Pregenerated sensors for PTOV1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038502Ensembl transcript IDs: ENSMUST00000046575.17, ENSMUST00000207416.2, ENSMUST00000208410.2, ENSMUST00000208682.2, ENSMUST00000209018.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTCTCAGGCCAGGGCCACCCTGCTGCTTCCCACGGACACAGTGCTaGTCACCAGTCTCCACTGGGGCCTCGTCTGGGACTGTGGCCCGC | + |
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Preference number: 1 (lower is better) Translates to: SLRPGPPCCFPRTQC*SPVSTGASSGTVAR Trigger: GCGGGCCACAGTCCCAGACGAGGCCCCAGTGGAGACTGGTGAGCAGCACTGTGTCCGTGGGAAGCAGCAGGGTGGCCCTGGCCTGAGAGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| 3UTR-3UTR CCA 90 bp | TCCCCAGGGATATTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTCTCTCACCTCGTCTGGGACTGTaGCCCGCCCAGCCCAGGCAT | + |
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Preference number: 2 (lower is better) Translates to: SPGILVAGGSDACSRSLSPRLGL*PAQPRH Trigger: ATGCCTGGGCTGGGCGGGCCACAGTCCCAGACGAGG...TGAGAGAGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| 3UTR-3UTR GCA 90 bp | CATTCCTCCCCAGGGATATTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTCCAGGGCCACCCTGCTaGTTCCCACGGACACAGTGC | + |
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Preference number: 2 (lower is better) Translates to: HSSPGILVAGGSDACSRSPGPPC*FPRTQC Trigger: GCACTGTGTCCGTGGGAAGCAGCAGGGTGGCCCTGG...AGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGAGGAATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| 3UTR-3UTR GCA 90 bp | GGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCCTCGTCGCCAGGAGCCCCTaGTCAGAAGCAGCTGACCAG | + |
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Preference number: 2 (lower is better) Translates to: GKHTGARTILGRPQDAVLVARSP*SEAADQ Trigger: CTGGTCAGCTGCTTCTGAGCAGGGGCTCCTGGCGAC...GAGGACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207416.2 |
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| 3UTR CAA 90 bp | CCAGTATTAAGCTGTGGCCCTGGCACCCATTCCTCCCCAGGGATATaGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTCTCTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: PVLSCGPGTHSSPGI*VAGGSDACSRSLSG Trigger: GCCTGAGAGAGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGAGGAATGGGTGCCAGGGCCACAGCTTAATACTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| 3UTR CCA 72 bp | CTTCCCACGGACACAGTGCTGCTCACCAGTCTCCACTaGGGCCTCGTCTGGGACTGTGGCCCGCCCAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: LPTDTVLLTSLH*GLVWDCGPPSP Trigger: TGGGCTGGGCGGGCCACAGTCCCAGACGAGGCCCCAGTGGAGACTGGTGAGCAGCACTGTGTCCGTGGGAAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| 3UTR TCA 72 bp | CCATTCCTCCCCAGGGATATTGGTAGCAGGAGGCAGTaGCGCATGCAGCAGGTCTCTCTCAGGCCAGGGCCA | + |
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Preference number: 3 (lower is better) Translates to: PFLPRDIGSRRQ*RMQQVSLRPGP Trigger: TGGCCCTGGCCTGAGAGAGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGAGGAATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR GCA 90 bp | CCCTGCTGCTTCCCACGGACACAGTGCTGCTCACCAGTCTCCACTGGGGCCTCGCGGATCCGCGGTGGCTaGGGGCCTCGAGGACCGCCA | + |
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Preference number: 4 (lower is better) Translates to: PCCFPRTQCCSPVSTGASRIRGG*GPRGPP Trigger: TGGCGGTCCTCGAGGCCCGCAGCCACCGCGGATCCG...CGAGGCCCCAGTGGAGACTGGTGAGCAGCACTGTGTCCGTGGGAAGCAGCAGGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR GCA 90 bp | CAGCTGACCAGTCTCCACTGGGGCCTCGTCTGGGACTGTGGCCCGCCCAGCCCACGCTGCTGCTGCTCCTaGTCCAGGCTTCGCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: QLTSLHWGLVWDCGPPSPRCCCS*SRLRCR Trigger: CCTGCAGCGAAGCCTGGAGCAGGAGCAGCAGCAGCG...TGGGCTGGGCGGGCCACAGTCCCAGACGAGGCCCCAGTGGAGACTGGTCAGCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207416.2 |
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| CDS-3UTR GCA 90 bp | CAGAAGCAGCTGACCAGTCTCCACTGGGGCCTCGTCTGGGACTGTGGCCCGCCCCTTCGCTGCAGGACCTaGTGCTGGTTGGCGATGACG | + |
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Preference number: 4 (lower is better) Translates to: QKQLTSLHWGLVWDCGPPLRCRT*CWLAMT Trigger: CGTCATCGCCAACCAGCAGCAGGTCCTGCAGCGAAG...GGGCGGGCCACAGTCCCAGACGAGGCCCCAGTGGAGACTGGTCAGCTGCTTCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207416.2 |
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| CDS-3UTR GCA 90 bp | GGGCCACCCTGCTGCTTCCCACGGACACAGTGCTGCTCACCAGTCTCCACTGGGATCCCTCGCTGCTGCTaGTCCTGCTCCAGGCTTCGC | + |
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Preference number: 4 (lower is better) Translates to: GPPCCFPRTQCCSPVSTGIPRCC*SCSRLR Trigger: GCGAAGCCTGGAGCAGGAGCAGCAGCAGCGAGGGAT...CCCAGTGGAGACTGGTGAGCAGCACTGTGTCCGTGGGAAGCAGCAGGGTGGCCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR CCA 90 bp | TCCTCCCCAGGGATATTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTCTCAGCCCGGATCCGCGGTaGCTGCGGGCCTCGAGGACC | + |
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Preference number: 4 (lower is better) Translates to: SSPGILVAGGSDACSRSLSPDPR*LRASRT Trigger: GGTCCTCGAGGCCCGCAGCCACCGCGGATCCGGGCT...GAGAGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGAGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR CCA 90 bp | CAGCTGACCAGTCTCCACTGGGGCCTCGTCTGGGACTGTGGCCCGCCCAGCCCAAGCCTCCGAGGCCACTaGTCTGTTCTCAGGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: QLTSLHWGLVWDCGPPSPSLRGH*SVLRIS Trigger: GGAGATCCTGAGAACAGACCAGTGGCCTCGGAGGCT...TGGGCTGGGCGGGCCACAGTCCCAGACGAGGCCCCAGTGGAGACTGGTCAGCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207416.2 |
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| CDS-3UTR GCA 90 bp | CAGCTGACCAGTCTCCACTGGGGCCTCGTCTGGGACTGTGGCCCGCCCAGCCCAAGGGTGGTCAGCAACTaGTGCGGAATGAGCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: QLTSLHWGLVWDCGPPSPRVVSN*CGMSCM Trigger: CATGCAGCTCATTCCGCAGCAGTTGCTGACCACCCT...TGGGCTGGGCGGGCCACAGTCCCAGACGAGGCCCCAGTGGAGACTGGTCAGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207416.2 |
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| CDS-3UTR GCA 90 bp | TTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTCTCTCAGGCCAGGGCCACCGCTGCTGCTGCTCCTaGTCCAGGCTTCGCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LVAGGSDACSRSLSGQGHRCCCS*SRLRCR Trigger: CCTGCAGCGAAGCCTGGAGCAGGAGCAGCAGCAGCG...GTGGCCCTGGCCTGAGAGAGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR GCA 90 bp | GGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCCTCCAGGTTGCTGGGCGGTCTACGCTTCTCCTaGCACTCCAGCACGCCACTC | + |
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Preference number: 4 (lower is better) Translates to: GQGPSLGDLRTLSSRLLGGLRFS*HSSTPL Trigger: GAGTGGCGTGCTGGAGTGGCAGGAGAAGCGTAGACC...GCCCAGCAACCTGGAGGACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR GCA 90 bp | GGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCCTCCAGGTTGCTGGGCTGCTCCAGGCTTCGCTaGAGGACCTGCTGCTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: GQGPSLGDLRTLSSRLLGCSRLR*RTCCWL Trigger: CAACCAGCAGCAGGTCCTGCAGCGAAGCCTGGAGCA...GCCCAGCAACCTGGAGGACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR TCA 90 bp | CCAGGGCCACCCTGCTGCTTCCCACGGACACAGTGCTGCTCACCAGTCTCCACTCGCGACGGATGCCGTTaGCAAAGTTGCTCTGGTCGT | + |
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Preference number: 4 (lower is better) Translates to: PGPPCCFPRTQCCSPVSTRDGCR*QSCSGR Trigger: ACGACCAGAGCAACTTTGTCAACGGCATCCGTCGCG...AGTGGAGACTGGTGAGCAGCACTGTGTCCGTGGGAAGCAGCAGGGTGGCCCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR TCA 90 bp | GGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCCTCCAGGTTGCTGGGCCGCGACGGATGCCGTTaGCAAAGTTGCTCTGGTCGT | + |
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Preference number: 4 (lower is better) Translates to: GQGPSLGDLRTLSSRLLGRDGCR*QSCSGR Trigger: ACGACCAGAGCAACTTTGTCAACGGCATCCGTCGCG...GCCCAGCAACCTGGAGGACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR CCA 90 bp | CCAGGGCCACCCTGCTGCTTCCCACGGACACAGTGCTGCTCACCAGTCTCCACTAACTTCTGGGGCCACTaGTCCGTCTCCAGGTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: PGPPCCFPRTQCCSPVSTNFWGH*SVSRFS Trigger: CGAGAACCTGGAGACGGACCAGTGGCCCCAGAAGTT...AGTGGAGACTGGTGAGCAGCACTGTGTCCGTGGGAAGCAGCAGGGTGGCCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR TCA 90 bp | GGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCCTCCAGGTTGCTGGGCGAACTGTACCAGGCGTaGATTCCGGAACAGTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: GQGPSLGDLRTLSSRLLGELYQA*IPEQWH Trigger: GTGCCACTGTTCCGGAATTCACGCCTGGTACAGTTC...GCCCAGCAACCTGGAGGACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR GCA 90 bp | GGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCCTCCAGGTTGCTGGGCAGGGTGGTCAGCAACTaGTGCGGAATGAGCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: GQGPSLGDLRTLSSRLLGRVVSN*CGMSCM Trigger: CATGCAGCTCATTCCGCAGCAGTTGCTGACCACCCT...GCCCAGCAACCTGGAGGACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR CCA 90 bp | TTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTCTCTCAGGCCAGGGCCACAGCCTCCGAGGCCACTaGTCTGTTCTCAGGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: LVAGGSDACSRSLSGQGHSLRGH*SVLRIS Trigger: GGAGATCCTGAGAACAGACCAGTGGCCTCGGAGGCT...GTGGCCCTGGCCTGAGAGAGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| 3UTR CAA 72 bp | AGCTGTGGCCCTGGCACCCATTCCTCCCCAGGGATATaGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: SCGPGTHSSPGI*VAGGSDACSRS Trigger: AGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGAGGAATGGGTGCCAGGGCCACAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR GCA 90 bp | TCCTCCCCAGGGATATTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTCTCCTTCGCTGCAGGACCTaGTGCTGGTTGGCGATGACG | + |
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Preference number: 4 (lower is better) Translates to: SSPGILVAGGSDACSRSLLRCRT*CWLAMT Trigger: CGTCATCGCCAACCAGCAGCAGGTCCTGCAGCGAAG...GAGAGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR CCA 90 bp | GGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCCTCCAGGTTGCTGGGCGTTTCAGCTTGGCTGTaGAGTCCGAGAAGGGTCTAC | + |
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Preference number: 4 (lower is better) Translates to: GQGPSLGDLRTLSSRLLGVSAWL*SPRRVY Trigger: GTAGACCCTTCTCGGACTCCACAGCCAAGCTGAAAC...GCCCAGCAACCTGGAGGACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR CCA 90 bp | TTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTCTCTCAGGCCAGGGCCACTGCATGATCAACTTCTaGGGCCACTGGTCCGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LVAGGSDACSRSLSGQGHCMINF*GHWSVS Trigger: GGAGACGGACCAGTGGCCCCAGAAGTTGATCATGCA...GTGGCCCTGGCCTGAGAGAGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR CCA 90 bp | CCAGGGCCACCCTGCTGCTTCCCACGGACACAGTGCTGCTCACCAGTCTCCACTTCGCAAGGAGAAATGTaGGGGAAGAGCATGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: PGPPCCFPRTQCCSPVSTSQGEM*GKSMQP Trigger: AGGCTGCATGCTCTTCCCCCACATTTCTCCTTGCGA...AGTGGAGACTGGTGAGCAGCACTGTGTCCGTGGGAAGCAGCAGGGTGGCCCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR GCA 90 bp | TTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCCGCTGCAGGACCTGCTaGTGGTTGGCGATGACGCGA | + |
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Preference number: 4 (lower is better) Translates to: LGKHTGARTILGRPQDAVRCRTC*WLAMTR Trigger: TCGCGTCATCGCCAACCAGCAGCAGGTCCTGCAGCG...GACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR GCA 90 bp | TTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCATCCCTCGCTGCTGCTaGTCCTGCTCCAGGCTTCGC | + |
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Preference number: 4 (lower is better) Translates to: LGKHTGARTILGRPQDAVIPRCC*SCSRLR Trigger: GCGAAGCCTGGAGCAGGAGCAGCAGCAGCGAGGGAT...GACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR TCA 90 bp | CATTCCTCCCCAGGGATATTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTGCTCCTGCCACTCCATaGCACCACTCCATGCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: HSSPGILVAGGSDACSRSAPATP*HHSMPR Trigger: TCTTGGCATGGAGTGGTGTCATGGAGTGGCAGGAGC...AGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGAGGAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR CCA 90 bp | ATTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTTGCAGGACCTGCTGCTaGTTGGCGATGACGCGACGG | + |
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Preference number: 4 (lower is better) Translates to: IRETYRGKDHPWETSGRCCRTCC*LAMTRR Trigger: CCGTCGCGTCATCGCCAACCAGCAGCAGGTCCTGCA...ACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR GCA 90 bp | GCTTTATTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACCGCTGCAGGACCTGCTaGTGGTTGGCGATGACGCGA | + |
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Preference number: 4 (lower is better) Translates to: ALLGKHTGARTILGRPQDRCRTC*WLAMTR Trigger: TCGCGTCATCGCCAACCAGCAGCAGGTCCTGCAGCG...GTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAATAAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR CCA 90 bp | GCTTTATTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACTGCAGGACCTGCTGCTaGTTGGCGATGACGCGACGG | + |
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Preference number: 4 (lower is better) Translates to: ALLGKHTGARTILGRPQDCRTCC*LAMTRR Trigger: CCGTCGCGTCATCGCCAACCAGCAGCAGGTCCTGCA...GTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAATAAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR TCA 90 bp | GCTTTATTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACTGCGGCAGAGGCCCTTaGGGGAGTCACAGTCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: ALLGKHTGARTILGRPQDCGRGP*GSHSLC Trigger: ACAGAGACTGTGACTCCCTCAAGGGCCTCTGCCGCA...GTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAATAAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR GCA 90 bp | GCTTTATTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACTGCTCCAGGCTTCGCTaGAGGACCTGCTGCTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: ALLGKHTGARTILGRPQDCSRLR*RTCCWL Trigger: CAACCAGCAGCAGGTCCTGCAGCGAAGCCTGGAGCA...GTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAATAAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR TCA 90 bp | ATTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCACAGTCTCTGTTGGTaGAGTGGAACTGGGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: IRETYRGKDHPWETSGRCHSLCW*SGTGPA Trigger: AGCTGGCCCAGTTCCACTTCACCAACAGAGACTGTG...ACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR GCA 90 bp | TTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCGAAGAGCATGCAGCCTaGGAAGCCATTGCCCATGAT | + |
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Preference number: 4 (lower is better) Translates to: LGKHTGARTILGRPQDAVEEHAA*EAIAHD Trigger: ATCATGGGCAATGGCTTCGCAGGCTGCATGCTCTTC...GACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR TCA 90 bp | GCTTTATTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACGAACTGTACCAGGCGTaGATTCCGGAACAGTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: ALLGKHTGARTILGRPQDELYQA*IPEQWH Trigger: GTGCCACTGTTCCGGAATTCACGCCTGGTACAGTTC...GTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAATAAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS-3UTR CAA 90 bp | TCCCCAGGGATATTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTCTCTCAGGGCCCACGGCCTGTTaGCGGGTGGTGATGACCTGT | + |
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Preference number: 5 (lower is better) Translates to: SPGILVAGGSDACSRSLSGPTAC*RVVMTC Trigger: ACAGGTCATCACCACCCGCAAACAGGCCGTGGGCCC...TGAGAGAGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR CAA 90 bp | CATTCCTCCCCAGGGATATTGGTAGCAGGAGGCAGTGACGCATGCAGCAGGTCTACGCGACGGATGCCGTaGACAAAGTTGCTCTGGTCG | + |
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Preference number: 5 (lower is better) Translates to: HSSPGILVAGGSDACSRSTRRMP*TKLLWS Trigger: CGACCAGAGCAACTTTGTCAACGGCATCCGTCGCGT...AGACCTGCTGCATGCGTCACTGCCTCCTGCTACCAATATCCCTGGGGAGGAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR CAA 90 bp | TTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACGCTGTCAGGGTGCGTTTCAGCTaGGCTGTGGAGTCCGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: LGKHTGARTILGRPQDAVRVRFS*AVESEK Trigger: CTTCTCGGACTCCACAGCCAAGCTGAAACGCACCCT...GACAGCGTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046575.17 |
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| CDS-3UTR CAA 90 bp | GCTTTATTAGGGAAACATACAGGGGCAAGGACCATCCTTGGGAGACCTCAGGACACGCGACGGATGCCGTaGACAAAGTTGCTCTGGTCG | + |
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Preference number: 5 (lower is better) Translates to: ALLGKHTGARTILGRPQDTRRMP*TKLLWS Trigger: CGACCAGAGCAACTTTGTCAACGGCATCCGTCGCGT...GTCCTGAGGTCTCCCAAGGATGGTCCTTGCCCCTGTATGTTTCCCTAATAAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000207416.2 |
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| CDS CCA 72 bp | TCACATAGGCCTGGCAGGGCAGGGTGCGTTTCAGCTTaGCTGTGGAGTCCGAGAAGGGTCTACGCTTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: SHRPGRAGCVSA*LWSPRRVYASP Trigger: AGGAGAAGCGTAGACCCTTCTCGGACTCCACAGCCAAGCTGAAACGCACCCTGCCCTGCCAGGCCTATGTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046575.17 ENSMUST00000208682.2 |
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| CDS CAA 72 bp | ACCTGCTGCTGGTTGGCGATGACGCGACGGATGCCGTaGACAAAGTTGCTGAAGCCATTGTCCATGATCCGG | + |
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Preference number: 6 (lower is better) Translates to: TCCWLAMTRRMP*TKLLKPLSMIR Trigger: CCGGATCATGGACAATGGCTTCAGCAACTTTGTCAACGGCATCCGTCGCGTCATCGCCAACCAGCAGCAGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000208410.2 ENSMUST00000209018.2 |
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