Pregenerated sensors for PTMS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030122

Ensembl transcript IDs: ENSMUST00000032216.7

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	CGGGGTGTAGAGGGCAAGGAGAGGCTTCGCAGGGACCGGAACATATaGGATGGTGAGGGAAGGCAGGAAAGAAGAACAAGAATGCTAGGG	+
Preference number: 1 (lower is better) Translates to: RGVEGKERLRRDRNI*DGEGRQERRTRMLG Trigger: CCCTAGCATTCTTGTTCTTCTTTCCTGCCTTCCCTCACCATCCCATATGTTCCGGTCCCTGCGAAGCCTCTCCTTGCCCTCTACACCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032216.7
3UTR TCA 90 bp	AGAGGGCAAGGAGAGGCTTCGCAGGGACCGGAACATATGGGATGGTaGGGGAAGGCAGGAAAGAAGAACAAGAATGCTAGGGCAAGTGAG	+
Preference number: 1 (lower is better) Translates to: RGQGEASQGPEHMGW*GKAGKKNKNARASE Trigger: CTCACTTGCCCTAGCATTCTTGTTCTTCTTTCCTGCCTTCCCTCACCATCCCATATGTTCCGGTCCCTGCGAAGCCTCTCCTTGCCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032216.7
3UTR-3UTR CCA 90 bp	TCGGGGTGTAGAGGGCAAGGAGAGGCTTCGCAGGGACCGGAACATATGGGATGGCAAGTGAGGGCTGGCTaGGGAGCTCAGATGAGGCGG	+
Preference number: 2 (lower is better) Translates to: SGCRGQGEASQGPEHMGWQVRAG*GAQMRR Trigger: CCGCCTCATCTGAGCTCCCCAGCCAGCCCTCACTTG...CCATCCCATATGTTCCGGTCCCTGCGAAGCCTCTCCTTGCCCTCTACACCCCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032216.7
3UTR-3UTR CCA 90 bp	TCGGGGTGTAGAGGGCAAGGAGAGGCTTCGCAGGGACCGGAACATATGGGATGGCAGGAGAAAGGGGGCTaGATTTGTGTGTTCCCGCCC	+
Preference number: 2 (lower is better) Translates to: SGCRGQGEASQGPEHMGWQEKGG*ICVFPP Trigger: GGGCGGGAACACACAAATCCAGCCCCCTTTCTCCTG...CCATCCCATATGTTCCGGTCCCTGCGAAGCCTCTCCTTGCCCTCTACACCCCGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032216.7
3UTR-3UTR TCA 90 bp	TCGGGGTGTAGAGGGCAAGGAGAGGCTTCGCAGGGACCGGAACATATGGGATGGCTGGAGAGATGGAAATaGGAGGCTGGGTCAAAGGAC	+
Preference number: 2 (lower is better) Translates to: SGCRGQGEASQGPEHMGWLERWK*EAGSKD Trigger: GTCCTTTGACCCAGCCTCTCATTTCCATCTCTCCAG...CCATCCCATATGTTCCGGTCCCTGCGAAGCCTCTCCTTGCCCTCTACACCCCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032216.7
3UTR-3UTR CCA 90 bp	CAGATGAGGCGGGTCAGGAGCTGGACCGGTGGCAGTGAGGGTGAAGGAGCAGTGATGGAAATGAGAGGCTaGGTCAAAGGACAAGGGTCA	+
Preference number: 2 (lower is better) Translates to: QMRRVRSWTGGSEGEGAVMEMRG*VKGQGS Trigger: TGACCCTTGTCCTTTGACCCAGCCTCTCATTTCCAT...CACTGCTCCTTCACCCTCACTGCCACCGGTCCAGCTCCTGACCCGCCTCATCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032216.7
CDS-3UTR GCA 90 bp	TCGGGGTGTAGAGGGCAAGGAGAGGCTTCGCAGGGACCGGAACATATGGGATGGCTGCCTCTTGGGGTCTaGTTCATCCTCCTCTTCAGC	+
Preference number: 4 (lower is better) Translates to: SGCRGQGEASQGPEHMGWLPLGV*FILLFS Trigger: GCTGAAGAGGAGGATGAAGCAGACCCCAAGAGGCAG...CCATCCCATATGTTCCGGTCCCTGCGAAGCCTCTCCTTGCCCTCTACACCCCGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032216.7
CDS-3UTR GCA 90 bp	CAGATGAGGCGGGTCAGGAGCTGGACCGGTGGCAGTGAGGGTGAAGGAGCAGTGATCCTCTCCATCCTCTaGAGTTTCTTCTTCCTCTTC	+
Preference number: 4 (lower is better) Translates to: QMRRVRSWTGGSEGEGAVILSIL*SFFFLF Trigger: GAAGAGGAAGAAGAAACTGCAGAGGATGGAGAGGAT...CACTGCTCCTTCACCCTCACTGCCACCGGTCCAGCTCCTGACCCGCCTCATCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032216.7
CDS-3UTR GCA 90 bp	TCGGGGTGTAGAGGGCAAGGAGAGGCTTCGCAGGGACCGGAACATATGGGATGGCCGTTTTCTGTCTTCTaGCTCTTGGGGTCTGCTTCA	+
Preference number: 4 (lower is better) Translates to: SGCRGQGEASQGPEHMGWPFSVF*LLGSAS Trigger: TGAAGCAGACCCCAAGAGGCAGAAGACAGAAAACGG...CCATCCCATATGTTCCGGTCCCTGCGAAGCCTCTCCTTGCCCTCTACACCCCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032216.7
CDS CAA 90 bp	ACTACTTCTTTCTTCCGTTCTTTCCGGCCGGCCTTCTCCTCCACCTaGTCCTTCTTTTCTTTCAGGTCCTTGGCACTCAGCTCGGCCGCT	+
Preference number: 6 (lower is better) Translates to: TTSFFRSFRPAFSST*SFFSFRSLALSSAA Trigger: AGCGGCCGAGCTGAGTGCCAAGGACCTGAAAGAAAAGAAGGACAAGGTGGAGGAGAAGGCCGGCCGGAAAGAACGGAAGAAAGAAGTAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032216.7