Pregenerated sensors for PTP4A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028788Ensembl transcript IDs: ENSMUST00000030578.14, ENSMUST00000165853.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCAGAGACCCCACACCACTGCCACATGATGCCGTGAGCACATGCTaGTCCCTGGGCTGCCTACTGTTGCTCTTCCACCCTGTTACAGCC | + |
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Preference number: 1 (lower is better) Translates to: SRDPTPLPHDAVSTC*SLGCLLLLFHPVTA Trigger: GGCTGTAACAGGGTGGAAGAGCAACAGTAGGCAGCCCAGGGAGCAGCATGTGCTCACGGCATCATGTGGCAGTGGTGTGGGGTCTCTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 90 bp | CTGAGCAGAGACCCCACACCACTGCCACATGATGCCGTGAGCACATaGTGCTCCCTGGGCTGCCTACTGTTGCTCTTCCACCCTGTTACA | + |
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Preference number: 1 (lower is better) Translates to: LSRDPTPLPHDAVST*CSLGCLLLLFHPVT Trigger: TGTAACAGGGTGGAAGAGCAACAGTAGGCAGCCCAGGGAGCAGCATGTGCTCACGGCATCATGTGGCAGTGGTGTGGGGTCTCTGCTCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR CCA 90 bp | CTCCCCAGAACCAGGAATGACACTATCTCAGGCAGGCTATGCTGGTaGACACCTGCATGTGCAGACCCCCATGGGAGCTATTGTGCTCGT | + |
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Preference number: 1 (lower is better) Translates to: LPRTRNDTISGRLCW*TPACADPHGSYCAR Trigger: ACGAGCACAATAGCTCCCATGGGGGTCTGCACATGCAGGTGTCCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCTGGGGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR TCA 90 bp | TTTCTGTATCAACACACTGAGCAGAGACCCCACACCACTGCCACATaGTGCCGTGAGCACATGCTGCTCCCTGGGCTGCCTACTGTTGCT | + |
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Preference number: 1 (lower is better) Translates to: FLYQHTEQRPHTTAT*CREHMLLPGLPTVA Trigger: AGCAACAGTAGGCAGCCCAGGGAGCAGCATGTGCTCACGGCATCATGTGGCAGTGGTGTGGGGTCTCTGCTCAGTGTGTTGATACAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 90 bp | ACCCTTCTCCCCAGAACCAGGAATGACACTATCTCAGGCAGGCTATaGTGGTGGACACCTGCATGTGCAGACCCCCATGGGAGCTATTGT | + |
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Preference number: 1 (lower is better) Translates to: TLLPRTRNDTISGRL*WWTPACADPHGSYC Trigger: ACAATAGCTCCCATGGGGGTCTGCACATGCAGGTGTCCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCTGGGGAGAAGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR CCA 90 bp | CTTCTCCCCAGAACCAGGAATGACACTATCTCAGGCAGGCTATGCTaGTGGACACCTGCATGTGCAGACCCCCATGGGAGCTATTGTGCT | + |
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Preference number: 1 (lower is better) Translates to: LLPRTRNDTISGRLC*WTPACADPHGSYCA Trigger: AGCACAATAGCTCCCATGGGGGTCTGCACATGCAGGTGTCCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCTGGGGAGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 90 bp | AACATGCTAGCTCTCCTGGAAACACCAATGGCCTCCAGTCATCTCTaGAATAAAGTTTCTAGGAGGCCCACTTGTTTCACTGTTGGGAAA | + |
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Preference number: 1 (lower is better) Translates to: NMLALLETPMASSHL*NKVSRRPTCFTVGK Trigger: TTTCCCAACAGTGAAACAAGTGGGCCTCCTAGAAACTTTATTGCAGAGATGACTGGAGGCCATTGGTGTTTCCAGGAGAGCTAGCATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 90 bp | GGTACTGCTGGTTATAAACACTTAGGTGAAGAGGGTACACAGAGGTaGCCCTCCATTTGCTTTGTCTGGTCAACTTCTGCAAACAAGGAA | + |
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Preference number: 1 (lower is better) Translates to: GTAGYKHLGEEGTQR*PSICFVWSTSANKE Trigger: TTCCTTGTTTGCAGAAGTTGACCAGACAAAGCAAATGGAGGGGCACCTCTGTGTACCCTCTTCACCTAAGTGTTTATAACCAGCAGTACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR TCA 90 bp | ACCCTTCTCCCCAGAACCAGGAATGACACTATCTCAGGCAGGCTATGCTGGTGGAGGCAGGAAGAGAGATaGGGAAAATCTACCTCCCCC | + |
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Preference number: 2 (lower is better) Translates to: TLLPRTRNDTISGRLCWWRQEER*GKSTSP Trigger: GGGGGAGGTAGATTTTCCTCATCTCTCTTCCTGCCT...CCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCTGGGGAGAAGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR TCA 90 bp | ACCCTTCTCCCCAGAACCAGGAATGACACTATCTCAGGCAGGCTATGCTGGTGGACGATCAAAATCCAGTaGTGGCTGCACCCAAGGCTT | + |
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Preference number: 2 (lower is better) Translates to: TLLPRTRNDTISGRLCWWTIKIQ*WLHPRL Trigger: AAGCCTTGGGTGCAGCCATCACTGGATTTTGATCGT...CCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCTGGGGAGAAGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | AAGACAAAGGGCTGCTTTATTCTCCTTCACACACCCTTCTCCCCAGAACCAGGAATGCTGGTGGACACCTaGATGTGCAGACCCCCATGG | + |
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Preference number: 2 (lower is better) Translates to: KTKGCFILLHTPFSPEPGMLVDT*MCRPPW Trigger: CCATGGGGGTCTGCACATGCAGGTGTCCACCAGCAT...TCCTGGTTCTGGGGAGAAGGGTGTGTGAAGGAGAATAAAGCAGCCCTTTGTCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | GGCAGGAAGAGAGATGAGGAAAATCTACCTCCCCCAGATCCCACCCACCACAAGCATAATGGAAGTGTGTaGTCCCAACAACTGGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: GRKRDEENLPPPDPTHHKHNGSV*SQQLAP Trigger: TGGAGCCAGTTGTTGGGAGCACACACTTCCATTATG...CTTGTGGTGGGTGGGATCTGGGGGAGGTAGATTTTCCTCATCTCTCTTCCTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGCATGTGCAGACCCCCATGGGAGCTATTGTGCTCGTGAACAAATACACACATGGGCTGCCTACTGTTaGTCTTCCACCCTGTTACAG | + |
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Preference number: 2 (lower is better) Translates to: PACADPHGSYCAREQIHTWAAYC*SSTLLQ Trigger: CTGTAACAGGGTGGAAGAGCAACAGTAGGCAGCCCA...TGTGTGTATTTGTTCACGAGCACAATAGCTCCCATGGGGGTCTGCACATGCAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | ACCCTTCTCCCCAGAACCAGGAATGACACTATCTCAGGCAGGCTATGCTGGTGGGGACCACAGAATATATaGGCCACTGCCTTTTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: TLLPRTRNDTISGRLCWWGPQNI*ATAFSL Trigger: CAAAGAAAAGGCAGTGGCGCATATATTCTGTGGTCC...CCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCTGGGGAGAAGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR TCA 90 bp | ACCCTTCTCCCCAGAACCAGGAATGACACTATCTCAGGCAGGCTATGCTGGTGGGTTCTGTTGCTCCTTTaGCTATTTCTGAAATCGGTC | + |
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Preference number: 2 (lower is better) Translates to: TLLPRTRNDTISGRLCWWVLLLL*LFLKSV Trigger: GACCGATTTCAGAAATAGTCAAAGGAGCAACAGAAC...CCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCTGGGGAGAAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGCATGTGCAGACCCCCATGGGAGCTATTGTGCTCGTGAACAAATACACACACATAATGGAAGTGTGTaGTCCCAACAACTGGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: PACADPHGSYCAREQIHTHNGSV*SQQLAP Trigger: TGGAGCCAGTTGTTGGGAGCACACACTTCCATTATG...TGTGTGTATTTGTTCACGAGCACAATAGCTCCCATGGGGGTCTGCACATGCAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR TCA 90 bp | AGGGAGGCAGGAAGAGAGATGAGGAAAATCTACCTCCCCCAGATCCCACCCACCTCAATCATTAGGAGTTaGGGAGTACTGAATCCATTA | + |
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Preference number: 2 (lower is better) Translates to: REAGREMRKIYLPQIPPTSIIRS*GVLNPL Trigger: TAATGGATTCAGTACTCCTCAACTCCTAATGATTGA...GGTGGGTGGGATCTGGGGGAGGTAGATTTTCCTCATCTCTCTTCCTGCCTCCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR TCA 90 bp | ACACACACACACACCAAAATTCTAGCATGTCAAGTGGAAAAGGTTTGGGTGATATGCCACATGATGCCGTaGGCACATGCTGCTCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: THTHTKILACQVEKVWVICHMMP*AHAAPW Trigger: CCAGGGAGCAGCATGTGCTCACGGCATCATGTGGCA...TATCACCCAAACCTTTTCCACTTGACATGCTAGAATTTTGGTGTGTGTGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | AATCAAAACAATTGCATCAACAGTAAACAGGCAACTCAGAAAGCCACCAACATCGCCGTGAGCACATGCTaGTCCCTGGGCTGCCTACTG | + |
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Preference number: 2 (lower is better) Translates to: NQNNCINSKQATQKATNIAVSTC*SLGCLL Trigger: CAGTAGGCAGCCCAGGGAGCAGCATGTGCTCACGGC...GATGTTGGTGGCTTTCTGAGTTGCCTGTTTACTGTTGATGCAATTGTTTTGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | ACCCTTCTCCCCAGAACCAGGAATGACACTATCTCAGGCAGGCTATGCTGGTGGGAATATATGCGCCACTaGCTTTTCTTTGCTTTTATT | + |
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Preference number: 2 (lower is better) Translates to: TLLPRTRNDTISGRLCWWEYMRH*LFFAFI Trigger: AATAAAAGCAAAGAAAAGGCAGTGGCGCATATATTC...CCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCTGGGGAGAAGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | AAAAATCAAAACAATTGCATCAACAGTAAACAGGCAACTCAGAAAGCCACCAACGATGCCGTGAGCACATaGTGCTCCCTGGGCTGCCTA | + |
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Preference number: 2 (lower is better) Translates to: KNQNNCINSKQATQKATNDAVST*CSLGCL Trigger: TAGGCAGCCCAGGGAGCAGCATGTGCTCACGGCATC...GTTGGTGGCTTTCTGAGTTGCCTGTTTACTGTTGATGCAATTGTTTTGATTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGCATGTGCAGACCCCCATGGGAGCTATTGTGCTCGTGAACAAATACACACATGTCTGGTCAACTTCTaGAAACAAGGAAAAACAGCT | + |
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Preference number: 2 (lower is better) Translates to: PACADPHGSYCAREQIHTCLVNF*KQGKTA Trigger: AGCTGTTTTTCCTTGTTTGCAGAAGTTGACCAGACA...TGTGTGTATTTGTTCACGAGCACAATAGCTCCCATGGGGGTCTGCACATGCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR CCA 90 bp | AAAACAATTGCATCAACAGTAAACAGGCAACTCAGAAAGCCACCAACATCTGGGTCCTGGAAACACCAATaGCCTCCAGTCATCTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: KTIASTVNRQLRKPPTSGSWKHQ*PPVISA Trigger: TGCAGAGATGACTGGAGGCCATTGGTGTTTCCAGGA...CCCAGATGTTGGTGGCTTTCTGAGTTGCCTGTTTACTGTTGATGCAATTGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR CCA 90 bp | CCTGCATGTGCAGACCCCCATGGGAGCTATTGTGCTCGTGAACAAATACACACATGGTTAATATTCTGCTaGTTTTCCTCAGACATCTAT | + |
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Preference number: 2 (lower is better) Translates to: PACADPHGSYCAREQIHTWLIFC*FSSDIY Trigger: ATAGATGTCTGAGGAAAACCAGCAGAATATTAACCA...TGTGTGTATTTGTTCACGAGCACAATAGCTCCCATGGGGGTCTGCACATGCAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR CCA 90 bp | AAGACAAAGGGCTGCTTTATTCTCCTTCACACACCCTTCTCCCCAGAACCAGGATTATTTTTCATTTTCTaGGATGAGGCAGGAAGGTAT | + |
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Preference number: 2 (lower is better) Translates to: KTKGCFILLHTPFSPEPGLFFIF*DEAGRY Trigger: ATACCTTCCTGCCTCATCCCAGAAAATGAAAAATAA...TCCTGGTTCTGGGGAGAAGGGTGTGTGAAGGAGAATAAAGCAGCCCTTTGTCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | AAAACAATTGCATCAACAGTAAACAGGCAACTCAGAAAGCCACCAACATCTGGGCACTGGTTAATATTCTaGTGGTTTTCCTCAGACATC | + |
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Preference number: 2 (lower is better) Translates to: KTIASTVNRQLRKPPTSGHWLIF*WFSSDI Trigger: GATGTCTGAGGAAAACCAGCAGAATATTAACCAGTG...CCCAGATGTTGGTGGCTTTCTGAGTTGCCTGTTTACTGTTGATGCAATTGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | AAAACAATTGCATCAACAGTAAACAGGCAACTCAGAAAGCCACCAACATCTGGGTGTCTGGTCAACTTCTaGAAACAAGGAAAAACAGCT | + |
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Preference number: 2 (lower is better) Translates to: KTIASTVNRQLRKPPTSGCLVNF*KQGKTA Trigger: AGCTGTTTTTCCTTGTTTGCAGAAGTTGACCAGACA...CCCAGATGTTGGTGGCTTTCTGAGTTGCCTGTTTACTGTTGATGCAATTGTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR CCA 90 bp | AATCAAAACAATTGCATCAACAGTAAACAGGCAACTCAGAAAGCCACCAACATCAGACTAGAAACAGCCTaGACCACAGAATATATGCGC | + |
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Preference number: 2 (lower is better) Translates to: NQNNCINSKQATQKATNIRLETA*TTEYMR Trigger: GCGCATATATTCTGTGGTCCAGGCTGTTTCTAGTCT...GATGTTGGTGGCTTTCTGAGTTGCCTGTTTACTGTTGATGCAATTGTTTTGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR CAA 90 bp | GTCATCTCTGCAATAAAGTTTCTAGGAGGCCCACTTGTTTCACTGTaGGGAAAAAGAATTCTCTCAGCTAAATTACAGGAGAAAGACTCT | + |
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Preference number: 2 (lower is better) Translates to: VISAIKFLGGPLVSL*GKRILSAKLQEKDS Trigger: AGAGTCTTTCTCCTGTAATTTAGCTGAGAGAATTCTTTTTCCCAACAGTGAAACAAGTGGGCCTCCTAGAAACTTTATTGCAGAGATGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCACTGTTGGGAAAAAGAATTCTCTCAGCTAAATTACAGGAGAAAGACTCTGGGACCACAGAATATATaGGCCACTGCCTTTTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: FHCWEKEFSQLNYRRKTLGPQNI*ATAFSL Trigger: CAAAGAAAAGGCAGTGGCGCATATATTCTGTGGTCC...CAGAGTCTTTCTCCTGTAATTTAGCTGAGAGAATTCTTTTTCCCAACAGTGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | AAAAATCAAAACAATTGCATCAACAGTAAACAGGCAACTCAGAAAGCCACCAACAGATGTCATCCATCCTaGTGGCCTGACGATCAAAAT | + |
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Preference number: 2 (lower is better) Translates to: KNQNNCINSKQATQKATNRCHPS*WPDDQN Trigger: ATTTTGATCGTCAGGCCAGCAGGATGGATGACATCT...GTTGGTGGCTTTCTGAGTTGCCTGTTTACTGTTGATGCAATTGTTTTGATTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR TCA 90 bp | AAAAATCAAAACAATTGCATCAACAGTAAACAGGCAACTCAGAAAGCCACCAACGTTCTGTTGCTCCTTTaGCTATTTCTGAAATCGGTC | + |
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Preference number: 2 (lower is better) Translates to: KNQNNCINSKQATQKATNVLLLL*LFLKSV Trigger: GACCGATTTCAGAAATAGTCAAAGGAGCAACAGAAC...GTTGGTGGCTTTCTGAGTTGCCTGTTTACTGTTGATGCAATTGTTTTGATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCACTGTTGGGAAAAAGAATTCTCTCAGCTAAATTACAGGAGAAAGACTCTGCACTGGTTAATATTCTaGTGGTTTTCCTCAGACATC | + |
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Preference number: 2 (lower is better) Translates to: FHCWEKEFSQLNYRRKTLHWLIF*WFSSDI Trigger: GATGTCTGAGGAAAACCAGCAGAATATTAACCAGTG...CAGAGTCTTTCTCCTGTAATTTAGCTGAGAGAATTCTTTTTCCCAACAGTGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCACTGTTGGGAAAAAGAATTCTCTCAGCTAAATTACAGGAGAAAGACTCTGTCAATCATTAGGAGTTaGGGAGTACTGAATCCATTA | + |
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Preference number: 2 (lower is better) Translates to: FHCWEKEFSQLNYRRKTLSIIRS*GVLNPL Trigger: TAATGGATTCAGTACTCCTCAACTCCTAATGATTGA...CAGAGTCTTTCTCCTGTAATTTAGCTGAGAGAATTCTTTTTCCCAACAGTGAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR TCA 72 bp | CAACACACTGAGCAGAGACCCCACACCACTGCCACATaGTGCCGTGAGCACATGCTGCTCCCTGGGCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: QHTEQRPHTTAT*CREHMLLPGLP Trigger: AGGCAGCCCAGGGAGCAGCATGTGCTCACGGCATCATGTGGCAGTGGTGTGGGGTCTCTGCTCAGTGTGTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 72 bp | CCCACACCACTGCCACATGATGCCGTGAGCACATGCTaGTCCCTGGGCTGCCTACTGTTGCTCTTCCACCCT | + |
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Preference number: 3 (lower is better) Translates to: PTPLPHDAVSTC*SLGCLLLLFHP Trigger: AGGGTGGAAGAGCAACAGTAGGCAGCCCAGGGAGCAGCATGTGCTCACGGCATCATGTGGCAGTGGTGTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 72 bp | GACCCCACACCACTGCCACATGATGCCGTGAGCACATaGTGCTCCCTGGGCTGCCTACTGTTGCTCTTCCAC | + |
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Preference number: 3 (lower is better) Translates to: DPTPLPHDAVST*CSLGCLLLLFH Trigger: GTGGAAGAGCAACAGTAGGCAGCCCAGGGAGCAGCATGTGCTCACGGCATCATGTGGCAGTGGTGTGGGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 72 bp | CCCAGAACCAGGAATGACACTATCTCAGGCAGGCTATaGTGGTGGACACCTGCATGTGCAGACCCCCATGGG | + |
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Preference number: 3 (lower is better) Translates to: PRTRNDTISGRL*WWTPACADPHG Trigger: CCCATGGGGGTCTGCACATGCAGGTGTCCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR CCA 72 bp | AGAACCAGGAATGACACTATCTCAGGCAGGCTATGCTaGTGGACACCTGCATGTGCAGACCCCCATGGGAGC | + |
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Preference number: 3 (lower is better) Translates to: RTRNDTISGRLC*WTPACADPHGS Trigger: GCTCCCATGGGGGTCTGCACATGCAGGTGTCCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR TCA 72 bp | GTCATCCATCCTGCTGGCCTGACGATCAAAATCCAGTaGTGGCTGCACCCAAGGCTTGTAGCAGGGTACTGC | + |
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Preference number: 3 (lower is better) Translates to: VIHPAGLTIKIQ*WLHPRLVAGYC Trigger: GCAGTACCCTGCTACAAGCCTTGGGTGCAGCCATCACTGGATTTTGATCGTCAGGCCAGCAGGATGGATGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR CCA 72 bp | ACCAGGAATGACACTATCTCAGGCAGGCTATGCTGGTaGACACCTGCATGTGCAGACCCCCATGGGAGCTAT | + |
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Preference number: 3 (lower is better) Translates to: TRNDTISGRLCW*TPACADPHGSY Trigger: ATAGCTCCCATGGGGGTCTGCACATGCAGGTGTCCACCAGCATAGCCTGCCTGAGATAGTGTCATTCCTGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR TCA 72 bp | TGCATGTGCAGACCCCCATGGGAGCTATTGTGCTCGTaGACAAATACACACACACACACACACACACCAAAA | + |
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Preference number: 3 (lower is better) Translates to: CMCRPPWELLCS*TNTHTHTHTPK Trigger: TTTTGGTGTGTGTGTGTGTGTGTGTGTATTTGTTCACGAGCACAATAGCTCCCATGGGGGTCTGCACATGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 72 bp | GCTCTCCTGGAAACACCAATGGCCTCCAGTCATCTCTaGAATAAAGTTTCTAGGAGGCCCACTTGTTTCACT | + |
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Preference number: 3 (lower is better) Translates to: ALLETPMASSHL*NKVSRRPTCFT Trigger: AGTGAAACAAGTGGGCCTCCTAGAAACTTTATTGCAGAGATGACTGGAGGCCATTGGTGTTTCCAGGAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGCATGTGCAGACCCCCATGGGAGCTATTGTGCTCGTGAACAAATACACACACACTTTTCCATGACATaGTTAGATAGCAGATCCACA | + |
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Preference number: 3 (lower is better) Translates to: PACADPHGSYCAREQIHTHFSMT*LDSRST Trigger: TGTGGATCTGCTATCTAACAATGTCATGGAAAAGTG...TGTGTGTATTTGTTCACGAGCACAATAGCTCCCATGGGGGTCTGCACATGCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR CAA 90 bp | ACACACACACACACCAAAATTCTAGCATGTCAAGTGGAAAAGGTTTGGGTGATACTGGGCTGCCTACTGTaGCTCTTCCACCCTGTTACA | + |
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Preference number: 3 (lower is better) Translates to: THTHTKILACQVEKVWVILGCLL*LFHPVT Trigger: TGTAACAGGGTGGAAGAGCAACAGTAGGCAGCCCAG...TATCACCCAAACCTTTTCCACTTGACATGCTAGAATTTTGGTGTGTGTGTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 72 bp | GGTTATAAACACTTAGGTGAAGAGGGTACACAGAGGTaGCCCTCCATTTGCTTTGTCTGGTCAACTTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: GYKHLGEEGTQR*PSICFVWSTSA Trigger: TGCAGAAGTTGACCAGACAAAGCAAATGGAGGGGCACCTCTGTGTACCCTCTTCACCTAAGTGTTTATAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR-3UTR CAA 90 bp | AAGACAAAGGGCTGCTTTATTCTCCTTCACACACCCTTCTCCCCAGAACCAGGACCACTTGTTTCACTGTaGGGAAAAAGAATTCTCTCA | + |
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Preference number: 3 (lower is better) Translates to: KTKGCFILLHTPFSPEPGPLVSL*GKRILS Trigger: TGAGAGAATTCTTTTTCCCAACAGTGAAACAAGTGG...TCCTGGTTCTGGGGAGAAGGGTGTGTGAAGGAGAATAAAGCAGCCCTTTGTCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR GCA 72 bp | TTAGGTGAAGAGGGTACACAGAGGTGCCCCTCCATTTaGTTTGTCTGGTCAACTTCTGCAAACAAGGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: LGEEGTQRCPSI*FVWSTSANKEK Trigger: TTTTTCCTTGTTTGCAGAAGTTGACCAGACAAAGCAAATGGAGGGGCACCTCTGTGTACCCTCTTCACCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR CAA 72 bp | GTGAAGAGGGTACACAGAGGTGCCCCTCCATTTGCTTaGTCTGGTCAACTTCTGCAAACAAGGAAAAACAGC | + |
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Preference number: 4 (lower is better) Translates to: VKRVHRGAPPFA*SGQLLQTRKNS Trigger: GCTGTTTTTCCTTGTTTGCAGAAGTTGACCAGACAAAGCAAATGGAGGGGCACCTCTGTGTACCCTCTTCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| CDS-3UTR GCA 90 bp | AAAATCAAAACAATTGCATCAACAGTAAACAGGCAACTCAGAAAGCCACCAACATGCAACACAATGCACTaGAACACAACAGCCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: KIKTIASTVNRQLRKPPTCNTMH*NTTAWL Trigger: GAGCCAGGCTGTTGTGTTGCAGTGCATTGTGTTGCA...TGTTGGTGGCTTTCTGAGTTGCCTGTTTACTGTTGATGCAATTGTTTTGATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| CDS-3UTR GCA 90 bp | TTTCACTGTTGGGAAAAAGAATTCTCTCAGCTAAATTACAGGAGAAAGACTCTGTGCAACACAATGCACTaGAACACAACAGCCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: FHCWEKEFSQLNYRRKTLCNTMH*NTTAWL Trigger: GAGCCAGGCTGTTGTGTTGCAGTGCATTGTGTTGCA...CAGAGTCTTTCTCCTGTAATTTAGCTGAGAGAATTCTTTTTCCCAACAGTGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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| 3UTR CAA 72 bp | ATTCTAGCATGTCAAGTGGAAAAGGTTTGGGTGATATaGATCAAAACCCTTGAGGAGTCAACAGTTAACCTA | + |
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Preference number: 4 (lower is better) Translates to: ILACQVEKVWVI*IKTLEESTVNL Trigger: TAGGTTAACTGTTGACTCCTCAAGGGTTTTGATCAATATCACCCAAACCTTTTCCACTTGACATGCTAGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030578.14 ENSMUST00000165853.2 |
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