATGGTATACGCGGCTACTGTG +
Preference number: 6 (lower is better)
Translates to: KFFGETAPLVTTTFG*LRAPSPFMVYAATV
Trigger: CACAGTAGCCGCGTATACCATGAAAGGCGATGGCGCTCGCAGCAAACCGAAGGTGGTGGTGACCAAGGGAGCAGTCTCCCCAAAGAACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224777.2
CDS TCA 72 bp GGCAGCTGGTCCTCTCGAAGGACGGTGAGCTTTGCATaGATTGTGATTTCGCCCACCGAGTTCTGGGCCACA +
Preference number: 6 (lower is better)
Translates to: GSWSSRRTVSFA*IVISPTEFWAT
Trigger: TGTGGCCCAGAACTCGGTGGGCGAAATCACAATTCATGCAAAGCTCACCGTCCTTCGAGAGGACCAGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS GCA 72 bp AGGAGGCAGCTGGTCCTCTCGAAGGACGGTGAGCTTTaGATGAATTGTGATTTCGCCCACCGAGTTCTGGGC +
Preference number: 6 (lower is better)
Translates to: RRQLVLSKDGEL*MNCDFAHRVLG
Trigger: GCCCAGAACTCGGTGGGCGAAATCACAATTCATGCAAAGCTCACCGTCCTTCGAGAGGACCAGCTGCCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS GCA 72 bp CCTGGCTCCAAGCCCCTGTTGTCAAAGCCACCATATTaGTTCTGGTTCCCAGGATGGAAGACAGCTGGCAGG +
Preference number: 6 (lower is better)
Translates to: PGSKPLLSKPPY*FWFPGWKTAGR
Trigger: CCTGCCAGCTGTCTTCCATCCTGGGAACCAGAAGCAATATGGTGGCTTTGACAACAGGGGCTTGGAGCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp CAAGTGATATTCACATTCCCACCGGGCATGATCTCGTaGCTCATGGGCAGGATGGAGAAGCGTGGGGCCACA +
Preference number: 6 (lower is better)
Translates to: QVIFTFPPGMIS*LMGRMEKRGAT
Trigger: TGTGGCCCCACGCTTCTCCATCCTGCCCATGAGCCACGAGATCATGCCCGGTGGGAATGTGAATATCACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp ACCATATTGCTTCTGGTTCCCAGGATGGAAGACAGCTaGCAGGATGGAGAATCGAGCGGCGATGTAGGGCCG +
Preference number: 6 (lower is better)
Translates to: TILLLVPRMEDS*QDGESSGDVGP
Trigger: CGGCCCTACATCGCCGCTCGATTCTCCATCCTGCCAGCTGTCTTCCATCCTGGGAACCAGAAGCAATATGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 72 bp GCCTGGCTCCAAGCCCCTGTTGTCAAAGCCACCATATaGCTTCTGGTTCCCAGGATGGAAGACAGCTGGCAG +
Preference number: 6 (lower is better)
Translates to: AWLQAPVVKATI*LLVPRMEDSWQ
Trigger: CTGCCAGCTGTCTTCCATCCTGGGAACCAGAAGCAATATGGTGGCTTTGACAACAGGGGCTTGGAGCCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 72 bp TTCACTGGGAGGGCCCTGGCCAATGGAGTTGACAGCTaGCACCCAGATCTCATACTCAGAATTGGGGCTCAG +
Preference number: 6 (lower is better)
Translates to: FTGRALANGVDS*HPDLILRIGAQ
Trigger: CTGAGCCCCAATTCTGAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGGCCCTCCCAGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 72 bp CCACCGATTCACTGGGAGGGCCCTGGCCAATGGAGTTaGCAGCTGACACCCAGATCTCATACTCAGAATTGG +
Preference number: 6 (lower is better)
Translates to: PPIHWEGPGQWS*QLTPRSHTQNW
Trigger: CCAATTCTGAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATTGGCCAGGGCCCTCCCAGTGAATCGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS TCA 72 bp GGCCACCTCGAGACTTCCGAAGTGGGACCATCACAATaGAGTAGTTCTGCACGGTCACAGGACTCTGGCCAT +
Preference number: 6 (lower is better)
Translates to: GHLETSEVGPSQ*SSSARSQDSGH
Trigger: ATGGCCAGAGTCCTGTGACCGTGCAGAACTACTTCATTGTGATGGTCCCACTTCGGAAGTCTCGAGGTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
ENSMUST00000224777.2
CDS CCA 72 bp TCCTCAGGACCGCCCCAGAGCTCTCGTCAAAGTCAATaGTCTCGAAGCGCTGTGAGTTCACTTTCTTGCCCT +
Preference number: 6 (lower is better)
Translates to: SSGPPQSSRQSQ*SRSAVSSLSCP
Trigger: AGGGCAAGAAAGTGAACTCACAGCGCTTCGAGACCATTGACTTTGACGAGAGCTCTGGGGCGGTCCTGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp TCCATGTCCTCTGGACTACCTAGTAGGACAGGGAACTaGCCACCTCGAGACTTCCGAAGTGGGACCATCACA +
Preference number: 6 (lower is better)
Translates to: SMSSGLPSRTGN*PPRDFRSGTIT
Trigger: TGTGATGGTCCCACTTCGGAAGTCTCGAGGTGGCCAGTTCCCTGTCCTACTAGGTAGTCCAGAGGACATGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
ENSMUST00000224777.2
CDS CCA 72 bp ACCATTTCATATTCGGCAGTGTCGTCCATCTCCCACTaGGCATCCGCCAGCATGATGTCCTTGATGCGCGGT +
Preference number: 6 (lower is better)
Translates to: TISYSAVSSISH*ASASMMSLMRG
Trigger: ACCGCGCATCAAGGACATCATGCTGGCGGATGCCCAGTGGGAGATGGACGACACTGCCGAATATGAAATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225456.2
CDS CCA 72 bp TCCAAGCCCCTGTTGTCAAAGCCACCATATTGCTTCTaGTTCCCAGGATGGAAGACAGCTGGCAGGATGGAG +
Preference number: 6 (lower is better)
Translates to: SKPLLSKPPYCF*FPGWKTAGRME
Trigger: CTCCATCCTGCCAGCTGTCTTCCATCCTGGGAACCAGAAGCAATATGGTGGCTTTGACAACAGGGGCTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp CAACACAGCAAGCACAAAGAGGACATAGCGGTGGCCTaGCTCCAAGCCCCTGTTGTCAAAGCCACCATATTG +
Preference number: 6 (lower is better)
Translates to: QHSKHKEDIAVA*LQAPVVKATIL
Trigger: CAATATGGTGGCTTTGACAACAGGGGCTTGGAGCCAGGCCACCGCTATGTCCTCTTTGTGCTTGCTGTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 72 bp GTGCGGGGCTCTGAGTCCTTGCGTTTGCTGTCAGGTTaGTTCTTGTACAGCAGGATGGCAATCACGATGCAG +
Preference number: 6 (lower is better)
Translates to: VRGSESLRLLSG*FLYSRMAITMQ
Trigger: CTGCATCGTGATTGCCATCCTGCTGTACAAGAACAAACCTGACAGCAAACGCAAGGACTCAGAGCCCCGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS TCA 72 bp GGTGAGCCCATTGTACTGAATCTTGTAGGGTGTGGGTaGGTTATAGTTGTCGGGGAACTCCCAGCTCAGCAG +
Preference number: 6 (lower is better)
Translates to: GEPIVLNLVGCG*VIVVGELPAQQ
Trigger: CTGCTGAGCTGGGAGTTCCCCGACAACTATAACTCACCCACACCCTACAAGATTCAGTACAATGGGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
ENSMUST00000224777.2
CDS GCA 72 bp TCAGGAGACTGTCGTCCACATTGTGTTTCTGCCAGTTaGCCACTGGGTGTTCCGGCTCCATGGTATAGTAGA +
Preference number: 6 (lower is better)
Translates to: SGDCRPHCVSAS*PLGVPAPWYSR
Trigger: TCTACTATACCATGGAGCCGGAACACCCAGTGGGCAACTGGCAGAAACACAATGTGGACGACAGTCTCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp ACTGTCGTCCACATTGTGTTTCTGCCAGTTGCCCACTaGGTGTTCCGGCTCCATGGTATAGTAGACACGGTA +
Preference number: 6 (lower is better)
Translates to: TVVHIVFLPVAH*VFRLHGIVDTV
Trigger: TACCGTGTCTACTATACCATGGAGCCGGAACACCCAGTGGGCAACTGGCAGAAACACAATGTGGACGACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CCA 72 bp GCCACGGTTGGTGAGCACGAAATTATAGAAGGTGTGTaGCTTGAGGTGTGTGATCAGCTTCTTGGTCGTGCG +
Preference number: 6 (lower is better)
Translates to: ATVGEHEIIEGV*LEVCDQLLGRA
Trigger: CGCACGACCAAGAAGCTGATCACACACCTCAAGCCACACACCTTCTATAATTTCGTGCTCACCAACCGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
ENSMUST00000224777.2
CDS CCA 72 bp AAGCCGTATGTCTCGGTGCCTCGGTTAGGCCAGTATTaGTCACATTTGATCCGTGATTTCTCCTCCAGTCGC +
Preference number: 6 (lower is better)
Translates to: KPYVSVPRLGQY*SHLIRDFSSSR
Trigger: GCGACTGGAGGAGAAATCACGGATCAAATGTGACCAATACTGGCCTAACCGAGGCACCGAGACATACGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 90 bp AGGTCGGCATTGTTCAGTAAGCATTTGGTGCGGGGCTCTGAGTCCTaGCGTTTGCTGTCAGGTTTGTTCTTGTACAGCAGGATGGCAATC +
Preference number: 6 (lower is better)
Translates to: RSALFSKHLVRGSES*RLLSGLFLYSRMAI
Trigger: GATTGCCATCCTGCTGTACAAGAACAAACCTGACAGCAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGAACAATGCCGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS CAA 90 bp AGGTCGGCATTGTTCAGTAAGCATTTGGTGCGGGGCTCTGAGTCCTaGCGTTTGTTCTTGTACAGCAGGATGGCAATCACGATGCAGATG +
Preference number: 6 (lower is better)
Translates to: RSALFSKHLVRGSES*RLFLYSRMAITMQM
Trigger: CATCTGCATCGTGATTGCCATCCTGCTGTACAAGAACAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGAACAATGCCGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223859.2
CDS CAA 72 bp AGTAAGCATTTGGTGCGGGGCTCTGAGTCCTTGCGTTaGCTGTCAGGTTTGTTCTTGTACAGCAGGATGGCA +
Preference number: 6 (lower is better)
Translates to: SKHLVRGSESLR*LSGLFLYSRMA
Trigger: TGCCATCCTGCTGTACAAGAACAAACCTGACAGCAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS CAA 72 bp CATTTGGTGCGGGGCTCTGAGTCCTTGCGTTTGTTCTaGTACAGCAGGATGGCAATCACGATGCAGATGATG +
Preference number: 6 (lower is better)
Translates to: HLVRGSESLRLF*YSRMAITMQMM
Trigger: CATCATCTGCATCGTGATTGCCATCCTGCTGTACAAGAACAAACGCAAGGACTCAGAGCCCCGCACCAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223859.2
CDS CAA 72 bp AGTAAGCATTTGGTGCGGGGCTCTGAGTCCTTGCGTTaGTTCTTGTACAGCAGGATGGCAATCACGATGCAG +
Preference number: 6 (lower is better)
Translates to: SKHLVRGSESLR*FLYSRMAITMQ
Trigger: CTGCATCGTGATTGCCATCCTGCTGTACAAGAACAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223859.2
CDS CAA 90 bp AAGCATTTGGTGCGGGGCTCTGAGTCCTTGCGTTTGCTGTCAGGTTaGTTCTTGTACAGCAGGATGGCAATCACGATGCAGATGATGAAG +
Preference number: 6 (lower is better)
Translates to: KHLVRGSESLRLLSG*FLYSRMAITMQMMK
Trigger: CTTCATCATCTGCATCGTGATTGCCATCCTGCTGTACAAGAACAAACCTGACAGCAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS CAA 90 bp GCATTGTTCAGTAAGCATTTGGTGCGGGGCTCTGAGTCCTTGCGTTaGCTGTCAGGTTTGTTCTTGTACAGCAGGATGGCAATCACGATG +
Preference number: 6 (lower is better)
Translates to: ALFSKHLVRGSESLR*LSGLFLYSRMAITM
Trigger: CATCGTGATTGCCATCCTGCTGTACAAGAACAAACCTGACAGCAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGAACAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS GCA 72 bp TGTTCAGTAAGCATTTGGTGCGGGGCTCTGAGTCCTTaGGTTTGTTCTTGTACAGCAGGATGGCAATCACGA +
Preference number: 6 (lower is better)
Translates to: CSVSIWCGALSP*VCSCTAGWQSR
Trigger: TCGTGATTGCCATCCTGCTGTACAAGAACAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223859.2
CDS CAA 72 bp GGCTCTGAGTCCTTGCGTTTGCTGTCAGGTTTGTTCTaGTACAGCAGGATGGCAATCACGATGCAGATGATG +
Preference number: 6 (lower is better)
Translates to: GSESLRLLSGLF*YSRMAITMQMM
Trigger: CATCATCTGCATCGTGATTGCCATCCTGCTGTACAAGAACAAACCTGACAGCAAACGCAAGGACTCAGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
CDS CAA 72 bp AAATGTCGCACCTCACGCTTCTCGCTAGAGCCATTCTaGTGTAGAGAAAAAGTCCTGACGCAGAAGGTAGCC +
Preference number: 6 (lower is better)
Translates to: KCRTSRFSLEPF*CREKVLTQKVA
Trigger: GGCTACCTTCTGCGTCAGGACTTTTTCTCTACACAAGAATGGCTCTAGCGAGAAGCGTGAGGTGCGACATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 72 bp TACTGGTGGCACTTTTCCCGGCCCATTTCTCGGAGCTaGGTGAGCATTACGACAATAGTAGAGTTGTTCTCC +
Preference number: 6 (lower is better)
Translates to: YWWHFSRPISRS*VSITTIVELFS
Trigger: GGAGAACAACTCTACTATTGTCGTAATGCTCACCAAGCTCCGAGAAATGGGCCGGGAAAAGTGCCACCAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
CDS CAA 72 bp TTGTTCAGTAAGCATTTGGTGCGGGGCTCTGAGTCCTaGCGTTTGTTCTTGTACAGCAGGATGGCAATCACG +
Preference number: 6 (lower is better)
Translates to: LFSKHLVRGSES*RLFLYSRMAIT
Trigger: CGTGATTGCCATCCTGCTGTACAAGAACAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223859.2
CDS CAA 90 bp GCATTGTTCAGTAAGCATTTGGTGCGGGGCTCTGAGTCCTTGCGTTaGTTCTTGTACAGCAGGATGGCAATCACGATGCAGATGATGAAG +
Preference number: 6 (lower is better)
Translates to: ALFSKHLVRGSESLR*FLYSRMAITMQMMK
Trigger: CTTCATCATCTGCATCGTGATTGCCATCCTGCTGTACAAGAACAAACGCAAGGACTCAGAGCCCCGCACCAAATGCTTACTGAACAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223859.2
CDS TCA 72 bp GTTATAGTTGTCGGGGAACTCCCAGCTCAGCAGCACTaGAGTCTTCATGATCATCTTCACCTTGAAGTTCTT +
Preference number: 6 (lower is better)
Translates to: VIVVGELPAQQH*SLHDHLHLEVL
Trigger: AAGAACTTCAAGGTGAAGATGATCATGAAGACTTCAGTGCTGCTGAGCTGGGAGTTCCCCGACAACTATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067538.6
ENSMUST00000086828.10
ENSMUST00000223859.2
ENSMUST00000224777.2