RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTPN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024539

Ensembl transcript IDs: ENSMUST00000120934.8, ENSMUST00000122412.2

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCATTGACAGTCTGGGTCTCAGAGGAACCTGCAGTGATGAGTCCTaGGATGCTGGGCTTGTGACTGTAATATCCCTTATCTGGCTGATG +
Preference number: 1 (lower is better)
Translates to: AIDSLGLRGTCSDES*DAGLVTVISLIWLM
Trigger: CATCAGCCAGATAAGGGATATTACAGTCACAAGCCCAGCATCTCAGGACTCATCACTGCAGGTTCCTCTGAGACCCAGACTGTCAATGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR TCA 90 bp GCTGTAAGAAGTAACAGTATCCAACAAGCATGCTTGTCTTTATTGTaGGCCATTGACAGTCTGGGTCTCAGAGGAACCTGCAGTGATGAG +
Preference number: 1 (lower is better)
Translates to: AVRSNSIQQACLSLL*AIDSLGLRGTCSDE
Trigger: CTCATCACTGCAGGTTCCTCTGAGACCCAGACTGTCAATGGCTCACAATAAAGACAAGCATGCTTGTTGGATACTGTTACTTCTTACAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR TCA 90 bp GTAGTTGAAGCTGGCCTTGAACTTGTGAGCCTTCTGCCTCTATCTCCCAAAAGCCTTGTTTTAGCTTCCTaGGCACTGTGTGTGCTACCA +
Preference number: 2 (lower is better)
Translates to: VVEAGLELVSLLPLSPKSLVLAS*ALCVLP
Trigger: TGGTAGCACACACAGTGCTCAGGAAGCTAAAACAAG...GCTTTTGGGAGATAGAGGCAGAAGGCTCACAAGTTCAAGGCCAGCTTCAACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR TCA 90 bp GTAGTTGAAGCTGGCCTTGAACTTGTGAGCCTTCTGCCTCTATCTCCCAAAAGCTGCTTGTCTTTATTGTaGGCCATTGACAGTCTGGGT +
Preference number: 2 (lower is better)
Translates to: VVEAGLELVSLLPLSPKSCLSLL*AIDSLG
Trigger: ACCCAGACTGTCAATGGCTCACAATAAAGACAAGCA...GCTTTTGGGAGATAGAGGCAGAAGGCTCACAAGTTCAAGGCCAGCTTCAACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR CAA 90 bp GAAGTAACAGTATCCAACAAGCATGCTTGTCTTTATTGTGAGCCATaGACAGTCTGGGTCTCAGAGGAACCTGCAGTGATGAGTCCTGAG +
Preference number: 2 (lower is better)
Translates to: EVTVSNKHACLYCEP*TVWVSEEPAVMSPE
Trigger: CTCAGGACTCATCACTGCAGGTTCCTCTGAGACCCAGACTGTCAATGGCTCACAATAAAGACAAGCATGCTTGTTGGATACTGTTACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR CCA 90 bp GGTGTGAACGCAGCTGTAAGAAGTAACAGTATCCAACAAGCATGCTTGTCTTTAGAGCCATTGACAGTCTaGGTCTCAGAGGAACCTGCA +
Preference number: 2 (lower is better)
Translates to: GVNAAVRSNSIQQACLSLEPLTV*VSEEPA
Trigger: TGCAGGTTCCTCTGAGACCCAGACTGTCAATGGCTC...TAAAGACAAGCATGCTTGTTGGATACTGTTACTTCTTACAGCTGCGTTCACACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR GCA 90 bp GCTAGCTATGTAGTTGAAGCTGGCCTTGAACTTGTGAGCCTTCTGCCTCTATCTCCTCTATCAAACGTCTaGTTAGGAAAGGGAAAATGT +
Preference number: 2 (lower is better)
Translates to: ASYVVEAGLELVSLLPLSPLSNV*LGKGKC
Trigger: ACATTTTCCCTTTCCTAAGCAGACGTTTGATAGAGG...AGATAGAGGCAGAAGGCTCACAAGTTCAAGGCCAGCTTCAACTACATAGCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR CCA 90 bp GCTAGCTATGTAGTTGAAGCTGGCCTTGAACTTGTGAGCCTTCTGCCTCTATCTTCGATTTCTTATTCTTaGTGTTGTCTGATCTCTCCT +
Preference number: 2 (lower is better)
Translates to: ASYVVEAGLELVSLLPLSSISYS*CCLISP
Trigger: AGGAGAGATCAGACAACACCAAGAATAAGAAATCGA...AGATAGAGGCAGAAGGCTCACAAGTTCAAGGCCAGCTTCAACTACATAGCTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR TCA 90 bp ATTTTTCTCTTATCTTTAAAGATAGGACCTTGCTATGTAGTTTTGGCTGGCTTCTGCAGTGATGAGTCCTaGGATGCTGGGCTTGTGACT +
Preference number: 2 (lower is better)
Translates to: IFLLSLKIGPCYVVLAGFCSDES*DAGLVT
Trigger: AGTCACAAGCCCAGCATCTCAGGACTCATCACTGCA...GAAGCCAGCCAAAACTACATAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR GCA 90 bp ATTTTTCTCTTATCTTTAAAGATAGGACCTTGCTATGTAGTTTTGGCTGGCTTCCCTGAGCACTGTGTGTaGTACCACATCCTGCAGAAA +
Preference number: 2 (lower is better)
Translates to: IFLLSLKIGPCYVVLAGFPEHCV*YHILQK
Trigger: TTTCTGCAGGATGTGGTAGCACACACAGTGCTCAGG...GAAGCCAGCCAAAACTACATAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR CCA 90 bp TCTCTCCTCCACCACCTCTATTTTTCTCTTATCTTTAAAGATAGGACCTTGCTACCAAAAGCCAATCCTTaGGATAAAGGATTTCTCAAT +
Preference number: 2 (lower is better)
Translates to: SLLHHLYFSLIFKDRTLLPKANP*DKGFLN
Trigger: ATTGAGAAATCCTTTATCCCAAGGATTGGCTTTTGG...TAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAATAGAGGTGGTGGAGGAGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR TCA 72 bp TGGCTTCAAACCATTGAGCCTCTTGTTTTAGCTTCCTaGGCACTGTGTGTGCTACCACATCCTGCAGAAACC +
Preference number: 3 (lower is better)
Translates to: WLQTIEPLVLAS*ALCVLPHPAET
Trigger: GGTTTCTGCAGGATGTGGTAGCACACACAGTGCTCAGGAAGCTAAAACAAGAGGCTCAATGGTTTGAAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR CAA 90 bp GCTAGCTATGTAGTTGAAGCTGGCCTTGAACTTGTGAGCCTTCTGCCTCTATCTTTCTTATTCTTGGTGTaGTCTGATCTCTCCTCCACC +
Preference number: 3 (lower is better)
Translates to: ASYVVEAGLELVSLLPLSFLFLV*SDLSST
Trigger: GGTGGAGGAGAGATCAGACAACACCAAGAATAAGAA...AGATAGAGGCAGAAGGCTCACAAGTTCAAGGCCAGCTTCAACTACATAGCTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR TCA 72 bp AGTAACAGTATCCAACAAGCATGCTTGTCTTTATTGTaGGCCATTGACAGTCTGGGTCTCAGAGGAACCTGC +
Preference number: 3 (lower is better)
Translates to: SNSIQQACLSLL*AIDSLGLRGTC
Trigger: GCAGGTTCCTCTGAGACCCAGACTGTCAATGGCTCACAATAAAGACAAGCATGCTTGTTGGATACTGTTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR TCA 72 bp TGTGAGCCTTCTGCCTCTATCTCCCAAAAGCTGAGATaGCAGGTTTGTCCATTAAATATGGCTAAGAATCGA +
Preference number: 3 (lower is better)
Translates to: CEPSASISQKLR*QVCPLNMAKNR
Trigger: TCGATTCTTAGCCATATTTAATGGACAAACCTGTCATCTCAGCTTTTGGGAGATAGAGGCAGAAGGCTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR CCA 72 bp ATCTTTAAAGATAGGACCTTGCTATGTAGTTTTGGCTaGCTTCAAACCATTGAGCCTCTTGTTTTAGCTTCC +
Preference number: 3 (lower is better)
Translates to: IFKDRTLLCSFG*LQTIEPLVLAS
Trigger: GGAAGCTAAAACAAGAGGCTCAATGGTTTGAAGCCAGCCAAAACTACATAGCAAGGTCCTATCTTTAAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR GCA 72 bp ACCTCTATTTTTCTCTTATCTTTAAAGATAGGACCTTaGTATGTAGTTTTGGCTGGCTTCAAACCATTGAGC +
Preference number: 3 (lower is better)
Translates to: TSIFLLSLKIGP*YVVLAGFKPLS
Trigger: GCTCAATGGTTTGAAGCCAGCCAAAACTACATAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAATAGAGGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR-3UTR CAA 90 bp ATTTTTCTCTTATCTTTAAAGATAGGACCTTGCTATGTAGTTTTGGCTGGCTTCTGTAGTAGTCTTAGCTaGCTTATAGTTTCAACTGCC +
Preference number: 3 (lower is better)
Translates to: IFLLSLKIGPCYVVLAGFCSSLS*LIVSTA
Trigger: GGCAGTTGAAACTATAAGCAAGCTAAGACTACTACA...GAAGCCAGCCAAAACTACATAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR GCA 90 bp GTAGTTGAAGCTGGCCTTGAACTTGTGAGCCTTCTGCCTCTATCTCCCAAAAGCCTACAAGAGAGAAGGTaGCAGAGCGCCCGATGCCCG +
Preference number: 4 (lower is better)
Translates to: VVEAGLELVSLLPLSPKSLQERR*QSARCP
Trigger: CGGGCATCGGGCGCTCTGGCACCTTCTCTCTTGTAG...GCTTTTGGGAGATAGAGGCAGAAGGCTCACAAGTTCAAGGCCAGCTTCAACTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR TCA 90 bp ATTAATGCACCACGGTCAGCTACTAGTGCAGAAAGGTGCTGGGTAAAACTATTAGGCTGCCAGCGACACTaGGCATCCAGTTCCTCGAAC +
Preference number: 4 (lower is better)
Translates to: INAPRSATSAERCWVKLLGCQRH*ASSSSN
Trigger: GTTCGAGGAACTGGATGCTCAGTGTCGCTGGCAGCC...TAATAGTTTTACCCAGCACCTTTCTGCACTAGTAGCTGACCGTGGTGCATTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR GCA 90 bp ATTAATGCACCACGGTCAGCTACTAGTGCAGAAAGGTGCTGGGTAAAACTATTATGCCAGAGCGCCCGATaGCCGCACTGCAATGGATCA +
Preference number: 4 (lower is better)
Translates to: INAPRSATSAERCWVKLLCQSAR*PHCNGS
Trigger: TGATCCATTGCAGTGCGGGCATCGGGCGCTCTGGCA...TAATAGTTTTACCCAGCACCTTTCTGCACTAGTAGCTGACCGTGGTGCATTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR GCA 90 bp GCTAGCTATGTAGTTGAAGCTGGCCTTGAACTTGTGAGCCTTCTGCCTCTATCTGTAGAATGCTCTCACTaGTCTCCTCCACAGTATCCT +
Preference number: 4 (lower is better)
Translates to: ASYVVEAGLELVSLLPLSVECSH*SPPQYP
Trigger: AGGATACTGTGGAGGAGAGCAGTGAGAGCATTCTAC...AGATAGAGGCAGAAGGCTCACAAGTTCAAGGCCAGCTTCAACTACATAGCTAGC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR CCA 90 bp ATTAATGCACCACGGTCAGCTACTAGTGCAGAAAGGTGCTGGGTAAAACTATTAATCACTGCAGGTCCATaGTCAGGGGTCAAACAACCA +
Preference number: 4 (lower is better)
Translates to: INAPRSATSAERCWVKLLITAGP*SGVKQP
Trigger: TGGTTGTTTGACCCCTGACCATGGACCTGCAGTGAT...TAATAGTTTTACCCAGCACCTTTCTGCACTAGTAGCTGACCGTGGTGCATTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR CCA 90 bp TCTCTCCTCCACCACCTCTATTTTTCTCTTATCTTTAAAGATAGGACCTTGCTAATGCCCGCACTGCAATaGATCACTGCAGGTCCATGG +
Preference number: 4 (lower is better)
Translates to: SLLHHLYFSLIFKDRTLLMPALQ*ITAGPW
Trigger: CCATGGACCTGCAGTGATCCATTGCAGTGCGGGCAT...TAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAATAGAGGTGGTGGAGGAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR TCA 90 bp ATTAATGCACCACGGTCAGCTACTAGTGCAGAAAGGTGCTGGGTAAAACTATTAAGTTGGTCCGGTGTCTaGATAAGTCCCATTCGATAC +
Preference number: 4 (lower is better)
Translates to: INAPRSATSAERCWVKLLSWSGV*ISPIRY
Trigger: GTATCGAATGGGACTTATTCAGACACCGGACCAACT...TAATAGTTTTACCCAGCACCTTTCTGCACTAGTAGCTGACCGTGGTGCATTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR TCA 90 bp GGTGTGAACGCAGCTGTAAGAAGTAACAGTATCCAACAAGCATGCTTGTCTTTAAAGCGCCAACCAAAATaGCTGACACAAACCCCATCT +
Preference number: 4 (lower is better)
Translates to: GVNAAVRSNSIQQACLSLKRQPK*LTQTPS
Trigger: AGATGGGGTTTGTGTCAGTCATTTTGGTTGGCGCTT...TAAAGACAAGCATGCTTGTTGGATACTGTTACTTCTTACAGCTGCGTTCACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR CCA 90 bp ATTAATGCACCACGGTCAGCTACTAGTGCAGAAAGGTGCTGGGTAAAACTATTATGGAACCCCAAAATCTaGCCAGGTGGTATAATGGAA +
Preference number: 4 (lower is better)
Translates to: INAPRSATSAERCWVKLLWNPKI*PGGIME
Trigger: TTCCATTATACCACCTGGCCAGATTTTGGGGTTCCA...TAATAGTTTTACCCAGCACCTTTCTGCACTAGTAGCTGACCGTGGTGCATTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR TCA 90 bp TCTCTCCTCCACCACCTCTATTTTTCTCTTATCTTTAAAGATAGGACCTTGCTAGCCAACCAAAATGACTaGCACAAACCCCATCTTAGT +
Preference number: 4 (lower is better)
Translates to: SLLHHLYFSLIFKDRTLLANQND*HKPHLS
Trigger: ACTAAGATGGGGTTTGTGTCAGTCATTTTGGTTGGC...TAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAATAGAGGTGGTGGAGGAGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR CCA 90 bp GGTGTGAACGCAGCTGTAAGAAGTAACAGTATCCAACAAGCATGCTTGTCTTTAACGACTGTGATCATATaGGCTTACATCTCTGTATCT +
Preference number: 4 (lower is better)
Translates to: GVNAAVRSNSIQQACLSLTTVII*AYISVS
Trigger: AGATACAGAGATGTAAGCCCATATGATCACAGTCGT...TAAAGACAAGCATGCTTGTTGGATACTGTTACTTCTTACAGCTGCGTTCACACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR TCA 90 bp TCTCTCCTCCACCACCTCTATTTTTCTCTTATCTTTAAAGATAGGACCTTGCTAAGTTTAACACGACTGTaGTCATATGGGCTTACATCT +
Preference number: 4 (lower is better)
Translates to: SLLHHLYFSLIFKDRTLLSLTRL*SYGLTS
Trigger: AGATGTAAGCCCATATGATCACAGTCGTGTTAAACT...TAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAATAGAGGTGGTGGAGGAGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
3UTR CAA 72 bp CACCTCTATTTTTCTCTTATCTTTAAAGATAGGACCTaGCTATGTAGTTTTGGCTGGCTTCAAACCATTGAG +
Preference number: 4 (lower is better)
Translates to: HLYFSLIFKDRT*LCSFGWLQTIE
Trigger: CTCAATGGTTTGAAGCCAGCCAAAACTACATAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAATAGAGGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS-3UTR CAA 90 bp ATTTTTCTCTTATCTTTAAAGATAGGACCTTGCTATGTAGTTTTGGCTGGCTTCCTCCTTTTGTGTACTTaGCTCCTTCTATTATGGCCA +
Preference number: 5 (lower is better)
Translates to: IFLLSLKIGPCYVVLAGFLLLCT*LLLLWP
Trigger: TGGCCATAATAGAAGGAGCAAAGTACACAAAAGGAG...GAAGCCAGCCAAAACTACATAGCAAGGTCCTATCTTTAAAGATAAGAGAAAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS TCA 72 bp CAGTGTCCAGCCAACCAAAGCGCCAACCAAAATGACTaGCACAAACCCCATCTTAGTGAGAATAGGTTGCCA +
Preference number: 6 (lower is better)
Translates to: QCPANQSANQND*HKPHLSENRLP
Trigger: TGGCAACCTATTCTCACTAAGATGGGGTTTGTGTCAGTCATTTTGGTTGGCGCTTTGGTTGGCTGGACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122412.2
CDS CAA 90 bp GGAAGCCCTGTTAACTTTTCATCTTCTGAACCTATTCTCTTCCCATaGTACTTCTCAACCATCACTCTGTTCTGTATATTTGAATCTCCT +
Preference number: 6 (lower is better)
Translates to: GSPVNFSSSEPILFP*YFSTITLFCIFESP
Trigger: AGGAGATTCAAATATACAGAACAGAGTGATGGTTGAGAAGTACAATGGGAAGAGAATAGGTTCAGAAGATGAAAAGTTAACAGGGCTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120934.8