Pregenerated sensors for PTPN20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021940Ensembl transcript IDs: ENSMUST00000022508.8, ENSMUST00000226512.2, ENSMUST00000227887.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGCTACCTTCAGGGACTTTCAGAGAGAAAAATCAGAAGGCAGACTaGACGGCCCGCAGACGCTTCAGCACGGCTCAGGCTCCAAGCTGC | + |
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Preference number: 1 (lower is better) Translates to: VLPSGTFREKNQKAD*TARRRFSTAQAPSC Trigger: GCAGCTTGGAGCCTGAGCCGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAAAGTCCCTGAAGGTAGCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR GCA 90 bp | GTTCAGGGGATAGTAAGGAGGGGCACTAGTCACCTACAAGGTGCTTaGCAGGGCAGCCGACAAGGGTCTGACTGCTCCTCCAGGAAGGTA | + |
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Preference number: 1 (lower is better) Translates to: VQGIVRRGTSHLQGA*QGSRQGSDCSSRKV Trigger: TACCTTCCTGGAGGAGCAGTCAGACCCTTGTCGGCTGCCCTGGCAAGCACCTTGTAGGTGACTAGTGCCCCTCCTTACTATCCCCTGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR GCA 90 bp | CTCTGTGTTTGTGAGTCGGCTCTCTTGGTTAACCTGTTTGCAGGATaGCACACAGGCTTCTCACTGGGAGATGAAGGGGCAGCACAGTTG | + |
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Preference number: 1 (lower is better) Translates to: LCVCESALLVNLFAG*HTGFSLGDEGAAQL Trigger: CAACTGTGCTGCCCCTTCATCTCCCAGTGAGAAGCCTGTGTGGCATCCTGCAAACAGGTTAACCAAGAGAGCCGACTCACAAACACAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR GCA 90 bp | ACATGGAAAAGTATGTTAACTGTGGGGCAGGGCAGGAGAGAAGTCTaGCTGGGCCCGGCAAACATTTCCACTGAATTTACAGATGGATGT | + |
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Preference number: 1 (lower is better) Translates to: TWKSMLTVGQGRREV*LGPANISTEFTDGC Trigger: ACATCCATCTGTAAATTCAGTGGAAATGTTTGCCGGGCCCAGGCAGACTTCTCTCCTGCCCTGCCCCACAGTTAACATACTTTTCCATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR CCA 90 bp | GTAGAAGGCATGGAGGGTATTTTGCTCTTGTTCAGAAAGATCAAGTaGAAACAGTTCACTCTGTGCCCAGTAGTGCTACCTTCAGGGACT | + |
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Preference number: 1 (lower is better) Translates to: VEGMEGILLLFRKIK*KQFTLCPVVLPSGT Trigger: AGTCCCTGAAGGTAGCACTACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAACAAGAGCAAAATACCCTCCATGCCTTCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR CCA 90 bp | GAAGAACTTCAAGCACAATTTCATAACAAAACTGGTACTGCTCCTTaGTTTGAATCATGCCACAGCGCTGCTTTCTCATCTGGGTCACTA | + |
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Preference number: 1 (lower is better) Translates to: EELQAQFHNKTGTAP*FESCHSAAFSSGSL Trigger: TAGTGACCCAGATGAGAAAGCAGCGCTGTGGCATGATTCAAACCAAGGAGCAGTACCAGTTTTGTTATGAAATTGTGCTTGAAGTTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR GCA 90 bp | ATTTTGCTCTTGTTCAGAAAGATCAAGTGGAAACAGTTCACTCTGTaGCCAGTAGTGCTACCTTCAGGGACTTTCAGAGAGAAAAATCAG | + |
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Preference number: 1 (lower is better) Translates to: ILLLFRKIKWKQFTL*PVVLPSGTFREKNQ Trigger: CTGATTTTTCTCTCTGAAAGTCCCTGAAGGTAGCACTACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAACAAGAGCAAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR TCA 90 bp | CTCGGTATCTGTTCTTATCTCTGTTCTGTAGTGTATTCCCAGAATTaGAGTCATCAGGCAGAGTCATTTGTTCTAACTCGGATGATATCA | + |
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Preference number: 1 (lower is better) Translates to: LGICSYLCSVVYSQN*SHQAESFVLTRMIS Trigger: TGATATCATCCGAGTTAGAACAAATGACTCTGCCTGATGACTTCAATTCTGGGAATACACTACAGAACAGAGATAAGAACAGATACCGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226512.2 ENSMUST00000227887.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGGCAGGGCAGGAGAGAAGTCTGCCTGGGCCCGGCAAACATTTCCACTGAATCACGTGTCTCCAAAATaGCCACAAGAGGGCAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: WGRAGEKSAWARQTFPLNHVSPK*PQEGSL Trigger: CAGACTGCCCTCTTGTGGTCATTTTGGAGACACGTG...ATTCAGTGGAAATGTTTGCCGGGCCCAGGCAGACTTCTCTCCTGCCCTGCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR-3UTR TCA 90 bp | GACTTTCAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCAGCAGCCGACAAGGGTCTaGCTGCTCCTCCAGGAAGGT | + |
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Preference number: 2 (lower is better) Translates to: DFQREKSEGRLHGPQTLQQPTRV*LLLQEG Trigger: ACCTTCCTGGAGGAGCAGTCAGACCCTTGTCGGCTG...CTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAAAGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR-3UTR CCA 90 bp | GGTGCTTGCCAGGGCAGCCGACAAGGGTCTGACTGCTCCTCCAGGAAGGTAGCTGGCACTCTGGGACCATaGAAGTATAAGACACAAAAC | + |
|
Preference number: 2 (lower is better) Translates to: GACQGSRQGSDCSSRKVAGTLGP*KYKTQN Trigger: GTTTTGTGTCTTATACTTCCATGGTCCCAGAGTGCC...AGCTACCTTCCTGGAGGAGCAGTCAGACCCTTGTCGGCTGCCCTGGCAAGCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR CAA 90 bp | CCTTTGAGAGCCTACTACTACCAGAAAGCACTGGGGAGACAGTCTTaGACGGCCCTGCAGTCTCTGAATCCATACTGTTCCACCTGTTTC | + |
|
Preference number: 2 (lower is better) Translates to: PLRAYYYQKALGRQS*TALQSLNPYCSTCF Trigger: GAAACAGGTGGAACAGTATGGATTCAGAGACTGCAGGGCCGTCAAAGACTGTCTCCCCAGTGCTTTCTGGTAGTAGTAGGCTCTCAAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227887.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCAGCACGGCTTCAGAAAGATCAAGTaGAAACAGTTCACTCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: QREKSEGRLHGPQTLQHGFRKIK*KQFTLC Trigger: GCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAA...GCCGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR-3UTR TCA 90 bp | CAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCAGCACGGCAACGGACATATTTTATaGAAAAATCTGCTGAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: QREKSEGRLHGPQTLQHGNGHIL*KNLLRQ Trigger: CTGCCTCAGCAGATTTTTTCATAAAATATGTCCGTT...GCCGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR-3UTR TCA 90 bp | CTTCAGGGACTTTCAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGGCAAACATTTCCACTaGATTTACAGATGGATGTCT | + |
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Preference number: 2 (lower is better) Translates to: LQGLSERKIRRQTARPADGKHFH*IYRWMS Trigger: AGACATCCATCTGTAAATTCAGTGGAAATGTTTGCC...GTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAAAGTCCCTGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR CAA 90 bp | CCAACTGAGTTAGCTCCTTTTCAGAGACAGATGTTTCAGTGTCCTTaGAGAGCCTACTACTACCAGAAAGCACTGGGGAGACAGTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: PTELAPFQRQMFQCP*RAYYYQKALGRQSL Trigger: CAAAGACTGTCTCCCCAGTGCTTTCTGGTAGTAGTAGGCTCTCAAAGGACACTGAAACATCTGTCTCTGAAAAGGAGCTAACTCAGTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227887.2 |
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| 3UTR-3UTR GCA 90 bp | TTCAGAAAGATCAAGTGGAAACAGTTCACTCTGTGCCCAGTAGTGCTACCTTCAAACCTGTTTGCAGGATaGCACACAGGCTTCTCACTG | + |
|
Preference number: 2 (lower is better) Translates to: FRKIKWKQFTLCPVVLPSNLFAG*HTGFSL Trigger: CAGTGAGAAGCCTGTGTGGCATCCTGCAAACAGGTT...TGAAGGTAGCACTACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR CAA 90 bp | CATGCAACTTCCGTTTCCGTAGAAGGCATGGAGGGTATTTTGCTCTaGTTCAGAAAGATCAAGTGGAAACAGTTCACTCTGTGCCCAGTA | + |
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Preference number: 2 (lower is better) Translates to: HATSVSVEGMEGILL*FRKIKWKQFTLCPV Trigger: TACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAACAAGAGCAAAATACCCTCCATGCCTTCTACGGAAACGGAAGTTGCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR-3UTR GCA 90 bp | TTCAGAAAGATCAAGTGGAAACAGTTCACTCTGTGCCCAGTAGTGCTACCTTCAGCGGAGGTTGTTTCATaGAACTTCCGTTTCCGTAGA | + |
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Preference number: 2 (lower is better) Translates to: FRKIKWKQFTLCPVVLPSAEVVS*NFRFRR Trigger: TCTACGGAAACGGAAGTTGCATGAAACAACCTCCGC...TGAAGGTAGCACTACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR CAA 90 bp | TTTATTAAGCTCTGTAATACCACAAACCAGACAGCCAAGCGGAGGTaGTTTCATGCAACTTCCGTTTCCGTAGAAGGCATGGAGGGTATT | + |
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Preference number: 2 (lower is better) Translates to: FIKLCNTTNQTAKRR*FHATSVSVEGMEGI Trigger: AATACCCTCCATGCCTTCTACGGAAACGGAAGTTGCATGAAACAACCTCCGCTTGGCTGTCTGGTTTGTGGTATTACAGAGCTTAATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR-3UTR GCA 90 bp | CTGGGTCACTATGTTCATAATGTCAAAAGAGTAGTTCTTCTCGATGGCAGAGAAGCGGAGGTTGTTTCATaGAACTTCCGTTTCCGTAGA | + |
|
Preference number: 2 (lower is better) Translates to: LGHYVHNVKRVVLLDGREAEVVS*NFRFRR Trigger: TCTACGGAAACGGAAGTTGCATGAAACAACCTCCGC...TTCTCTGCCATCGAGAAGAACTACTCTTTTGACATTATGAACATAGTGACCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGGTCACTATGTTCATAATGTCAAAAGAGTAGTTCTTCTCGATGGCAGAGAATTCAGAAAGATCAAGTaGAAACAGTTCACTCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: LGHYVHNVKRVVLLDGREFRKIK*KQFTLC Trigger: GCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAA...TTCTCTGCCATCGAGAAGAACTACTCTTTTGACATTATGAACATAGTGACCCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR GCA 72 bp | TCAGGGACTTTCAGAGAGAAAAATCAGAAGGCAGACTaGACGGCCCGCAGACGCTTCAGCACGGCTCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: SGTFREKNQKAD*TARRRFSTAQA Trigger: AGCCTGAGCCGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAAAGTCCCTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR GCA 72 bp | TGTGAGTCGGCTCTCTTGGTTAACCTGTTTGCAGGATaGCACACAGGCTTCTCACTGGGAGATGAAGGGGCA | + |
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Preference number: 3 (lower is better) Translates to: CESALLVNLFAG*HTGFSLGDEGA Trigger: TGCCCCTTCATCTCCCAGTGAGAAGCCTGTGTGGCATCCTGCAAACAGGTTAACCAAGAGAGCCGACTCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR-3UTR CAA 90 bp | CAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCAGCACGGCGAGGGTATTTTGCTCTaGTTCAGAAAGATCAAGTGG | + |
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Preference number: 3 (lower is better) Translates to: QREKSEGRLHGPQTLQHGEGILL*FRKIKW Trigger: CCACTTGATCTTTCTGAACAAGAGCAAAATACCCTC...GCCGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR-3UTR CAA 90 bp | CAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCAGCACGGCCAAGTGTTTTACACATaGGCTCTTTCCTGTCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: QREKSEGRLHGPQTLQHGQVFYT*ALSCLC Trigger: ACAGAGACAGGAAAGAGCCAATGTGTAAAACACTTG...GCCGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR GCA 72 bp | AGTATGTTAACTGTGGGGCAGGGCAGGAGAGAAGTCTaGCTGGGCCCGGCAAACATTTCCACTGAATTTACA | + |
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Preference number: 3 (lower is better) Translates to: SMLTVGQGRREV*LGPANISTEFT Trigger: TGTAAATTCAGTGGAAATGTTTGCCGGGCCCAGGCAGACTTCTCTCCTGCCCTGCCCCACAGTTAACATACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR-3UTR CAA 90 bp | CTTCAGGGACTTTCAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACAGTGTATTCCCAGAATaGAAGTCATCAGGCAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: LQGLSERKIRRQTARPADSVFPE*KSSGRV Trigger: GACTCTGCCTGATGACTTCAATTCTGGGAATACACT...GTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAAAGTCCCTGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR-3UTR CAA 90 bp | CTTCAGGGACTTTCAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACCTAATTAGAGTCCTTTaGAGTTATTCGGTTACCAGC | + |
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Preference number: 3 (lower is better) Translates to: LQGLSERKIRRQTARPADLIRVL*SYSVTS Trigger: GCTGGTAACCGAATAACTCAAAAGGACTCTAATTAG...GTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAAAGTCCCTGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR GCA 72 bp | TTGTTCAGAAAGATCAAGTGGAAACAGTTCACTCTGTaGCCAGTAGTGCTACCTTCAGGGACTTTCAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: LFRKIKWKQFTL*PVVLPSGTFRE Trigger: CTCTCTGAAAGTCCCTGAAGGTAGCACTACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR GCA 72 bp | CATAACAAAACTGGTACTGCTCCTTGGTTTGAATCATaGCACAGCGCTGCTTTCTCATCTGGGTCACTATGT | + |
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Preference number: 3 (lower is better) Translates to: HNKTGTAPWFES*HSAAFSSGSLC Trigger: ACATAGTGACCCAGATGAGAAAGCAGCGCTGTGGCATGATTCAAACCAAGGAGCAGTACCAGTTTTGTTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR CCA 72 bp | ATGGAGGGTATTTTGCTCTTGTTCAGAAAGATCAAGTaGAAACAGTTCACTCTGTGCCCAGTAGTGCTACCT | + |
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Preference number: 3 (lower is better) Translates to: MEGILLLFRKIK*KQFTLCPVVLP Trigger: AGGTAGCACTACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAACAAGAGCAAAATACCCTCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR CCA 72 bp | GAAGGTAGCTCTTCCTTCAAAATCCCTAGGGCACTCTaGGACCATGGAAGTATAAGACACAAAACCCATTTT | + |
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Preference number: 3 (lower is better) Translates to: EGSSSFKIPRAL*DHGSIRHKTHF Trigger: AAAATGGGTTTTGTGTCTTATACTTCCATGGTCCCAGAGTGCCCTAGGGATTTTGAAGGAAGAGCTACCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR CCA 72 bp | CAAGCACAATTTCATAACAAAACTGGTACTGCTCCTTaGTTTGAATCATGCCACAGCGCTGCTTTCTCATCT | + |
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Preference number: 3 (lower is better) Translates to: QAQFHNKTGTAP*FESCHSAAFSS Trigger: AGATGAGAAAGCAGCGCTGTGGCATGATTCAAACCAAGGAGCAGTACCAGTTTTGTTATGAAATTGTGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| 3UTR TCA 72 bp | TGTTCTTATCTCTGTTCTGTAGTGTATTCCCAGAATTaGAGTCATCAGGCAGAGTCATTTGTTCTAACTCGG | + |
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Preference number: 3 (lower is better) Translates to: CSYLCSVVYSQN*SHQAESFVLTR Trigger: CCGAGTTAGAACAAATGACTCTGCCTGATGACTTCAATTCTGGGAATACACTACAGAACAGAGATAAGAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226512.2 ENSMUST00000227887.2 |
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| 3UTR-3UTR CAA 90 bp | TGTCTGAGGCTTTTGACCACCTTTCCAAATAAAATCTTATCAAACACATCTAAGGAGGGTATTTTGCTCTaGTTCAGAAAGATCAAGTGG | + |
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Preference number: 3 (lower is better) Translates to: CLRLLTTFPNKILSNTSKEGILL*FRKIKW Trigger: CCACTTGATCTTTCTGAACAAGAGCAAAATACCCTC...CTTAGATGTGTTTGATAAGATTTTATTTGGAAAGGTGGTCAAAAGCCTCAGACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR TCA 90 bp | AGAGGGCAGTCTGTGAGCCTGCAGTTTACTGCCCCCATGTTCTCCCAGAGTAGGACACCAGCACTGCAGTaGACAAGGAGGGGTCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: RGQSVSLQFTAPMFSQSRTPALQ*TRRGPV Trigger: TACAGGACCCCTCCTTGTTCACTGCAGTGCTGGTGT...CCTACTCTGGGAGAACATGGGGGCAGTAAACTGCAGGCTCACAGACTGCCCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR TCA 90 bp | GGTGCTTGCCAGGGCAGCCGACAAGGGTCTGACTGCTCCTCCAGGAAGGTAGCTTGTTTCAGTGTCCTTTaGGAGCCTACTACTACCAGA | + |
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Preference number: 4 (lower is better) Translates to: GACQGSRQGSDCSSRKVACFSVL*EPTTTR Trigger: TCTGGTAGTAGTAGGCTCTCAAAGGACACTGAAACA...AGCTACCTTCCTGGAGGAGCAGTCAGACCCTTGTCGGCTGCCCTGGCAAGCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR TCA 90 bp | GCTTGCCAGGGCAGCCGACAAGGGTCTGACTGCTCCTCCAGGAAGGTAGCTCTTTCTGAGAATGACAGGTaGTGGGAGGGTTTTACATTC | + |
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Preference number: 4 (lower is better) Translates to: ACQGSRQGSDCSSRKVALSENDR*WEGFTF Trigger: GAATGTAAAACCCTCCCATCACCTGTCATTCTCAGA...AAGAGCTACCTTCCTGGAGGAGCAGTCAGACCCTTGTCGGCTGCCCTGGCAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR CCA 90 bp | GCTTGCCAGGGCAGCCGACAAGGGTCTGACTGCTCCTCCAGGAAGGTAGCTCTTGTCTTCTATAGTTTCTaGCAATGGTCCTTGAGTGGC | + |
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Preference number: 4 (lower is better) Translates to: ACQGSRQGSDCSSRKVALVFYSF*QWSLSG Trigger: GCCACTCAAGGACCATTGCCAGAAACTATAGAAGAC...AAGAGCTACCTTCCTGGAGGAGCAGTCAGACCCTTGTCGGCTGCCCTGGCAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR TCA 90 bp | GGACTTTCAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCATACTGCTCCTTGGTTTaGATCATGCCACAGCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: GLSERKIRRQTARPADASYCSLV*IMPQRC Trigger: GCAGCGCTGTGGCATGATTCAAACCAAGGAGCAGTA...TGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAAAGTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR CAA 72 bp | GCCTACTACTACCAGAAAGCACTGGGGAGACAGTCTTaGACGGCCCTGCAGTCTCTGAATCCATACTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: AYYYQKALGRQS*TALQSLNPYCS Trigger: GGAACAGTATGGATTCAGAGACTGCAGGGCCGTCAAAGACTGTCTCCCCAGTGCTTTCTGGTAGTAGTAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227887.2 |
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| CDS-3UTR TCA 90 bp | GATGCCACACAGGCTTCTCACTGGGAGATGAAGGGGCAGCACAGTTGCATGCTCTCTGAGAATGACAGGTaGTGGGAGGGTTTTACATTC | + |
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Preference number: 4 (lower is better) Translates to: DATQASHWEMKGQHSCMLSENDR*WEGFTF Trigger: GAATGTAAAACCCTCCCATCACCTGTCATTCTCAGA...GAGCATGCAACTGTGCTGCCCCTTCATCTCCCAGTGAGAAGCCTGTGTGGCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| CDS-3UTR GCA 90 bp | AGAGGGCAGTCTGTGAGCCTGCAGTTTACTGCCCCCATGTTCTCCCAGAGTAGGATGAAGGCAAAGAGTTaGGGAGATTCAGGTTACCTG | + |
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Preference number: 4 (lower is better) Translates to: RGQSVSLQFTAPMFSQSRMKAKS*GDSGYL Trigger: CAGGTAACCTGAATCTCCGCAACTCTTTGCCTTCAT...CCTACTCTGGGAGAACATGGGGGCAGTAAACTGCAGGCTCACAGACTGCCCTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR TCA 90 bp | GGCAGGGCAGGAGAGAAGTCTGCCTGGGCCCGGCAAACATTTCCACTGAATTTAGTGTATTCCCAGAATTaGAGTCATCAGGCAGAGTCA | + |
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Preference number: 4 (lower is better) Translates to: GRAGEKSAWARQTFPLNLVYSQN*SHQAES Trigger: TGACTCTGCCTGATGACTTCAATTCTGGGAATACAC...TAAATTCAGTGGAAATGTTTGCCGGGCCCAGGCAGACTTCTCTCCTGCCCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR GCA 90 bp | TTCAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCAGCACGATGAAGGCAAAGAGTTaGGGAGATTCAGGTTACCTG | + |
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Preference number: 4 (lower is better) Translates to: FREKNQKADCTARRRFSTMKAKS*GDSGYL Trigger: CAGGTAACCTGAATCTCCGCAACTCTTTGCCTTCAT...CGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| CDS-3UTR GCA 90 bp | CACTCTGTGCCCAGTAGTGCTACCTTCAGGGACTTTCAGAGAGAAAAATCAGAAGGCCTACACCAGCACTaGAGTGAACAAGGAGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: HSVPSSATFRDFQREKSEGLHQH*SEQGGV Trigger: GACCCCTCCTTGTTCACTGCAGTGCTGGTGTAGGCC...TTCTGATTTTTCTCTCTGAAAGTCCCTGAAGGTAGCACTACTGGGCACAGAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR CCA 90 bp | AGAGGGCAGTCTGTGAGCCTGCAGTTTACTGCCCCCATGTTCTCCCAGAGTAGGCGCTGCTTTCTCATCTaGGTCACTATGTTCATAATG | + |
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Preference number: 4 (lower is better) Translates to: RGQSVSLQFTAPMFSQSRRCFLI*VTMFIM Trigger: CATTATGAACATAGTGACCCAGATGAGAAAGCAGCG...CCTACTCTGGGAGAACATGGGGGCAGTAAACTGCAGGCTCACAGACTGCCCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR CAA 72 bp | TCTGTGTTTGTGAGTCGGCTCTCTTGGTTAACCTGTTaGCAGGATGCCACACAGGCTTCTCACTGGGAGATG | + |
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Preference number: 4 (lower is better) Translates to: SVFVSRLSWLTC*QDATQASHWEM Trigger: CATCTCCCAGTGAGAAGCCTGTGTGGCATCCTGCAAACAGGTTAACCAAGAGAGCCGACTCACAAACACAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| CDS-3UTR CCA 90 bp | CAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCAGCACGGCTATAGTTTCTGGCAATaGTCCTTGAGTGGCAATATA | + |
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Preference number: 4 (lower is better) Translates to: QREKSEGRLHGPQTLQHGYSFWQ*SLSGNI Trigger: TATATTGCCACTCAAGGACCATTGCCAGAAACTATA...GCCGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR CAA 72 bp | ACAGGCTTCTCACTGGGAGATGAAGGGGCAGCACAGTaGCATGCTCTGATGGAAGAATATCTCGGTATCTGT | + |
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Preference number: 4 (lower is better) Translates to: TGFSLGDEGAAQ*HALMEEYLGIC Trigger: ACAGATACCGAGATATTCTTCCATCAGAGCATGCAACTGTGCTGCCCCTTCATCTCCCAGTGAGAAGCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| CDS-3UTR TCA 90 bp | GGCAGGGCAGGAGAGAAGTCTGCCTGGGCCCGGCAAACATTTCCACTGAATTTAGACTTCTTCACAATCTaGAATACTCGAACGGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: GRAGEKSAWARQTFPLNLDFFTI*NTRTVK Trigger: TTTCACCGTTCGAGTATTTCAGATTGTGAAGAAGTC...TAAATTCAGTGGAAATGTTTGCCGGGCCCAGGCAGACTTCTCTCCTGCCCTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR CCA 90 bp | TTCAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCAGCACGACTTTCCAAAGGCTCTaGGTAAACAAGCTCATACTT | + |
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Preference number: 4 (lower is better) Translates to: FREKNQKADCTARRRFSTTFQRL*VNKLIL Trigger: AAGTATGAGCTTGTTTACCCAGAGCCTTTGGAAAGT...CGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| CDS-3UTR GCA 90 bp | TGTCCTTTGAGAGCCTACTACTACCAGAAAGCACTGGGGAGACAGTCTTTGACGATGAAGGCAAAGAGTTaGGGAGATTCAGGTTACCTG | + |
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Preference number: 4 (lower is better) Translates to: CPLRAYYYQKALGRQSLTMKAKS*GDSGYL Trigger: CAGGTAACCTGAATCTCCGCAACTCTTTGCCTTCAT...CGTCAAAGACTGTCTCCCCAGTGCTTTCTGGTAGTAGTAGGCTCTCAAAGGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227887.2 |
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| 3UTR CAA 72 bp | TTAGCTCCTTTTCAGAGACAGATGTTTCAGTGTCCTTaGAGAGCCTACTACTACCAGAAAGCACTGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: LAPFQRQMFQCP*RAYYYQKALGR Trigger: TCTCCCCAGTGCTTTCTGGTAGTAGTAGGCTCTCAAAGGACACTGAAACATCTGTCTCTGAAAAGGAGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227887.2 |
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| 3UTR CAA 72 bp | TCCGTTTCCGTAGAAGGCATGGAGGGTATTTTGCTCTaGTTCAGAAAGATCAAGTGGAAACAGTTCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: SVSVEGMEGILL*FRKIKWKQFTL Trigger: CAGAGTGAACTGTTTCCACTTGATCTTTCTGAACAAGAGCAAAATACCCTCCATGCCTTCTACGGAAACGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| 3UTR CAA 72 bp | GCAACTTCCGTTTCCGTAGAAGGCATGGAGGGTATTTaGCTCTTGTTCAGAAAGATCAAGTGGAAACAGTTC | + |
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Preference number: 4 (lower is better) Translates to: ATSVSVEGMEGI*LLFRKIKWKQF Trigger: GAACTGTTTCCACTTGATCTTTCTGAACAAGAGCAAAATACCCTCCATGCCTTCTACGGAAACGGAAGTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022508.8 ENSMUST00000226512.2 |
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| CDS-3UTR CCA 90 bp | TTCAGAAAGATCAAGTGGAAACAGTTCACTCTGTGCCCAGTAGTGCTACCTTCAATTGGCTCTTTCCTGTaGACTTCTTCACAATCTGAA | + |
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Preference number: 4 (lower is better) Translates to: FRKIKWKQFTLCPVVLPSIGSFL*TSSQSE Trigger: TTCAGATTGTGAAGAAGTCCACAGGAAAGAGCCAAT...TGAAGGTAGCACTACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR TCA 90 bp | TTGCTCTTGTTCAGAAAGATCAAGTGGAAACAGTTCACTCTGTGCCCAGTAGTGAACGGACATATTTTATaGAAAAATCTGCTGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LLLFRKIKWKQFTLCPVVNGHIL*KNLLRQ Trigger: CTGCCTCAGCAGATTTTTTCATAAAATATGTCCGTT...CACTACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAACAAGAGCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| 3UTR CAA 72 bp | TATATCAAAAGTCAGTCCACCCTAATTAGAGTCCTTTaGAGTTATTCGGTTACCAGCTGGAAGTATAGATTC | + |
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Preference number: 4 (lower is better) Translates to: YIKSQSTLIRVL*SYSVTSWKYRF Trigger: GAATCTATACTTCCAGCTGGTAACCGAATAACTCAAAAGGACTCTAATTAGGGTGGACTGACTTTTGATATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR CCA 90 bp | TGTCTGAGGCTTTTGACCACCTTTCCAAATAAAATCTTATCAAACACATCTAAGACTTTCCAAAGGCTCTaGGTAAACAAGCTCATACTT | + |
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Preference number: 4 (lower is better) Translates to: CLRLLTTFPNKILSNTSKTFQRL*VNKLIL Trigger: AAGTATGAGCTTGTTTACCCAGAGCCTTTGGAAAGT...CTTAGATGTGTTTGATAAGATTTTATTTGGAAAGGTGGTCAAAAGCCTCAGACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR CAA 90 bp | GCTTGCCAGGGCAGCCGACAAGGGTCTGACTGCTCCTCCAGGAAGGTAGCTCTTTCGAACGGTGAAATATaGAGTTACATGAAAGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: ACQGSRQGSDCSSRKVALSNGEI*SYMKGL Trigger: GAGACCTTTCATGTAACTCAATATTTCACCGTTCGA...AAGAGCTACCTTCCTGGAGGAGCAGTCAGACCCTTGTCGGCTGCCCTGGCAAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR CAA 90 bp | TTCAGAGAGAAAAATCAGAAGGCAGACTGCACGGCCCGCAGACGCTTCAGCACGCAAGTGTTTTACACATaGGCTCTTTCCTGTGGACTT | + |
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Preference number: 5 (lower is better) Translates to: FREKNQKADCTARRRFSTQVFYT*ALSCGL Trigger: AAGTCCACAGGAAAGAGCCAATGTGTAAAACACTTG...CGTGCTGAAGCGTCTGCGGGCCGTGCAGTCTGCCTTCTGATTTTTCTCTCTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR CAA 90 bp | TTCAGAAAGATCAAGTGGAAACAGTTCACTCTGTGCCCAGTAGTGCTACCTTCAAGTGTATTCCCAGAATaGAAGTCATCAGGCAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: FRKIKWKQFTLCPVVLPSSVFPE*KSSGRV Trigger: GACTCTGCCTGATGACTTCAATTCTGGGAATACACT...TGAAGGTAGCACTACTGGGCACAGAGTGAACTGTTTCCACTTGATCTTTCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS TCA 90 bp | CTCGGTATCTGTTCTTATCTCTGTTCTGTAGTGTATTCCCAGAATTaGAGTCATCAGGCAGAGTCATTTGTTCTAACTCCAAAAACTCAC | + |
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Preference number: 5 (lower is better) Translates to: LGICSYLCSVVYSQN*SHQAESFVLTPKTH Trigger: GTGAGTTTTTGGAGTTAGAACAAATGACTCTGCCTGATGACTTCAATTCTGGGAATACACTACAGAACAGAGATAAGAACAGATACCGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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| CDS-3UTR CAA 90 bp | CTGGGTCACTATGTTCATAATGTCAAAAGAGTAGTTCTTCTCGATGGCAGAGAATATAAATATCATCCTTaGAGAGCCTACTACTACCAG | + |
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Preference number: 5 (lower is better) Translates to: LGHYVHNVKRVVLLDGREYKYHP*RAYYYQ Trigger: CTGGTAGTAGTAGGCTCTCAAAGGATGATATTTATA...TTCTCTGCCATCGAGAAGAACTACTCTTTTGACATTATGAACATAGTGACCCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226512.2 |
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| CDS TCA 72 bp | TGTTCTTATCTCTGTTCTGTAGTGTATTCCCAGAATTaGAGTCATCAGGCAGAGTCATTTGTTCTAACTCCA | + |
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Preference number: 6 (lower is better) Translates to: CSYLCSVVYSQN*SHQAESFVLTP Trigger: TGGAGTTAGAACAAATGACTCTGCCTGATGACTTCAATTCTGGGAATACACTACAGAACAGAGATAAGAACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022508.8 |
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