Pregenerated sensors for PTMA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026238Ensembl transcript IDs: ENSMUST00000188699.7
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGAGGGCGGAGGTGGGACCATGCTTGCTACAAAGTGTTACAGCGGTaGCGGGCATCGCTCCAGAGCGCGCTCTGCACGGGGTCGCACCAG | + |
|
Preference number: 5 (lower is better) Translates to: RGRRWDHACYKVLQR*RASLQSALCTGSHQ Trigger: CTGGTGCGACCCCGTGCAGAGCGCGCTCTGGAGCGATGCCCGCCACCGCTGTAACACTTTGTAGCAAGCATGGTCCCACCTCCGCCCTCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188699.7 |
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| CDS CAA 72 bp | CTGAGACTCCCGCCGAGGGCGGAGGTGGGACCATGCTaGCTACAAAGTGTTACAGCGGTGGCGGGCATCGCT | + |
|
Preference number: 6 (lower is better) Translates to: LRLPPRAEVGPC*LQSVTAVAGIA Trigger: AGCGATGCCCGCCACCGCTGTAACACTTTGTAGCAAGCATGGTCCCACCTCCGCCCTCGGCGGGAGTCTCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188699.7 |
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| CDS TCA 72 bp | TCAGAAACCCTTCTTGGAAGGCAGTGGCTGTGTGCCTaGGACTCCCGCCGAGGGCGGAGGTGGGACCATGCT | + |
|
Preference number: 6 (lower is better) Translates to: SETLLGRQWLCA*DSRRGRRWDHA Trigger: AGCATGGTCCCACCTCCGCCCTCGGCGGGAGTCTCAGGCACACAGCCACTGCCTTCCAAGAAGGGTTTCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188699.7 |
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| CDS CCA 72 bp | CAGCTAGAGGGAGCTCCACCCCTCAGAAACCCTTCTTaGAAGGCAGTGGCTGTGTGCCTGAGACTCCCGCCG | + |
|
Preference number: 6 (lower is better) Translates to: QLEGAPPLRNPS*KAVAVCLRLPP Trigger: CGGCGGGAGTCTCAGGCACACAGCCACTGCCTTCCAAGAAGGGTTTCTGAGGGGTGGAGCTCCCTCTAGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188699.7 |
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| CDS CAA 72 bp | CCAGCTAGAGGGAGCTCCACCCCTCAGAAACCCTTCTaGGAAGGCAGTGGCTGTGTGCCTGAGACTCCCGCC | + |
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Preference number: 6 (lower is better) Translates to: PARGSSTPQKPF*EGSGCVPETPA Trigger: GGCGGGAGTCTCAGGCACACAGCCACTGCCTTCCAAGAAGGGTTTCTGAGGGGTGGAGCTCCCTCTAGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188699.7 |
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