Pregenerated sensors for PTP4A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000117310Ensembl transcript IDs: ENSMUST00000027232.15, ENSMUST00000076587.6, ENSMUST00000232841.2, ENSMUST00000233506.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTGATCATAGCCCAAATATAGAGGTTGCAATTCTGTCAAACTTGTaGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGT | + |
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Preference number: 1 (lower is better) Translates to: VDHSPNIEVAILSNL*PGKTGFSVFLWSCS Trigger: ACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAAGTTTGACAGAATTGCAACCTCTATATTTGGGCTATGATCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | TTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAGACTTCAAGCACCGGAGCTCTaGCAAGGCCTGCGACACAAT | + |
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Preference number: 2 (lower is better) Translates to: LWPGKTGFSVFLWSCSRLQAPEL*QGLRHN Trigger: ATTGTGTCGCAGGCCTTGGCAGAGCTCCGGTGCTTG...AAGTCTACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076587.6 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | TGCATACCACTATGCATGATTTATCTGACACTGGGAATTAAACTCAGGGCTTCCCAAGCACCGGAGCTCTaGCAAGGCCTGCGACACAAT | + |
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Preference number: 2 (lower is better) Translates to: CIPLCMIYLTLGIKLRASQAPEL*QGLRHN Trigger: ATTGTGTCGCAGGCCTTGGCAGAGCTCCGGTGCTTG...GGAAGCCCTGAGTTTAATTCCCAGTGTCAGATAAATCATGCATAGTGGTATGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATTACAGAGCTCTGCCAAGGCCTaGGACACAATGGACAGCAAT | + |
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Preference number: 2 (lower is better) Translates to: ADICQMTVTQQIPGLRLQSSAKA*DTMDSN Trigger: ATTGCTGTCCATTGTGTCGCAGGCCTTGGCAGAGCT...CTGTAATCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | CAAACTTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAAGGCCTGCGACACAATaGACAGCAATACAGCAACCA | + |
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Preference number: 2 (lower is better) Translates to: QTCGLVRLVFQYSCGAAVRPATQ*TAIQQP Trigger: TGGTTGCTGTATTGCTGTCCATTGTGTCGCAGGCCT...TACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAAGTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076587.6 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | TTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAGACTTAGGCCTGCGACACAATaGACAGCAATACAGCAACCA | + |
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Preference number: 2 (lower is better) Translates to: LWPGKTGFSVFLWSCSRLRPATQ*TAIQQP Trigger: TGGTTGCTGTATTGCTGTCCATTGTGTCGCAGGCCT...AAGTCTACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076587.6 ENSMUST00000233506.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGGAGCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGAGACGGCCTCTTCTCCTaGATGAGTAATCACATCACT | + |
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Preference number: 2 (lower is better) Translates to: SGADICQMTVTQQIPGLRDGLFS*MSNHIT Trigger: AGTGATGTGATTACTCATTCAGGAGAAGAGGCCGTC...TCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGCTCCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATTACAGGACGGCCTCTTCTCCTaGATGAGTAATCACATCACT | + |
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Preference number: 2 (lower is better) Translates to: ADICQMTVTQQIPGLRLQDGLFS*MSNHIT Trigger: AGTGATGTGATTACTCATTCAGGAGAAGAGGCCGTC...CTGTAATCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATTACAGTCTCAGTGGGCACAATaGCTGCTGGCATCTATTTTA | + |
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Preference number: 2 (lower is better) Translates to: ADICQMTVTQQIPGLRLQSQWAQ*LLASIL Trigger: TAAAATAGATGCCAGCAGTCATTGTGCCCACTGAGA...CTGTAATCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | TCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGATTCACAATTATAGCTCTGCCAAGGCCTaGGACACAATGGACAGCAAT | + |
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Preference number: 2 (lower is better) Translates to: SITNCFPSVPNIQLIHNYSSAKA*DTMDSN Trigger: ATTGCTGTCCATTGTGTCGCAGGCCTTGGCAGAGCT...ATAATTGTGAATCAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076587.6 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | TCAGGAGCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGAAAACCTGACGTATTCTaGCATAAGTGTGGGAGATGT | + |
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Preference number: 2 (lower is better) Translates to: SGADICQMTVTQQIPGLRKPDVF*HKCGRC Trigger: ACATCTCCCACACTTATGCCAGAATACGTCAGGTTT...TCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGCTCCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGGAGCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGAACACATTGGGTAATATaGATGACAAATCAGGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: SGADICQMTVTQQIPGLRTHWVI*MTNQVP Trigger: TGGGACCTGATTTGTCATGCATATTACCCAATGTGT...TCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGCTCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | CAAACTTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAACACATTGGGTAATATaGATGACAAATCAGGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: QTCGLVRLVFQYSCGAAVTHWVI*MTNQVP Trigger: TGGGACCTGATTTGTCATGCATATTACCCAATGTGT...TACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAAGTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGGAGCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATCAGGAGCAGATATTTaGCAGATGACTGTAACACAA | + |
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Preference number: 2 (lower is better) Translates to: SGADICQMTVTQQIPGLRSGADI*QMTVTQ Trigger: TTGTGTTACAGTCATCTGGCAAATATCTGCTCCTGA...TCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGCTCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATTACAGCTGGCATCTATTTTATaGTACCTCTTAGTGGAGACG | + |
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Preference number: 2 (lower is better) Translates to: ADICQMTVTQQIPGLRLQLASIL*YLLVET Trigger: CGTCTCCACTAAGAGGTACCATAAAATAGATGCCAG...CTGTAATCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | CAAACTTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTATGCTTGAGTATGAATTaGGAGAAACGGGCAATGAAA | + |
|
Preference number: 2 (lower is better) Translates to: QTCGLVRLVFQYSCGAAVCLSMN*EKRAMK Trigger: TTTCATTGCCCGTTTCTCCCAATTCATACTCAAGCA...TACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAAGTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076587.6 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | CCCTTTGCAGTATTCCTAAATATCAGGAGCAGATATTTGCCAGATGACTGTAACTGGAACTTGAGCACATaGAATGTGATCACTAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: PFAVFLNIRSRYLPDDCNWNLST*NVITRQ Trigger: CTGCCTAGTGATCACATTGCATGTGCTCAAGTTCCA...GTTACAGTCATCTGGCAAATATCTGCTCCTGATATTTAGGAATACTGCAAAGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTTTGCAGTATTCCTAAATATCAGGAGCAGATATTTGCCAGATGACTGTAACGGGCACAATGACTGCTaGCATCTATTTTATGGTACC | + |
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Preference number: 2 (lower is better) Translates to: PFAVFLNIRSRYLPDDCNGHNDC*HLFYGT Trigger: GGTACCATAAAATAGATGCCAGCAGTCATTGTGCCC...GTTACAGTCATCTGGCAAATATCTGCTCCTGATATTTAGGAATACTGCAAAGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | TTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAGACTTATGGGGGTTTCTTGGTaGAGTAGTAATGAATTTCTA | + |
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Preference number: 2 (lower is better) Translates to: LWPGKTGFSVFLWSCSRLMGVSW*SSNEFL Trigger: TAGAAATTCATTACTACTCCACCAAGAAACCCCCAT...AAGTCTACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000076587.6 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | TGCATACCACTATGCATGATTTATCTGACACTGGGAATTAAACTCAGGGCTTCCACACATTGGGTAATATaGATGACAAATCAGGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: CIPLCMIYLTLGIKLRASTHWVI*MTNQVP Trigger: TGGGACCTGATTTGTCATGCATATTACCCAATGTGT...GGAAGCCCTGAGTTTAATTCCCAGTGTCAGATAAATCATGCATAGTGGTATGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGGAGCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATGGATTTCTAATCTCTaGATACCACTATGCATGATT | + |
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Preference number: 2 (lower is better) Translates to: SGADICQMTVTQQIPGLRWISNL*IPLCMI Trigger: AATCATGCATAGTGGTATGCAGAGATTAGAAATCCA...TCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGCTCCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATTACAGATGGGGGTTTCTTGGTaGAGTAGTAATGAATTTCTA | + |
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Preference number: 2 (lower is better) Translates to: ADICQMTVTQQIPGLRLQMGVSW*SSNEFL Trigger: TAGAAATTCATTACTACTCCACCAAGAAACCCCCAT...CTGTAATCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATTACAGTGGATTTCTAATCTCTaGATACCACTATGCATGATT | + |
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Preference number: 2 (lower is better) Translates to: ADICQMTVTQQIPGLRLQWISNL*IPLCMI Trigger: AATCATGCATAGTGGTATGCAGAGATTAGAAATCCA...CTGTAATCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | TCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGATTCACAATTATAAACCTGACGTATTCTaGCATAAGTGTGGGAGATGT | + |
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Preference number: 2 (lower is better) Translates to: SITNCFPSVPNIQLIHNYKPDVF*HKCGRC Trigger: ACATCTCCCACACTTATGCCAGAATACGTCAGGTTT...ATAATTGTGAATCAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | CTTAAAAATGAGAAAACTGGTCTGGAAATTGCAGAGCTACAAGTGACTGATGGAAAACCTGACGTATTCTaGCATAAGTGTGGGAGATGT | + |
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Preference number: 2 (lower is better) Translates to: LKNEKTGLEIAELQVTDGKPDVF*HKCGRC Trigger: ACATCTCCCACACTTATGCCAGAATACGTCAGGTTT...TCCATCAGTCACTTGTAGCTCTGCAATTTCCAGACCAGTTTTCTCATTTTTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | AAATCTAGATCATCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGATGAGAAAACTGGTCTaGAAATTGCAGAGCTACAAG | + |
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Preference number: 2 (lower is better) Translates to: KSRSSITNCFPSVPNIQLMRKLV*KLQSYK Trigger: CTTGTAGCTCTGCAATTTCCAGACCAGTTTTCTCAT...CAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGATGATCTAGATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTTTGCAGTATTCCTAAATATCAGGAGCAGATATTTGCCAGATGACTGTAACAAGGACTCAAGAATGTaGGGTATAAATGTGTACAGC | + |
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Preference number: 2 (lower is better) Translates to: PFAVFLNIRSRYLPDDCNKDSRM*GINVYS Trigger: GCTGTACACATTTATACCCCACATTCTTGAGTCCTT...GTTACAGTCATCTGGCAAATATCTGCTCCTGATATTTAGGAATACTGCAAAGGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | CTTAAAAATGAGAAAACTGGTCTGGAAATTGCAGAGCTACAAGTGACTGATGGAACACATTGGGTAATATaGATGACAAATCAGGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: LKNEKTGLEIAELQVTDGTHWVI*MTNQVP Trigger: TGGGACCTGATTTGTCATGCATATTACCCAATGTGT...TCCATCAGTCACTTGTAGCTCTGCAATTTCCAGACCAGTTTTCTCATTTTTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR GCA 90 bp | CAAAAGGCGTATAAAACATTTCTGCTCAGTTCACTAGCAGATCCATCCCACTTTCCCAAATATAGAGGTTaGAATTCTGTCAAACTTGTG | + |
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Preference number: 2 (lower is better) Translates to: QKAYKTFLLSSLADPSHFPKYRG*NSVKLV Trigger: CACAAGTTTGACAGAATTGCAACCTCTATATTTGGG...AAAGTGGGATGGATCTGCTAGTGAACTGAGCAGAAATGTTTTATACGCCTTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | TGGATTTCTAATCTCTGCATACCACTATGCATGATTTATCTGACACTGGGAATTAAACCTGACGTATTCTaGCATAAGTGTGGGAGATGT | + |
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Preference number: 2 (lower is better) Translates to: WISNLCIPLCMIYLTLGIKPDVF*HKCGRC Trigger: ACATCTCCCACACTTATGCCAGAATACGTCAGGTTT...AATTCCCAGTGTCAGATAAATCATGCATAGTGGTATGCAGAGATTAGAAATCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | TGGATTTCTAATCTCTGCATACCACTATGCATGATTTATCTGACACTGGGAATTCTGGCATCTATTTTATaGTACCTCTTAGTGGAGACG | + |
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Preference number: 2 (lower is better) Translates to: WISNLCIPLCMIYLTLGILASIL*YLLVET Trigger: CGTCTCCACTAAGAGGTACCATAAAATAGATGCCAG...AATTCCCAGTGTCAGATAAATCATGCATAGTGGTATGCAGAGATTAGAAATCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CCA 90 bp | TCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGATTCACAATTATTGCTTGAGTATGAATTaGGAGAAACGGGCAATGAAA | + |
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Preference number: 2 (lower is better) Translates to: SITNCFPSVPNIQLIHNYCLSMN*EKRAMK Trigger: TTTCATTGCCCGTTTCTCCCAATTCATACTCAAGCA...ATAATTGTGAATCAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076587.6 ENSMUST00000233506.2 |
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| 3UTR-3UTR TCA 90 bp | TGGATTTCTAATCTCTGCATACCACTATGCATGATTTATCTGACACTGGGAATTCAAGTCACTTCCATTTaGAGCATTCTCACCAAATTA | + |
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Preference number: 2 (lower is better) Translates to: WISNLCIPLCMIYLTLGIQVTSI*SILTKL Trigger: TAATTTGGTGAGAATGCTTCAAATGGAAGTGACTTG...AATTCCCAGTGTCAGATAAATCATGCATAGTGGTATGCAGAGATTAGAAATCCA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR CCA 72 bp | GCTAGGCTATGGGGCCGGTTATCATTTACAACACTCTaGAACTTGAGCACATGCAATGTGATCACTAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: ARLWGRLSFTTL*NLSTCNVITRQ Trigger: CTGCCTAGTGATCACATTGCATGTGCTCAAGTTCCAGAGTGTTGTAAATGATAACCGGCCCCATAGCCTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAGCAATTCTGTCAAACTaGTGGCCTGGTAAGACTGGT | + |
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Preference number: 3 (lower is better) Translates to: QTCGLVRLVFQYSCGAAVAILSN*WPGKTG Trigger: ACCAGTCTTACCAGGCCACAAGTTTGACAGAATTGC...TACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAAGTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | TCAGGAGCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGAGCAATTCTGTCAAACTaGTGGCCTGGTAAGACTGGT | + |
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Preference number: 3 (lower is better) Translates to: SGADICQMTVTQQIPGLRAILSN*WPGKTG Trigger: ACCAGTCTTACCAGGCCACAAGTTTGACAGAATTGC...TCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGCTCCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | TTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAGACTTCCCACTTTGTCTTTTTaGCAAGAGATTGGGAAGAGG | + |
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Preference number: 3 (lower is better) Translates to: LWPGKTGFSVFLWSCSRLPTLSF*QEIGKR Trigger: CCTCTTCCCAATCTCTTGCAAAAAAGACAAAGTGGG...AAGTCTACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | TTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAGACTTTGTCTGGAGACATTGTaGAAGATATGTGCTTCTGTA | + |
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Preference number: 3 (lower is better) Translates to: LWPGKTGFSVFLWSCSRLCLETL*KICASV Trigger: TACAGAAGCACATATCTTCAACAATGTCTCCAGACA...AAGTCTACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR CCA 72 bp | AGCCCAAATATAGAGGTTGCAATTCTGTCAAACTTGTaGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: SPNIEVAILSNL*PGKTGFSVFLW Trigger: CCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAAGTTTGACAGAATTGCAACCTCTATATTTGGGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | CTTAAAAATGAGAAAACTGGTCTGGAAATTGCAGAGCTACAAGTGACTGATGGAGCAATTCTGTCAAACTaGTGGCCTGGTAAGACTGGT | + |
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Preference number: 3 (lower is better) Translates to: LKNEKTGLEIAELQVTDGAILSN*WPGKTG Trigger: ACCAGTCTTACCAGGCCACAAGTTTGACAGAATTGC...TCCATCAGTCACTTGTAGCTCTGCAATTTCCAGACCAGTTTTCTCATTTTTAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | TCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGATTCACAATTATGCAATTCTGTCAAACTaGTGGCCTGGTAAGACTGGT | + |
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Preference number: 3 (lower is better) Translates to: SITNCFPSVPNIQLIHNYAILSN*WPGKTG Trigger: ACCAGTCTTACCAGGCCACAAGTTTGACAGAATTGC...ATAATTGTGAATCAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAACCAGCAAAAATCTTTaGCTAAGTGTCCAAACATGT | + |
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Preference number: 3 (lower is better) Translates to: QTCGLVRLVFQYSCGAAVTSKNL*LSVQTC Trigger: ACATGTTTGGACACTTAGCAAAAGATTTTTGCTGGT...TACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAAGTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | TTGTGGCCTGGTAAGACTGGTTTTTCAGTATTCCTGTGGAGCTGCAGTAGACTTTTTTGTCTGGAGACATaGTTGAAGATATGTGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: LWPGKTGFSVFLWSCSRLFCLET*LKICAS Trigger: AGAAGCACATATCTTCAACAATGTCTCCAGACAAAA...AAGTCTACTGCAGCTCCACAGGAATACTGAAAAACCAGTCTTACCAGGCCACAA 42% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | TCAGGAGCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATTTTGTCTGGAGACATaGTTGAAGATATGTGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: SGADICQMTVTQQIPGLRFCLET*LKICAS Trigger: AGAAGCACATATCTTCAACAATGTCTCCAGACAAAA...TCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGCTCCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | AAATCTAGATCATCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGCCCACTTTGTCTTTTTaGCAAGAGATTGGGAAGAGG | + |
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Preference number: 3 (lower is better) Translates to: KSRSSITNCFPSVPNIQLPTLSF*QEIGKR Trigger: CCTCTTCCCAATCTCTTGCAAAAAAGACAAAGTGGG...CAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGATGATCTAGATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | TCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGATTCACAATTATTCCAGGTCTGAGCTCTaGTCAAATGCTCTGCAGATT | + |
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Preference number: 3 (lower is better) Translates to: SITNCFPSVPNIQLIHNYSRSEL*SNALQI Trigger: AATCTGCAGAGCATTTGACAAGAGCTCAGACCTGGA...ATAATTGTGAATCAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076587.6 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | TCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGATTCACAATTATCCCACTTTGTCTTTTTaGCAAGAGATTGGGAAGAGG | + |
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Preference number: 3 (lower is better) Translates to: SITNCFPSVPNIQLIHNYPTLSF*QEIGKR Trigger: CCTCTTCCCAATCTCTTGCAAAAAAGACAAAGTGGG...ATAATTGTGAATCAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | CAAAAGGCGTATAAAACATTTCTGCTCAGTTCACTAGCAGATCCATCCCACTTTTGTCTGGAGACATTGTaGAAGATATGTGCTTCTGTA | + |
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Preference number: 3 (lower is better) Translates to: QKAYKTFLLSSLADPSHFCLETL*KICASV Trigger: TACAGAAGCACATATCTTCAACAATGTCTCCAGACA...AAAGTGGGATGGATCTGCTAGTGAACTGAGCAGAAATGTTTTATACGCCTTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | AAATCTAGATCATCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGTGTCTGGAGACATTGTaGAAGATATGTGCTTCTGTA | + |
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Preference number: 3 (lower is better) Translates to: KSRSSITNCFPSVPNIQLCLETL*KICASV Trigger: TACAGAAGCACATATCTTCAACAATGTCTCCAGACA...CAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGATGATCTAGATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | AAATCTAGATCATCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGTTTTGTCTGGAGACATaGTTGAAGATATGTGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: KSRSSITNCFPSVPNIQLFCLET*LKICAS Trigger: AGAAGCACATATCTTCAACAATGTCTCCAGACAAAA...CAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGATGATCTAGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027232.15 ENSMUST00000076587.6 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | CCCTTTGCAGTATTCCTAAATATCAGGAGCAGATATTTGCCAGATGACTGTAACTTTTGTCTGGAGACATaGTTGAAGATATGTGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: PFAVFLNIRSRYLPDDCNFCLET*LKICAS Trigger: AGAAGCACATATCTTCAACAATGTCTCCAGACAAAA...GTTACAGTCATCTGGCAAATATCTGCTCCTGATATTTAGGAATACTGCAAAGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR TCA 72 bp | CAGGGCTTCCTGTGTGCTAGGCAAGCATTCATTCACTaGGCTATATATATATATATATATATACCCCAACCT | + |
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Preference number: 3 (lower is better) Translates to: QGFLCARQAFIH*AIYIYIYIPQP Trigger: AGGTTGGGGTATATATATATATATATATATAGCTCAGTGAATGAATGCTTGCCTAGCACACAGGAAGCCCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| 3UTR-3UTR CAA 90 bp | TGGATTTCTAATCTCTGCATACCACTATGCATGATTTATCTGACACTGGGAATTCCAAGTCACTTCCATTaGAAGCATTCTCACCAAATT | + |
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Preference number: 3 (lower is better) Translates to: WISNLCIPLCMIYLTLGIPSHFH*KHSHQI Trigger: AATTTGGTGAGAATGCTTCAAATGGAAGTGACTTGG...AATTCCCAGTGTCAGATAAATCATGCATAGTGGTATGCAGAGATTAGAAATCCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| CDS-3UTR GCA 90 bp | GCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGATTACAGCAAGCACCGGAGCTCTaGCAAGGCCTGCGACACAAT | + |
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Preference number: 4 (lower is better) Translates to: ADICQMTVTQQIPGLRLQQAPEL*QGLRHN Trigger: ATTGTGTCGCAGGCCTTGGCAGAGCTCCGGTGCTTG...CTGTAATCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 |
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| CDS-3UTR GCA 90 bp | TGGGGCCGGTTATCATTTACAACACTCTGGAACTTGAGCACATGCAATGTGATCAGCTCTGCCAAGGCCTaGGACACAATGGACAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: WGRLSFTTLWNLSTCNVISSAKA*DTMDSN Trigger: ATTGCTGTCCATTGTGTCGCAGGCCTTGGCAGAGCT...GATCACATTGCATGTGCTCAAGTTCCAGAGTGTTGTAAATGATAACCGGCCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 |
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| CDS-3UTR CCA 90 bp | TCAGGAGCAGATATTTGCCAGATGACTGTAACACAACAGATCCCAGGATTGCGAAGGCCTGCGACACAATaGACAGCAATACAGCAACCA | + |
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Preference number: 4 (lower is better) Translates to: SGADICQMTVTQQIPGLRRPATQ*TAIQQP Trigger: TGGTTGCTGTATTGCTGTCCATTGTGTCGCAGGCCT...TCGCAATCCTGGGATCTGTTGTGTTACAGTCATCTGGCAAATATCTGCTCCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 |
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| CDS-3UTR GCA 90 bp | CTTAAAAATGAGAAAACTGGTCTGGAAATTGCAGAGCTACAAGTGACTGATGGACAAGCACCGGAGCTCTaGCAAGGCCTGCGACACAAT | + |
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Preference number: 4 (lower is better) Translates to: LKNEKTGLEIAELQVTDGQAPEL*QGLRHN Trigger: ATTGTGTCGCAGGCCTTGGCAGAGCTCCGGTGCTTG...TCCATCAGTCACTTGTAGCTCTGCAATTTCCAGACCAGTTTTCTCATTTTTAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 |
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| 3UTR CAA 72 bp | CTATGGGGCCGGTTATCATTTACAACACTCTGGAACTaGAGCACATGCAATGTGATCACTAGGCAGGCAGTT | + |
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Preference number: 4 (lower is better) Translates to: LWGRLSFTTLWN*STCNVITRQAV Trigger: AACTGCCTGCCTAGTGATCACATTGCATGTGCTCAAGTTCCAGAGTGTTGTAAATGATAACCGGCCCCATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 ENSMUST00000233506.2 |
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| CDS-3UTR GCA 90 bp | CCCTTTGCAGTATTCCTAAATATCAGGAGCAGATATTTGCCAGATGACTGTAACAGCTCTGCCAAGGCCTaGGACACAATGGACAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: PFAVFLNIRSRYLPDDCNSSAKA*DTMDSN Trigger: ATTGCTGTCCATTGTGTCGCAGGCCTTGGCAGAGCT...GTTACAGTCATCTGGCAAATATCTGCTCCTGATATTTAGGAATACTGCAAAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 |
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| CDS-3UTR CCA 90 bp | AAATCTAGATCATCTATTACAAACTGTTTCCCCTCGGTGCCCAACATTCAACTGAGGCCTGCGACACAATaGACAGCAATACAGCAACCA | + |
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Preference number: 4 (lower is better) Translates to: KSRSSITNCFPSVPNIQLRPATQ*TAIQQP Trigger: TGGTTGCTGTATTGCTGTCCATTGTGTCGCAGGCCT...CAGTTGAATGTTGGGCACCGAGGGGAAACAGTTTGTAATAGATGATCTAGATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027232.15 ENSMUST00000232841.2 |
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