Pregenerated sensors for PTPN22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027843Ensembl transcript IDs: ENSMUST00000029433.9, ENSMUST00000146071.8
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGCTGAGATTCCAGGCATaGAAAACCGTCTCCCACGGC | + |
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Preference number: 4 (lower is better) Translates to: LLVKLFPGVLNVCLEDVELRFQA*KTVSHG Trigger: GCCGTGGGAGACGGTTTTTCATGCCTGGAATCTCAG...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAGCACCTGCAGCTCCCTaGGACTGTAATGCTCATGCA | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIAPAAP*DCNAHA Trigger: TGCATGAGCATTACAGTCTCAGGGAGCTGCAGGTGC...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATACAGCTGCGTTTCTCCTaGTTCGGCCCAATAACGCTC | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIQLRFS*FGPITL Trigger: GAGCGTTATTGGGCCGAACCAGGAGAAACGCAGCTG...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGGCCCGTTCCTGGTTATaGCAGCCTTGTTGTTACACC | + |
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Preference number: 4 (lower is better) Translates to: LLVKLFPGVLNVCLEDVEARSWL*QPCCYT Trigger: GGTGTAACAACAAGGCTGTCATAACCAGGAACGGGC...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATATTCTGGGAGAGGAGGTaGAGGAGAACCATCCTGATG | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIFWERR*RRTILM Trigger: CATCAGGATGGTTCTCCTCCACCTCCTCTCCCAGAA...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAGGCCCCTTTGAATTGTaGTACCTGTCCGCTGTGTTT | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIGPFEL*YLSAVF Trigger: AAACACAGCGGACAGGTATCACAATTCAAAGGGGCC...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATACCCACTGCATTCTGGTaGTGCTCCAAATGTTACCAC | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIPTAFW*CSKCYH Trigger: GTGGTAACATTTGGAGCATCACCAGAATGCAGTGGG...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATACAAAGGGAGTTGATTTaGTCCGTTTTACCGGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIQRELI*SVLPAP Trigger: AGGGGCCGGTAAAACGGACCAAATCAACTCCCTTTG...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATACGGCCTTGTACTTGGTaGATTGCCTTTTCAGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIRPCTW*IAFSAS Trigger: TGAAGCTGAAAAGGCAATCCACCAAGTACAAGGCCG...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTGTCGGCCTTGTACTTaGTGGATTGCCTTTTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LLVKLFPGVLNVCLEDVECRPCT*WIAFSA Trigger: AGCTGAAAAGGCAATCCACCAAGTACAAGGCCGACA...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAACGGTGGGGAAAAGCTaGTCAGAGTGTTCATCACTA | + |
|
Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRITVGKS*SECSSL Trigger: TAGTGATGAACACTCTGACCAGCTTTTCCCCACCGT...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGAATAGGGTCTATAGATaGAGGCACATCATGGTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LLVKLFPGVLNVCLEDVENRVYR*RHIMVW Trigger: CCAGACCATGATGTGCCTTCATCTATAGACCCTATT...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGCAAACTCCTCACTGTTaGGTTTCTTTTTCTGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LLVKLFPGVLNVCLEDVEQTPHC*VSFSGL Trigger: AAGCCCAGAAAAAGAAACTCAACAGTGAGGAGTTTG...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGGCTTTGTTCAGGAATTaGGCATTGTGCTTGAATCTC | + |
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Preference number: 4 (lower is better) Translates to: LLVKLFPGVLNVCLEDVEALFRN*ALCLNL Trigger: GAGATTCAAGCACAATGCTCAATTCCTGAACAAAGC...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAATAATTCAGCTCTTCTaGAGAAACATGGGCCACTCT | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIIIQLF*RNMGHS Trigger: AGAGTGGCCCATGTTTCTTCAGAAGAGCTGAATTAT...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATACCTTGTTTGCTATGCTaGTTTGTCGTTTTCACATCC | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIPCLLC*FVVFTS Trigger: GGATGTGAAAACGACAAACCAGCATAGCAAACAAGG...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAAACCCTACAGAGTCATaGCTCTTCATTTCAGATGTC | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRINPTES*LFISDV Trigger: GACATCTGAAATGAAGAGCCATGACTCTGTAGGGTT...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAGATGTCGATCTGATTTaGGACTTCGGAGTTTCACAT | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIDVDLI*DFGVSH Trigger: ATGTGAAACTCCGAAGTCCCAAATCAGATCGACATC...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTGTATCTGTTTTTCTTaGTATTCTTGGGCCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LLVKLFPGVLNVCLEDVECICFS*YSWASE Trigger: CTCAGAGGCCCAAGAATATCAAGAAAAACAGATACA...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAATATCCCAGATGAGCTaGAGAATAGGGTCTATAGAT | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIISQMS*RIGSID Trigger: ATCTATAGACCCTATTCTTCAGCTCATCTGGGATAT...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAATCTCTCTTCCAAGGTaGTTATCAGAGATAACATCC | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIISLPR*LSEITS Trigger: GGATGTTATCTCTGATAATCACCTTGGAAGAGAGAT...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR GCA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTCTTTCAGTAGTTGCTaGAGAATTTCTCTTTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: LLVKLFPGVLNVCLEDVESFSSC*RISLWS Trigger: GGACCAAAGAGAAATTCTGCAGCAACTACTGAAAGA...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR GCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAGCTTCTTTCAGTAGTTaGTGCAGAATTTCTCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIASFSS*CRISLW Trigger: CCAAAGAGAAATTCTGCAGCAACTACTGAAAGAAGC...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR GCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAGAGATAACATCCATGTaGCTCTTAAACAGCTCTAAC | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIEITSM*LLNSSN Trigger: GTTAGAGCTGTTTAAGAGGCACATGGATGTTATCTC...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CCA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTTCACATTCTTGCTTaGTGTAAACCCTACAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: LLVKLFPGVLNVCLEDVEFHILA*CKPYRV Trigger: GACTCTGTAGGGTTTACACCAAGCAAGAATGTGAAA...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR TCA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATATTTGTTTTTCTCTGCTaGATCAGTTCAAAGGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIFVFLC*ISSKGV Trigger: AACTCCCTTTGAACTGATTCAGCAGAGAAAAACAAA...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS TCA 90 bp | TCAAAGGGAGTTGATTTGGTCCGTTTTACCGGCCCCTTTGAATTGTaGTACCTGTCCGCTGTGTTTATGGGCAGAGCACTAGGACACGAC | + |
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Preference number: 5 (lower is better) Translates to: SKGVDLVRFTGPFEL*YLSAVFMGRALGHD Trigger: GTCGTGTCCTAGTGCTCTGCCCATAAACACAGCGGACAGGTATCACAATTCAAAGGGGCCGGTAAAACGGACCAAATCAACTCCCTTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS TCA 90 bp | CAGCTCCCTGAGACTGTAATGCTCATGCAGCTGAGATTCCAGGCATaGAAAACCGTCTCCCACGGCCAAGTCATTTGTTTTTCTCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: QLPETVMLMQLRFQA*KTVSHGQVICFSLL Trigger: CAGCAGAGAAAAACAAATGACTTGGCCGTGGGAGACGGTTTTTCATGCCTGGAATCTCAGCTGCATGAGCATTACAGTCTCAGGGAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS TCA 90 bp | GCTCTTCTGAAGAAACATGGGCCACTCTTTGCACCTGCAGCTCCCTaGGACTGTAATGCTCATGCAGCTGAGATTCCAGGCATGAAAAAC | + |
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Preference number: 5 (lower is better) Translates to: ALLKKHGPLFAPAAP*DCNAHAAEIPGMKN Trigger: GTTTTTCATGCCTGGAATCTCAGCTGCATGAGCATTACAGTCTCAGGGAGCTGCAGGTGCAAAGAGTGGCCCATGTTTCTTCAGAAGAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS-3UTR CAA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATACGACTGGAGAAGCCCTaGCCTGCCCGTTCCTGGTTA | + |
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Preference number: 5 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIRLEKP*PARSWL Trigger: TAACCAGGAACGGGCAGGCAAGGGCTTCTCCAGTCG...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CAA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGAACATGGGCCACTCTTaGCACCTGCAGCTCCCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LLVKLFPGVLNVCLEDVENMGHS*HLQLPE Trigger: CTCAGGGAGCTGCAGGTGCAAAGAGTGGCCCATGTT...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CAA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGAGAAAAGGGGCCAAATaGCAGCTGCGTTTCTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LLVKLFPGVLNVCLEDVERKGAK*QLRFSW Trigger: CCAGGAGAAACGCAGCTGCAATTTGGCCCCTTTTCT...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CAA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTGTCGGCCTTGTACTaGGTGGATTGCCTTTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: LLVKLFPGVLNVCLEDVELSALY*VDCLFS Trigger: GCTGAAAAGGCAATCCACCAAGTACAAGGCCGACAA...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS TCA 90 bp | CAGAGGACAAGAGTCAGCTTCTACCGTGAGGCTTTGTTCAGGAATTaGGCATTGTGCTTGAATCTCTCTTCCAAGGTGATTATCAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: QRTRVSFYREALFRN*ALCLNLSSKVIIRD Trigger: ATCTCTGATAATCACCTTGGAAGAGAGATTCAAGCACAATGCTCAATTCCTGAACAAAGCCTCACGGTAGAAGCTGACTCTTGTCCTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS GCA 90 bp | CAGTTTAGCTCTAAACAGTTAAAAGAAGGGCTTGATTTAGCCGAGTaGAAAACCAACTCTTCCTCGGCATTCATCGTAGAAGTCCTAAGG | + |
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Preference number: 5 (lower is better) Translates to: QFSSKQLKEGLDLAE*KTNSSSAFIVEVLR Trigger: CCTTAGGACTTCTACGATGAATGCCGAGGAAGAGTTGGTTTTGCACTCGGCTAAATCAAGCCCTTCTTTTAACTGTTTAGAGCTAAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS-3UTR CAA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGGCAAACTCCTCACTGTaGAGTTTCTTTTTCTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: LLVKLFPGVLNVCLEDVEANSSL*SFFFWA Trigger: AGCCCAGAAAAAGAAACTCAACAGTGAGGAGTTTGC...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CAA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATATCAGTTCAAAGGGAGTaGATTTGGTCCGTTTTACCG | + |
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Preference number: 5 (lower is better) Translates to: RGPQCLFRRCGVLCGFRISVQRE*IWSVLP Trigger: CGGTAAAACGGACCAAATCAACTCCCTTTGAACTGA...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CAA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGCCACGGCCAAGTCATTaGTTTTTCTCTGCTGAATCA | + |
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Preference number: 5 (lower is better) Translates to: LLVKLFPGVLNVCLEDVEPRPSH*FFSAES Trigger: TGATTCAGCAGAGAAAAACAAATGACTTGGCCGTGG...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CAA 90 bp | CTCCTTGTGAAACTTTTTCCAGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGAACACAGTCATCTTCTaGGTAACAACGCATATCCCA | + |
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Preference number: 5 (lower is better) Translates to: LLVKLFPGVLNVCLEDVENTVIF*VTTHIP Trigger: TGGGATATGCGTTGTTACCAAGAAGATGACTGTGTT...CTCCACATCTTCTAAACAAACATTGAGGACCCCTGGAAAAAGTTTCACAAGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS-3UTR CAA 90 bp | AGGGGTCCTCAATGTTTGTTTAGAAGATGTGGAGTTCTCTGTGGTTTCAGGATAGGCTTTGTTCAGGAATaGAGCATTGTGCTTGAATCT | + |
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Preference number: 5 (lower is better) Translates to: RGPQCLFRRCGVLCGFRIGFVQE*SIVLES Trigger: AGATTCAAGCACAATGCTCAATTCCTGAACAAAGCC...TATCCTGAAACCACAGAGAACTCCACATCTTCTAAACAAACATTGAGGACCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146071.8 |
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| CDS TCA 72 bp | CGACTGGAGAAGCCCTTGCCTGCCCGTTCCTGGTTATaGCAGCCTTGTTGTTACACCCGCAGTTTAGCTCTA | + |
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Preference number: 6 (lower is better) Translates to: RLEKPLPARSWL*QPCCYTRSLAL Trigger: TAGAGCTAAACTGCGGGTGTAACAACAAGGCTGTCATAACCAGGAACGGGCAGGCAAGGGCTTCTCCAGTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS TCA 72 bp | AAGAAACATGGGCCACTCTTTGCACCTGCAGCTCCCTaGGACTGTAATGCTCATGCAGCTGAGATTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: KKHGPLFAPAAP*DCNAHAAEIPG Trigger: GCCTGGAATCTCAGCTGCATGAGCATTACAGTCTCAGGGAGCTGCAGGTGCAAAGAGTGGCCCATGTTTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS GCA 72 bp | CCTCCAGTGCTCTCCGCTTCAGCCCCTTGTTTGCTATaGTGGTTTGTCGTTTTCACATCCCTCATGGCGTTT | + |
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Preference number: 6 (lower is better) Translates to: PPVLSASAPCLL*WFVVFTSLMAF Trigger: AAACGCCATGAGGGATGTGAAAACGACAAACCAGCATAGCAAACAAGGGGCTGAAGCGGAGAGCACTGGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS GCA 72 bp | AAGACCCTCCAGTGCTCTCCGCTTCAGCCCCTTGTTTaGTATGCTGGTTTGTCGTTTTCACATCCCTCATGG | + |
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Preference number: 6 (lower is better) Translates to: KTLQCSPLQPLV*YAGLSFSHPSW Trigger: CCATGAGGGATGTGAAAACGACAAACCAGCATAGCAAACAAGGGGCTGAAGCGGAGAGCACTGGAGGGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 72 bp | GAAGACCCTCCAGTGCTCTCCGCTTCAGCCCCTTGTTaGCTATGCTGGTTTGTCGTTTTCACATCCCTCATG | + |
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Preference number: 6 (lower is better) Translates to: EDPPVLSASAPC*LCWFVVFTSLM Trigger: CATGAGGGATGTGAAAACGACAAACCAGCATAGCAAACAAGGGGCTGAAGCGGAGAGCACTGGAGGGTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 72 bp | AAGGGAAGACCCTCCAGTGCTCTCCGCTTCAGCCCCTaGTTTGCTATGCTGGTTTGTCGTTTTCACATCCCT | + |
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Preference number: 6 (lower is better) Translates to: KGRPSSALRFSP*FAMLVCRFHIP Trigger: AGGGATGTGAAAACGACAAACCAGCATAGCAAACAAGGGGCTGAAGCGGAGAGCACTGGAGGGTCTTCCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CCA 72 bp | CTACAGCTGTCTCTTGGTTTAACGGTGGGGAAAAGCTaGTCAGAGTGTTCATCACTAGGGAGTCGTGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: LQLSLGLTVGKS*SECSSLGSRVG Trigger: ACCCACACGACTCCCTAGTGATGAACACTCTGACCAGCTTTTCCCCACCGTTAAACCAAGAGACAGCTGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 90 bp | ACGACTGGAGAAGCCCTTGCCTGCCCGTTCCTGGTTATGACAGCCTaGTTGTTACACCCGCAGTTTAGCTCTAAACAGTTAAAAGAAGGG | + |
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Preference number: 6 (lower is better) Translates to: TTGEALACPFLVMTA*LLHPQFSSKQLKEG Trigger: CCCTTCTTTTAACTGTTTAGAGCTAAACTGCGGGTGTAACAACAAGGCTGTCATAACCAGGAACGGGCAGGCAAGGGCTTCTCCAGTCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS TCA 72 bp | CTTTCAGCAGCATCCATGTATAATCAACAGCACAAATaGCACCTGTCCTTCCGCAGCCGGCACTGCAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: LSAASMYNQQHK*HLSFRSRHCSE Trigger: TTCACTGCAGTGCCGGCTGCGGAAGGACAGGTGTCATTTGTGCTGTTGATTATACATGGATGCTGCTGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS TCA 72 bp | GAGAGGAGGTGGAGGAGAACCATCCTGATGTCGATCTaGTTTGGGACTTCGGAGTTTCACATTCTTGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: ERRWRRTILMSI*FGTSEFHILAW Trigger: CCAAGCAAGAATGTGAAACTCCGAAGTCCCAAATCAGATCGACATCAGGATGGTTCTCCTCCACCTCCTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 90 bp | ACTGGAGAAGCCCTTGCCTGCCCGTTCCTGGTTATGACAGCCTTGTaGTTACACCCGCAGTTTAGCTCTAAACAGTTAAAAGAAGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: TGEALACPFLVMTAL*LHPQFSSKQLKEGL Trigger: AAGCCCTTCTTTTAACTGTTTAGAGCTAAACTGCGGGTGTAACAACAAGGCTGTCATAACCAGGAACGGGCAGGCAAGGGCTTCTCCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS TCA 72 bp | GTTGATTTGGTCCGTTTTACCGGCCCCTTTGAATTGTaGTACCTGTCCGCTGTGTTTATGGGCAGAGCACTA | + |
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Preference number: 6 (lower is better) Translates to: VDLVRFTGPFEL*YLSAVFMGRAL Trigger: TAGTGCTCTGCCCATAAACACAGCGGACAGGTATCACAATTCAAAGGGGCCGGTAAAACGGACCAAATCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 72 bp | TTTCTCAGCTTCACAGGATATAGAAAAGGGGCCAAATaGCAGCTGCGTTTCTCCTGGTTCGGCCCAATAACG | + |
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Preference number: 6 (lower is better) Translates to: FLSFTGYRKGAK*QLRFSWFGPIT Trigger: CGTTATTGGGCCGAACCAGGAGAAACGCAGCTGCAATTTGGCCCCTTTTCTATATCCTGTGAAGCTGAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 72 bp | ACACGACCCAAACAACATGGAACCAAAATCCAGACTTaGATACTTCTGAAGGGGCTCTCCCACGACTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: TRPKQHGTKIQT*ILLKGLSHDWR Trigger: TCTCCAGTCGTGGGAGAGCCCCTTCAGAAGTATCAAAGTCTGGATTTTGGTTCCATGTTGTTTGGGTCGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 72 bp | GTTCTCTGTGGTTTCAGGATAGCTAGTAGAAGAAGTTaGCACGGCTTGGGCCTGTATACAGTCCTCATCAGC | + |
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Preference number: 6 (lower is better) Translates to: VLCGFRIASRRS*HGLGLYTVLIS Trigger: GCTGATGAGGACTGTATACAGGCCCAAGCCGTGCAAACTTCTTCTACTAGCTATCCTGAAACCACAGAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029433.9 |
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| CDS CAA 90 bp | GCTGAGATTCCAGGCATGAAAAACCGTCTCCCACGGCCAAGTCATTaGTTTTTCTCTGCTGAATCAGTTCAAAGGGAGTTGATTTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: AEIPGMKNRLPRPSH*FFSAESVQRELIWS Trigger: GGACCAAATCAACTCCCTTTGAACTGATTCAGCAGAGAAAAACAAATGACTTGGCCGTGGGAGACGGTTTTTCATGCCTGGAATCTCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS TCA 72 bp | GAGACTGTAATGCTCATGCAGCTGAGATTCCAGGCATaGAAAACCGTCTCCCACGGCCAAGTCATTTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: ETVMLMQLRFQA*KTVSHGQVICF Trigger: AAAACAAATGACTTGGCCGTGGGAGACGGTTTTTCATGCCTGGAATCTCAGCTGCATGAGCATTACAGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS GCA 72 bp | CTACAGAGTCATGGCTCTTCATTTCAGATGTCCCACTaGATTCTGGTGATGCTCCAAATGTTACCACCAGAG | + |
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Preference number: 6 (lower is better) Translates to: LQSHGSSFQMSH*ILVMLQMLPPE Trigger: CTCTGGTGGTAACATTTGGAGCATCACCAGAATGCAGTGGGACATCTGAAATGAAGAGCCATGACTCTGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 90 bp | AGATGTGGAGTTCTCTGTGGTTTCAGGATAGCTAGTAGAAGAAGTTaGCACGGCTTGGGCCTGTATACAGTCCTCATCAGCAAGAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: RCGVLCGFRIASRRS*HGLGLYTVLISKKE Trigger: TTCTTTCTTGCTGATGAGGACTGTATACAGGCCCAAGCCGTGCAAACTTCTTCTACTAGCTATCCTGAAACCACAGAGAACTCCACATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029433.9 |
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| CDS CAA 72 bp | TGTCGATCTGATTTGGGACTTCGGAGTTTCACATTCTaGCTTGGTGTAAACCCTACAGAGTCATGGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: CRSDLGLRSFTF*LGVNPTESWLF Trigger: GAAGAGCCATGACTCTGTAGGGTTTACACCAAGCAAGAATGTGAAACTCCGAAGTCCCAAATCAGATCGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 72 bp | GGTTTCAGGATAGCTAGTAGAAGAAGTTTGCACGGCTaGGGCCTGTATACAGTCCTCATCAGCAAGAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: GFRIASRRSLHG*GLYTVLISKKE Trigger: TTCTTTCTTGCTGATGAGGACTGTATACAGGCCCAAGCCGTGCAAACTTCTTCTACTAGCTATCCTGAAACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029433.9 |
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| CDS TCA 72 bp | AGAGTCAGCTTCTACCGTGAGGCTTTGTTCAGGAATTaGGCATTGTGCTTGAATCTCTCTTCCAAGGTGATT | + |
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Preference number: 6 (lower is better) Translates to: RVSFYREALFRN*ALCLNLSSKVI Trigger: AATCACCTTGGAAGAGAGATTCAAGCACAATGCTCAATTCCTGAACAAAGCCTCACGGTAGAAGCTGACTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS TCA 72 bp | TTGGTAAATCCAGAGGACAAGAGTCAGCTTCTACCGTaGGGCTTTGTTCAGGAATTGAGCATTGTGCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: LVNPEDKSQLLP*GFVQELSIVLE Trigger: TTCAAGCACAATGCTCAATTCCTGAACAAAGCCTCACGGTAGAAGCTGACTCTTGTCCTCTGGATTTACCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CCA 72 bp | TTCACATTCTTGCTTGGTGTAAACCCTACAGAGTCATaGCTCTTCATTTCAGATGTCCCACTGCATTCTGGT | + |
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Preference number: 6 (lower is better) Translates to: FTFLLGVNPTES*LFISDVPLHSG Trigger: ACCAGAATGCAGTGGGACATCTGAAATGAAGAGCCATGACTCTGTAGGGTTTACACCAAGCAAGAATGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 72 bp | TTCAGCTTCAGAAATTCACTGGCAAACTCCTCACTGTaGAGTTTCTTTTTCTGGGCTTCTTTCAGTAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: FSFRNSLANSSL*SFFFWASFSSC Trigger: GCAACTACTGAAAGAAGCCCAGAAAAAGAAACTCAACAGTGAGGAGTTTGCCAGTGAATTTCTGAAGCTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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| CDS CAA 90 bp | GATTGCCTTTTCAGCTTCAGAAATTCACTGGCAAACTCCTCACTGTaGAGTTTCTTTTTCTGGGCTTCTTTCAGTAGTTGCTGCAGAATT | + |
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Preference number: 6 (lower is better) Translates to: DCLFSFRNSLANSSL*SFFFWASFSSCCRI Trigger: AATTCTGCAGCAACTACTGAAAGAAGCCCAGAAAAAGAAACTCAACAGTGAGGAGTTTGCCAGTGAATTTCTGAAGCTGAAAAGGCAATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029433.9 ENSMUST00000146071.8 |
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