RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTPRE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041836

Ensembl transcript IDs: ENSMUST00000073961.8, ENSMUST00000209256.2, ENSMUST00000209979.2, ENSMUST00000210833.2, ENSMUST00000211140.2, ENSMUST00000211788.2

Found 389 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATaGCCCAGCCTCCCACGTGCTAGCAGTGCAGTGATGCACTGCCGT +
Preference number: 1 (lower is better)
Translates to: HCSPSWPGLTWTKSL*PSLPRASSAVMHCR
Trigger: ACGGCAGTGCATCACTGCACTGCTAGCACGTGGGAGGCTGGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 90 bp ACAGGCAGCTGTGTCAGTGGGCGGGCCGTTGGGAATGAGCTTGAGTaGATTCTGAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGG +
Preference number: 1 (lower is better)
Translates to: TGSCVSGRAVGNELE*ILSQAHRQAASGSR
Trigger: CCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTCAGAATCCACTCAAGCTCATTCCCAACGGCCCGCCCACTGACACAGCTGCCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR TCA 90 bp GCTGTGTCAGTGGGCGGGCCGTTGGGAATGAGCTTGAGTGGATTCTaGGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAG +
Preference number: 1 (lower is better)
Translates to: AVSVGGPLGMSLSGF*ARHTGRQQVVPGTQ
Trigger: CTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTCAGAATCCACTCAAGCTCATTCCCAACGGCCCGCCCACTGACACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR TCA 90 bp GTGGTGGTGGTGACAGTGGCCACTGTCTGCTTTCATCCTGCATGCTaGGTGCCAGCTTGTGCCTCTGGATGGGACACTCAGAGCTGCGGG +
Preference number: 1 (lower is better)
Translates to: VVVVTVATVCFHPAC*VPACASGWDTQSCG
Trigger: CCCGCAGCTCTGAGTGTCCCATCCAGAGGCACAAGCTGGCACTCAGCATGCAGGATGAAAGCAGACAGTGGCCACTGTCACCACCACCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 90 bp ATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTTaGCACATTCCGATGCCCTGGGTGCGACAGTTGGTGGGGAGAGTA +
Preference number: 1 (lower is better)
Translates to: MAETQDSTKAPMHTV*HIPMPWVRQLVGRV
Trigger: TACTCTCCCCACCAACTGTCGCACCCAGGGCATCGGAATGTGGCAAACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR TCA 90 bp CCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATaGGACAAGCTGTTTAGAAACAGGCAGGGTCTCTGCCTGCAGGAG +
Preference number: 1 (lower is better)
Translates to: PQLCPQERGFCFSLE*DKLFRNRQGLCLQE
Trigger: CTCCTGCAGGCAGAGACCCTGCCTGTTTCTAAACAGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 90 bp TCCTTATGCCCCAGCCTCCCACGTGCTAGCAGTGCAGTGATGCACTaGCGTGTCTGCTTCCACTCTGATCTTTCAAATGCAAGGATGGAC +
Preference number: 1 (lower is better)
Translates to: SLCPSLPRASSAVMH*RVCFHSDLSNARMD
Trigger: GTCCATCCTTGCATTTGAAAGATCAGAGTGGAAGCAGACACGGCAGTGCATCACTGCACTGCTAGCACGTGGGAGGCTGGGGCATAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 90 bp TGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTaGAATGAGACAAGCTGTTTAGAAACAGGCAGGGTCTCTGCCTGC +
Preference number: 1 (lower is better)
Translates to: CCPNCAHRSVASVFL*NETSCLETGRVSAC
Trigger: GCAGGCAGAGACCCTGCCTGTTTCTAAACAGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 90 bp CTGTCCCGCTTCAGTTACAGCAAGGCGTTGAGCTTGGGTCTAAGATaGAGACAAATGAGACCACTGGCCAGGGAAAGCTCCTCCATCTTC +
Preference number: 1 (lower is better)
Translates to: LSRFSYSKALSLGLR*RQMRPLARESSSIF
Trigger: GAAGATGGAGGAGCTTTCCCTGGCCAGTGGTCTCATTTGTCTCCATCTTAGACCCAAGCTCAACGCCTTGCTGTAACTGAAGCGGGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 90 bp GTGTCTGCTTCCACTCTGATCTTTCAAATGCAAGGATGGACCACATaGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTT +
Preference number: 1 (lower is better)
Translates to: VSASTLIFQMQGWTT*LRPRTLPKPPCTLF
Trigger: AAACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCATCCTTGCATTTGAAAGATCAGAGTGGAAGCAGACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGCTGTaGTTGAGTATCAGCAAATTGACAGTGCAACAGTTTGTGGCCATT +
Preference number: 1 (lower is better)
Translates to: VCVCVCVCVCVCVQL*LSISKLTVQQFVAI
Trigger: AATGGCCACAAACTGTTGCACTGTCAATTTGCTGATACTCAACCACAGCTGCACACACACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 90 bp GGAAAGTCACCACCATCTACACCTTGTACATCTGAGACCTGGATTTaGGTTTCAAAACCCTCTGGGTGTTTGTTGTTTGTTGTGTTACAG +
Preference number: 1 (lower is better)
Translates to: GKSPPSTPCTSETWI*VSKPSGCLLFVVLQ
Trigger: CTGTAACACAACAAACAACAAACACCCAGAGGGTTTTGAAACCCAAATCCAGGTCTCAGATGTACAAGGTGTAGATGGTGGTGACTTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 90 bp ATCTCTTTATCAAGCCTACAGTGGCACTACACAGCCTCTCATGAATaGCTTTTAAAACTCATAGGAAAGTCACCACCATCTACACCTTGT +
Preference number: 1 (lower is better)
Translates to: ISLSSLQWHYTASHE*LLKLIGKSPPSTPC
Trigger: ACAAGGTGTAGATGGTGGTGACTTTCCTATGAGTTTTAAAAGGCATTCATGAGAGGCTGTGTAGTGCCACTGTAGGCTTGATAAAGAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR TCA 90 bp TTCTTACAAACCATCTTAACTTTTTACAAAGAAAATCTGACATCCTaGAATGGCTATCAGCAAATTGACAGTGCAACAGTTTGTGGCCAT +
Preference number: 1 (lower is better)
Translates to: FLQTILTFYKENLTS*NGYQQIDSATVCGH
Trigger: ATGGCCACAAACTGTTGCACTGTCAATTTGCTGATAGCCATTTCAGGATGTCAGATTTTCTTTGTAAAAAGTTAAGATGGTTTGTAAGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAAACAGGCAGCCAGCCCTaGCTGCAGCTGGTGGTGGTG +
Preference number: 2 (lower is better)
Translates to: QVLPQLCPQERGFCFSLETGSQP*LQLVVV
Trigger: CACCACCACCAGCTGCAGGCAGGGCTGGCTGCCTGT...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAACACTGTAGCCCAAGCTaGCCTGGCCTGACCTGGACC +
Preference number: 2 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEHCSPS*PGLTWT
Trigger: GGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTG...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCGATGGACCACATGGCTaGGACCCAGGACTCTACCAA +
Preference number: 2 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPDGPHG*DPGLYQ
Trigger: TTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCATC...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCACAAGCTGGCCTGGCCTaGCCTGGACCAAATCCTTAT +
Preference number: 2 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAQAGLA*PGPNPY
Trigger: ATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTG...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTGGCAGGGTCTCTGCCTaGAGGAGAACCTGGGGCAGC +
Preference number: 2 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAGRVSA*RRTWGS
Trigger: GCTGCCCCAGGTTCTCCTGCAGGCAGAGACCCTGCC...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCGGCAGGGTCTCTGCCTaGAGGAGAACCTGGGGCAGC +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCGRVSA*RRTWGS
Trigger: GCTGCCCCAGGTTCTCCTGCAGGCAGAGACCCTGCC...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCACAGGCAGGCAGCAAGTaGTTCCAGGAACACAGCTCA +
Preference number: 2 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAQAGSK*FQEHSS
Trigger: TGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTG...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGCAAGCTGGCCTGGCCTaGCCTGGACCAAATCCTTAT +
Preference number: 2 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKQAGLA*PGPNPY
Trigger: ATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTG...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTCAGAGCTGCGGGGCTTaGGATAAGCGTGGTGACCCG +
Preference number: 2 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAQSCGA*DKRGDP
Trigger: CGGGTCACCACGCTTATCTCAAGCCCCGCAGCTCTG...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAACAGTGCGCCTGTCACTaGCACCTGAACTCAGAGGTC +
Preference number: 2 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEQCACH*HLNSEV
Trigger: GACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTG...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGCTGAGTGCCAGCTTGTaGCTCTGGATGGGACACTCA +
Preference number: 2 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKLSASL*LWMGHS
Trigger: TGAGTGTCCCATCCAGAGGCACAAGCTGGCACTCAG...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCACACCATGTGACACCTaGTGTGGGACACCACATAAC +
Preference number: 2 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPTPCDT*CGTPHN
Trigger: GTTATGTGGTGTCCCACATCAGGTGTCACATGGTGT...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCCTACCAAAGCCCCCATaGACACTGTTTGCCACATTC +
Preference number: 2 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPLPKPP*TLFATF
Trigger: GAATGTGGCAAACAGTGTGCATGGGGGCTTTGGTAG...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCTCTGAGACCTGGATTTaGGTTTCAAAACCCTCTGGG +
Preference number: 2 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGSETWI*VSKPSG
Trigger: CCCAGAGGGTTTTGAAACCCAAATCCAGGTCTCAGA...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAACAGGCAGGCAGCAAGTaGTTCCAGGAACACAGCTCA +
Preference number: 2 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEQAGSK*FQEHSS
Trigger: TGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTG...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCAGTGCGCCTGTCACTaGCACCTGAACTCAGAGGTC +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCQCACH*HLNSEV
Trigger: GACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACCTGTGCTCCAAGGCTaGTCAGAGAAGGGGAGCTCC +
Preference number: 2 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVPVLQG*SEKGSS
Trigger: GGAGCTCCCCTTCTCTGAGCAGCCTTGGAGCACAGG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAACTCAGATGGCTAGTTTaGAGGGTACTGGAGGCCTGT +
Preference number: 2 (lower is better)
Translates to: QVLPQLCPQERGFCFSLELRWLV*RVLEAC
Trigger: ACAGGCCTCCAGTACCCTCCAAACTAGCCATCTGAG...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTGATGGACCACATGGCTaGGACCCAGGACTCTACCAA +
Preference number: 2 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQADGPHG*DPGLYQ
Trigger: TTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCATC...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCAAGCTGGCCTGGCCTaGCCTGGACCAAATCCTTAT +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCQAGLA*PGPNPY
Trigger: ATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACCTGTCACTGCCACCTaGACTCAGAGGTCTCAGCAG +
Preference number: 2 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVPVTAT*TQRSQQ
Trigger: CTGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCACCTGTATGAAGCAGTaGCAGACCCTGGGGTTGTCC +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCTCMKQ*QTLGLS
Trigger: GGACAACCCCAGGGTCTGTCACTGCTTCATACAGGT...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAAGGCTTGGGACCCATGTaGGGTCACCTTAATTCTAGT +
Preference number: 2 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEGLGPM*GHLNSS
Trigger: ACTAGAATTAAGGTGACCTCACATGGGTCCCAAGCC...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTGTAACTAAGTTGGGGTaGCAAGGTGCGTGGCCGAAC +
Preference number: 2 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAVTKLG*QGAWPN
Trigger: GTTCGGCCACGCACCTTGGCACCCCAACTTAGTTAC...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCGTAACTAAGTTGGGGTaGCAAGGTGCGTGGCCGAAC +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCVTKLG*QGAWPN
Trigger: GTTCGGCCACGCACCTTGGCACCCCAACTTAGTTAC...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATCCAAAGTACAAGTGCTaGCCCAACTGTGCCCACAGG +
Preference number: 2 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDPKYKC*PNCAHR
Trigger: CCTGTGGGCACAGTTGGGGCAGCACTTGTACTTTGG...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCCAAAGTACAAGTGCTaGCCCAACTGTGCCCACAGG +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCPKYKC*PNCAHR
Trigger: CCTGTGGGCACAGTTGGGGCAGCACTTGTACTTTGG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCCTCCAAAGTACAAGTaGTGCCCCAACTGTGCCCAC +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCPPKYK*CPNCAH
Trigger: GTGGGCACAGTTGGGGCAGCACTTGTACTTTGGAGG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGTTTCAAATGCAAGGATaGACCACATGGCTGAGACCC +
Preference number: 2 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKFQMQG*TTWLRP
Trigger: GGGTCTCAGCCATGTGGTCCATCCTTGCATTTGAAA...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGTCTGAGACCTGGATTTaGGTTTCAAAACCCTCTGGG +
Preference number: 2 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKSETWI*VSKPSG
Trigger: CCCAGAGGGTTTTGAAACCCAAATCCAGGTCTCAGA...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAGTGTGTGTGCAGCTGTaGTTGAGTATCAGCAAATTG +
Preference number: 2 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAVCVQL*LSISKL
Trigger: CAATTTGCTGATACTCAACCACAGCTGCACACACAC...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCATGTCTGCTTCCACTCTaGTCTTTCAAATGCAAGGAT +
Preference number: 2 (lower is better)
Translates to: YPLRQCACHCHLNSEVSACLLPL*SFKCKD
Trigger: ATCCTTGCATTTGAAAGATCAGAGTGGAAGCAGACA...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATTTTCATCCTGCATGCTaGGTGCCAGCTTGTGCCTCT +
Preference number: 2 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDFHPAC*VPACAS
Trigger: AGAGGCACAAGCTGGCACTCAGCATGCAGGATGAAA...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCCAGTGCGCCTGTCACTaGCACCTGAACTCAGAGGTC +
Preference number: 2 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSQCACH*HLNSEV
Trigger: GACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTG...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACTGAGTGCCAGCTTGTaGCTCTGGATGGGACACTCA +
Preference number: 2 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVLSASL*LWMGHS
Trigger: TGAGTGTCCCATCCAGAGGCACAAGCTGGCACTCAG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCATCCTGCATGCTGAGTaGCAGCTTGTGCCTCTGGAT +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCILHAE*QLVPLD
Trigger: ATCCAGAGGCACAAGCTGGCACTCAGCATGCAGGAT...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTCCATCTTCCATCTTCTaGCTGTGCTCCAAGGCTGCT +
Preference number: 2 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAPSSIF*LCSKAA
Trigger: AGCAGCCTTGGAGCACAGGCAGAAGATGGAAGATGG...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCAAGGATGGACCACATaGCTGAGACCCAGGACTCTA +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCQGWTT*LRPRTL
Trigger: TAGAGTCCTGGGTCTCAGCCATGTGGTCCATCCTTG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATCAAGGATGGACCACATaGCTGAGACCCAGGACTCTA +
Preference number: 2 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDQGWTT*LRPRTL
Trigger: TAGAGTCCTGGGTCTCAGCCATGTGGTCCATCCTTG...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCTGGCCTGGCCTGACCTaGACCAAATCCTTATGCCCC +
Preference number: 2 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSWPGLT*TKSLCP
Trigger: GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCA...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTCTCAGATGGCTAGTTTaGAGGGTACTGGAGGCCTGT +
Preference number: 2 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQALRWLV*RVLEAC
Trigger: ACAGGCCTCCAGTACCCTCCAAACTAGCCATCTGAG...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATCTCAGATGGCTAGTTTaGAGGGTACTGGAGGCCTGT +
Preference number: 2 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDLRWLV*RVLEAC
Trigger: ACAGGCCTCCAGTACCCTCCAAACTAGCCATCTGAG...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCGGGAATGAGCTTGAGTaGATTCTGAGCCAGGCACAC +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCGNELE*ILSQAH
Trigger: GTGTGCCTGGCTCAGAATCCACTCAAGCTCATTCCC...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATCTACCAAAGCCCCCATaGACACTGTTTGCCACATTC +
Preference number: 2 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDLPKPP*TLFATF
Trigger: GAATGTGGCAAACAGTGTGCATGGGGGCTTTGGTAG...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATTGTCTGCTTTCATCCTaGATGCTGAGTGCCAGCTTG +
Preference number: 2 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDCLLSS*MLSASL
Trigger: CAAGCTGGCACTCAGCATGCAGGATGAAAGCAGACA...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACCATCTTCCATCTTCTaGCTGTGCTCCAAGGCTGCT +
Preference number: 2 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVPSSIF*LCSKAA
Trigger: AGCAGCCTTGGAGCACAGGCAGAAGATGGAAGATGG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGTGTACATCTGAGACCTaGATTTGGGTTTCAAAACCC +
Preference number: 2 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKCTSET*IWVSKP
Trigger: GGGTTTTGAAACCCAAATCCAGGTCTCAGATGTACA...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAGTGCCCACAGGAGCGTaGCTTCTGTTTTTCTCTGGA +
Preference number: 2 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVVPTGA*LLFFSG
Trigger: TCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCAC...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCCAAGGATGGACCACATaGCTGAGACCCAGGACTCTA +
Preference number: 2 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSQGWTT*LRPRTL
Trigger: TAGAGTCCTGGGTCTCAGCCATGTGGTCCATCCTTG...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGCAGCTGTGGTTGAGTATCAGCAAATaGACAGTGCAACAGTTTGTGGCCATTCTACCGTGTGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: VCVCVCVQLWLSISK*TVQQFVAILPCVCV
Trigger: CACACACACACACGGTAGAATGGCCACAAACTGTTGCACTGTCAATTTGCTGATACTCAACCACAGCTGCACACACACACACACACACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCACACCATGTGACACCTaGTGTGGGACACCACATAAC +
Preference number: 2 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSTPCDT*CGTPHN
Trigger: GTTATGTGGTGTCCCACATCAGGTGTCACATGGTGT...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGACAGCCTCTCATGAATaGCTTTTAAAACTCATAGGA +
Preference number: 2 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKTASHE*LLKLIG
Trigger: TCCTATGAGTTTTAAAAGGCATTCATGAGAGGCTGT...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCTTATCAAGCCTACAGTaGCACTACACAGCCTCTCAT +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCLSSLQ*HYTASH
Trigger: ATGAGAGGCTGTGTAGTGCCACTGTAGGCTTGATAA...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 90 bp ACATCTGAGACCTGGATTTGGGTTTCAAAACCCTCTGGGTGTTTGTaGTTTGTTGTGTTACAGAGTCTCACTGTAGCCCAAGCTGGCCTG +
Preference number: 2 (lower is better)
Translates to: TSETWIWVSKPSGCL*FVVLQSLTVAQAGL
Trigger: CAGGCCAGCTTGGGCTACAGTGAGACTCTGTAACACAACAAACAACAAACACCCAGAGGGTTTTGAAACCCAAATCCAGGTCTCAGATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATTGTCTGCTTCCACTCTaGTCTTTCAAATGCAAGGAT +
Preference number: 2 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDCLLPL*SFKCKD
Trigger: ATCCTTGCATTTGAAAGATCAGAGTGGAAGCAGACA...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTTTCATCCTGCATGCTaGGTGCCAGCTTGTGCCTCT +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYFHPAC*VPACAS
Trigger: AGAGGCACAAGCTGGCACTCAGCATGCAGGATGAAA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTAACTACATTTACAGATaGATGATGTGTGACACCATG +
Preference number: 2 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVNYIYR*MMCDTM
Trigger: CATGGTGTCACACATCATGCATCTGTAAATGTAGTT...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACATCCTGCATGCTGAGTaGCAGCTTGTGCCTCTGGAT +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYILHAE*QLVPLD
Trigger: ATCCAGAGGCACAAGCTGGCACTCAGCATGCAGGAT...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 90 bp TGTACATCTGAGACCTGGATTTGGGTTTCAAAACCCTCTGGGTGTTaGTTGTTTGTTGTGTTACAGAGTCTCACTGTAGCCCAAGCTGGC +
Preference number: 2 (lower is better)
Translates to: CTSETWIWVSKPSGC*LFVVLQSLTVAQAG
Trigger: GCCAGCTTGGGCTACAGTGAGACTCTGTAACACAACAAACAACAAACACCCAGAGGGTTTTGAAACCCAAATCCAGGTCTCAGATGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGCTGTGGTaGAGTATCAGCAAATTGACAGTGCAACAGTTTGTGGCCATTCTA +
Preference number: 2 (lower is better)
Translates to: CVCVCVCVCVCVQLW*SISKLTVQQFVAIL
Trigger: TAGAATGGCCACAAACTGTTGCACTGTCAATTTGCTGATACTCAACCACAGCTGCACACACACACACACACACACACACACACACACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACACACCATGTGACACCTaGTGTGGGACACCACATAAC +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYTPCDT*CGTPHN
Trigger: GTTATGTGGTGTCCCACATCAGGTGTCACATGGTGT...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCTACACAGCCTCTCATaGATGCCTTTTAAAACTCAT +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCLHSLS*MPFKTH
Trigger: ATGAGTTTTAAAAGGCATTCATGAGAGGCTGTGTAG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCGTTCAAAGCCTTCAATaGGTTAGACCAGATGTCTTT +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCVQSLQ*VRPDVF
Trigger: AAAGACATCTGGTCTAACTCATTGAAGGCTTTGAAC...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACGGCTTGGGACCCATGTaGGGTCACCTTAATTCTAGT +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYGLGPM*GHLNSS
Trigger: ACTAGAATTAAGGTGACCTCACATGGGTCCCAAGCC...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTGTCTGCTTTCATCCTaGATGCTGAGTGCCAGCTTG +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYCLLSS*MLSASL
Trigger: CAAGCTGGCACTCAGCATGCAGGATGAAAGCAGACA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTGGTTTCAAAACCCTCTaGGTGTTTGTTGTTTGTTGT +
Preference number: 2 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAGFKTL*VFVVCC
Trigger: ACAACAAACAACAAACACCCAGAGGGTTTTGAAACC...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 90 bp CAGAGAACTAAGAAGGTTGTCGGTGTCATAAACACCGGAGCTTCTTaGAAGGAAGAAGAAAAGGACATGCCAGGTACACAGAGAAGATGC +
Preference number: 2 (lower is better)
Translates to: QRTKKVVGVINTGAS*KEEEKDMPGTQRRC
Trigger: GCATCTTCTCTGTGTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACACCGACAACCTTCTTAGTTCTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACTACACAGCCTCTCATaGATGCCTTTTAAAACTCAT +
Preference number: 2 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVLHSLS*MPFKTH
Trigger: ATGAGTTTTAAAAGGCATTCATGAGAGGCTGTGTAG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCGAAAATCTGACATCCTaGAATGGCTATCAGCAAATT +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCENLTS*NGYQQI
Trigger: AATTTGCTGATAGCCATTTCAGGATGTCAGATTTTC...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCAACTACATTTACAGATaGATGATGTGTGACACCATG +
Preference number: 2 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCNYIYR*MMCDTM
Trigger: CATGGTGTCACACATCATGCATCTGTAAATGTAGTT...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATACAGCCTCTCATGAATaGCTTTTAAAACTCATAGGA +
Preference number: 2 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDTASHE*LLKLIG
Trigger: TCCTATGAGTTTTAAAAGGCATTCATGAGAGGCTGT...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTTTCAAATGCAAGGATaGACCACATGGCTGAGACCC +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYFQMQG*TTWLRP
Trigger: GGGTCTCAGCCATGTGGTCCATCCTTGCATTTGAAA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCGGTTTCAAAACCCTCTaGGTGTTTGTTGTTTGTTGT +
Preference number: 2 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSGFKTL*VFVVCC
Trigger: ACAACAAACAACAAACACCCAGAGGGTTTTGAAACC...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTTATCAAGCCTACAGTaGCACTACACAGCCTCTCAT +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYLSSLQ*HYTASH
Trigger: ATGAGAGGCTGTGTAGTGCCACTGTAGGCTTGATAA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACGTGTGTGTGCAGCTGTaGTTGAGTATCAGCAAATTG +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYVCVQL*LSISKL
Trigger: CAATTTGCTGATACTCAACCACAGCTGCACACACAC...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAGCTTCTGTTTTTCTCTaGAATGAGACAAGCTGTTTA +
Preference number: 2 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVASVFL*NETSCL
Trigger: TAAACAGCTTGTCTCATTCCAGAGAAAAACAGAAGC...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCGAAAATCTGACATCCTaGAATGGCTATCAGCAAATT +
Preference number: 2 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSENLTS*NGYQQI
Trigger: AATTTGCTGATAGCCATTTCAGGATGTCAGATTTTC...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR GCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCAACTACATTTACAGATaGATGATGTGTGACACCATG +
Preference number: 2 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSNYIYR*MMCDTM
Trigger: CATGGTGTCACACATCATGCATCTGTAAATGTAGTT...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTGTACATCTGAGACCTaGATTTGGGTTTCAAAACCC +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYCTSET*IWVSKP
Trigger: GGGTTTTGAAACCCAAATCCAGGTCTCAGATGTACA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACGTTCAAAGCCTTCAATaGGTTAGACCAGATGTCTTT +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYVQSLQ*VRPDVF
Trigger: AAAGACATCTGGTCTAACTCATTGAAGGCTTTGAAC...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACGGTTTCAAAACCCTCTaGGTGTTTGTTGTTTGTTGT +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYGFKTL*VFVVCC
Trigger: ACAACAAACAACAAACACCCAGAGGGTTTTGAAACC...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR TCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTGTTTTTCTCTGGAATaGGACAAGCTGTTTAGAAAC +
Preference number: 2 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYCFSLE*DKLFRN
Trigger: GTTTCTAAACAGCTTGTCTCATTCCAGAGAAAAACA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 72 bp CCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATaGCCCAGCCTCCCACGTGCTAGCAGTGCAGTGATG +
Preference number: 3 (lower is better)
Translates to: PSWPGLTWTKSL*PSLPRASSAVM
Trigger: CATCACTGCACTGCTAGCACGTGGGAGGCTGGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR TCA 72 bp CCTACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTaGACTCAGAGGTCTCAGCAGCCTTTCCTCCAAAGG +
Preference number: 3 (lower is better)
Translates to: PTLSGSAPVTAT*TQRSQQPFLQR
Trigger: CCTTTGGAGGAAAGGCTGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 72 bp ACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATaGACACTGTTTGCCACATTCCGATGCCCTGGGTGC +
Preference number: 3 (lower is better)
Translates to: TWLRPRTLPKPP*TLFATFRCPGC
Trigger: GCACCCAGGGCATCGGAATGTGGCAAACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 72 bp GGTGGTGGTGACAGTGGCCACTGTCTGCTTTCATCCTaGATGCTGAGTGCCAGCTTGTGCCTCTGGATGGGA +
Preference number: 3 (lower is better)
Translates to: GGGDSGHCLLSS*MLSASLCLWMG
Trigger: TCCCATCCAGAGGCACAAGCTGGCACTCAGCATGCAGGATGAAAGCAGACAGTGGCCACTGTCACCACCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR TCA 72 bp GTGACAGTGGCCACTGTCTGCTTTCATCCTGCATGCTaGGTGCCAGCTTGTGCCTCTGGATGGGACACTCAG +
Preference number: 3 (lower is better)
Translates to: VTVATVCFHPAC*VPACASGWDTQ
Trigger: CTGAGTGTCCCATCCAGAGGCACAAGCTGGCACTCAGCATGCAGGATGAAAGCAGACAGTGGCCACTGTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 72 bp GAGACAAGCTGTTTAGAAACAGGCAGGGTCTCTGCCTaGAGGAGAACCTGGGGCAGCCCCAAGGTGAGGAAA +
Preference number: 3 (lower is better)
Translates to: ETSCLETGRVSA*RRTWGSPKVRK
Trigger: TTTCCTCACCTTGGGGCTGCCCCAGGTTCTCCTGCAGGCAGAGACCCTGCCTGTTTCTAAACAGCTTGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 72 bp AGACTAGAGGGATTGGCCCCTCCAAAGTACAAGTGCTaGCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTT +
Preference number: 3 (lower is better)
Translates to: RLEGLAPPKYKC*PNCAHRSVASV
Trigger: AACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTGTACTTTGGAGGGGCCAATCCCTCTAGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 72 bp CCCAGCCTCCCACGTGCTAGCAGTGCAGTGATGCACTaGCGTGTCTGCTTCCACTCTGATCTTTCAAATGCA +
Preference number: 3 (lower is better)
Translates to: PSLPRASSAVMH*RVCFHSDLSNA
Trigger: TGCATTTGAAAGATCAGAGTGGAAGCAGACACGGCAGTGCATCACTGCACTGCTAGCACGTGGGAGGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 72 bp GTTTGTTGTGTTACAGAGTCTCACTGTAGCCCAAGCTaGCCTGGCCTGACCTGGACCAAATCCTTATGCCCC +
Preference number: 3 (lower is better)
Translates to: VCCVTESHCSPS*PGLTWTKSLCP
Trigger: GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGACTCTGTAACACAACAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAGCTCAGATGGCTAGTTaGGAGGGTACTGGAGGCCTG +
Preference number: 3 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVAQMAS*EGTGGL
Trigger: CAGGCCTCCAGTACCCTCCAAACTAGCCATCTGAGC...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR TCA 72 bp GATAAGCGTGGTGACCCGTTCACCTGTATGAAGCAGTaGCAGACCCTGGGGTTGTCCCTTGTACACGAACAA +
Preference number: 3 (lower is better)
Translates to: DKRGDPFTCMKQ*QTLGLSLVHEQ
Trigger: TTGTTCGTGTACAAGGGACAACCCCAGGGTCTGTCACTGCTTCATACAGGTGAACGGGTCACCACGCTTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 72 bp CCACGTGCTAGCAGTGCAGTGATGCACTGCCGTGTCTaGTTCCACTCTGATCTTTCAAATGCAAGGATGGAC +
Preference number: 3 (lower is better)
Translates to: PRASSAVMHCRV*FHSDLSNARMD
Trigger: GTCCATCCTTGCATTTGAAAGATCAGAGTGGAAGCAGACACGGCAGTGCATCACTGCACTGCTAGCACGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 72 bp TCCACTCTGATCTTTCAAATGCAAGGATGGACCACATaGCTGAGACCCAGGACTCTACCAAAGCCCCCATGC +
Preference number: 3 (lower is better)
Translates to: STLIFQMQGWTT*LRPRTLPKPPC
Trigger: GCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCATCCTTGCATTTGAAAGATCAGAGTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 72 bp CAAGTGGTTCCAGGAACACAGCTCAGATGGCTAGTTTaGAGGGTACTGGAGGCCTGTGAGAATAGATGGCCT +
Preference number: 3 (lower is better)
Translates to: QVVPGTQLRWLV*RVLEACENRWP
Trigger: AGGCCATCTATTCTCACAGGCCTCCAGTACCCTCCAAACTAGCCATCTGAGCTGTGTTCCTGGAACCACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCGCTCAGATGGCTAGTTaGGAGGGTACTGGAGGCCTG +
Preference number: 3 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSAQMAS*EGTGGL
Trigger: CAGGCCTCCAGTACCCTCCAAACTAGCCATCTGAGC...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGTGTGTGCAGCTGTGGTaGAGTATCAGCAAATTGACA +
Preference number: 3 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKCVQLW*SISKLT
Trigger: TGTCAATTTGCTGATACTCAACCACAGCTGCACACA...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAAACCCTAAGGCATTTCTaGATACAAGAGATGCCTGGG +
Preference number: 3 (lower is better)
Translates to: QVLPQLCPQERGFCFSLETLRHF*IQEMPG
Trigger: CCCAGGCATCTCTTGTATCAAGAAATGCCTTAGGGT...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGGGTGTTTGTTGTTTGTaGTGTTACAGAGTCTCACTG +
Preference number: 3 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKGVCCL*CYRVSL
Trigger: CAGTGAGACTCTGTAACACAACAAACAACAAACACC...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGATGGCTATCAGCAAATaGACAGTGCAACAGTTTGTG +
Preference number: 3 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKMAISK*TVQQFV
Trigger: CACAAACTGTTGCACTGTCAATTTGCTGATAGCCAT...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR TCA 72 bp TGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATaGGACAAGCTGTTTAGAAACAGGCAGGGTCTCTGC +
Preference number: 3 (lower is better)
Translates to: CPQERGFCFSLE*DKLFRNRQGLC
Trigger: GCAGAGACCCTGCCTGTTTCTAAACAGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 72 bp TTCAGTTACAGCAAGGCGTTGAGCTTGGGTCTAAGATaGAGACAAATGAGACCACTGGCCAGGGAAAGCTCC +
Preference number: 3 (lower is better)
Translates to: FSYSKALSLGLR*RQMRPLARESS
Trigger: GGAGCTTTCCCTGGCCAGTGGTCTCATTTGTCTCCATCTTAGACCCAAGCTCAACGCCTTGCTGTAACTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 72 bp AGTACAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTaGCTTCTGTTTTTCTCTGGAATGAGACAAGCTGTT +
Preference number: 3 (lower is better)
Translates to: STSAAPTVPTGA*LLFFSGMRQAV
Trigger: AACAGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTGTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAACTGGGTGTTTGTTGTTaGTTGTGTTACAGAGTCTCA +
Preference number: 3 (lower is better)
Translates to: QVLPQLCPQERGFCFSLELGVCC*LCYRVS
Trigger: TGAGACTCTGTAACACAACAAACAACAAACACCCAG...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAAGCAAGGCGTTGAGCTaGGGTCTAAGATGGAGACAA +
Preference number: 3 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVSKALS*GLRWRQ
Trigger: TTGTCTCCATCTTAGACCCAAGCTCAACGCCTTGCT...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR TCA 72 bp AGTAAAGCAAGTCACACAGTGACCAAGAGACGCACCTaGTCAGAACGCTCAGCTCTGATGACTGTTTGGCGT +
Preference number: 3 (lower is better)
Translates to: SKASHTVTKRRT*SERSALMTVWR
Trigger: ACGCCAAACAGTCATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCTTTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 72 bp AAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATaGAGAGAGAGTAAAGCAAGTCACACAGTGACCAAG +
Preference number: 3 (lower is better)
Translates to: KTQVCIPRSSSP*RESKASHTVTK
Trigger: CTTGGTCACTGTGTGACTTGCTTTACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTCTGGGTGTTTGTTGTTaGTTGTGTTACAGAGTCTCA +
Preference number: 3 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQALGVCC*LCYRVS
Trigger: TGAGACTCTGTAACACAACAAACAACAAACACCCAG...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACCCTCTGGGTGTTTGTaGTTTGTTGTGTTACAGAGT +
Preference number: 3 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVPSGCL*FVVLQS
Trigger: ACTCTGTAACACAACAAACAACAAACACCCAGAGGG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCATGGCTATCAGCAAATaGACAGTGCAACAGTTTGTG +
Preference number: 3 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCMAISK*TVQQFV
Trigger: CACAAACTGTTGCACTGTCAATTTGCTGATAGCCAT...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCTTGAGTATCAGCAAATaGACAGTGCAACAGTTTGTG +
Preference number: 3 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCLSISK*TVQQFV
Trigger: CACAAACTGTTGCACTGTCAATTTGCTGATACTCAA...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACAGCAAGGCGTTGAGCTaGGGTCTAAGATGGAGACAA +
Preference number: 3 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYSKALS*GLRWRQ
Trigger: TTGTCTCCATCTTAGACCCAAGCTCAACGCCTTGCT...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCGGTGTTTGTTGTTTGTaGTGTTACAGAGTCTCACTG +
Preference number: 3 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSGVCCL*CYRVSL
Trigger: CAGTGAGACTCTGTAACACAACAAACAACAAACACC...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR-3UTR CAA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTATTGAGTATCAGCAAATaGACAGTGCAACAGTTTGTG +
Preference number: 3 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVLSISK*TVQQFV
Trigger: CACAAACTGTTGCACTGTCAATTTGCTGATACTCAA...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 72 bp AAGTCACCACCATCTACACCTTGTACATCTGAGACCTaGATTTGGGTTTCAAAACCCTCTGGGTGTTTGTTG +
Preference number: 3 (lower is better)
Translates to: KSPPSTPCTSET*IWVSKPSGCLL
Trigger: CAACAAACACCCAGAGGGTTTTGAAACCCAAATCCAGGTCTCAGATGTACAAGGTGTAGATGGTGGTGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CCA 72 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGCTGTaGTTGAGTATCAGCAAATTGACAGTGCAACAGTTT +
Preference number: 3 (lower is better)
Translates to: CVCVCVCVCVQL*LSISKLTVQQF
Trigger: AAACTGTTGCACTGTCAATTTGCTGATACTCAACCACAGCTGCACACACACACACACACACACACACACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 72 bp TCAAGCCTACAGTGGCACTACACAGCCTCTCATGAATaGCTTTTAAAACTCATAGGAAAGTCACCACCATCT +
Preference number: 3 (lower is better)
Translates to: SSLQWHYTASHE*LLKLIGKSPPS
Trigger: AGATGGTGGTGACTTTCCTATGAGTTTTAAAAGGCATTCATGAGAGGCTGTGTAGTGCCACTGTAGGCTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR GCA 72 bp CAGAGATTTATTCTCGAATCCGGATGTTTTCAATCTTaGAGTTCACATGTCTCAAGAATTCAGCGACATACA +
Preference number: 3 (lower is better)
Translates to: QRFILESGCFQS*SSHVSRIQRHT
Trigger: TGTATGTCGCTGAATTCTTGAGACATGTGAACTGCAAGATTGAAAACATCCGGATTCGAGAATAAATCTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCGAGCAGCGGCTGGGATaGACCAGGGTCCGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGEQRLG*TRVRRA
Trigger: GGCCCTCCGGACCCTGGTGCATCCCAGCCGCTGCTC...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGGCAGCAGCAGCCAGGTaGGCAGCGGCTGGGATGCAC +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKAAAAR*AAAGMH
Trigger: GTGCATCCCAGCCGCTGCTCACCTGGCTGCTGCTGC...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCGGTGAAGTGCAGCTGTaGGACCAGCCGCGGGGCTTT +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGGEVQL*DQPRGF
Trigger: AAAGCCCCGCGGCTGGTCTCACAGCTGCACTTCACC...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCCGCTGCAGTGCACGGTaGTGGGGTGGTTGCCCGTCT +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPRCSAR*WGGCPS
Trigger: AGACGGGCAACCACCCCATCACCGTGCACTGCAGCG...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCGGCCAGCTGGTGAAGTaGAGCTGTGAGACCAGCCGC +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGGQLVK*SCETSR
Trigger: GCGGCTGGTCTCACAGCTGCACTTCACCAGCTGGCC...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCGCTCCCGCGCTGCAGTaGACGGTGATGGGGTGGTTG +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPAPALQ*TVMGWL
Trigger: CAACCACCCCATCACCGTGCACTGCAGCGCGGGAGC...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAGCTCCCGCGCTGCAGTaGACGGTGATGGGGTGGTTG +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAAPALQ*TVMGWL
Trigger: CAACCACCCCATCACCGTGCACTGCAGCGCGGGAGC...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCTGTACCTGTCCGCCCTaGTCCCGCGCTGCAGTGCAC +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPCTCPP*SRAAVH
Trigger: GTGCACTGCAGCGCGGGAGCAGGGCGGACAGGTACA...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAGGTGAAGTGCAGCTGTaGGACCAGCCGCGGGGCTTT +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAGEVQL*DQPRGF
Trigger: AAAGCCCCGCGGCTGGTCTCACAGCTGCACTTCACC...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAACGCCCGCGCTACAGTaGACCACAATGGGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSATPALQ*TTMGPA
Trigger: TGCTGGGCCCATTGTGGTTCACTGTAGCGCGGGCGT...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGCGCTGCAGTGCACGGTaGTGGGGTGGTTGCCCGTCT +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKRCSAR*WGGCPS
Trigger: AGACGGGCAACCACCCCATCACCGTGCACTGCAGCG...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCGTGCTATGGAGCGTCTaGAGGTGCCTCTCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGVLWSV*RCLSRE
Trigger: CTCCCTGGAGAGGCACCTGCAGACGCTCCATAGCAC...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCTCCTGTTCCCGCTCCTaGACCTCCGTCAGCATGACG +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGSCSRS*TSVSMT
Trigger: CGTCATGCTGACGGAGGTGCAGGAGCGGGAACAGGA...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCAGTCAGGCCAGCTGGTaGAGTGCAGCTGTGAGACCA +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGSQASW*SAAVRP
Trigger: TGGTCTCACAGCTGCACTTCACCAGCTGGCCTGACT...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCAGGGTCCGGAGGGCCTaGAGTTGTGCTGGTCCAGTT +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPRVRRA*SCAGPV
Trigger: AACTGGACCAGCACAACTGCAGGCCCTCCGGACCCT...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCGTGCTATGGAGCGTCTaGAGGTGCCTCTCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPVLWSV*RCLSRE
Trigger: CTCCCTGGAGAGGCACCTGCAGACGCTCCATAGCAC...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCGGGTGGTTGCCCGTCTaGTGCTGCTGCTTCTGCACT +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPGWLPV*CCCFCT
Trigger: AGTGCAGAAGCAGCAGCAGCAGACGGGCAACCACCC...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTGCTCCCGCGCTGCAGTaGACGGTGATGGGGTGGTTG +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVAPALQ*TVMGWL
Trigger: CAACCACCCCATCACCGTGCACTGCAGCGCGGGAGC...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGTGCACGGTGATGGGGTaGTTGCCCGTCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKCTVMG*LPVCCC
Trigger: GCAGCAGCAGACGGGCAACCACCCCATCACCGTGCA...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATGCAGCAGCAGCCAGGTaGGCAGCGGCTGGGATGCAC +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDAAAAR*AAAGMH
Trigger: GTGCATCCCAGCCGCTGCTCACCTGGCTGCTGCTGC...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCAATGGGCCCAGCATGTaGGGGGTTGAGTGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGNGPSM*GVECLH
Trigger: GTGAAGACACTCAACCCCTCACATGCTGGGCCCATT...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCTGGCATCGATCACAATaGAGGTGCCAGTCCGACCCA +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGWHRSQ*RCQSDP
Trigger: TGGGTCGGACTGGCACCTTCATTGTGATCGATGCCA...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCGCACCTCCGTCAGCATaGCGATTGTGTGAGACTTCC +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGAPPSA*RLCETS
Trigger: GGAAGTCTCACACAATCGTCATGCTGACGGAGGTGC...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCATTGCCCGTCTGCTGCTaGTGCTTCTGCACTGCTGCA +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSALPVCC*CFCTAA
Trigger: TGCAGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAA...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGTGGGTGGCTGTGCTATaGAGCGTCTGCAGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKWVAVL*SVCRCL
Trigger: GAGGCACCTGCAGACGCTCCATAGCACAGCCACCCA...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCGAACTTCTTGGGGCCTaGTGGAGATCTGCTCAGCAG +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPELLGA*WRSAQQ
Trigger: CTGCTGAGCAGATCTCCATCAGGCCCCAAGAAGTTC...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGAGTCAGGCCAGCTGGTaGAGTGCAGCTGTGAGACCA +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKSQASW*SAAVRP
Trigger: TGGTCTCACAGCTGCACTTCACCAGCTGGCCTGACT...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCCCTGAAGAAGTAGGCTaGAAGCAGGAACAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGPEEVG*KQEQEE
Trigger: CTCCTCCTGTTCCTGCTTGCAGCCTACTTCTTCAGG...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAAGTGCTATGGAGCGTCTaGAGGTGCCTCTCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEVLWSV*RCLSRE
Trigger: CTCCCTGGAGAGGCACCTGCAGACGCTCCATAGCAC...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCTGTTGGCAGGCAGGTTaGCCGTCCTCATGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPCWQAG*PSSCSP
Trigger: AGGAGAACATGAGGACGGGCAACCTGCCTGCCAACA...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATCCTGTTCCCGCTCCTaGACCTCCGTCAGCATGACG +
Preference number: 4 (lower is better)
Translates to: QVLPQLCPQERGFCFSLESCSRS*TSVSMT
Trigger: CGTCATGCTGACGGAGGTGCAGGAGCGGGAACAGGA...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCTGCTGCTGCTGCTTCTaGACTGCTGCAATCAGGTCA +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGCCCCF*TAAIRS
Trigger: TGACCTGATTGCAGCAGTGCAGAAGCAGCAGCAGCA...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGTTGCCCGTCTGCTGCTaGTGCTTCTGCACTGCTGCA +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKLPVCC*CFCTAA
Trigger: TGCAGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAA...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATTGTACCTGTCCGCCCTaGTCCCGCGCTGCAGTGCAC +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDCTCPP*SRAAVH
Trigger: GTGCACTGCAGCGCGGGAGCAGGGCGGACAGGTACA...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCTACAGTGAACCACAATaGGCCCAGCATGTGAGGGGT +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGYSEPQ*AQHVRG
Trigger: ACCCCTCACATGCTGGGCCCATTGTGGTTCACTGTA...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTTGGGTGGCTGTGCTATaGAGCGTCTGCAGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVWVAVL*SVCRCL
Trigger: GAGGCACCTGCAGACGCTCCATAGCACAGCCACCCA...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTCGGACCTGCTCTTCCTaGCGGGCCAGGGGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQARTCSS*RARGCL
Trigger: CAAACAGCCCCTGGCCCGCCAGGAAGAGCAGGTCCG...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATCGGACCTGCTCTTCCTaGCGGGCCAGGGGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDRTCSS*RARGCL
Trigger: CAAACAGCCCCTGGCCCGCCAGGAAGAGCAGGTCCG...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCGGCCAGCCATGGAAATaGAATTGTCTCACCATGCGG +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGGQPWK*NCLTMR
Trigger: CCGCATGGTGAGACAATTCCATTTCCATGGCTGGCC...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 72 bp GACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTaGCCACATTCCGATGCCCTGGGTGCGACAGTTGGT +
Preference number: 4 (lower is better)
Translates to: DPGLYQSPHAHC*PHSDALGATVG
Trigger: ACCAACTGTCGCACCCAGGGCATCGGAATGTGGCAAACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATCTTGTCGTTGCTGCTaGCCACGGCCTTCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: QVLPQLCPQERGFCFSLESCRCC*PRPSSA
Trigger: AGCAGAGGAAGGCCGTGGTCAGCAGCAACGACAAGA...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGAATGGGCCCAGCATGTaGGGGGTTGAGTGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKNGPSM*GVECLH
Trigger: GTGAAGACACTCAACCCCTCACATGCTGGGCCCATT...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCACGCCCGCGCTACAGTaGACCACAATGGGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCTPALQ*TTMGPA
Trigger: TGCTGGGCCCATTGTGGTTCACTGTAGCGCGGGCGT...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTCGTTGGTCAGCTTCCTaGACTCTTCCTCCAGCCCGA +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVRWSAS*TLPPAR
Trigger: TCGGGCTGGAGGAAGAGTTCAGGAAGCTGACCAACG...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCAGCATGACGATTGTGTaGGACTTCCACTCCCATACC +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGSMTIV*DFHSHT
Trigger: GGTATGGGAGTGGAAGTCTCACACAATCGTCATGCT...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCACGCTGCAGTGCACGGTaGTGGGGTGGTTGCCCGTCT +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSRCSAR*WGGCPS
Trigger: AGACGGGCAACCACCCCATCACCGTGCACTGCAGCG...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTGAGGGCCTGCAGTTGTaGTGGTCCAGTTGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVEGLQL*WSSCSL
Trigger: CAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTC...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCACCTGAAGAAGTAGGCTaGAAGCAGGAACAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAPEEVG*KQEQEE
Trigger: CTCCTCCTGTTCCTGCTTGCAGCCTACTTCTTCAGG...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGACCACGGCCTTCCTCTaGTTCCGGAACCTGAAGAAG +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKTTAFL*FRNLKK
Trigger: CTTCTTCAGGTTCCGGAAGCAGAGGAAGGCCGTGGT...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCCAGCTGTCTGGGAGTTaGGGATGGATGCAGAACTTT +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGQLSGS*GWMQNF
Trigger: AAAGTTCTGCATCCATCCGCAACTCCCAGACAGCTG...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTGGCCAGCTGGTGAAGTaGAGCTGTGAGACCAGCCGC +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAGQLVK*SCETSR
Trigger: GCGGCTGGTCTCACAGCTGCACTTCACCAGCTGGCC...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATGGCCAGCTGGTGAAGTaGAGCTGTGAGACCAGCCGC +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDGQLVK*SCETSR
Trigger: GCGGCTGGTCTCACAGCTGCACTTCACCAGCTGGCC...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCGGTCAATCATGCCTTTaGCTTCAGCGGGGATGCCAA +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPGQSCL*LQRGCQ
Trigger: TTGGCATCCCCGCTGAAGGCAAAGGCATGATTGACC...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATTGCCCGTCTGCTGCTaGTGCTTCTGCACTGCTGCA +
Preference number: 4 (lower is better)
Translates to: QVLPQLCPQERGFCFSLELPVCC*CFCTAA
Trigger: TGCAGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAA...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCATGTACCTGTCCGCCCTaGTCCCGCGCTGCAGTGCAC +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSCTCPP*SRAAVH
Trigger: GTGCACTGCAGCGCGGGAGCAGGGCGGACAGGTACA...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCTACAGTGAACCACAATaGGCCCAGCATGTGAGGGGT +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPYSEPQ*AQHVRG
Trigger: ACCCCTCACATGCTGGGCCCATTGTGGTTCACTGTA...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCACGGACCTGCTCTTCCTaGCGGGCCAGGGGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSRTCSS*RARGCL
Trigger: CAAACAGCCCCTGGCCCGCCAGGAAGAGCAGGTCCG...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATTGCACGGTGATGGGGTaGTTGCCCGTCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDCTVMG*LPVCCC
Trigger: GCAGCAGCAGACGGGCAACCACCCCATCACCGTGCA...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAAGAACTTCTTGGGGCCTaGTGGAGATCTGCTCAGCAG +
Preference number: 4 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEELLGA*WRSAQQ
Trigger: CTGCTGAGCAGATCTCCATCAGGCCCCAAGAAGTTC...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCCAGATGGCAATGAATTaGACTCCTCTCGGAATCGCT +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGQMAMN*TPLGIA
Trigger: AGCGATTCCGAGAGGAGTTCAATTCATTGCCATCTG...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAACGCCCGCGCTACAGTaGACCACAATGGGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVTPALQ*TTMGPA
Trigger: TGCTGGGCCCATTGTGGTTCACTGTAGCGCGGGCGT...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCATAGTTATATCTCCATaGGTCACCGAGCCCTCCGTT +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGIVISP*VTEPSV
Trigger: AACGGAGGGCTCGGTGACTCATGGAGATATAACTAT...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACGAGCAGCGGCTGGGATaGACCAGGGTCCGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYEQRLG*TRVRRA
Trigger: GGCCCTCCGGACCCTGGTGCATCCCAGCCGCTGCTC...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCACAGCTGTCTGGGAGTTaGGGATGGATGCAGAACTTT +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAQLSGS*GWMQNF
Trigger: AAAGTTCTGCATCCATCCGCAACTCCCAGACAGCTG...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAAGGAATTGTCTCACCATaGGGACCTGCTCTTCCTGGC +
Preference number: 4 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEGIVSP*GPALPG
Trigger: GCCAGGAAGAGCAGGTCCGCATGGTGAGACAATTCC...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGGGTCAATCATGCCTTTaGCTTCAGCGGGGATGCCAA +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKGQSCL*LQRGCQ
Trigger: TTGGCATCCCCGCTGAAGGCAAAGGCATGATTGACC...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGTGCTGCTGCTGCTTCTaGACTGCTGCAATCAGGTCA +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKCCCCF*TAAIRS
Trigger: TGACCTGATTGCAGCAGTGCAGAAGCAGCAGCAGCA...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCGGGTGGTTGCCCGTCTaGTGCTGCTGCTTCTGCACT +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCGWLPV*CCCFCT
Trigger: AGTGCAGAAGCAGCAGCAGCAGACGGGCAACCACCC...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTTGGGTGGCTGTGCTATaGAGCGTCTGCAGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAWVAVL*SVCRCL
Trigger: GAGGCACCTGCAGACGCTCCATAGCACAGCCACCCA...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCATGCACGGTGATGGGGTaGTTGCCCGTCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSCTVMG*LPVCCC
Trigger: GCAGCAGCAGACGGGCAACCACCCCATCACCGTGCA...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTTCTTGTCGTTGCTGCTaGCCACGGCCTTCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQASCRCC*PRPSSA
Trigger: AGCAGAGGAAGGCCGTGGTCAGCAGCAACGACAAGA...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATTCTTGTCGTTGCTGCTaGCCACGGCCTTCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDSCRCC*PRPSSA
Trigger: AGCAGAGGAAGGCCGTGGTCAGCAGCAACGACAAGA...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCATCCTGCTTAGGGCCTTaGGCTGCTATGAATTTGTTC +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSASCLGP*AAMNLF
Trigger: GAACAAATTCATAGCAGCTCAAGGCCCTAAGCAGGA...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCGGTGAAGTGCAGCTGTaGGACCAGCCGCGGGGCTTT +
Preference number: 4 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSGEVQL*DQPRGF
Trigger: AAAGCCCCGCGGCTGGTCTCACAGCTGCACTTCACC...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATCGTTGGTCAGCTTCCTaGACTCTTCCTCCAGCCCGA +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDRWSAS*TLPPAR
Trigger: TCGGGCTGGAGGAAGAGTTCAGGAAGCTGACCAACG...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCGTTGGTCAGCTTCCTaGACTCTTCCTCCAGCCCGA +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCRWSAS*TLPPAR
Trigger: TCGGGCTGGAGGAAGAGTTCAGGAAGCTGACCAACG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCAAGTCCTCAACTGTGTaGGCCAGAGGCCCCTGTGTG +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCKSSTV*ARGPCV
Trigger: CACACAGGGGCCTCTGGCTCACACAGTTGAGGACTT...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTAAGTCCTCAACTGTGTaGGCCAGAGGCCCCTGTGTG +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAKSSTV*ARGPCV
Trigger: CACACAGGGGCCTCTGGCTCACACAGTTGAGGACTT...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGAGCATGACGATTGTGTaGGACTTCCACTCCCATACC +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKSMTIV*DFHSHT
Trigger: GGTATGGGAGTGGAAGTCTCACACAATCGTCATGCT...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCATAGTTATATCTCCATaGGTCACCGAGCCCTCCGTT +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPIVISP*VTEPSV
Trigger: AACGGAGGGCTCGGTGACTCATGGAGATATAACTAT...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCACGACAAGCTAAAACTTaGCAGCAGGAGTGGACAGAA +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSARQAKT*QQEWTE
Trigger: TTCTGTCCACTCCTGCTGGCAAGTTTTAGCTTGTCG...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCCGACAAGCTAAAACTTaGCAGCAGGAGTGGACAGAA +
Preference number: 4 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPRQAKT*QQEWTE
Trigger: TTCTGTCCACTCCTGCTGGCAAGTTTTAGCTTGTCG...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTGGCCTGATGGAGATCTaGTCAGCAGCATCACTCTCT +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVGLMEI*SAASLS
Trigger: AGAGAGTGATGCTGCTGAGCAGATCTCCATCAGGCC...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCACACACCCGGATGTTaGCGTAGGTCCAACAGCCCT +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCHTPGC*RRSNSP
Trigger: AGGGCTGTTGGACCTACGGCAACATCCGGGTGTGTG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTGGTCAATCATGCCTTTaGCTTCAGCGGGGATGCCAA +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVGQSCL*LQRGCQ
Trigger: TTGGCATCCCCGCTGAAGGCAAAGGCATGATTGACC...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGCTGCTTCTGCACTGCTaGAATCAGGTCAATCATGCC +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKLLLHC*NQVNHA
Trigger: GGCATGATTGACCTGATTGCAGCAGTGCAGAAGCAG...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTTGGTTGCCCGTCTGCTaGTGCTGCTTCTGCACTGCT +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAWLPVC*CCFCTA
Trigger: AGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAACCA...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTTGGGGAAGAACTTCTTaGGGCCTGATGGAGATCTGC +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVWGRTS*GLMEIC
Trigger: GCAGATCTCCATCAGGCCCCAAGAAGTTCTTCCCCA...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTCACCGAGCCCTCCGTTaGCCAATACTGGTAGCATTT +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVHRALR*PILVAF
Trigger: AAATGCTACCAGTATTGGCCAACGGAGGGCTCGGTG...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGCAGCATGTGAGGGGTTaGGTGTCTTCACTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKQHVRG*VSSLSS
Trigger: TGAAGAAAGTGAAGACACTCAACCCCTCACATGCTG...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCTGGCATCGATCACAATaGAGGTGCCAGTCCGACCCA +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCWHRSQ*RCQSDP
Trigger: TGGGTCGGACTGGCACCTTCATTGTGATCGATGCCA...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCGTAAGGCTTGGTAGATaGATGTATACTGAACATCCG +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGVRLGR*MYTEHP
Trigger: CGGATGTTCAGTATACATTCATCTACCAAGCCTTAC...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTGCACCTCCGTCAGCATaGCGATTGTGTGAGACTTCC +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAAPPSA*RLCETS
Trigger: GGAAGTCTCACACAATCGTCATGCTGACGGAGGTGC...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATACCACGGCCTTCCTCTaGTTCCGGAACCTGAAGAAG +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDTTAFL*FRNLKK
Trigger: CTTCTTCAGGTTCCGGAAGCAGAGGAAGGCCGTGGT...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTTGTTGGCAGGCAGGTTaGCCGTCCTCATGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQACWQAG*PSSCSP
Trigger: AGGAGAACATGAGGACGGGCAACCTGCCTGCCAACA...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATGGAATTGTCTCACCATaGGGACCTGCTCTTCCTGGC +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDGIVSP*GPALPG
Trigger: GCCAGGAAGAGCAGGTCCGCATGGTGAGACAATTCC...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTCTGCTTCTGCACTGCTaGAATCAGGTCAATCATGCC +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVLLLHC*NQVNHA
Trigger: GGCATGATTGACCTGATTGCAGCAGTGCAGAAGCAG...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTATGGTTGCCCGTCTGCTaGTGCTGCTTCTGCACTGCT +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVWLPVC*CCFCTA
Trigger: AGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAACCA...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTCAGATGGCAATGAATTaGACTCCTCTCGGAATCGCT +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVQMAMN*TPLGIA
Trigger: AGCGATTCCGAGAGGAGTTCAATTCATTGCCATCTG...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAGTAAGGCTTGGTAGATaGATGTATACTGAACATCCG +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAVRLGR*MYTEHP
Trigger: CGGATGTTCAGTATACATTCATCTACCAAGCCTTAC...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCAGCACCTCCGTCAGCATaGCGATTGTGTGAGACTTCC +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSAPPSA*RLCETS
Trigger: GGAAGTCTCACACAATCGTCATGCTGACGGAGGTGC...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAGGCTCAAAATCACTCTaGAATGATCATTGGGCAGAA +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAGSKSL*NDHWAE
Trigger: TTCTGCCCAATGATCATTGCAGAGTGATTTTGAGCC...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCATGGTGGCTGACCTTTaGTCCCAGACCATTCTCCAG +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCMVADL*SQTILQ
Trigger: CTGGAGAATGGTCTGGGAGCAAAGGTCAGCCACCAT...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCATGTTGGCAGGCAGGTTaGCCGTCCTCATGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSCWQAG*PSSCSP
Trigger: AGGAGAACATGAGGACGGGCAACCTGCCTGCCAACA...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCGCCATCTATGAAGGATaGGTTGATATAGTCTGTGAA +
Preference number: 4 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGAIYEG*VDIVCE
Trigger: TTCACAGACTATATCAACGCATCCTTCATAGATGGC...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACCAACAGCCCTGGTCTaGCCAGTACTGGTAGCACTT +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVPTALV*PVLVAL
Trigger: AAGTGCTACCAGTACTGGCCAGACCAGGGCTGTTGG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCACCAACAGCCCTGGTCTaGCCAGTACTGGTAGCACTT +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSPTALV*PVLVAL
Trigger: AAGTGCTACCAGTACTGGCCAGACCAGGGCTGTTGG...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTTACAGTGAACCACAATaGGCCCAGCATGTGAGGGGT +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAYSEPQ*AQHVRG
Trigger: ACCCCTCACATGCTGGGCCCATTGTGGTTCACTGTA...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATGGCCAGCCATGGAAATaGAATTGTCTCACCATGCGG +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDGQPWK*NCLTMR
Trigger: CCGCATGGTGAGACAATTCCATTTCCATGGCTGGCC...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCGAACTTCTTGGGGCCTaGTGGAGATCTGCTCAGCAG +
Preference number: 4 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSELLGA*WRSAQQ
Trigger: CTGCTGAGCAGATCTCCATCAGGCCCCAAGAAGTTC...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAAAAATCACTCTGCAATaGTCATTGGGCAGAATGTTG +
Preference number: 4 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAKITLQ*SLGRML
Trigger: CAACATTCTGCCCAATGATCATTGCAGAGTGATTTT...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCAATGGGCCCAGCATGTaGGGGGTTGAGTGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSNGPSM*GVECLH
Trigger: GTGAAGACACTCAACCCCTCACATGCTGGGCCCATT...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTAGCATCACTCTCTGCTaGTCTTGCTCTTCTAAGATC +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVSITLC*SCSSKI
Trigger: GATCTTAGAAGAGCAAGAGCAGCAGAGAGTGATGCT...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAGGCCTGATGGAGATCTaGTCAGCAGCATCACTCTCT +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVGLMEI*SAASLS
Trigger: AGAGAGTGATGCTGCTGAGCAGATCTCCATCAGGCC...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCAGGCCTGATGGAGATCTaGTCAGCAGCATCACTCTCT +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSGLMEI*SAASLS
Trigger: AGAGAGTGATGCTGCTGAGCAGATCTCCATCAGGCC...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAATGGTGGCTGACCTTTaGTCCCAGACCATTCTCCAG +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVMVADL*SQTILQ
Trigger: CTGGAGAATGGTCTGGGAGCAAAGGTCAGCCACCAT...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCAGCTGTCTGGGAGTTaGGGATGGATGCAGAACTTT +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCQLSGS*GWMQNF
Trigger: AAAGTTCTGCATCCATCCGCAACTCCCAGACAGCTG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTCCTGTTCCCGCTCCTaGACCTCCGTCAGCATGACG +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYSCSRS*TSVSMT
Trigger: CGTCATGCTGACGGAGGTGCAGGAGCGGGAACAGGA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCAATCAGGTCAATCATaGCTTTGCCTTCAGCGGGGA +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCQSGQS*LCLQRG
Trigger: TCCCCGCTGAAGGCAAAGGCATGATTGACCTGATTG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTCAATCAGGTCAATCATaGCTTTGCCTTCAGCGGGGA +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAQSGQS*LCLQRG
Trigger: TCCCCGCTGAAGGCAAAGGCATGATTGACCTGATTG...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACGGGTGGTTGCCCGTCTaGTGCTGCTGCTTCTGCACT +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYGWLPV*CCCFCT
Trigger: AGTGCAGAAGCAGCAGCAGCAGACGGGCAACCACCC...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTCTCTGCAATGATCATTaGGCAGAATGTTGGGGTATC +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVLCNDH*AECWGI
Trigger: GATACCCCAACATTCTGCCCAATGATCATTGCAGAG...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCACACCGAGCCCTCCGTTaGCCAATACTGGTAGCATTT +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSHRALR*PILVAF
Trigger: AAATGCTACCAGTATTGGCCAACGGAGGGCTCGGTG...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAGGCCAGCCATGGAAATaGAATTGTCTCACCATGCGG +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVGQPWK*NCLTMR
Trigger: CCGCATGGTGAGACAATTCCATTTCCATGGCTGGCC...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCAGCATGTGAGGGGTTaGGTGTCTTCACTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCQHVRG*VSSLSS
Trigger: TGAAGAAAGTGAAGACACTCAACCCCTCACATGCTG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACAAGTCCTCAACTGTGTaGGCCAGAGGCCCCTGTGTG +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYKSSTV*ARGPCV
Trigger: CACACAGGGGCCTCTGGCTCACACAGTTGAGGACTT...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACGAGGGCCTGCAGTTGTaGTGGTCCAGTTGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYEGLQL*WSSCSL
Trigger: CAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTC...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACTGCTTCTGCACTGCTaGAATCAGGTCAATCATGCC +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVLLLHC*NQVNHA
Trigger: GGCATGATTGACCTGATTGCAGCAGTGCAGAAGCAG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCTGCTGCTGCTGCTTCTaGACTGCTGCAATCAGGTCA +
Preference number: 4 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSCCCCF*TAAIRS
Trigger: TGACCTGATTGCAGCAGTGCAGAAGCAGCAGCAGCA...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCACAGATGGCAATGAATTaGACTCCTCTCGGAATCGCT +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSQMAMN*TPLGIA
Trigger: AGCGATTCCGAGAGGAGTTCAATTCATTGCCATCTG...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAAAAAATCACTCTGCAATaGTCATTGGGCAGAATGTTG +
Preference number: 4 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEKITLQ*SLGRML
Trigger: CAACATTCTGCCCAATGATCATTGCAGAGTGATTTT...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCATCCTGCTTAGGGCCTTaGGCTGCTATGAATTTGTTC +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSSCLGP*AAMNLF
Trigger: GAACAAATTCATAGCAGCTCAAGGCCCTAAGCAGGA...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACAGCATGTGAGGGGTTaGGTGTCTTCACTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVQHVRG*VSSLSS
Trigger: TGAAGAAAGTGAAGACACTCAACCCCTCACATGCTG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAATAGTTATATCTCCATaGGTCACCGAGCCCTCCGTT +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVIVISP*VTEPSV
Trigger: AACGGAGGGCTCGGTGACTCATGGAGATATAACTAT...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTCTTAGGGCCTTGAGCTaGTATGAATTTGTTCTTTTC +
Preference number: 4 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVLRALS*YEFVLF
Trigger: GAAAAGAACAAATTCATAGCAGCTCAAGGCCCTAAG...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCCAATCAGGTCAATCATaGCTTTGCCTTCAGCGGGGA +
Preference number: 4 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSQSGQS*LCLQRG
Trigger: TCCCCGCTGAAGGCAAAGGCATGATTGACCTGATTG...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTCTCTGCAATGATCATTaGGCAGAATGTTGGGGTATC +
Preference number: 4 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQALCNDH*AECWGI
Trigger: GATACCCCAACATTCTGCCCAATGATCATTGCAGAG...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATGTAAGGCTTGGTAGATaGATGTATACTGAACATCCG +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDVRLGR*MYTEHP
Trigger: CGGATGTTCAGTATACATTCATCTACCAAGCCTTAC...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCAAGCATCACTCTCTGCTaGTCTTGCTCTTCTAAGATC +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSSITLC*SCSSKI
Trigger: GATCTTAGAAGAGCAAGAGCAGCAGAGAGTGATGCT...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACATGGTGGCTGACCTTTaGTCCCAGACCATTCTCCAG +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYMVADL*SQTILQ
Trigger: CTGGAGAATGGTCTGGGAGCAAAGGTCAGCCACCAT...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTGGGGAAGAACTTCTTaGGGCCTGATGGAGATCTGC +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYWGRTS*GLMEIC
Trigger: GCAGATCTCCATCAGGCCCCAAGAAGTTCTTCCCCA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACTCTGCAATGATCATTaGGCAGAATGTTGGGGTATC +
Preference number: 4 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVLCNDH*AECWGI
Trigger: GATACCCCAACATTCTGCCCAATGATCATTGCAGAG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACCACCGAGCCCTCCGTTaGCCAATACTGGTAGCATTT +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYHRALR*PILVAF
Trigger: AAATGCTACCAGTATTGGCCAACGGAGGGCTCGGTG...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATAAAATCACTCTGCAATaGTCATTGGGCAGAATGTTG +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDKITLQ*SLGRML
Trigger: CAACATTCTGCCCAATGATCATTGCAGAGTGATTTT...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACAGCATGACGATTGTGTaGGACTTCCACTCCCATACC +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYSMTIV*DFHSHT
Trigger: GGTATGGGAGTGGAAGTCTCACACAATCGTCATGCT...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCAGGCTCAAAATCACTCTaGAATGATCATTGGGCAGAA +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSGSKSL*NDHWAE
Trigger: TTCTGCCCAATGATCATTGCAGAGTGATTTTGAGCC...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATGCCATCTATGAAGGATaGGTTGATATAGTCTGTGAA +
Preference number: 4 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDAIYEG*VDIVCE
Trigger: TTCACAGACTATATCAACGCATCCTTCATAGATGGC...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 72 bp TGTGTGTGTGTGCAGCTGTGGTTGAGTATCAGCAAATaGACAGTGCAACAGTTTGTGGCCATTCTACCGTGT +
Preference number: 4 (lower is better)
Translates to: CVCVQLWLSISK*TVQQFVAILPC
Trigger: ACACGGTAGAATGGCCACAAACTGTTGCACTGTCAATTTGCTGATACTCAACCACAGCTGCACACACACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 72 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGCAGCTGTGGTaGAGTATCAGCAAATTGACAGTGCAACAGTTTGTG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVQLW*SISKLTVQQFV
Trigger: CACAAACTGTTGCACTGTCAATTTGCTGATACTCAACCACAGCTGCACACACACACACACACACACACACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR TCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTCCTGCTTAGGGCCTTaGGCTGCTATGAATTTGTTC +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYSCLGP*AAMNLF
Trigger: GAACAAATTCATAGCAGCTCAAGGCCCTAAGCAGGA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCACTTAGGGCCTTGAGCTaGTATGAATTTGTTCTTTTC +
Preference number: 4 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSLRALS*YEFVLF
Trigger: GAAAAGAACAAATTCATAGCAGCTCAAGGCCCTAAG...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 72 bp GAGACCTGGATTTGGGTTTCAAAACCCTCTGGGTGTTaGTTGTTTGTTGTGTTACAGAGTCTCACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: ETWIWVSKPSGC*LFVVLQSLTVA
Trigger: GGCTACAGTGAGACTCTGTAACACAACAAACAACAAACACCCAGAGGGTTTTGAAACCCAAATCCAGGTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
3UTR CAA 72 bp AAGAAGGTTGTCGGTGTCATAAACACCGGAGCTTCTTaGAAGGAAGAAGAAAAGGACATGCCAGGTACACAG +
Preference number: 4 (lower is better)
Translates to: KKVVGVINTGAS*KEEEKDMPGTQ
Trigger: CTGTGTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACACCGACAACCTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCCTTAGGGCCTTGAGCTaGTATGAATTTGTTCTTTTC +
Preference number: 4 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSLRALS*YEFVLF
Trigger: GAAAAGAACAAATTCATAGCAGCTCAAGGCCCTAAG...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR GCA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACGCCATCTATGAAGGATaGGTTGATATAGTCTGTGAA +
Preference number: 4 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYAIYEG*VDIVCE
Trigger: TTCACAGACTATATCAACGCATCCTTCATAGATGGC...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS CCA 90 bp GCAGCGGCTGGGATGCACCAGGGTCCGGAGGGCCTGCAGTTGTGCTaGTCCAGTTGCTCTCTGTTGGGGTGGTGTCGTTGCCCTGGCCAG +
Preference number: 5 (lower is better)
Translates to: AAAGMHQGPEGLQLC*SSCSLLGWCRCPGQ
Trigger: CTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCTGGTGCATCCCAGCCGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 90 bp CAGCCAGGTGAGCAGCGGCTGGGATGCACCAGGGTCCGGAGGGCCTaGAGTTGTGCTGGTCCAGTTGCTCTCTGTTGGGGTGGTGTCGTT +
Preference number: 5 (lower is better)
Translates to: QPGEQRLGCTRVRRA*SCAGPVALCWGGVV
Trigger: AACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCTGGTGCATCCCAGCCGCTGCTCACCTGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 90 bp AGGGTCCGGAGGGCCTGCAGTTGTGCTGGTCCAGTTGCTCTCTGTTaGGGTGGTGTCGTTGCCCTGGCCAGCTCTGGCGAGCGACAAGCT +
Preference number: 5 (lower is better)
Translates to: RVRRACSCAGPVALC*GGVVALASSGERQA
Trigger: AGCTTGTCGCTCGCCAGAGCTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS-3UTR CAA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCGTTGGGGTGGTGTCGTaGCCCTGGCCAGCTCTGGCG +
Preference number: 5 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGVGVVS*PWPALA
Trigger: CGCCAGAGCTGGCCAGGGCAACGACACCACCCCAAC...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCACCAGCCGCGGGGCTTaGCAGCTGTCTGGGAGTTGC +
Preference number: 5 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGTSRGA*QLSGSC
Trigger: GCAACTCCCAGACAGCTGCAAAGCCCCGCGGCTGGT...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS CCA 90 bp CTGGCCAGCTCTGGCGAGCGACAAGCTAAAACTTGCCAGCAGGAGTaGACAGAAGGGCTCCATGGTGCACCTCCCAGGGACCGGTGCTGT +
Preference number: 5 (lower is better)
Translates to: LASSGERQAKTCQQE*TEGLHGAPPRDRCC
Trigger: ACAGCACCGGTCCCTGGGAGGTGCACCATGGAGCCCTTCTGTCCACTCCTGCTGGCAAGTTTTAGCTTGTCGCTCGCCAGAGCTGGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209256.2
CDS-3UTR CAA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCCGGGCCTTCTTCATGTaGGCAGGCAGGTTGCCCGTC +
Preference number: 5 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGRAFFM*AGRLPV
Trigger: GACGGGCAACCTGCCTGCCAACATGAAGAAGGCCCG...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAACGGTGATGGGGTGGTaGCCCGTCTGCTGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: YPLRQCACHCHLNSEVSATVMGW*PVCCCC
Trigger: GCAGCAGCAGCAGACGGGCAACCACCCCATCACCGT...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCCCGGAGGGCCTGCAGTaGTGCTGGTCCAGTTGCTCT +
Preference number: 5 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPPEGLQ*CWSSCS
Trigger: AGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGG...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGACCAGCCGCGGGGCTTaGCAGCTGTCTGGGAGTTGC +
Preference number: 5 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKTSRGA*QLSGSC
Trigger: GCAACTCCCAGACAGCTGCAAAGCCCCGCGGCTGGT...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCATGTTGGCAGGCAGGTaGCCCGTCCTCATGTTCTCC +
Preference number: 5 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGMLAGR*PVLMFS
Trigger: GGAGAACATGAGGACGGGCAACCTGCCTGCCAACAT...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGCGGGCCTTCTTCATGTaGGCAGGCAGGTTGCCCGTC +
Preference number: 5 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKRAFFM*AGRLPV
Trigger: GACGGGCAACCTGCCTGCCAACATGAAGAAGGCCCG...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS GCA 90 bp TCCAGCCCGATCTTGTCAAAATGGGTGGCTGTGCTATGGAGCGTCTaGAGGTGCCTCTCCAGGGAGGACACATCCAGCTCTGTGTCCCCA +
Preference number: 5 (lower is better)
Translates to: SSPILSKWVAVLWSV*RCLSREDTSSSVSP
Trigger: TGGGGACACAGAGCTGGATGTGTCCTCCCTGGAGAGGCACCTGCAGACGCTCCATAGCACAGCCACCCATTTTGACAAGATCGGGCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 90 bp GTTGTGCTGGTCCAGTTGCTCTCTGTTGGGGTGGTGTCGTTGCCCTaGCCAGCTCTGGCGAGCGACAAGCTAAAACTTGCCAGCAGGAGT +
Preference number: 5 (lower is better)
Translates to: VVLVQLLSVGVVSLP*PALASDKLKLASRS
Trigger: ACTCCTGCTGGCAAGTTTTAGCTTGTCGCTCGCCAGAGCTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 90 bp GGATCTCCTCCTCCAGGTGCTCCACGGGGATGGGGAAGAACTTCTTaGGGCCTGATGGAGATCTGCTCAGCAGCATCACTCTCTGCTGCT +
Preference number: 5 (lower is better)
Translates to: GSPPPGAPRGWGRTS*GLMEICSAASLSAA
Trigger: AGCAGCAGAGAGTGATGCTGCTGAGCAGATCTCCATCAGGCCCCAAGAAGTTCTTCCCCATCCCCGTGGAGCACCTGGAGGAGGAGATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS-3UTR CAA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCATGTTGGCAGGCAGGTaGCCCGTCCTCATGTTCTCC +
Preference number: 5 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPMLAGR*PVLMFS
Trigger: GGAGAACATGAGGACGGGCAACCTGCCTGCCAACAT...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCTCACCGAGCCCTCCGTaGGCCAATACTGGTAGCATT +
Preference number: 5 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGSPSPP*ANTGSI
Trigger: AATGCTACCAGTATTGGCCAACGGAGGGCTCGGTGA...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp GAGCCAGGCACACAGGCAGGCAGCAAGTGGTTCCAGGAACACAGCTCAGATGGCAGGTCAATCATGCCTTaGCCTTCAGCGGGGATGCCA +
Preference number: 5 (lower is better)
Translates to: EPGTQAGSKWFQEHSSDGRSIMP*PSAGMP
Trigger: TGGCATCCCCGCTGAAGGCAAAGGCATGATTGACCT...GCCATCTGAGCTGTGTTCCTGGAACCACTTGCTGCCTGCCTGTGTGCCTGGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS CCA 90 bp CTGGCCAGCTCTGGCGAGCGACAAGCTAAAACTTGCCAGCAGGAGTaGACAGAAGGGCTCCATGGTGCACCAAGGGGAAATGAGGGCTAT +
Preference number: 5 (lower is better)
Translates to: LASSGERQAKTCQQE*TEGLHGAPRGNEGY
Trigger: ATAGCCCTCATTTCCCCTTGGTGCACCATGGAGCCCTTCTGTCCACTCCTGCTGGCAAGTTTTAGCTTGTCGCTCGCCAGAGCTGGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211788.2
CDS-3UTR CAA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAGTTGGGGTGGTGTCGTaGCCCTGGCCAGCTCTGGCG +
Preference number: 5 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVVGVVS*PWPALA
Trigger: CGCCAGAGCTGGCCAGGGCAACGACACCACCCCAAC...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATACCAGCCGCGGGGCTTaGCAGCTGTCTGGGAGTTGC +
Preference number: 5 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDTSRGA*QLSGSC
Trigger: GCAACTCCCAGACAGCTGCAAAGCCCCGCGGCTGGT...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TCTCACTGTAGCCCAAGCTGGCCTGGCCTGACCTGGACCAAATCCTTATGCCCCTCCTCCAGCCCGATCTaGTCAAAATGGGTGGCTGTG +
Preference number: 5 (lower is better)
Translates to: SHCSPSWPGLTWTKSLCPSSSPI*SKWVAV
Trigger: CACAGCCACCCATTTTGACAAGATCGGGCTGGAGGA...GGGGCATAAGGATTTGGTCCAGGTCAGGCCAGGCCAGCTTGGGCTACAGTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAAGGTCAATCATGCCTTaGCCTTCAGCGGGGATGCCA +
Preference number: 5 (lower is better)
Translates to: YPLRQCACHCHLNSEVSARSIMP*PSAGMP
Trigger: TGGCATCCCCGCTGAAGGCAAAGGCATGATTGACCT...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCACGGTGATGGGGTGGTaGCCCGTCTGCTGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCTVMGW*PVCCCC
Trigger: GCAGCAGCAGCAGACGGGCAACCACCCCATCACCGT...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS CCA 90 bp AACTCTTCCTCCAGCCCGATCTTGTCAAAATGGGTGGCTGTGCTATaGAGCGTCTGCAGGTGCCTCTCCAGGGAGGACACATCCAGCTCT +
Preference number: 5 (lower is better)
Translates to: NSSSSPILSKWVAVL*SVCRCLSREDTSSS
Trigger: AGAGCTGGATGTGTCCTCCCTGGAGAGGCACCTGCAGACGCTCCATAGCACAGCCACCCATTTTGACAAGATCGGGCTGGAGGAAGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 90 bp TTGGTCAGCTTCCTGAACTCTTCCTCCAGCCCGATCTTGTCAAAATaGGTGGCTGTGCTATGGAGCGTCTGCAGGTGCCTCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: LVSFLNSSSSPILSK*VAVLWSVCRCLSRE
Trigger: CTCCCTGGAGAGGCACCTGCAGACGCTCCATAGCACAGCCACCCATTTTGACAAGATCGGGCTGGAGGAAGAGTTCAGGAAGCTGACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS-3UTR CAA 90 bp GACCACTGGCCAGGGAAAGCTCCTCCATCTTCCATCTTCTGCCTGTGCTCCAAGGGCATTTTCTTGTCGTaGCTGCTGACCACGGCCTTC +
Preference number: 5 (lower is better)
Translates to: DHWPGKAPPSSIFCLCSKGIFLS*LLTTAF
Trigger: GAAGGCCGTGGTCAGCAGCAACGACAAGAAAATGCC...CTTGGAGCACAGGCAGAAGATGGAAGATGGAGGAGCTTTCCCTGGCCAGTGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp AGTAAATGTGCTCTGACTCGGAGTCCTCTACTGGTTTCTCCACAGGGGGTTTCAACGGTGATGGGGTGGTaGCCCGTCTGCTGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: SKCALTRSPLLVSPQGVSTVMGW*PVCCCC
Trigger: GCAGCAGCAGCAGACGGGCAACCACCCCATCACCGT...TGAAACCCCCTGTGGAGAAACCAGTAGAGGACTCCGAGTCAGAGCACATTTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS GCA 90 bp CCGTTAGGCATTTTCTTGTCGTTGCTGCTGACCACGGCCTTCCTCTaGTTCCGGAACCAGGTGAGCCGGGAAAAGTTCTTTCTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: PLGIFLSLLLTTAFL*FRNQVSREKFFLLL
Trigger: GAGCAGCAGAAAGAACTTTTCCCGGCTCACCTGGTTCCGGAAGCAGAGGAAGGCCGTGGTCAGCAGCAACGACAAGAAAATGCCTAACGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209979.2
CDS CCA 90 bp CAGCCATGGAAATGGAATTGTCTCACCATGCGGACCTGCTCTTCCTaGCGGGCCAGGGGCTGTTTGAAGGTAACCAGAAAGTCTCGTACG +
Preference number: 5 (lower is better)
Translates to: QPWKWNCLTMRTCSS*RARGCLKVTRKSRT
Trigger: CGTACGAGACTTTCTGGTTACCTTCAAACAGCCCCTGGCCCGCCAGGAAGAGCAGGTCCGCATGGTGAGACAATTCCATTTCCATGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS-3UTR CAA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCAACTTTCTTCAGGAACTaGAGCATCCCGATGGGGGTA +
Preference number: 5 (lower is better)
Translates to: YPLRQCACHCHLNSEVSATFFRN*SIPMGV
Trigger: TACCCCCATCGGGATGCTCAAGTTCCTGAAGAAAGT...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCACCAGCATGTGAGGGGTaGAGTGTCTTCACTTTCTTC +
Preference number: 5 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAPACEG*SVFTFF
Trigger: GAAGAAAGTGAAGACACTCAACCCCTCACATGCTGG...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATGTTGTGCTGGTCCAGTaGCTCTCTGTTGGGGTGGTG +
Preference number: 5 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDVVLVQ*LSVGVV
Trigger: CACCACCCCAACAGAGAGCAACTGGACCAGCACAAC...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TACCCTCTCAGGCAGTGCGCCTGTCACTGCCACCTGAACTCAGAGGTCTCAGCATTCATGATTCGCACGTaGGTCAGCTTCCTGAACTCT +
Preference number: 5 (lower is better)
Translates to: YPLRQCACHCHLNSEVSAFMIRT*VSFLNS
Trigger: AGAGTTCAGGAAGCTGACCAACGTGCGAATCATGAA...TGCTGAGACCTCTGAGTTCAGGTGGCAGTGACAGGCGCACTGCCTGAGAGGGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATATGTTGGCAGGCAGGTaGCCCGTCCTCATGTTCTCC +
Preference number: 5 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDMLAGR*PVLMFS
Trigger: GGAGAACATGAGGACGGGCAACCTGCCTGCCAACAT...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCCGGGCCTTCTTCATGTaGGCAGGCAGGTTGCCCGTC +
Preference number: 5 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSRAFFM*AGRLPV
Trigger: GACGGGCAACCTGCCTGCCAACATGAAGAAGGCCCG...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAAGCCATGGAAATGGAATaGTCTCACCATGCGGACCTG +
Preference number: 5 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEAMEME*SHHADL
Trigger: CAGGTCCGCATGGTGAGACAATTCCATTTCCATGGC...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCGGCATTTTCTTGTCGTaGCTGCTGACCACGGCCTTC +
Preference number: 5 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCGIFLS*LLTTAF
Trigger: GAAGGCCGTGGTCAGCAGCAACGACAAGAAAATGCC...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTGGCATTTTCTTGTCGTaGCTGCTGACCACGGCCTTC +
Preference number: 5 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQAGIFLS*LLTTAF
Trigger: GAAGGCCGTGGTCAGCAGCAACGACAAGAAAATGCC...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp ATGGACCACATGGCTGAGACCCAGGACTCTACCAAAGCCCCCATGCACACTGTTACTTTCTTCAGGAACTaGAGCATCCCGATGGGGGTA +
Preference number: 5 (lower is better)
Translates to: MDHMAETQDSTKAPMHTVTFFRN*SIPMGV
Trigger: TACCCCCATCGGGATGCTCAAGTTCCTGAAGAAAGT...AACAGTGTGCATGGGGGCTTTGGTAGAGTCCTGGGTCTCAGCCATGTGGTCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAATGAGACAAGCTTCCTCCAGCCCGATCTaGTCAAAATGGGTGGCTGTG +
Preference number: 5 (lower is better)
Translates to: PTVPTGAWLLFFSGMRQASSSPI*SKWVAV
Trigger: CACAGCCACCCATTTTGACAAGATCGGGCTGGAGGA...AGCTTGTCTCATTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTATCCTCCAGCCCGATCTaGTCAAAATGGGTGGCTGTG +
Preference number: 5 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVSSSPI*SKWVAV
Trigger: CACAGCCACCCATTTTGACAAGATCGGGCTGGAGGA...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATGCCATGGAAATGGAATaGTCTCACCATGCGGACCTG +
Preference number: 5 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDAMEME*SHHADL
Trigger: CAGGTCCGCATGGTGAGACAATTCCATTTCCATGGC...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CAAGTGCTGCCCCAACTGTGCCCACAGGAGCGTGGCTTCTGTTTTTCTCTGGAAATAGTCTGTGAACTCTaGCCCTCTTTTCATGGACAG +
Preference number: 5 (lower is better)
Translates to: QVLPQLCPQERGFCFSLEIVCEL*PSFHGQ
Trigger: CTGTCCATGAAAAGAGGGCAAGAGTTCACAGACTAT...TTCCAGAGAAAAACAGAAGCCACGCTCCTGTGGGCACAGTTGGGGCAGCACTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCTCACCGAGCCCTCCGTaGGCCAATACTGGTAGCATT +
Preference number: 5 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSSPSPP*ANTGSI
Trigger: AATGCTACCAGTATTGGCCAACGGAGGGCTCGGTGA...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTAGCCATGGAAATGGAATaGTCTCACCATGCGGACCTG +
Preference number: 5 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVAMEME*SHHADL
Trigger: CAGGTCCGCATGGTGAGACAATTCCATTTCCATGGC...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS GCA 90 bp TTCTTGGGGCCTGATGGAGATCTGCTCAGCAGCATCACTCTCTGCTaGTCTTGCTCTTCTAAGATCCCGTTAGGCATTTTCTTGTCGTTG +
Preference number: 5 (lower is better)
Translates to: FLGPDGDLLSSITLC*SCSSKIPLGIFLSL
Trigger: CAACGACAAGAAAATGCCTAACGGGATCTTAGAAGAGCAAGAGCAGCAGAGAGTGATGCTGCTGAGCAGATCTCCATCAGGCCCCAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 90 bp AACTTCTTGGGGCCTGATGGAGATCTGCTCAGCAGCATCACTCTCTaGTGCTCTTGCTCTTCTAAGATCCCGTTAGGCATTTTCTTGTCG +
Preference number: 5 (lower is better)
Translates to: NFLGPDGDLLSSITL*CSCSSKIPLGIFLS
Trigger: CGACAAGAAAATGCCTAACGGGATCTTAGAAGAGCAAGAGCAGCAGAGAGTGATGCTGCTGAGCAGATCTCCATCAGGCCCCAAGAAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS-3UTR CAA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACGTTGTGCTGGTCCAGTaGCTCTCTGTTGGGGTGGTG +
Preference number: 5 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYVVLVQ*LSVGVV
Trigger: CACCACCCCAACAGAGAGCAACTGGACCAGCACAAC...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073961.8
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CTAGGAGACCCCTTGTACACAGAGGCTCTGTGTCTTACGGAGGCTGAATTTTGCCTCCTGCTTAGGGCCTaGAGCTGCTATGAATTTGTT +
Preference number: 5 (lower is better)
Translates to: LGDPLYTEALCLTEAEFCLLLRA*SCYEFV
Trigger: AACAAATTCATAGCAGCTCAAGGCCCTAAGCAGGAG...GCAAAATTCAGCCTCCGTAAGACACAGAGCCTCTGTGTACAAGGGGTCTCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACCAGCATGTGAGGGGTaGAGTGTCTTCACTTTCTTC +
Preference number: 5 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVPACEG*SVFTFF
Trigger: GAAGAAAGTGAAGACACTCAACCCCTCACATGCTGG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATTTCATGATTCGCACGTaGGTCAGCTTCCTGAACTCT +
Preference number: 5 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDFMIRT*VSFLNS
Trigger: AGAGTTCAGGAAGCTGACCAACGTGCGAATCATGAA...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS CCA 90 bp CTTTATCTCTATAGTTATATCTCCATGAGTCACCGAGCCCTCCGTTaGCCAATACTGGTAGCATTTATCCTGTTCCCGCTCCTGCACCTC +
Preference number: 5 (lower is better)
Translates to: LYLYSYISMSHRALR*PILVAFILFPLLHL
Trigger: GAGGTGCAGGAGCGGGAACAGGATAAATGCTACCAGTATTGGCCAACGGAGGGCTCGGTGACTCATGGAGATATAACTATAGAGATAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS-3UTR CAA 90 bp CTTGGAAAACACAGGTGTGCATTCCTCGTTCATCCAGCCCATGGAGAGAGAGTACTCCTGCTTAGGGCCTaGAGCTGCTATGAATTTGTT +
Preference number: 5 (lower is better)
Translates to: LGKHRCAFLVHPAHGERVLLLRA*SCYEFV
Trigger: AACAAATTCATAGCAGCTCAAGGCCCTAAGCAGGAG...TACTCTCTCTCCATGGGCTGGATGAACGAGGAATGCACACCTGTGTTTTCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp GTCCCTTGTACACGAACAAGAACAAACTGTGCAATAGGCGAGCATGATCAGTCCACTTTCTTCAGGAACTaGAGCATCCCGATGGGGGTA +
Preference number: 5 (lower is better)
Translates to: VPCTRTRTNCAIGEHDQSTFFRN*SIPMGV
Trigger: TACCCCCATCGGGATGCTCAAGTTCCTGAAGAAAGT...GGACTGATCATGCTCGCCTATTGCACAGTTTGTTCTTGTTCGTGTACAAGGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp AGCAAGTCACACAGTGACCAAGAGACGCACCTGATCAGAACGCTCAGCTCTGATATAGTCTGTGAACTCTaGCCCTCTTTTCATGGACAG +
Preference number: 5 (lower is better)
Translates to: SKSHSDQETHLIRTLSSDIVCEL*PSFHGQ
Trigger: CTGTCCATGAAAAGAGGGCAAGAGTTCACAGACTAT...ATCAGAGCTGAGCGTTCTGATCAGGTGCGTCTCTTGGTCACTGTGTGACTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTCACCGAGCCCTCCGTaGGCCAATACTGGTAGCATT +
Preference number: 5 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYSPSPP*ANTGSI
Trigger: AATGCTACCAGTATTGGCCAACGGAGGGCTCGGTGA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACCCAGCATGTGAGGGGTaGAGTGTCTTCACTTTCTTC +
Preference number: 5 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYPACEG*SVFTFF
Trigger: GAAGAAAGTGAAGACACTCAACCCCTCACATGCTGG...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACCTCCTGCTTAGGGCCTaGAGCTGCTATGAATTTGTT +
Preference number: 5 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYLLLRA*SCYEFV
Trigger: AACAAATTCATAGCAGCTCAAGGCCCTAAGCAGGAG...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS-3UTR CAA 90 bp TGTCATAAACACCGGAGCTTCTTTGAAGGAAGAAGAAAAGGACATGCCAGGTACTTCATGATTCGCACGTaGGTCAGCTTCCTGAACTCT +
Preference number: 5 (lower is better)
Translates to: CHKHRSFFEGRRKGHARYFMIRT*VSFLNS
Trigger: AGAGTTCAGGAAGCTGACCAACGTGCGAATCATGAA...GTACCTGGCATGTCCTTTTCTTCTTCCTTCAAAGAAGCTCCGGTGTTTATGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073961.8
ENSMUST00000209979.2
ENSMUST00000211140.2
CDS CAA 90 bp CAGGGTCCGGAGGGCCTGCAGTTGTGCTGGTCCAGTTGCTCTCTGTaGGGGTGGTGTCGTTGCCCTGGCCAGCTCTGGCGAGCGACAAGC +
Preference number: 6 (lower is better)
Translates to: QGPEGLQLCWSSCSL*GWCRCPGQLWRATS
Trigger: GCTTGTCGCTCGCCAGAGCTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp CAGGGTCCGGAGGGCCTGCAGTTGTGCTGGTCCAGTTaGTCTCTGTTGGGGTGGTGTCGTTGCCCTGGCCAG +
Preference number: 6 (lower is better)
Translates to: QGPEGLQLCWSS*SLLGWCRCPGQ
Trigger: CTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp GAGCAGCGGCTGGGATGCACCAGGGTCCGGAGGGCCTaGAGTTGTGCTGGTCCAGTTGCTCTCTGTTGGGGT +
Preference number: 6 (lower is better)
Translates to: EQRLGCTRVRRA*SCAGPVALCWG
Trigger: ACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCTGGTGCATCCCAGCCGCTGCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 72 bp CCAGGGTCCGGAGGGCCTGCAGTTGTGCTGGTCCAGTaGCTCTCTGTTGGGGTGGTGTCGTTGCCCTGGCCA +
Preference number: 6 (lower is better)
Translates to: PGSGGPAVVLVQ*LSVGVVSLPWP
Trigger: TGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp GCTGGGATGCACCAGGGTCCGGAGGGCCTGCAGTTGTaGTGGTCCAGTTGCTCTCTGTTGGGGTGGTGTCGT +
Preference number: 6 (lower is better)
Translates to: AGMHQGPEGLQL*WSSCSLLGWCR
Trigger: ACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCTGGTGCATCCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 72 bp AGGGCCTGCAGTTGTGCTGGTCCAGTTGCTCTCTGTTaGGGTGGTGTCGTTGCCCTGGCCAGCTCTGGCGAG +
Preference number: 6 (lower is better)
Translates to: RACSCAGPVALC*GGVVALASSGE
Trigger: CTCGCCAGAGCTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 72 bp GGGATGCACCAGGGTCCGGAGGGCCTGCAGTTGTGCTaGTCCAGTTGCTCTCTGTTGGGGTGGTGTCGTTGC +
Preference number: 6 (lower is better)
Translates to: GMHQGPEGLQLC*SSCSLLGWCRC
Trigger: GCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTCCGGACCCTGGTGCATCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 72 bp GAGGGCCTGCAGTTGTGCTGGTCCAGTTGCTCTCTGTaGGGGTGGTGTCGTTGCCCTGGCCAGCTCTGGCGA +
Preference number: 6 (lower is better)
Translates to: EGLQLCWSSCSL*GWCRCPGQLWR
Trigger: TCGCCAGAGCTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGGCCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 72 bp CTGCAGTTGTGCTGGTCCAGTTGCTCTCTGTTGGGGTaGTGTCGTTGCCCTGGCCAGCTCTGGCGAGCGACA +
Preference number: 6 (lower is better)
Translates to: LQLCWSSCSLLG*CRCPGQLWRAT
Trigger: TGTCGCTCGCCAGAGCTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 72 bp CTGGTGAAGTGCAGCTGTGAGACCAGCCGCGGGGCTTaGCAGCTGTCTGGGAGTTGCGGATGGATGCAGAAC +
Preference number: 6 (lower is better)
Translates to: LVKCSCETSRGA*QLSGSCGWMQN
Trigger: GTTCTGCATCCATCCGCAACTCCCAGACAGCTGCAAAGCCCCGCGGCTGGTCTCACAGCTGCACTTCACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 90 bp CCTGCAGTTGTGCTGGTCCAGTTGCTCTCTGTTGGGGTGGTGTCGTaGCCCTGGCCAGCTCTGGCGAGCGACAAGCTAAAACTTGCCAGC +
Preference number: 6 (lower is better)
Translates to: PAVVLVQLLSVGVVS*PWPALASDKLKLAS
Trigger: GCTGGCAAGTTTTAGCTTGTCGCTCGCCAGAGCTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGACCAGCACAACTGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp CTTCCTCCAGCCCGATCTTGTCAAAATGGGTGGCTGTaGTATGGAGCGTCTGCAGGTGCCTCTCCAGGGAGG +
Preference number: 6 (lower is better)
Translates to: LPPARSCQNGWL*YGASAGASPGR
Trigger: CCTCCCTGGAGAGGCACCTGCAGACGCTCCATAGCACAGCCACCCATTTTGACAAGATCGGGCTGGAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 72 bp GTCCAGTTGCTCTCTGTTGGGGTGGTGTCGTTGCCCTaGCCAGCTCTGGCGAGCGACAAGCTAAAACTTGCC +
Preference number: 6 (lower is better)
Translates to: VQLLSVGVVSLP*PALASDKLKLA
Trigger: GGCAAGTTTTAGCTTGTCGCTCGCCAGAGCTGGCCAGGGCAACGACACCACCCCAACAGAGAGCAACTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 72 bp CCTCCAGGTGCTCCACGGGGATGGGGAAGAACTTCTTaGGGCCTGATGGAGATCTGCTCAGCAGCATCACTC +
Preference number: 6 (lower is better)
Translates to: PPGAPRGWGRTS*GLMEICSAASL
Trigger: GAGTGATGCTGCTGAGCAGATCTCCATCAGGCCCCAAGAAGTTCTTCCCCATCCCCGTGGAGCACCTGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 72 bp TCTGGCGAGCGACAAGCTAAAACTTGCCAGCAGGAGTaGACAGAAGGGCTCCATGGTGCACCTCCCAGGGAC +
Preference number: 6 (lower is better)
Translates to: SGERQAKTCQQE*TEGLHGAPPRD
Trigger: GTCCCTGGGAGGTGCACCATGGAGCCCTTCTGTCCACTCCTGCTGGCAAGTTTTAGCTTGTCGCTCGCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209256.2
CDS GCA 72 bp GCTGCTGCTTCTGCACTGCTGCAATCAGGTCAATCATaGCTTTGCCTTCAGCGGGGATGCCAACCTCAGGCC +
Preference number: 6 (lower is better)
Translates to: AAASALLQSGQS*LCLQRGCQPQA
Trigger: GGCCTGAGGTTGGCATCCCCGCTGAAGGCAAAGGCATGATTGACCTGATTGCAGCAGTGCAGAAGCAGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp GGGGTGGTTGCCCGTCTGCTGCTGCTGCTTCTGCACTaGTGCAATCAGGTCAATCATGCCTTTGCCTTCAGC +
Preference number: 6 (lower is better)
Translates to: GVVARLLLLLLH*CNQVNHAFAFS
Trigger: GCTGAAGGCAAAGGCATGATTGACCTGATTGCAGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAACCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp TGCACGGTGATGGGGTGGTTGCCCGTCTGCTGCTGCTaGTTCTGCACTGCTGCAATCAGGTCAATCATGCCT +
Preference number: 6 (lower is better)
Translates to: CTVMGWLPVCCC*FCTAAIRSIMP
Trigger: AGGCATGATTGACCTGATTGCAGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAACCACCCCATCACCGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp CAGTGCACGGTGATGGGGTGGTTGCCCGTCTGCTGCTaGTGCTTCTGCACTGCTGCAATCAGGTCAATCATG +
Preference number: 6 (lower is better)
Translates to: QCTVMGWLPVCC*CFCTAAIRSIM
Trigger: CATGATTGACCTGATTGCAGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAACCACCCCATCACCGTGCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp GTGATGGGGTGGTTGCCCGTCTGCTGCTGCTGCTTCTaGACTGCTGCAATCAGGTCAATCATGCCTTTGCCT +
Preference number: 6 (lower is better)
Translates to: VMGWLPVCCCCF*TAAIRSIMPLP
Trigger: AGGCAAAGGCATGATTGACCTGATTGCAGCAGTGCAGAAGCAGCAGCAGCAGACGGGCAACCACCCCATCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 90 bp ATTCGCACGTTGGTCAGCTTCCTGAACTCTTCCTCCAGCCCGATCTaGTCAAAATGGGTGGCTGTGCTATGGAGCGTCTGCAGGTGCCTC +
Preference number: 6 (lower is better)
Translates to: IRTLVSFLNSSSSPI*SKWVAVLWSVCRCL
Trigger: GAGGCACCTGCAGACGCTCCATAGCACAGCCACCCATTTTGACAAGATCGGGCTGGAGGAAGAGTTCAGGAAGCTGACCAACGTGCGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp ATCTTGTCAAAATGGGTGGCTGTGCTATGGAGCGTCTaGAGGTGCCTCTCCAGGGAGGACACATCCAGCTCT +
Preference number: 6 (lower is better)
Translates to: ILSKWVAVLWSV*RCLSREDTSSS
Trigger: AGAGCTGGATGTGTCCTCCCTGGAGAGGCACCTGCAGACGCTCCATAGCACAGCCACCCATTTTGACAAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 72 bp TTCCTGAACTCTTCCTCCAGCCCGATCTTGTCAAAATaGGTGGCTGTGCTATGGAGCGTCTGCAGGTGCCTC +
Preference number: 6 (lower is better)
Translates to: FLNSSSSPILSK*VAVLWSVCRCL
Trigger: GAGGCACCTGCAGACGCTCCATAGCACAGCCACCCATTTTGACAAGATCGGGCTGGAGGAAGAGTTCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 72 bp TCTGGCGAGCGACAAGCTAAAACTTGCCAGCAGGAGTaGACAGAAGGGCTCCATGGTGCACCAAGGGGAAAT +
Preference number: 6 (lower is better)
Translates to: SGERQAKTCQQE*TEGLHGAPRGN
Trigger: ATTTCCCCTTGGTGCACCATGGAGCCCTTCTGTCCACTCCTGCTGGCAAGTTTTAGCTTGTCGCTCGCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211788.2
CDS CAA 90 bp TGCTGCTCTTGCTCTTCTAAGATCCCGTTAGGCATTTTCTTGTCGTaGCTGCTGACCACGGCCTTCCTCTGCTTCCGGAACCAGGTGAGC +
Preference number: 6 (lower is better)
Translates to: CCSCSSKIPLGIFLS*LLTTAFLCFRNQVS
Trigger: GCTCACCTGGTTCCGGAAGCAGAGGAAGGCCGTGGTCAGCAGCAACGACAAGAAAATGCCTAACGGGATCTTAGAAGAGCAAGAGCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209979.2
CDS GCA 72 bp TCCCTCGGCTTTCACTCGTTCCAAAATGTTACTGAGTaGTATGAATGTACCTGTCCGCCCTGCTCCCGCGCT +
Preference number: 6 (lower is better)
Translates to: SLGFHSFQNVTE*YECTCPPCSRA
Trigger: AGCGCGGGAGCAGGGCGGACAGGTACATTCATAGCACTCAGTAACATTTTGGAACGAGTGAAAGCCGAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CCA 72 bp AAATGGAATTGTCTCACCATGCGGACCTGCTCTTCCTaGCGGGCCAGGGGCTGTTTGAAGGTAACCAGAAAG +
Preference number: 6 (lower is better)
Translates to: KWNCLTMRTCSS*RARGCLKVTRK
Trigger: CTTTCTGGTTACCTTCAAACAGCCCCTGGCCCGCCAGGAAGAGCAGGTCCGCATGGTGAGACAATTCCATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 72 bp CCAGATGGCAATGAATTGAACTCCTCTCGGAATCGCTaGCAGTCATCCGCAGATCTCACCCGGATCTCCTCC +
Preference number: 6 (lower is better)
Translates to: PDGNELNSSRNR*QSSADLTRISS
Trigger: GGAGGAGATCCGGGTGAGATCTGCGGATGACTGCAAGCGATTCCGAGAGGAGTTCAATTCATTGCCATCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 72 bp TTGGTCAGCTTCCTGAACTCTTCCTCCAGCCCGATCTaGTCAAAATGGGTGGCTGTGCTATGGAGCGTCTGC +
Preference number: 6 (lower is better)
Translates to: LVSFLNSSSSPI*SKWVAVLWSVC
Trigger: GCAGACGCTCCATAGCACAGCCACCCATTTTGACAAGATCGGGCTGGAGGAAGAGTTCAGGAAGCTGACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 72 bp TTGCCCGTCCTCATGTTCTCCTTCATGATTCGCACGTaGGTCAGCTTCCTGAACTCTTCCTCCAGCCCGATC +
Preference number: 6 (lower is better)
Translates to: LPVLMFSFMIRT*VSFLNSSSSPI
Trigger: GATCGGGCTGGAGGAAGAGTTCAGGAAGCTGACCAACGTGCGAATCATGAAGGAGAACATGAGGACGGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS TCA 72 bp ATTTATCCTGTTCCCGCTCCTGCACCTCCGTCAGCATaGCGATTGTGTGAGACTTCCACTCCCATACCATCC +
Preference number: 6 (lower is better)
Translates to: IYPVPAPAPPSA*RLCETSTPIPS
Trigger: GGATGGTATGGGAGTGGAAGTCTCACACAATCGTCATGCTGACGGAGGTGCAGGAGCGGGAACAGGATAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp GGGCCTGATGGAGATCTGCTCAGCAGCATCACTCTCTaGTGCTCTTGCTCTTCTAAGATCCCGTTAGGCATT +
Preference number: 6 (lower is better)
Translates to: GPDGDLLSSITL*CSCSSKIPLGI
Trigger: AATGCCTAACGGGATCTTAGAAGAGCAAGAGCAGCAGAGAGTGATGCTGCTGAGCAGATCTCCATCAGGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp ATTTTCTTGTCGTTGCTGCTGACCACGGCCTTCCTCTaGTTCCGGAACCAGGTGAGCCGGGAAAAGTTCTTT +
Preference number: 6 (lower is better)
Translates to: IFLSLLLTTAFL*FRNQVSREKFF
Trigger: AAAGAACTTTTCCCGGCTCACCTGGTTCCGGAAGCAGAGGAAGGCCGTGGTCAGCAGCAACGACAAGAAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209979.2
CDS CAA 72 bp TGCTCTTCTAAGATCCCGTTAGGCATTTTCTTGTCGTaGCTGCTGACCACGGCCTTCCTCTGCTTCCGGAAC +
Preference number: 6 (lower is better)
Translates to: CSSKIPLGIFLS*LLTTAFLCFRN
Trigger: GTTCCGGAAGCAGAGGAAGGCCGTGGTCAGCAGCAACGACAAGAAAATGCCTAACGGGATCTTAGAAGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS TCA 72 bp CAAAGGTTCCTTGTATGTGTCCAGATGGCAATGAATTaGACTCCTCTCGGAATCGCTTGCAGTCATCCGCAG +
Preference number: 6 (lower is better)
Translates to: QRFLVCVQMAMN*TPLGIACSHPQ
Trigger: CTGCGGATGACTGCAAGCGATTCCGAGAGGAGTTCAATTCATTGCCATCTGGACACATACAAGGAACCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp CGGATTCTAGACACAAACTCAAAGACGTCAACCTTCTaGTCCGAGTGTATCATGTCCATCATGGCATCGATC +
Preference number: 6 (lower is better)
Translates to: RILDTNSKTSTF*SECIMSIMASI
Trigger: GATCGATGCCATGATGGACATGATACACTCGGAGCAGAAGGTTGACGTCTTTGAGTTTGTGTCTAGAATCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 72 bp TCAAAGGTTCCTTGTATGTGTCCAGATGGCAATGAATaGAACTCCTCTCGGAATCGCTTGCAGTCATCCGCA +
Preference number: 6 (lower is better)
Translates to: SKVPCMCPDGNE*NSSRNRLQSSA
Trigger: TGCGGATGACTGCAAGCGATTCCGAGAGGAGTTCAATTCATTGCCATCTGGACACATACAAGGAACCTTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS TCA 72 bp CCCCATAGAGGTAGTATTCCAGTAAGGCTTGGTAGATaGATGTATACTGAACATCCGTCTGGACCATCTGAG +
Preference number: 6 (lower is better)
Translates to: PHRGSIPVRLGR*MYTEHPSGPSE
Trigger: CTCAGATGGTCCAGACGGATGTTCAGTATACATTCATCTACCAAGCCTTACTGGAATACTACCTCTATGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS CAA 72 bp AGCATTAATGTAGTCAGAGCAGGGGATTCCATCCACTaGGCTCAAAATCACTCTGCAATGATCATTGGGCAG +
Preference number: 6 (lower is better)
Translates to: SINVVRAGDSIH*AQNHSAMIIGQ
Trigger: CTGCCCAATGATCATTGCAGAGTGATTTTGAGCCAAGTGGATGGAATCCCCTGCTCTGACTACATTAATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp GAAGTAGTCCTTCTGCCTGTAGCCATCTATGAAGGATaGGTTGATATAGTCTGTGAACTCTTGCCCTCTTTT +
Preference number: 6 (lower is better)
Translates to: EVVLLPVAIYEG*VDIVCELLPSF
Trigger: AAAAGAGGGCAAGAGTTCACAGACTATATCAACGCATCCTTCATAGATGGCTACAGGCAGAAGGACTACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2
CDS GCA 72 bp GAAGTCATTCACTGTCTCCTGCTTAGGGCCTTGAGCTaGTATGAATTTGTTCTTTTCTTTGTAGCCATCGAT +
Preference number: 6 (lower is better)
Translates to: EVIHCLLLRALS*YEFVLFFVAID
Trigger: ATCGATGGCTACAAAGAAAAGAACAAATTCATAGCAGCTCAAGGCCCTAAGCAGGAGACAGTGAATGACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073961.8
ENSMUST00000209256.2
ENSMUST00000209979.2
ENSMUST00000210833.2
ENSMUST00000211140.2
ENSMUST00000211788.2