Pregenerated sensors for PTPN18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026126Ensembl transcript IDs: ENSMUST00000027302.14, ENSMUST00000188972.3, ENSMUST00000190122.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCCACAAGTCCCACTCATACATAACACACTGCACAGCAGTATGGTaGTTCCAGGAGTCCAGCCACCACCGAGTGGCAGGCTATAACTGG | + |
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Preference number: 1 (lower is better) Translates to: AHKSHSYITHCTAVW*FQESSHHRVAGYNW Trigger: CCAGTTATAGCCTGCCACTCGGTGGTGGCTGGACTCCTGGAACCACCATACTGCTGTGCAGTGTGTTATGTATGAGTGGGACTTGTGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| 3UTR-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACCAGCCACCACCGAGTaGCAGGCTATAACTGGCACA | + |
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Preference number: 2 (lower is better) Translates to: LRNFYFESGPQVPLIHNTPATTE*QAITGT Trigger: TGTGCCAGTTATAGCCTGCCACTCGGTGGTGGCTGG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| 3UTR CCA 72 bp | TCCCACTCATACATAACACACTGCACAGCAGTATGGTaGTTCCAGGAGTCCAGCCACCACCGAGTGGCAGGC | + |
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Preference number: 3 (lower is better) Translates to: SHSYITHCTAVW*FQESSHHRVAG Trigger: GCCTGCCACTCGGTGGTGGCTGGACTCCTGGAACCACCATACTGCTGTGCAGTGTGTTATGTATGAGTGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| 3UTR GCA 72 bp | AATCAGGCCCACAAGTCCCACTCATACATAACACACTaGACAGCAGTATGGTGGTTCCAGGAGTCCAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: NQAHKSHSYITH*TAVWWFQESSH Trigger: GTGGCTGGACTCCTGGAACCACCATACTGCTGTGCAGTGTGTTATGTATGAGTGGGACTTGTGGGCCTGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR GCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACACCCGTGTCCACTCTaGTGGAGGATCCCGGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTHPCPL*WRIPGP Trigger: GGGCCCCGGGATCCTCCAGCAGAGTGGACACGGGTG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACTGGTGGCCGGGATGTaGCAGGCAGGGCTGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTLVAGM*QAGLRR Trigger: CCTCCTCAGCCCTGCCTGCCACATCCCGGCCACCAG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAGCACCGAGATGCTCCTaGGAACCCCTCCTGGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTAPRCS*EPLLVA Trigger: GGCCACCAGGAGGGGTTCTCAGGAGCATCTCGGTGC...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAGAGAACCCCTCCTGGTaGCCGGGATGTGGCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTENPSW*PGCGRQ Trigger: CTGCCTGCCACATCCCGGCCACCAGGAGGGGTTCTC...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAGGGCTGAGGAGGTCCTaGGGGAGAAGGCTTCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTGLRRS*GRRLPC Trigger: GCAAGGAAGCCTTCTCCCTCAGGACCTCCTCAGCCC...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR GCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATCCCGGGCCTCCAGCTaGTCCAAGAAGCTCCTCACC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTSRASS*SKKLLT Trigger: GGTGAGGAGCTTCTTGGAGCAGCTGGAGGCCCGGGA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATCTGGTAGTGGGGGCTaGTGTCCTGGAGAGTGCGGG | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTSGSGG*CPGECG Trigger: CCCGCACTCTCCAGGACACCAGCCCCCACTACCAGA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACAGCCAGCACTGCAGTaGACACAGAGGGGTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTQPALQ*TQRGPG Trigger: ACCTGGACCCCTCTGTGTCCACTGCAGTGCTGGCTG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAAGACTTCCAGGCCACTaGGCGGGCCTTAATGTCGCT | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTRLPGH*AGLNVA Trigger: AGCGACATTAAGGCCCGCTCAGTGGCCTGGAAGTCT...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAAAGTCCAACAGTGTGTaGGGCAGGGGTCCTTGCGTC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTKSNSV*GRGPCV Trigger: GACGCAAGGACCCCTGCCTCACACACTGTTGGACTT...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR GCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACTCTGTCTGCACTGCTaGAGGCCGCTGTTTCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTLCLHC*RPLFPH Trigger: ATGCGGAAACAGCGGCCTGCAGCAGTGCAGACAGAG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR GCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATACTGCTCCTCTGTCTaGACTGCTGCAGGCCGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTYCSSV*TAAGRC Trigger: ACAGCGGCCTGCAGCAGTGCAGACAGAGGAGCAGTA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACTGCTGGGAACCCCGTaGTCTGGCCAGGACATATAC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTLLGTP*SGQDIY Trigger: GTATATGTCCTGGCCAGACCACGGGGTTCCCAGCAG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATCTCCTTTGTCAGGGTaGTGCAGAAAGGCCCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTSPLSG*CRKAQP Trigger: AGGCTGGGCCTTTCTGCATCACCCTGACAAAGGAGA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATTCCGATGCGCAAGTTaGAGCCTAGCCCTCCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTFRCAS*SLALQS Trigger: AGACTGGAGGGCTAGGCTTCAACTTGCGCATCGGAA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATTGGGAGGGATTGTCTaGGTCAGCAGCAACTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTLGGIV*VSSNCL Trigger: GAGGCAGTTGCTGCTGACCCAGACAATCCCTCCCAA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACCTCCTCCACCATGGTaGGAATGTGATCAGAACTGC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTPPPPW*ECDQNC Trigger: GCAGTTCTGATCACATTCTCACCATGGTGGAGGAGG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR GCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAGAATGTGATCAGAACTaGTGGGAACCCCGTGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTECDQN*WEPRGL Trigger: CAGACCACGGGGTTCCCAGCAGTTCTGATCACATTC...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACCATGTCCCTCCTCTTaGAGCAGGGAAAGGATGACT | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTPCPSS*SRERMT Trigger: AGTCATCCTTTCCCTGCTCCAAGAGGAGGGACATGG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACCATCAGGATTACCTTaGCCCCAAACTCCCAAACCA | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTPSGLP*PQTPKP Trigger: TGGTTTGGGAGTTTGGGGTCAAGGTAATCCTGATGG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAACCATGGTGAGAATGTaGTCAGAACTGCTGGGAACC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTTMVRM*SELLGT Trigger: GGTTCCCAGCAGTTCTGATCACATTCTCACCATGGT...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAGAGCGGAATTCCTTCTaGAATGTAACCTGGAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTERNSF*NVTWRV Trigger: GACCCTCCAGGTTACATTCCAGAAGGAATTCCGCTC...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR TCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAGGAGCAGGGAAAGGATaGCTCTTGTCTCATCATATG | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTGAGKG*LLSHHM Trigger: CATATGATGAGACAAGAGTCATCCTTTCCCTGCTCC...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATTCTGGAATGTAACCTaGAGGGTCCTGAGAGTGATG | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTFWNVT*RVLRVM Trigger: CATCACTCTCAGGACCCTCCAGGTTACATTCCAGAA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAGACATATACTGTAGCTaGTGCACAGAGCGGAATTCC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTDIYCS*CTERNS Trigger: GGAATTCCGCTCTGTGCACCAGCTACAGTATATGTC...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAATCTCCAGGACCACTTaGAAGAGACTGAAGTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTISRTT*KRLKLG Trigger: TCCCAACTTCAGTCTCTTCCAAGTGGTCCTGGAGAT...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR GCA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAATATACTGTAGCTGGTaGACAGAGCGGAATTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: LRNFYFESGPQVPLIHNTIYCSW*TERNSF Trigger: GAAGGAATTCCGCTCTGTGCACCAGCTACAGTATAT...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS CCA 90 bp | GGGCACGTGGAGCCACCTGGCTGTAGATCGGGGTGTCCGTGCTGGTaGGCGCCCGCGGCCCCGGCCCTGTGCCCGCCGAAGCGCCACGCT | + |
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Preference number: 5 (lower is better) Translates to: GHVEPPGCRSGCPCW*APAAPALCPPKRHA Trigger: AGCGTGGCGCTTCGGCGGGCACAGGGCCGGGGCCGCGGGCGCCCACCAGCACGGACACCCCGATCTACAGCCAGGTGGCTCCACGTGCCC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000188972.3 |
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| CDS CCA 90 bp | TGTCCCCTGTGCGTCCTCCGTGTGTGCCACCGGTCGCTGGGCACGTaGAGCCACCTGGCTGTAGATCGGGGTGTCCGTGCTGGTGGGCGC | + |
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Preference number: 5 (lower is better) Translates to: CPLCVLRVCHRSLGT*SHLAVDRGVRAGGR Trigger: GCGCCCACCAGCACGGACACCCCGATCTACAGCCAGGTGGCTCCACGTGCCCAGCGACCGGTGGCACACACGGAGGACGCACAGGGGACA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000188972.3 |
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| CDS GCA 90 bp | AGGAACTCGGCGCAGTGCCGTTGTCCCCTGTGCGTCCTCCGTGTGTaGCACCGGTCGCTGGGCACGTGGAGCCACCTGGCTGTAGATCGG | + |
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Preference number: 5 (lower is better) Translates to: RNSAQCRCPLCVLRV*HRSLGTWSHLAVDR Trigger: CCGATCTACAGCCAGGTGGCTCCACGTGCCCAGCGACCGGTGGCACACACGGAGGACGCACAGGGGACAACGGCACTGCGCCGAGTTCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000188972.3 |
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| CDS GCA 90 bp | AGAGTTTTGGTCCGCAGGAACTCGGCGCAGTGCCGTTGTCCCCTGTaGGTCCTCCGTGTGTGCCACCGGTCGCTGGGCACGTGGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: RVLVRRNSAQCRCPL*VLRVCHRSLGTWSH Trigger: GTGGCTCCACGTGCCCAGCGACCGGTGGCACACACGGAGGACGCACAGGGGACAACGGCACTGCGCCGAGTTCCTGCGGACCAAAACTCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000188972.3 |
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| CDS CCA 90 bp | TCAACAGCGCACAGGACACCTGTTCGTCCGCAGCCAGCACTGCAGTaGACACAGAGGGGTCCAGGTCCAAGCCCTTGGAGGCAGCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: STAHRTPVRPQPALQ*TQRGPGPSPWRQRA Trigger: GGCCCGCTGCCTCCAAGGGCTTGGACCTGGACCCCTCTGTGTCCACTGCAGTGCTGGCTGCGGACGAACAGGTGTCCTGTGCGCTGTTGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 90 bp | GTCCAGGTCCAAGCCCTTGGAGGCAGCGGGCCTCCTCCACCATGGTaGGAATGTGATCAGAACTGCTGGGAACCCCGTGGTCTGGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: VQVQALGGSGPPPPW*ECDQNCWEPRGLAR Trigger: CCTGGCCAGACCACGGGGTTCCCAGCAGTTCTGATCACATTCTCACCATGGTGGAGGAGGCCCGCTGCCTCCAAGGGCTTGGACCTGGAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS GCA 90 bp | CATAGTCAACAGCGCACAGGACACCTGTTCGTCCGCAGCCAGCACTaGAGTGGACACAGAGGGGTCCAGGTCCAAGCCCTTGGAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: HSQQRTGHLFVRSQH*SGHRGVQVQALGGS Trigger: GCTGCCTCCAAGGGCTTGGACCTGGACCCCTCTGTGTCCACTGCAGTGCTGGCTGCGGACGAACAGGTGTCCTGTGCGCTGTTGACTATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 90 bp | CCAAGCCCTTGGAGGCAGCGGGCCTCCTCCACCATGGTGAGAATGTaGTCAGAACTGCTGGGAACCCCGTGGTCTGGCCAGGACATATAC | + |
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Preference number: 5 (lower is better) Translates to: PSPWRQRASSTMVRM*SELLGTPWSGQDIY Trigger: GTATATGTCCTGGCCAGACCACGGGGTTCCCAGCAGTTCTGATCACATTCTCACCATGGTGGAGGAGGCCCGCTGCCTCCAAGGGCTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 90 bp | CTGCTGGAGGATCCCGGGGCCCTTTGGGCCTTCCGATGCGCAAGTTaGAGCCTAGCCCTCCAGTCTGTGCTCCATCTGTTACTTCTTCGT | + |
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Preference number: 5 (lower is better) Translates to: LLEDPGALWAFRCAS*SLALQSVLHLLLLR Trigger: ACGAAGAAGTAACAGATGGAGCACAGACTGGAGGGCTAGGCTTCAACTTGCGCATCGGAAGGCCCAAAGGGCCCCGGGATCCTCCAGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS TCA 90 bp | CTGCAGGCCGCTGTTTCCGCATCTCCAGGACCACTTGGAAGAGACTaGAGTTGGGAGGGATTGTCTGGGTCAGCAGCAACTGCCTCACAT | + |
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Preference number: 5 (lower is better) Translates to: LQAAVSASPGPLGRD*SWEGLSGSAATASH Trigger: ATGTGAGGCAGTTGCTGCTGACCCAGACAATCCCTCCCAACTTCAGTCTCTTCCAAGTGGTCCTGGAGATGCGGAAACAGCGGCCTGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS CCA 90 bp | GAACTGCTGGGAACCCCGTGGTCTGGCCAGGACATATACTGTAGCTaGTGCACAGAGCGGAATTCCTTCTGGAATGTAACCTGGAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: ELLGTPWSGQDIYCS*CTERNSFWNVTWRV Trigger: GACCCTCCAGGTTACATTCCAGAAGGAATTCCGCTCTGTGCACCAGCTACAGTATATGTCCTGGCCAGACCACGGGGTTCCCAGCAGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS GCA 90 bp | TCCCTCCTCTTGGAGCAGGGAAAGGATGACTCTTGTCTCATCATATaGTACCACATCTTTGTAGCGGTTCTTGTTCGTGTTCCCAAGCCG | + |
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Preference number: 5 (lower is better) Translates to: SLLLEQGKDDSCLII*YHIFVAVLVRVPKP Trigger: CGGCTTGGGAACACGAACAAGAACCGCTACAAAGATGTGGTAGCATATGATGAGACAAGAGTCATCCTTTCCCTGCTCCAAGAGGAGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS GCA 90 bp | GAATTCCTTCTGGAATGTAACCTGGAGGGTCCTGAGAGTGATGTCTaGATTCAGTGTTGTCTCCTTTGTCAGGGTGATGCAGAAAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: EFLLECNLEGPESDV*IQCCLLCQGDAERP Trigger: GGGCCTTTCTGCATCACCCTGACAAAGGAGACAACACTGAATGCAGACATCACTCTCAGGACCCTCCAGGTTACATTCCAGAAGGAATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS-3UTR CAA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAGTGAGGCAGGGGTCCTaGCGTCGCAATGTAGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: LRNFYFESGPQVPLIHNTVRQGS*RRNVGL Trigger: CAGGCCTACATTGCGACGCAAGGACCCCTGCCTCAC...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CAA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATCCATGTCCCTCCTCTaGGAGCAGGGAAAGGATGAC | + |
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Preference number: 5 (lower is better) Translates to: LRNFYFESGPQVPLIHNTSMSLL*EQGKDD Trigger: GTCATCCTTTCCCTGCTCCAAGAGGAGGGACATGGA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CAA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACAGCCATCAGGATTACCTaGACCCCAAACTCCCAAACC | + |
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Preference number: 5 (lower is better) Translates to: LRNFYFESGPQVPLIHNTAIRIT*TPNSQT Trigger: GGTTTGGGAGTTTGGGGTCAAGGTAATCCTGATGGC...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CAA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATGGAAGAGACTGAAGTaGGGAGGGATTGTCTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: LRNFYFESGPQVPLIHNTWKRLK*GGIVWV Trigger: GACCCAGACAATCCCTCCCAACTTCAGTCTCTTCCA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CAA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACACATCTCCAGGACCACTaGGAAGAGACTGAAGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: LRNFYFESGPQVPLIHNTHLQDH*EETEVG Trigger: CCCAACTTCAGTCTCTTCCAAGTGGTCCTGGAGATG...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS-3UTR CAA 90 bp | CTGAGAAACTTTTATTTTGAATCAGGCCCACAAGTCCCACTCATACATAACACATCCATTTTCTGTCTCTaGACAGGCCATCAGGATTAC | + |
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Preference number: 5 (lower is better) Translates to: LRNFYFESGPQVPLIHNTSIFCL*TGHQDY Trigger: GTAATCCTGATGGCCTGTCAAGAGACAGAAAATGGA...TGTGTTATGTATGAGTGGGACTTGTGGGCCTGATTCAAAATAAAAGTTTCTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS GCA 72 bp | GCGCAGTGCCGTTGTCCCCTGTGCGTCCTCCGTGTGTaGCACCGGTCGCTGGGCACGTGGAGCCACCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: AQCRCPLCVLRV*HRSLGTWSHLA Trigger: AGCCAGGTGGCTCCACGTGCCCAGCGACCGGTGGCACACACGGAGGACGCACAGGGGACAACGGCACTGCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000188972.3 |
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| CDS GCA 72 bp | GTCCGCAGGAACTCGGCGCAGTGCCGTTGTCCCCTGTaGGTCCTCCGTGTGTGCCACCGGTCGCTGGGCACG | + |
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Preference number: 6 (lower is better) Translates to: VRRNSAQCRCPL*VLRVCHRSLGT Trigger: CGTGCCCAGCGACCGGTGGCACACACGGAGGACGCACAGGGGACAACGGCACTGCGCCGAGTTCCTGCGGAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000188972.3 |
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| CDS CAA 90 bp | CAGGCCCGGAAGAGTTTTGGTCCGCAGGAACTCGGCGCAGTGCCGTaGTCCCCTGTGCGTCCTCCGTGTGTGCCACCGGTCGCTGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: QARKSFGPQELGAVP*SPVRPPCVPPVAGH Trigger: GTGCCCAGCGACCGGTGGCACACACGGAGGACGCACAGGGGACAACGGCACTGCGCCGAGTTCCTGCGGACCAAAACTCTTCCGGGCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000188972.3 |
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| CDS CCA 72 bp | CGCCACGCTTCTGCACCACAGCGTAAGTGTCAGCCATaGGGAGGGTCGGGGGCGCAGGCACCGAGATGCTCC | + |
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Preference number: 6 (lower is better) Translates to: RHASAPQRKCQP*GGSGAQAPRCS Trigger: GGAGCATCTCGGTGCCTGCGCCCCCGACCCTCCCCATGGCTGACACTTACGCTGTGGTGCAGAAGCGTGGCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS GCA 72 bp | CAGCGCACAGGACACCTGTTCGTCCGCAGCCAGCACTaGAGTGGACACAGAGGGGTCCAGGTCCAAGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: QRTGHLFVRSQH*SGHRGVQVQAL Trigger: AAGGGCTTGGACCTGGACCCCTCTGTGTCCACTGCAGTGCTGGCTGCGGACGAACAGGTGTCCTGTGCGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS CCA 72 bp | CTGCAGTGGACACAGAGGGGTCCAGGTCCAAGCCCTTaGAGGCAGCGGGCCTCCTCCACCATGGTGAGAATG | + |
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Preference number: 6 (lower is better) Translates to: LQWTQRGPGPSP*RQRASSTMVRM Trigger: CATTCTCACCATGGTGGAGGAGGCCCGCTGCCTCCAAGGGCTTGGACCTGGACCCCTCTGTGTCCACTGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS CAA 90 bp | GCAGCCAGCACTGCAGTGGACACAGAGGGGTCCAGGTCCAAGCCCTaGGAGGCAGCGGGCCTCCTCCACCATGGTGAGAATGTGATCAGA | + |
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Preference number: 6 (lower is better) Translates to: AASTAVDTEGSRSKP*EAAGLLHHGENVIR Trigger: TCTGATCACATTCTCACCATGGTGGAGGAGGCCCGCTGCCTCCAAGGGCTTGGACCTGGACCCCTCTGTGTCCACTGCAGTGCTGGCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 72 bp | TGGAGGCAGCGGGCCTCCTCCACCATGGTGAGAATGTaGTCAGAACTGCTGGGAACCCCGTGGTCTGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: WRQRASSTMVRM*SELLGTPWSGQ Trigger: CTGGCCAGACCACGGGGTTCCCAGCAGTTCTGATCACATTCTCACCATGGTGGAGGAGGCCCGCTGCCTCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS CAA 72 bp | ACTGCAGTGGACACAGAGGGGTCCAGGTCCAAGCCCTaGGAGGCAGCGGGCCTCCTCCACCATGGTGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: TAVDTEGSRSKP*EAAGLLHHGEN Trigger: ATTCTCACCATGGTGGAGGAGGCCCGCTGCCTCCAAGGGCTTGGACCTGGACCCCTCTGTGTCCACTGCAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 72 bp | CAAGCCCTTGGAGGCAGCGGGCCTCCTCCACCATGGTaGGAATGTGATCAGAACTGCTGGGAACCCCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: QALGGSGPPPPW*ECDQNCWEPRG Trigger: ACCACGGGGTTCCCAGCAGTTCTGATCACATTCTCACCATGGTGGAGGAGGCCCGCTGCCTCCAAGGGCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 72 bp | TGGGGGCTGGTGTCCTGGAGAGTGCGGGAGAATAGCTaGGCCACTGTGTGGTACAGGAACCTGTACTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: WGLVSWRVRENS*ATVWYRNLYCS Trigger: GGAGCAGTACAGGTTCCTGTACCACACAGTGGCTCAGCTATTCTCCCGCACTCTCCAGGACACCAGCCCCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 72 bp | GATCCCGGGGCCCTTTGGGCCTTCCGATGCGCAAGTTaGAGCCTAGCCCTCCAGTCTGTGCTCCATCTGTTA | + |
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Preference number: 6 (lower is better) Translates to: DPGALWAFRCAS*SLALQSVLHLL Trigger: TAACAGATGGAGCACAGACTGGAGGGCTAGGCTTCAACTTGCGCATCGGAAGGCCCAAAGGGCCCCGGGATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS CAA 90 bp | TCTGCTGGAGGATCCCGGGGCCCTTTGGGCCTTCCGATGCGCAAGTaGAAGCCTAGCCCTCCAGTCTGTGCTCCATCTGTTACTTCTTCG | + |
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Preference number: 6 (lower is better) Translates to: SAGGSRGPLGLPMRK*KPSPPVCAPSVTSS Trigger: CGAAGAAGTAACAGATGGAGCACAGACTGGAGGGCTAGGCTTCAACTTGCGCATCGGAAGGCCCAAAGGGCCCCGGGATCCTCCAGCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS CAA 90 bp | TGTCTGCACTGCTGCAGGCCGCTGTTTCCGCATCTCCAGGACCACTaGGAAGAGACTGAAGTTGGGAGGGATTGTCTGGGTCAGCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: CLHCCRPLFPHLQDH*EETEVGRDCLGQQQ Trigger: TTGCTGCTGACCCAGACAATCCCTCCCAACTTCAGTCTCTTCCAAGTGGTCCTGGAGATGCGGAAACAGCGGCCTGCAGCAGTGCAGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 72 bp | AGAAGGCTTCCTTGCAGATTGGAGCGCAGTTCTCCTTaGGGTTCTGGTAGTGGGGGCTGGTGTCCTGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: RRLPCRLERSSP*GSGSGGWCPGE Trigger: CTCTCCAGGACACCAGCCCCCACTACCAGAACCTCAAGGAGAACTGCGCTCCAATCTGCAAGGAAGCCTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS CAA 72 bp | TTCCGCATCTCCAGGACCACTTGGAAGAGACTGAAGTaGGGAGGGATTGTCTGGGTCAGCAGCAACTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: FRISRTTWKRLK*GGIVWVSSNCL Trigger: GAGGCAGTTGCTGCTGACCCAGACAATCCCTCCCAACTTCAGTCTCTTCCAAGTGGTCCTGGAGATGCGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 72 bp | TTTAGTGGAACACACACCTTCAGACTTCCAGGCCACTaGGCGGGCCTTAATGTCGCTGAACTCACGAGCGAG | + |
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Preference number: 6 (lower is better) Translates to: FSGTHTFRLPGH*AGLNVAELTSE Trigger: CTCGCTCGTGAGTTCAGCGACATTAAGGCCCGCTCAGTGGCCTGGAAGTCTGAAGGTGTGTGTTCCACTAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027302.14 |
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| CDS TCA 72 bp | GCTGTTTCCGCATCTCCAGGACCACTTGGAAGAGACTaGAGTTGGGAGGGATTGTCTGGGTCAGCAGCAACT | + |
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Preference number: 6 (lower is better) Translates to: AVSASPGPLGRD*SWEGLSGSAAT Trigger: AGTTGCTGCTGACCCAGACAATCCCTCCCAACTTCAGTCTCTTCCAAGTGGTCCTGGAGATGCGGAAACAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS GCA 72 bp | ACCCCGTGGTCTGGCCAGGACATATACTGTAGCTGGTaGACAGAGCGGAATTCCTTCTGGAATGTAACCTGG | + |
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Preference number: 6 (lower is better) Translates to: TPWSGQDIYCSW*TERNSFWNVTW Trigger: CCAGGTTACATTCCAGAAGGAATTCCGCTCTGTGCACCAGCTACAGTATATGTCCTGGCCAGACCACGGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS CCA 72 bp | GGAACCCCGTGGTCTGGCCAGGACATATACTGTAGCTaGTGCACAGAGCGGAATTCCTTCTGGAATGTAACC | + |
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Preference number: 6 (lower is better) Translates to: GTPWSGQDIYCS*CTERNSFWNVT Trigger: GGTTACATTCCAGAAGGAATTCCGCTCTGTGCACCAGCTACAGTATATGTCCTGGCCAGACCACGGGGTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS TCA 72 bp | TTTAGTGGAACACACACCTTCAGACTTCCAGGCCACTaGGCGGGCCTTAATGTCCAAGTCCGTATGGCGACT | + |
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Preference number: 6 (lower is better) Translates to: FSGTHTFRLPGH*AGLNVQVRMAT Trigger: AGTCGCCATACGGACTTGGACATTAAGGCCCGCTCAGTGGCCTGGAAGTCTGAAGGTGTGTGTTCCACTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190122.2 |
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| CDS GCA 72 bp | CTGGAATGTAACCTGGAGGGTCCTGAGAGTGATGTCTaGATTCAGTGTTGTCTCCTTTGTCAGGGTGATGCA | + |
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Preference number: 6 (lower is better) Translates to: LECNLEGPESDV*IQCCLLCQGDA Trigger: TGCATCACCCTGACAAAGGAGACAACACTGAATGCAGACATCACTCTCAGGACCCTCCAGGTTACATTCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS CCA 72 bp | TGGTGCACAGAGCGGAATTCCTTCTGGAATGTAACCTaGAGGGTCCTGAGAGTGATGTCTGCATTCAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: WCTERNSFWNVT*RVLRVMSAFSV Trigger: AACACTGAATGCAGACATCACTCTCAGGACCCTCCAGGTTACATTCCAGAAGGAATTCCGCTCTGTGCACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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| CDS CAA 72 bp | GTAGCGTTCACACTTCCTCCGTCCATTTTCTGTCTCTaGACAGGCCATCAGGATTACCTTGACCCCAAACTC | + |
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Preference number: 6 (lower is better) Translates to: VAFTLPPSIFCL*TGHQDYLDPKL Trigger: GAGTTTGGGGTCAAGGTAATCCTGATGGCCTGTCAAGAGACAGAAAATGGACGGAGGAAGTGTGAACGCTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027302.14 ENSMUST00000190122.2 |
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