Pregenerated sensors for PTPRCAP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045826Ensembl transcript IDs: ENSMUST00000061086.9, ENSMUST00000236632.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ATGTTTGCCCAGTGCCTGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGAAAAGTCAGAGGCTaGGGCAGGAACAGGACAAGC | + |
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Preference number: 2 (lower is better) Translates to: MFAQCLSGMHTHTLGNWLGKVRG*GRNRTS Trigger: GCTTGTCCTGTTCCTGCCCCAGCCTCTGACTTTTCC...CAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACAGGCACTGGGCAAACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| 3UTR-3UTR TCA 90 bp | GGAGAGGAGGGGATCCTAAAGGACCACGGACCTCAGTGCTTACAAAGTTTTATTGTCAGTCTAAGAAGCTaGTGTAAGGGTGGGGTGACG | + |
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Preference number: 2 (lower is better) Translates to: GEEGILKDHGPQCLQSFIVSLRS*CKGGVT Trigger: CGTCACCCCACCCTTACATCAGCTTCTTAGACTGAC...AATAAAACTTTGTAAGCACTGAGGTCCGTGGTCCTTTAGGATCCCCTCCTCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| 3UTR-3UTR CAA 90 bp | TGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGTCAGTCTAAGAAAGGTCCAGGGCAGCTaGTGTTTCACCATAACATGC | + |
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Preference number: 3 (lower is better) Translates to: CLGCTHTLWGTGWGVSLRKVQGS*CFTITC Trigger: GCATGTTATGGTGAAACACAAGCTGCCCTGGACCTT...TCTTAGACTGACACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| 3UTR GCA 72 bp | GGACCTCAGTGCTTACAAAGTTTTATTTTTAATGTTTaGCCAGTGCCTGTCTGGGATGCACACACACACTCT | + |
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Preference number: 3 (lower is better) Translates to: GPQCLQSFIFNV*PVPVWDAHTHS Trigger: AGAGTGTGTGTGTGCATCCCAGACAGGCACTGGGCAAACATTAAAAATAAAACTTTGTAAGCACTGAGGTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR CCA 90 bp | TGCCCAGTGCCTGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGAGCGGCCTGCAGGGCTaGCCCAGAGCAGGCGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: CPVPVWDAHTHSGELVGVSGLQG*PRAGGR Trigger: CCTGCCGCCTGCTCTGGGCCAGCCCTGCAGGCCGCT...CACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACAGGCACTGGGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR GCA 90 bp | TGCCCAGTGCCTGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGGCGAAGCCAGCGGCCTaGAGGGCTGGCCCAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: CPVPVWDAHTHSGELVGVAKPAA*RAGPEQ Trigger: CTGCTCTGGGCCAGCCCTGCAGGCCGCTGGCTTCGC...CACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACAGGCACTGGGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR CCA 90 bp | GTGCCTGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGTCAGTCGTGACCCGGAGGCCCTaGCCCCCTGCTCCTCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: VPVWDAHTHSGELVGVSVVTRRP*PPAPPA Trigger: CGCTGGAGGAGCAGGGGGCCAGGGCCTCCGGGTCAC...GACTGACACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACAGGCAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR CCA 90 bp | GTGCCTGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGTCAGTCAGCAGGCGGCAGGTGTaGCCCCACAAGGCAGCACCC | + |
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Preference number: 4 (lower is better) Translates to: VPVWDAHTHSGELVGVSVSRRQV*PHKAAP Trigger: GGGTGCTGCCTTGTGGGGCCACACCTGCCGCCTGCT...GACTGACACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACAGGCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR TCA 90 bp | CTGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGTCAGTCTAAGGAGCCCACAGGACCCTaGGAGCTCAGGCCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LSGMHTHTLGNWLGCQSKEPTGP*ELRPRP Trigger: GGGCCTGGGCCTGAGCTCTCAGGGTCCTGTGGGCTC...CTTAGACTGACACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR CCA 90 bp | TGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGTCAGTCTAAGAAGAGGCCAGTGCCCCTaGCAGGGCCATCAGCACCCC | + |
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Preference number: 4 (lower is better) Translates to: CLGCTHTLWGTGWGVSLRRGQCP*QGHQHP Trigger: GGGGTGCTGATGGCCCTGCCAGGGGCACTGGCCTCT...TCTTAGACTGACACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR CCA 90 bp | ATGTTTGCCCAGTGCCTGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGCTGCTCCTCTTCCTTaGCGGCAGCTTCCTCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: MFAQCLSGMHTHTLGNWLAAPLP*RQLPRG Trigger: GCCCCGAGGAAGCTGCCGCCAAGGAAGAGGAGCAGC...CAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACAGGCACTGGGCAAACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR TCA 90 bp | CTGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGTCAGTCTAAGCCAAGGCTAGGGCAGTaGCCAGCAGCAGCAGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: LSGMHTHTLGNWLGCQSKPRLGQ*PAAAGA Trigger: TGCTCCTGCTGCTGCTGGTCACTGCCCTAGCCTTGG...CTTAGACTGACACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR TCA 90 bp | CTGTCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGTCAGTCTAAGCGGGTCTGCTCTGCTTaGCACCGCTGCTCCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: LSGMHTHTLGNWLGCQSKRVCSA*HRCSSS Trigger: GGAAGAGGAGCAGCGGTGTCAAGCAGAGCAGACCCG...CTTAGACTGACACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR TCA 90 bp | TTTCACCATAACATGCATGGGAAAAGTCAGAGGCTGGGGCAGGAACAGGACAAGCTCGGCGCTGCTGCCTaGGCCCACAGGACCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: FHHNMHGKSQRLGQEQDKLGAAA*AHRTLR Trigger: TCTCAGGGTCCTGTGGGCTCAGGCAGCAGCGCCGAG...CTTGTCCTGTTCCTGCCCCAGCCTCTGACTTTTCCCATGCATGTTATGGTGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR GCA 90 bp | CTTGTGTTTCACCATAACATGCATGGGAAAAGTCAGAGGCTGGGGCAGGAACAGTGCCCCAGAGGCCAGTaGCCCTGGCAGGGCCATCAG | + |
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Preference number: 4 (lower is better) Translates to: LVFHHNMHGKSQRLGQEQCPRGQ*PWQGHQ Trigger: CTGATGGCCCTGCCAGGGGCACTGGCCTCTGGGGCA...CTGTTCCTGCCCCAGCCTCTGACTTTTCCCATGCATGTTATGGTGAAACACAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR GCA 90 bp | TTATTTTTAATGTTTGCCCAGTGCCTGTCTGGGATGCACACACACACTCTGGGGGCAGGGCCTCGGCGCTaGTGCCTGAGCCCACAGGAC | + |
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Preference number: 4 (lower is better) Translates to: LFLMFAQCLSGMHTHTLGAGPRR*CLSPQD Trigger: GTCCTGTGGGCTCAGGCAGCAGCGCCGAGGCCCTGC...CCCCAGAGTGTGTGTGTGCATCCCAGACAGGCACTGGGCAAACATTAAAAATAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR GCA 90 bp | TCTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGTCAGTCTAAGAAGATCTCGGGTCTGCTCTaGTTGACACCGCTGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SGMHTHTLGNWLGCQSKKISGLL*LTPLLL Trigger: GAGGAGCAGCGGTGTCAAGCAGAGCAGACCCGAGAT...CTTCTTAGACTGACACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR TCA 90 bp | TTATTTTTAATGTTTGCCCAGTGCCTGTCTGGGATGCACACACACACTCTGGGGGCAGCAGGACAATGGTaGCCACACTGGAGCCCACAC | + |
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Preference number: 4 (lower is better) Translates to: LFLMFAQCLSGMHTHTLGAAGQW*PHWSPH Trigger: GTGTGGGCTCCAGTGTGGTCACCATTGTCCTGCTGC...CCCCAGAGTGTGTGTGTGCATCCCAGACAGGCACTGGGCAAACATTAAAAATAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR GCA 90 bp | CTGGGATGCACACACACACTCTGGGGAACTGGTTGGGGTGTCAGTCTAAGAAGCTATCACAAAATCTTCTaGATCCTCTTCATCCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: LGCTHTLWGTGWGVSLRSYHKIF*ILFILR Trigger: CCGGAGGATGAAGAGGATGCAGAAGATTTTGTGATA...GCTTCTTAGACTGACACCCCAACCAGTTCCCCAGAGTGTGTGTGTGCATCCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS-3UTR GCA 90 bp | TTTATTTTTAATGTTTGCCCAGTGCCTGTCTGGGATGCACACACACACTCTGGGCTACCAGAAAAGGCATaGAGGTCACTCAGCAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: FIFNVCPVPVWDAHTHSGLPEKA*RSLSRA Trigger: GGCCCTGCTGAGTGACCTGCATGCCTTTTCTGGTAG...CCCAGAGTGTGTGTGTGCATCCCAGACAGGCACTGGGCAAACATTAAAAATAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS CCA 90 bp | GGGATTCCAGCTCAGTGCGGGCGCGAAGCCAGCGGCCTGCAGGGCTaGCCCAGAGCAGGCGGCAGGTGTGGCCCCACAAGGCAGCACCCA | + |
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Preference number: 5 (lower is better) Translates to: GIPAQCGREASGLQG*PRAGGRCGPTRQHP Trigger: TGGGTGCTGCCTTGTGGGGCCACACCTGCCGCCTGCTCTGGGCCAGCCCTGCAGGCCGCTGGCTTCGCGCCCGCACTGAGCTGGAATCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061086.9 ENSMUST00000236632.2 |
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| CDS GCA 90 bp | CTTCATCCTCCGGCGGCCCTGATTCTTCTGGGGATTCCAGCTCAGTaGGGGCGCGAAGCCAGCGGCCTGCAGGGCTGGCCCAGAGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: LHPPAALILLGIPAQ*GREASGLQGWPRAG Trigger: GCCTGCTCTGGGCCAGCCCTGCAGGCCGCTGGCTTCGCGCCCGCACTGAGCTGGAATCCCCAGAAGAATCAGGGCCGCCGGAGGATGAAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061086.9 ENSMUST00000236632.2 |
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| CDS GCA 90 bp | CACACTGGAGCCCACACCGTCCTCTGGGTCTGCCCCAGAGGCCAGTaGCCCTGGCAGGGCCATCAGCACCCCAAATCTGAGGGTACCAGG | + |
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Preference number: 5 (lower is better) Translates to: HTGAHTVLWVCPRGQ*PWQGHQHPKSEGTR Trigger: CCTGGTACCCTCAGATTTGGGGTGCTGATGGCCCTGCCAGGGGCACTGGCCTCTGGGGCAGACCCAGAGGACGGTGTGGGCTCCAGTGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061086.9 ENSMUST00000236632.2 |
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| CDS GCA 90 bp | TACCAGAAAAGGCATGCAGGTCACTCAGCAGGGCCTCGGCGCTGCTaGCTGAGCCCACAGGACCCTGAGAGCTCAGGCCCAGGCCCCCGT | + |
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Preference number: 5 (lower is better) Translates to: YQKRHAGHSAGPRRC*LSPQDPESSGPGPR Trigger: ACGGGGGCCTGGGCCTGAGCTCTCAGGGTCCTGTGGGCTCAGGCAGCAGCGCCGAGGCCCTGCTGAGTGACCTGCATGCCTTTTCTGGTA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS GCA 90 bp | CACTACCAGAAAAGGCATGCAGGTCACTCAGCAGGGCCTCGGCGCTaGTGCCTGAGCCCACAGGACCCTGAGAGCTCAGGCCCAGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: HYQKRHAGHSAGPRR*CLSPQDPESSGPGP Trigger: GGGGCCTGGGCCTGAGCTCTCAGGGTCCTGTGGGCTCAGGCAGCAGCGCCGAGGCCCTGCTGAGTGACCTGCATGCCTTTTCTGGTAGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS TCA 90 bp | CCCCCGTCACTGTCTGTGTCACGTGGATCTCGGGTCTGCTCTGCTTaGCACCGCTGCTCCTCTTCCTTGGCGGCAGCTTCCTCGGGGCCA | + |
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Preference number: 5 (lower is better) Translates to: PPSLSVSRGSRVCSA*HRCSSSLAAASSGP Trigger: TGGCCCCGAGGAAGCTGCCGCCAAGGAAGAGGAGCAGCGGTGTCAAGCAGAGCAGACCCGAGATCCACGTGACACAGACAGTGACGGGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS GCA 90 bp | GCTCCTCCAGCGCTGTCATCCCAGGCAGCACTACCAGAAAAGGCATaGAGGTCACTCAGCAGGGCCTCGGCGCTGCTGCCTGAGCCCACA | + |
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Preference number: 5 (lower is better) Translates to: APPALSSQAALPEKA*RSLSRASALLPEPT Trigger: TGTGGGCTCAGGCAGCAGCGCCGAGGCCCTGCTGAGTGACCTGCATGCCTTTTCTGGTAGTGCTGCCTGGGATGACAGCGCTGGAGGAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS CCA 90 bp | GTGGATCTCGGGTCTGCTCTGCTTGACACCGCTGCTCCTCTTCCTTaGCGGCAGCTTCCTCGGGGCCACCATCTATCACAAAATCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: VDLGSALLDTAAPLP*RQLPRGHHLSQNLL Trigger: CAGAAGATTTTGTGATAGATGGTGGCCCCGAGGAAGCTGCCGCCAAGGAAGAGGAGCAGCGGTGTCAAGCAGAGCAGACCCGAGATCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS CCA 72 bp | GCTCAGTGCGGGCGCGAAGCCAGCGGCCTGCAGGGCTaGCCCAGAGCAGGCGGCAGGTGTGGCCCCACAAGG | + |
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Preference number: 6 (lower is better) Translates to: AQCGREASGLQG*PRAGGRCGPTR Trigger: CCTTGTGGGGCCACACCTGCCGCCTGCTCTGGGCCAGCCCTGCAGGCCGCTGGCTTCGCGCCCGCACTGAGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061086.9 ENSMUST00000236632.2 |
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| CDS GCA 72 bp | AGGCATGCAGGTCACTCAGCAGGGCCTCGGCGCTGCTaGCTGAGCCCACAGGACCCTGAGAGCTCAGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: RHAGHSAGPRRC*LSPQDPESSGP Trigger: TGGGCCTGAGCTCTCAGGGTCCTGTGGGCTCAGGCAGCAGCGCCGAGGCCCTGCTGAGTGACCTGCATGCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS GCA 72 bp | AAAAGGCATGCAGGTCACTCAGCAGGGCCTCGGCGCTaGTGCCTGAGCCCACAGGACCCTGAGAGCTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: KRHAGHSAGPRR*CLSPQDPESSG Trigger: GCCTGAGCTCTCAGGGTCCTGTGGGCTCAGGCAGCAGCGCCGAGGCCCTGCTGAGTGACCTGCATGCCTTTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS CCA 72 bp | GCTCAGGCCCAGGCCCCCGTCACTGTCTGTGTCACGTaGATCTCGGGTCTGCTCTGCTTGACACCGCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: AQAQAPVTVCVT*ISGLLCLTPLL Trigger: GAGCAGCGGTGTCAAGCAGAGCAGACCCGAGATCCACGTGACACAGACAGTGACGGGGGCCTGGGCCTGAGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS GCA 72 bp | GCGCTGTCATCCCAGGCAGCACTACCAGAAAAGGCATaGAGGTCACTCAGCAGGGCCTCGGCGCTGCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: ALSSQAALPEKA*RSLSRASALLP Trigger: AGGCAGCAGCGCCGAGGCCCTGCTGAGTGACCTGCATGCCTTTTCTGGTAGTGCTGCCTGGGATGACAGCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061086.9 |
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| CDS TCA 72 bp | AAAATCTTCTGCATCCTCTTCATCCTCCGGCGGCCCTaGTTCTTCTGGGGATTCCAGCTCAGTGCGGGCGCG | + |
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Preference number: 6 (lower is better) Translates to: KIFCILFILRRP*FFWGFQLSAGA Trigger: CGCGCCCGCACTGAGCTGGAATCCCCAGAAGAATCAGGGCCGCCGGAGGATGAAGAGGATGCAGAAGATTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061086.9 ENSMUST00000236632.2 |
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