RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTK2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022607

Ensembl transcript IDs: ENSMUST00000110036.11, ENSMUST00000226466.2, ENSMUST00000226791.2, ENSMUST00000226988.3, ENSMUST00000227395.2, ENSMUST00000227686.2, ENSMUST00000228180.3, ENSMUST00000239146.2

Found 432 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCCGTGAGCACGGGCTACAGAGGCTAAGGTTACTTCCTCGCTGCTaGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCCACGT +
Preference number: 1 (lower is better)
Translates to: SREHGLQRLRLLPRC*WNAREDLPKGRKPR
Trigger: ACGTGGCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAACCTTAGCCTCTGTAGCCCGTGCTCACGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR CCA 90 bp CGTGAGCACGGGCTACAGAGGCTAAGGTTACTTCCTCGCTGCTGGTaGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCCACGTTCA +
Preference number: 1 (lower is better)
Translates to: REHGLQRLRLLPRCW*NAREDLPKGRKPRS
Trigger: TGAACGTGGCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAACCTTAGCCTCTGTAGCCCGTGCTCACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR TCA 90 bp ATCCCTGTTTGTCCTGCGGGGTCCTCCCTGGGAAGACAGACGCAATaGAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGGCTTT +
Preference number: 1 (lower is better)
Translates to: IPVCPAGSSLGRQTQ*RSVSSSGCKSQHGF
Trigger: AAAGCCATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTCCCAGGGAGGACCCCGCAGGACAAACAGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR CCA 90 bp CATCTAAAGAAAACCACATCCCTGTTTGTCCTGCGGGGTCCTCCCTaGGAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTA +
Preference number: 1 (lower is better)
Translates to: HLKKTTSLFVLRGPP*EDRRNEGQLAPVAV
Trigger: TACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTCCCAGGGAGGACCCCGCAGGACAAACAGGGATGTGGTTTTCTTTAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR TCA 90 bp TTATACAAGAGAGACTTTCAGCTAGCTGTCATTCAGTTGGAGCCGTaGGCACGGGCTACAGAGGCTAAGGTTACTTCCTCGCTGCTGGTG +
Preference number: 1 (lower is better)
Translates to: LYKRDFQLAVIQLEP*ARATEAKVTSSLLV
Trigger: CACCAGCAGCGAGGAAGTAACCTTAGCCTCTGTAGCCCGTGCTCACGGCTCCAACTGAATGACAGCTAGCTGAAAGTCTCTCTTGTATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR TCA 90 bp ATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTaGAGTCATGGTCAGTATGAATTACCACTTCTAGGAACACACATC +
Preference number: 1 (lower is better)
Translates to: MVSGNPPSSDISLPT*SHGQYELPLLGTHI
Trigger: GATGTGTGTTCCTAGAAGTGGTAATTCATACTGACCATGACTTCAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR TCA 90 bp ATAAATTATATAAAAATGGAGAACAGGGCTGGTCCTGGAATTTCTTaGTGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGAATTCT +
Preference number: 1 (lower is better)
Translates to: INYIKMENRAGPGIS*CSWECSGTKLAQNS
Trigger: AGAATTCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCCATTTTTATATAATTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR GCA 90 bp TTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATaGTCTCAAAATCACCTAACAGAATGCATGGTATACCAACTGGAC +
Preference number: 1 (lower is better)
Translates to: FLRIIYIPQQTKGKV*SQNHLTECMVYQLD
Trigger: GTCCAGTTGGTATACCATGCATTCTGTTAGGTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR CCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGCTTCCTCGCTGCTGGTaGAATGCTAGAGAAGATCTC +
Preference number: 2 (lower is better)
Translates to: DSSQPNASVSTGEKAETGLPRCW*NAREDL
Trigger: GAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAG...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR CCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGCTTCCTCGCTGCTGGTaGAATGCTAGAGAAGATCTC +
Preference number: 2 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQLPRCW*NAREDL
Trigger: GAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAG...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR CCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGTTACTTCCTCGCTGCTaGTGGAATGCTAGAGAAGAT +
Preference number: 2 (lower is better)
Translates to: TVWIGILAGRITSLHGLRLLPRC*WNARED
Trigger: ATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR TCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGAAGTCATGGTCAGTATaGATTACCACTTCTAGGAAC +
Preference number: 2 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLKSWSV*ITTSRN
Trigger: GTTCCTAGAAGTGGTAATTCATACTGACCATGACTT...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR GCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGTCATTCTCAGAAAAATaGCACATTTTGGATCCAGAG +
Preference number: 2 (lower is better)
Translates to: DSSQPNASVSTGEKAETGSFSEK*HILDPE
Trigger: CTCTGGATCCAAAATGTGGCATTTTTCTGAGAATGA...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR CCA 90 bp GAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGGCTCTGGTACAAAACTaGCACAGAATTCTGATGAGG +
Preference number: 2 (lower is better)
Translates to: EDRRNEGQLAPVAVRVNMALVQN*HRILMR
Trigger: CCTCATCAGAATTCTGTGCCAGTTTTGTACCAGAGC...CATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR TCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTAAGTCATGGTCAGTATaGATTACCACTTCTAGGAAC +
Preference number: 2 (lower is better)
Translates to: CNTVWIGILAGRITSLHGKSWSV*ITTSRN
Trigger: GTTCCTAGAAGTGGTAATTCATACTGACCATGACTT...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR GCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGAATGAGATTAGCATATTaGAACACAGTCTGGATAGGA +
Preference number: 2 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRMRLAY*NTVWIG
Trigger: TCCTATCCAGACTGTGTTGCAATATGCTAATCTCAT...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR CCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTCTTCCTCGCTGCTGGTaGAATGCTAGAGAAGATCTC +
Preference number: 2 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVLPRCW*NAREDL
Trigger: GAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAG...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR CAA 90 bp CTGGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTaGTCAGTTCTACAGATAGTTCGCAACCCAATGCTTCAGTATCCA +
Preference number: 2 (lower is better)
Translates to: LVQNWHRILMRKGKF*SVLQIVRNPMLQYP
Trigger: TGGATACTGAAGCATTGGGTTGCGAACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR CCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGTTACTTCCTCGCTGCTaGTGGAATGCTAGAGAAGAT +
Preference number: 2 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQLLPRC*WNARED
Trigger: ATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR CAA 90 bp TATAAATTATATAAAAATGGAGAACAGGGCTGGTCCTGGAATTTCTaGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGAATTC +
Preference number: 2 (lower is better)
Translates to: YKLYKNGEQGWSWNF*MQLGVLWYKTGTEF
Trigger: GAATTCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCCATTTTTATATAATTTATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR TCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTAAAGTCATGGTCAGTATaGATTACCACTTCTAGGAAC +
Preference number: 2 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLKSWSV*ITTSRN
Trigger: GTTCCTAGAAGTGGTAATTCATACTGACCATGACTT...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR GCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGTCATTCTCAGAAAAATaGCACATTTTGGATCCAGAG +
Preference number: 2 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQSFSEK*HILDPE
Trigger: CTCTGGATCCAAAATGTGGCATTTTTCTGAGAATGA...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR-3UTR GCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTTCATTCTCAGAAAAATaGCACATTTTGGATCCAGAG +
Preference number: 2 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSSFSEK*HILDPE
Trigger: CTCTGGATCCAAAATGTGGCATTTTTCTGAGAATGA...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR TCA 72 bp TGTCCTGCGGGGTCCTCCCTGGGAAGACAGACGCAATaGAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAA +
Preference number: 3 (lower is better)
Translates to: CPAGSSLGRQTQ*RSVSSSGCKSQ
Trigger: TTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTCCCAGGGAGGACCCCGCAGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR GCA 72 bp GAGCACGGGCTACAGAGGCTAAGGTTACTTCCTCGCTaGTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGC +
Preference number: 3 (lower is better)
Translates to: EHGLQRLRLLPR*WWNAREDLPKG
Trigger: GCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAACCTTAGCCTCTGTAGCCCGTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR CCA 72 bp CACGGGCTACAGAGGCTAAGGTTACTTCCTCGCTGCTaGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGA +
Preference number: 3 (lower is better)
Translates to: HGLQRLRLLPRC*WNAREDLPKGR
Trigger: TCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAACCTTAGCCTCTGTAGCCCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR CCA 72 bp GGGCTACAGAGGCTAAGGTTACTTCCTCGCTGCTGGTaGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAG +
Preference number: 3 (lower is better)
Translates to: GLQRLRLLPRCW*NAREDLPKGRK
Trigger: CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAACCTTAGCCTCTGTAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR CCA 72 bp TATAAATTATATAAAAATGGAGAACAGGGCTGGTCCTaGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTAC +
Preference number: 3 (lower is better)
Translates to: YKLYKNGEQGWS*NFLMQLGVLWY
Trigger: GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCCATTTTTATATAATTTATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR TCA 72 bp AGACATTTCTCTTCCAACTTGAAGTCATGGTCAGTATaGATTACCACTTCTAGGAACACACATCCCAATTTG +
Preference number: 3 (lower is better)
Translates to: RHFSSNLKSWSV*ITTSRNTHPNL
Trigger: CAAATTGGGATGTGTGTTCCTAGAAGTGGTAATTCATACTGACCATGACTTCAAGTTGGAAGAGAAATGTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR GCA 72 bp ATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATaGTCTCAAAATCACCTAACAGAATGCATGGTATAC +
Preference number: 3 (lower is better)
Translates to: IIYIPQQTKGKV*SQNHLTECMVY
Trigger: GTATACCATGCATTCTGTTAGGTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGACCTGGGCCGCCTGCTaGGGTCATAGGCCCAACATT +
Preference number: 4 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGTWAAC*GHRPNI
Trigger: AATGTTGGGCCTATGACCCCAGCAGGCGGCCCAGGT...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGTGGTCTCATCCACCGTaGCTAGTAAGGTCCGCAGGG +
Preference number: 4 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGWSHPP*LVRSAG
Trigger: CCCTGCGGACCTTACTAGCCACGGTGGATGAGACCA...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTGCTGCAGGCTGGTCATaGCGTACTGCTGCGCCAGCT +
Preference number: 4 (lower is better)
Translates to: RITSLHGLREPSLLRHFSAAGWS*RTAAPA
Trigger: AGCTGGCGCAGCAGTACGTCATGACCAGCCTGCAGC...AGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATGCTGGGCTTGGGTGGTaGTTCATCAGACCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHAGLGW*FIRPSR
Trigger: TCTGGAGGGTCTGATGAAGCACCACCCAAGCCCAGC...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTCTGCTGGGCTTGGGTaGTGCTTCATCAGACCCTCC +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHSAGLG*CFIRPS
Trigger: GGAGGGTCTGATGAAGCACCACCCAAGCCCAGCAGA...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGACACCCATGTCCACGTaGAGCCAGTGCACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLTPMST*SQCTSS
Trigger: GGAGGAGGTGCACTGGCTGCACGTGGACATGGGTGT...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGCCATGTTCTCGGCAATaGTTAGGGATGGTGCCGTCA +
Preference number: 4 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGPCSRQ*LGMVPS
Trigger: TGACGGCACCATCCCTAACCATTGCCGAGAACATGG...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGACCTGGGCCGCCTGCTaGGGTCATAGGCCCAACATT +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQTWAAC*GHRPNI
Trigger: AATGTTGGGCCTATGACCCCAGCAGGCGGCCCAGGT...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGGATAACCAGGTCTGCTaGGCTTGGGTGGTGCTTCAT +
Preference number: 4 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGDNQVC*AWVVLH
Trigger: ATGAAGCACCACCCAAGCCCAGCAGACCTGGTTATC...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGCTGCCAGCCATGGCTaGGATTCCATGGGAACCCGG +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRAASHG*DSMGTR
Trigger: CCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGC...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TTACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGGCTGCCAGCCATGGCTaGGATTCCATGGGAACCCGG +
Preference number: 4 (lower is better)
Translates to: LLPRCWWNAREDLPKGRKAASHG*DSMGTR
Trigger: CCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGC...CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTGGAGCTGCAGGATCTaGCTTCCCCACAGGCTGATA +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHWSCRI*LPHRLI
Trigger: TATCAGCCTGTGGGGAAGCCAGATCCTGCAGCTCCA...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACTGGTCTCATCCACCGTaGCTAGTAAGGTCCGCAGGG +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYWSHPP*LVRSAG
Trigger: CCCTGCGGACCTTACTAGCCACGGTGGATGAGACCA...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTGTCTGTCAGGTAACTaGTCCCTTCTTCTGGGCCGA +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHCLSGN*SLLLGR
Trigger: TCGGCCCAGAAGAAGGGATCAGTTACCTGACAGACA...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGCTGATTTCCTGGGGCTaGAGCCTCCACGGCTTGACA +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLLISWG*SLHGLT
Trigger: TGTCAAGCCGTGGAGGCTTCAGCCCCAGGAAATCAG...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226988.3
CDS-3UTR GCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGCAGGGGACCGTTCCATaGCAGTACCCAGGTGAGTCT +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQQGTVP*QYPGES
Trigger: AGACTCACCTGGGTACTGGCATGGAACGGTCCCCTG...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TTACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGACACCCATGTCCACGTaGAGCCAGTGCACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: LLPRCWWNAREDLPKGRKTPMST*SQCTSS
Trigger: GGAGGAGGTGCACTGGCTGCACGTGGACATGGGTGT...CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGTGTGTCCGCATGCCTTaGTTTTCACTGTTGGCCAAC +
Preference number: 4 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGCVRMP*FSLLAN
Trigger: GTTGGCCAACAGTGAAAAGCAAGGCATGCGGACACA...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGCTGGGCTTGGGTGGTaGTTCATCAGACCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQAGLGW*FIRPSR
Trigger: TCTGGAGGGTCTGATGAAGCACCACCCAAGCCCAGC...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGCCTGACCTTGGTAAATaGTGCCAGCCATGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGPDLGK*CQPWLG
Trigger: TCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGG...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCTCTGCTGGGCTTGGGTaGTGCTTCATCAGACCCTCC +
Preference number: 4 (lower is better)
Translates to: YFLAAGGMLEKISQRAESSAGLG*CFIRPS
Trigger: GGAGGGTCTGATGAAGCACCACCCAAGCCCAGCAGA...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTGCTGCCAGCCATGGCTaGGATTCCATGGGAACCCGG +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSAASHG*DSMGTR
Trigger: CCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGC...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCCAGCCAGCGCTaGTCTTCTTCCATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHFSSQR*SSSISC
Trigger: GCAGGAAATGGAAGAAGACCAGCGCTGGCTGGAGAA...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGTGGAGCTGCAGGATCTaGCTTCCCCACAGGCTGATA +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGWSCRI*LPHRLI
Trigger: TATCAGCCTGTGGGGAAGCCAGATCCTGCAGCTCCA...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACGCGAGGAGGTTTCTTTaGTGGAGCTGCAGGATCTGG +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYARRFL*WSCRIW
Trigger: CCAGATCCTGCAGCTCCACCAAAGAAACCTCCTCGC...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGCTGTCCACTATCTTCTaGATGATGCCCCTGACATCA +
Preference number: 4 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGLSTIF*MMPLTS
Trigger: TGATGTCAGGGGCATCATTCAGAAGATAGTGGACAG...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGATCTCGATCTCTCGATaGGTGCTGGCTGGAAGAGCA +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGISISR*VLAGRA
Trigger: TGCTCTTCCAGCCAGCACTCATCGAGAGATCGAGAT...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATCTCCAGATACGCGAGTaGTGTACTAAGCTGATAGGC +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHLQIRE*CTKLIG
Trigger: GCCTATCAGCTTAGTACAGCACTCGCGTATCTGGAG...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGCTCATCCGTTCTTCTTaGTGCACCTTCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGLIRSS*CTFSSS
Trigger: GGAGGAGGAGAAGGTGCAGCAAGAAGAACGGATGAG...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGCTGGGCTTGGGTGGTaGTTCATCAGACCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRAGLGW*FIRPSR
Trigger: TCTGGAGGGTCTGATGAAGCACCACCCAAGCCCAGC...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGCCTGACCTTGGTAAATaGTGCCAGCCATGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQPDLGK*CQPWLG
Trigger: TCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGG...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACTTTCTTTGGTGGAGCTaGAGGATCTGGCTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYFLWWS*RIWLPH
Trigger: GTGGGGAAGCCAGATCCTGCAGCTCCACCAAAGAAA...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACCTGGTCATGACGTACTaGTGCGCCAGCTTCATCTTG +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYLVMTY*CASFIL
Trigger: CAAGATGAAGCTGGCGCAGCAGTACGTCATGACCAG...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTGCTTCTTATACTCCTaGTGCAGGCTGGTCATGACG +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHCFLYS*CRLVMT
Trigger: CGTCATGACCAGCCTGCAGCAGGAGTATAAGAAGCA...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGCAAAGCTGGATTCTCTaGGCTCAGGTACACGCCTTG +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGQSWIL*AQVHAL
Trigger: CAAGGCGTGTACCTGAGCCCAGAGAATCCAGCTTTG...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGCACTGGGCTGCCACATaGACATCTCCTGAGGTCTGT +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQHWAAT*TSPEVC
Trigger: ACAGACCTCAGGAGATGTCCATGTGGCAGCCCAGTG...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCTGGAGCTGCAGGATCTaGCTTCCCCACAGGCTGATA +
Preference number: 4 (lower is better)
Translates to: YFLAAGGMLEKISQRAESWSCRI*LPHRLI
Trigger: TATCAGCCTGTGGGGAAGCCAGATCCTGCAGCTCCA...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATAGGGACGTACTCTTCTaGAGGAGCTGGCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHRDVLF*RSWLDF
Trigger: AAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCT...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCTGTCTGTCAGGTAACTaGTCCCTTCTTCTGGGCCGA +
Preference number: 4 (lower is better)
Translates to: YFLAAGGMLEKISQRAESCLSGN*SLLLGR
Trigger: TCGGCCCAGAAGAAGGGATCAGTTACCTGACAGACA...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATGAGCACCAGCGATTTTaGGTTGTAGCATTCCTTTCC +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHEHQRF*VVAFLS
Trigger: GGAAAGGAATGCTACAACTCAAAATCGCTGGTGCTC...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGGCCAACTTTGGTATTaGTGGCAACGCCCGTTCACC +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRGQLWY*WQRPFT
Trigger: GGTGAACGGGCGTTGCCATCAATACCAAAGTTGGCC...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGCTAGGTGTGTGGGATTaGAGCCTTTGTCTGTCAGGT +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGLGVWD*SLCLSG
Trigger: ACCTGACAGACAAAGGCTGCAATCCCACACACCTAG...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTTTCTTTGGTGGAGCTaGAGGATCTGGCTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: RITSLHGLREPSLLRHFSFLWWS*RIWLPH
Trigger: GTGGGGAAGCCAGATCCTGCAGCTCCACCAAAGAAA...AGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCCTCATTGTAGCTGTCTaGAGGGCTGCTGATGCTGGA +
Preference number: 4 (lower is better)
Translates to: YFLAAGGMLEKISQRAESLIVAV*RAADAG
Trigger: TCCAGCATCAGCAGCCCTGCAGACAGCTACAATGAG...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACGTTCAGCAGCTTCTGTaGCATCTCGATCTCTCGATG +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYVQQLL*HLDLSM
Trigger: CATCGAGAGATCGAGATGGCACAGAAGCTGCTGAAC...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGACTGGCCCAGGTGGTTaGCTCACTACTGCTTTCAAA +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGTGPGG*LTTAFK
Trigger: TTTGAAAGCAGTAGTGAGCCAACCACCTGGGCCAGT...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGCACTCCTCTGGTGGGTaGGCGAGTTCATATTTCTCC +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLHSSGG*ASSYFS
Trigger: GGAGAAATATGAACTCGCCCACCCACCAGAGGAGTG...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTCCATGTTCTCGGCAATaGTTAGGGATGGTGCCGTCA +
Preference number: 4 (lower is better)
Translates to: RITSLHGLREPSLLRHFSPCSRQ*LGMVPS
Trigger: TGACGGCACCATCCCTAACCATTGCCGAGAACATGG...AGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACTGCAACAGCCAAAGCTaGATTCTCTGGGCTCAGGTA +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYCNSQS*ILWAQV
Trigger: TACCTGAGCCCAGAGAATCCAGCTTTGGCTGTTGCA...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACCTGGACCATGTGCTGTaGGCTGGGATAAAATCCTTC +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYLDHVL*AGIKSF
Trigger: GAAGGATTTTATCCCAGCCCACAGCACATGGTCCAG...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTAAATGCTGCCAGCCATaGCTGGGATTCCATGGGAAC +
Preference number: 4 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFKCCQP*LGFHGN
Trigger: GTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTT...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGAAATGCTGCCAGCCATaGCTGGGATTCCATGGGAAC +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQKCCQP*LGFHGN
Trigger: GTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTT...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGTTCTCCAGCCAGCGCTaGTCTTCTTCCATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLFSSQR*SSSISC
Trigger: GCAGGAAATGGAAGAAGACCAGCGCTGGCTGGAGAA...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGTGGTCTCATCCACCGTaGCTAGTAAGGTCCGCAGGG +
Preference number: 4 (lower is better)
Translates to: EDRRNEGQLAPVAVRVNMWSHPP*LVRSAG
Trigger: CCCTGCGGACCTTACTAGCCACGGTGGATGAGACCA...CATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTTCGATGAGTGCTGGCTaGAAGAGCAGGAATGGTCTC +
Preference number: 4 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFSMSAG*KSRNGL
Trigger: GAGACCATTCCTGCTCTTCCAGCCAGCACTCATCGA...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTGGCCAACTTTGGTATTaGTGGCAACGCCCGTTCACC +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGGQLWY*WQRPFT
Trigger: GGTGAACGGGCGTTGCCATCAATACCAAAGTTGGCC...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTGTACATCTCCAAACTaGCCTTCTCCAATACAGCGT +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHCTSPN*PSPIQR
Trigger: ACGCTGTATTGGAGAAGGTCAGTTTGGAGATGTACA...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGGCAGCAATGTCCCTGTaGACAAATCTTTTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGAAMSL*TNLLLS
Trigger: GGAGAGCAAAAGATTTGTTCACAGGGACATTGCTGC...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATCCACACGTCACTAGCTaGGGTAAAACGTCGAAAATT +
Preference number: 4 (lower is better)
Translates to: AGRITSLHGLREPSLLRHPHVTS*GKTSKI
Trigger: AATTTTCGACGTTTTACCTCAGCTAGTGACGTGTGG...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGTGTCTGCAGGGCTGCTaGTGCTGGACAGGTTGCTTA +
Preference number: 4 (lower is better)
Translates to: EDRRNEGQLAPVAVRVNMCLQGC*CWTGCL
Trigger: TAAGCAACCTGTCCAGCATCAGCAGCCCTGCAGACA...CATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTTGTCTGCAGGGCTGCTaGTGCTGGACAGGTTGCTTA +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSCLQGC*CWTGCL
Trigger: TAAGCAACCTGTCCAGCATCAGCAGCCCTGCAGACA...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACGCTGCAGGCTGGTCATaGCGTACTGCTGCGCCAGCT +
Preference number: 4 (lower is better)
Translates to: EISILQHSLDRNSGRKDNAAGWS*RTAAPA
Trigger: AGCTGGCGCAGCAGTACGTCATGACCAGCCTGCAGC...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGCAGTGACTGACTCCTaGCACAGAGACTGCATGTGT +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRAVTDS*HRDCMC
Trigger: ACACATGCAGTCTCTGTGTCAGGAGTCAGTCACTGC...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGCTAGGTGTGTGGGATTaGAGCCTTTGTCTGTCAGGT +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQLGVWD*SLCLSG
Trigger: ACCTGACAGACAAAGGCTGCAATCCCACACACCTAG...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGTGTGTCCGCATGCCTTaGTTTTCACTGTTGGCCAAC +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQCVRMP*FSLLAN
Trigger: GTTGGCCAACAGTGAAAAGCAAGGCATGCGGACACA...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTTGTGTCCGCATGCCTTaGTTTTCACTGTTGGCCAAC +
Preference number: 4 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFCVRMP*FSLLAN
Trigger: GTTGGCCAACAGTGAAAAGCAAGGCATGCGGACACA...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGCTGCATGTGTCCGCATaGCTTGCTTTTCACTGTTGG +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQLHVSA*LAFHCW
Trigger: CCAACAGTGAAAAGCAAGGCATGCGGACACATGCAG...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGTTTCTTTGGTGGAGCTaGAGGATCTGGCTTCCCCAC +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRFLWWS*RIWLPH
Trigger: GTGGGGAAGCCAGATCCTGCAGCTCCACCAAAGAAA...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGCTCATTGTAGCTGTCTaGAGGGCTGCTGATGCTGGA +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRLIVAV*RAADAG
Trigger: TCCAGCATCAGCAGCCCTGCAGACAGCTACAATGAG...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGTTCAGCAGCTTCTGTaGCATCTCGATCTCTCGATG +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQVQQLL*HLDLSM
Trigger: CATCGAGAGATCGAGATGGCACAGAAGCTGCTGAAC...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCTGCTTCTTATACTCCTaGTGCAGGCTGGTCATGACG +
Preference number: 4 (lower is better)
Translates to: YFLAAGGMLEKISQRAESCFLYS*CRLVMT
Trigger: CGTCATGACCAGCCTGCAGCAGGAGTATAAGAAGCA...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGGCAGCTGTCAGCATCTaGTTCTTATACTCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLAAVSI*FLYSCC
Trigger: GCAGCAGGAGTATAAGAAGCAGATGCTGACAGCTGC...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACTTTCCACTCCTCTGGTaGGTGGGCGAGTTCATATTT +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYFPLLW*VGEFIF
Trigger: AAATATGAACTCGCCCACCCACCAGAGGAGTGGAAA...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGAGTCTGCTAGGTGTGTaGGATTGCAGCCTTTGTCTG +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQSLLGV*DCSLCL
Trigger: CAGACAAAGGCTGCAATCCCACACACCTAGCAGACT...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGTGCAACAGCCAAAGCTaGATTCTCTGGGCTCAGGTA +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLCNSQS*ILWAQV
Trigger: TACCTGAGCCCAGAGAATCCAGCTTTGGCTGTTGCA...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTAGGAGGTTTCTTTGGTaGAGCTGCAGGATCTGGCTT +
Preference number: 4 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFRRFLW*SCRIWL
Trigger: AAGCCAGATCCTGCAGCTCCACCAAAGAAACCTCCT...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGAGGAGGTTTCTTTGGTaGAGCTGCAGGATCTGGCTT +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQRRFLW*SCRIWL
Trigger: AAGCCAGATCCTGCAGCTCCACCAAAGAAACCTCCT...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCAGGAGGTTTCTTTGGTaGAGCTGCAGGATCTGGCTT +
Preference number: 4 (lower is better)
Translates to: YFLAAGGMLEKISQRAESRRFLW*SCRIWL
Trigger: AAGCCAGATCCTGCAGCTCCACCAAAGAAACCTCCT...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGAGCGAGGAGGTTTCTTTaGTGGAGCTGCAGGATCTGG +
Preference number: 4 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRARRFL*WSCRIW
Trigger: CCAGATCCTGCAGCTCCACCAAAGAAACCTCCTCGC...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TTACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGTCGATGAGTGCTGGCTaGAAGAGCAGGAATGGTCTC +
Preference number: 4 (lower is better)
Translates to: LLPRCWWNAREDLPKGRKSMSAG*KSRNGL
Trigger: GAGACCATTCCTGCTCTTCCAGCCAGCACTCATCGA...CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTCTGTCCACTATCTTCTaGATGATGCCCCTGACATCA +
Preference number: 4 (lower is better)
Translates to: RITSLHGLREPSLLRHFSLSTIF*MMPLTS
Trigger: TGATGTCAGGGGCATCATTCAGAAGATAGTGGACAG...AGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGTTTGTCTTCACTGTTTaGGTACTGGATGGTCTGCAC +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGFVFTV*VLDGLH
Trigger: GTGCAGACCATCCAGTACTCAAACAGTGAAGACAAA...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGTGTGCACAACTCCATaGTTATCCAGACAGGGTTCT +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQVCTTP*LSRQGS
Trigger: AGAACCCTGTCTGGATAATCATGGAGTTGTGCACAC...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGGCAGCAATGTCCCTGTaGACAAATCTTTTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLAAMSL*TNLLLS
Trigger: GGAGAGCAAAAGATTTGTTCACAGGGACATTGCTGC...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGCTGCATGTGTCCGCATaGCTTGCTTTTCACTGTTGG +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRLHVSA*LAFHCW
Trigger: CCAACAGTGAAAAGCAAGGCATGCGGACACATGCAG...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTGACCTTGGTAAATGCTaGCAGCCATGGCTGGGATTC +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGDLGKC*QPWLGF
Trigger: GAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTC...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGCTCATTGTAGCTGTCTaGAGGGCTGCTGATGCTGGA +
Preference number: 4 (lower is better)
Translates to: EDRRNEGQLAPVAVRVNMLIVAV*RAADAG
Trigger: TCCAGCATCAGCAGCCCTGCAGACAGCTACAATGAG...CATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGTTCAGCAGCTTCTGTaGCATCTCGATCTCTCGATG +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRVQQLL*HLDLSM
Trigger: CATCGAGAGATCGAGATGGCACAGAAGCTGCTGAAC...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGACTGGTCATGACGTACTaGTGCGCCAGCTTCATCTTG +
Preference number: 4 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRLVMTY*CASFIL
Trigger: CAAGATGAAGCTGGCGCAGCAGTACGTCATGACCAG...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TTACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGACTGGCCCAGGTGGTTaGCTCACTACTGCTTTCAAA +
Preference number: 4 (lower is better)
Translates to: LLPRCWWNAREDLPKGRKTGPGG*LTTAFK
Trigger: TTTGAAAGCAGTAGTGAGCCAACCACCTGGGCCAGT...CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TTACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGACTGATCCCTTCTTCTaGGCCGATTGCCAATTCCAC +
Preference number: 4 (lower is better)
Translates to: LLPRCWWNAREDLPKGRKTDPFF*ADCQFH
Trigger: GTGGAATTGGCAATCGGCCCAGAAGAAGGGATCAGT...CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCCCTGGTCGAGGGCATaGTGTATGTGTCTTCCTCAT +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGPWSRA*CMCLPH
Trigger: ATGAGGAAGACACATACACCATGCCCTCGACCAGGG...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS-3UTR CCA 90 bp GAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGTCTCTCGATGAGTGCTaGCTGGAAGAGCAGGAATGG +
Preference number: 4 (lower is better)
Translates to: EDRRNEGQLAPVAVRVNMSLDEC*LEEQEW
Trigger: CCATTCCTGCTCTTCCAGCCAGCACTCATCGAGAGA...CATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTTCTCTCGATGAGTGCTaGCTGGAAGAGCAGGAATGG +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLISLDEC*LEEQEW
Trigger: CCATTCCTGCTCTTCCAGCCAGCACTCATCGAGAGA...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR CAA 72 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTaGGGAGTGCTCTGGTACAAAACTGGCACAGAATTC +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQ*GVLWYKTGTEF
Trigger: GAATTCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGCTCGAACTTGGTGTGTaGTTCAAGTTTGGGTCAAGA +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQLELGV*FKFGSR
Trigger: TCTTGACCCAAACTTGAATCACACACCAAGTTCGAG...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGATGCCAGTACCCAGGTaGGTCTTAGTACTCGAACTT +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRMPVPR*VLVLEL
Trigger: AAGTTCGAGTACTAAGACTCACCTGGGTACTGGCAT...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TTACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGATGCCAGTACCCAGGTaGGTCTTAGTACTCGAACTT +
Preference number: 4 (lower is better)
Translates to: LLPRCWWNAREDLPKGRKMPVPR*VLVLEL
Trigger: AAGTTCGAGTACTAAGACTCACCTGGGTACTGGCAT...CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCCGATCGCAGGTGACTaGGGCGAAATCCATAGCAGG +
Preference number: 4 (lower is better)
Translates to: EISILQHSLDRNSGRKDNPIAGD*GEIHSR
Trigger: CCTGCTATGGATTTCGCCTCAGTCACCTGCGATCGG...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAGCACCAGCGATTTTaGGTTGTAGCATTCCTTTCC +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLREHQRF*VVAFLS
Trigger: GGAAAGGAATGCTACAACTCAAAATCGCTGGTGCTC...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCATAGTCATCTGTCTCTaGCACAGAGACTGCATGTGT +
Preference number: 4 (lower is better)
Translates to: YFLAAGGMLEKISQRAESIVICL*HRDCMC
Trigger: ACACATGCAGTCTCTGTGTCAGAGACAGATGACTAT...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS-3UTR TCA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTATAGTCATCTGTCTCTaGCACAGAGACTGCATGTGT +
Preference number: 4 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFIVICL*HRDCMC
Trigger: ACACATGCAGTCTCTGTGTCAGAGACAGATGACTAT...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS-3UTR TCA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGTTTTACACAATCATTTaGAGACACCAGAACATTCCG +
Preference number: 4 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGFYTII*RHQNIP
Trigger: CGGAATGTTCTGGTGTCTTCAAATGATTGTGTAAAA...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTTATGTTGGCAGTGACTaGCTCCTGACACAGAGACTG +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGYVGSD*LLTQRL
Trigger: CAGTCTCTGTGTCAGGAGTCAGTCACTGCCAACATA...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGACTTTATGTTGGCAGTaGCTGACTCCTGACACAGAG +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRTLCWQ*LTPDTE
Trigger: CTCTGTGTCAGGAGTCAGTCACTGCCAACATAAAGT...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGACACCCATGTCCACGTaGAGCCAGTGCACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQTPMST*SQCTSS
Trigger: GGAGGAGGTGCACTGGCTGCACGTGGACATGGGTGT...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGACTCCAGATACGCGAGTaGTGTACTAAGCTGATAGGC +
Preference number: 4 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRLQIRE*CTKLIG
Trigger: GCCTATCAGCTTAGTACAGCACTCGCGTATCTGGAG...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGCTGGTCCAGAAGAGATaGCTGACCTTGGTAAATGCT +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRLVQKR*LTLVNA
Trigger: AGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAG...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTTCTTCCATTTCCTGCTaGTGTCGGATTAGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLISSISC*CRISRS
Trigger: AGAGCGGCTAATCCGACAGCAGCAGGAAATGGAAGA...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGATCTTCCATTTCCTGCTaGTGTCGGATTAGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRSSISC*CRISRS
Trigger: AGAGCGGCTAATCCGACAGCAGCAGGAAATGGAAGA...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTTCTTCTTCCATTTCCTaGTGCTGTCGGATTAGCCGC +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSSSSIS*CCRISR
Trigger: GCGGCTAATCCGACAGCAGCAGGAAATGGAAGAAGA...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTGCAGCTGTCAGCATCTaGTTCTTATACTCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLIAAVSI*FLYSCC
Trigger: GCAGCAGGAGTATAAGAAGCAGATGCTGACAGCTGC...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGCAGTGTGGCCGTGTCTaGCCTAGCATTTTCAGTCTT +
Preference number: 4 (lower is better)
Translates to: EDRRNEGQLAPVAVRVNMQCGRV*PSIFSL
Trigger: AAGACTGAAAATGCTAGGGCAGACACGGCCACACTG...CATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCAGTGTGGCCGTGTCTaGCCTAGCATTTTCAGTCTT +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGQCGRV*PSIFSL
Trigger: AAGACTGAAAATGCTAGGGCAGACACGGCCACACTG...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTACTGGCCCAGGTGGTTaGCTCACTACTGCTTTCAAA +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGTGPGG*LTTAFK
Trigger: TTTGAAAGCAGTAGTGAGCCAACCACCTGGGCCAGT...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTACTGATCCCTTCTTCTaGGCCGATTGCCAATTCCAC +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSTDPFF*ADCQFH
Trigger: GTGGAATTGGCAATCGGCCCAGAAGAAGGGATCAGT...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGTCACTGTTTGAGTACTaGATGGTCTGCACTTGGTTA +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGSLFEY*MVCTWL
Trigger: TAACCAAGTGCAGACCATCCAGTACTCAAACAGTGA...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGACCTGGGCCGCCTGCTaGGGTCATAGGCCCAACATT +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQTWAAC*GHRPNI
Trigger: AATGTTGGGCCTATGACCCCAGCAGGCGGCCCAGGT...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGACTGGACCATGTGCTGTaGGCTGGGATAAAATCCTTC +
Preference number: 4 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRLDHVL*AGIKSF
Trigger: GAAGGATTTTATCCCAGCCCACAGCACATGGTCCAG...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTAGGGACGTACTCTTCTaGAGGAGCTGGCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLIRDVLF*RSWLDF
Trigger: AAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCT...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGCTCGAACTTGGTGTGTaGTTCAAGTTTGGGTCAAGA +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRLELGV*FKFGSR
Trigger: TCTTGACCCAAACTTGAATCACACACCAAGTTCGAG...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTGAGCACCAGCGATTTTaGGTTGTAGCATTCCTTTCC +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLIEHQRF*VVAFLS
Trigger: GGAAAGGAATGCTACAACTCAAAATCGCTGGTGCTC...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACGGCCAACTTTGGTATTaGTGGCAACGCCCGTTCACC +
Preference number: 4 (lower is better)
Translates to: EISILQHSLDRNSGRKDNGQLWY*WQRPFT
Trigger: GGTGAACGGGCGTTGCCATCAATACCAAAGTTGGCC...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGTGTACATCTCCAAACTaGCCTTCTCCAATACAGCGT +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRCTSPN*PSPIQR
Trigger: ACGCTGTATTGGAGAAGGTCAGTTTGGAGATGTACA...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTGTGTGCACAACTCCATaGTTATCCAGACAGGGTTCT +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLIVCTTP*LSRQGS
Trigger: AGAACCCTGTCTGGATAATCATGGAGTTGTGCACAC...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTGCAGCAATGTCCCTGTaGACAAATCTTTTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSAAMSL*TNLLLS
Trigger: GGAGAGCAAAAGATTTGTTCACAGGGACATTGCTGC...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGCCACACGTCACTAGCTaGGGTAAAACGTCGAAAATT +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRPHVTS*GKTSKI
Trigger: AATTTTCGACGTTTTACCTCAGCTAGTGACGTGTGG...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTTTGTTCTTCACTCCTTaGAAAGGCTTCACGCCATGC +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLILFFTP*KGFTPC
Trigger: GCATGGCGTGAAGCCTTTTCAAGGAGTGAAGAACAA...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCAGGATTGTGCTGAGCTaGGCTTTTAGTTCAGTAAAC +
Preference number: 4 (lower is better)
Translates to: YFLAAGGMLEKISQRAESRIVLS*AFSSVN
Trigger: GTTTACTGAACTAAAAGCTCAGCTCAGCACAATCCT...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTTCAGTAGCATCTCCATaGCTGATAATACTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGSVASP*LIILAQ
Trigger: CTGGGCCAGTATTATCAGGCATGGAGATGCTACTGA...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTTAAGGTTGGCAAACTaGCTGAATGTTTGCTGGATC +
Preference number: 4 (lower is better)
Translates to: RITSLHGLREPSLLRHFSLRLAN*LNVCWI
Trigger: GATCCAGCAAACATTCAGGCAGTTTGCCAACCTTAA...AGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTTTTCCACTCCTCTGGTaGGTGGGCGAGTTCATATTT +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGFPLLW*VGEFIF
Trigger: AAATATGAACTCGCCCACCCACCAGAGGAGTGGAAA...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTATATTTCCACTCCTCTaGTGGGTGGGCGAGTTCATA +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLIIFPLL*WVGEFI
Trigger: TATGAACTCGCCCACCCACCAGAGGAGTGGAAATAT...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTCCGATCGCAGGTGACTaGGGCGAAATCCATAGCAGG +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVPIAGD*GEIHSR
Trigger: CCTGCTATGGATTTCGCCTCAGTCACCTGCGATCGG...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACCGATCGCAGGTGACTaGGGCGAAATCCATAGCAGG +
Preference number: 4 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLPIAGD*GEIHSR
Trigger: CCTGCTATGGATTTCGCCTCAGTCACCTGCGATCGG...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTTTAGTGTTTTGGCCTTaGCAGAATCCAGTAAACTCT +
Preference number: 4 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFLVFWP*QNPVNS
Trigger: AGAGTTTACTGGATTCTGTCAAGGCCAAAACACTAA...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTTTTGTCTTCACTGTTTaGGTACTGGATGGTCTGCAC +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSFVFTV*VLDGLH
Trigger: GTGCAGACCATCCAGTACTCAAACAGTGAAGACAAA...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGTGTACATCTCCAAACTaGCCTTCTCCAATACAGCGT +
Preference number: 4 (lower is better)
Translates to: EDRRNEGQLAPVAVRVNMCTSPN*PSPIQR
Trigger: ACGCTGTATTGGAGAAGGTCAGTTTGGAGATGTACA...CATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGTGTCTGCAGGGCTGCTaGTGCTGGACAGGTTGCTTA +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQCLQGC*CWTGCL
Trigger: TAAGCAACCTGTCCAGCATCAGCAGCCCTGCAGACA...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACGCTGCAGGCTGGTCATaGCGTACTGCTGCGCCAGCT +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHAAGWS*RTAAPA
Trigger: AGCTGGCGCAGCAGTACGTCATGACCAGCCTGCAGC...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGGGGACCGTTCCATaGCAGTACCCAGGTGAGTCT +
Preference number: 4 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLQGTVP*QYPGES
Trigger: AGACTCACCTGGGTACTGGCATGGAACGGTCCCCTG...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTCAGGGGACCGTTCCATaGCAGTACCCAGGTGAGTCT +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVQGTVP*QYPGES
Trigger: AGACTCACCTGGGTACTGGCATGGAACGGTCCCCTG...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTAAAGGCTTCACGCCATaGATCAGTATCTCCCACATA +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGKGFTP*ISISHI
Trigger: TATGTGGGAGATACTGATGCATGGCGTGAAGCCTTT...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCTCATCCGTTCTTCTTaGTGCACCTTCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: EISILQHSLDRNSGRKDNLIRSS*CTFSSS
Trigger: GGAGGAGGAGAAGGTGCAGCAAGAAGAACGGATGAG...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGCTAATACTTCATAGTTaGACTTCTTCTCTAGGGCAT +
Preference number: 4 (lower is better)
Translates to: DSSQPNASVSTGEKAETGLILHS*TSSLGH
Trigger: ATGCCCTAGAGAAGAAGTCCAACTATGAAGTATTAG...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGTCACTGTTTGAGTACTaGATGGTCTGCACTTGGTTA +
Preference number: 4 (lower is better)
Translates to: TVWIGILAGRITSLHGLRSLFEY*MVCTWL
Trigger: TAACCAAGTGCAGACCATCCAGTACTCAAACAGTGA...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCCTTGCTTTTCACTGTTaGCCAACTTTGGTATTGATG +
Preference number: 4 (lower is better)
Translates to: YFLAAGGMLEKISQRAESLAFHC*PTLVLM
Trigger: CATCAATACCAAAGTTGGCCAACAGTGAAAAGCAAG...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGGCGAGGAGGTTTCTTTaGTGGAGCTGCAGGATCTGG +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQARRFL*WSCRIW
Trigger: CCAGATCCTGCAGCTCCACCAAAGAAACCTCCTCGC...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGGAATCTCATAATCCCTaGCTTCATCTATTCCATAGC +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLESHNP*LHLFHS
Trigger: GCTATGGAATAGATGAAGCCAGGGATTATGAGATTC...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTATTGTTAAGGCTTCTTaGAGGAACTTCTCTCTCACG +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLIIVKAS*RNFSLT
Trigger: CGTGAGAGAGAAGTTCCTTCAAGAAGCCTTAACAAT...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTTCTTACTTGCAAAAATaGCCTCAGCTCTCCAAGTGT +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSSYLQK*PQLSKC
Trigger: ACACTTGGAGAGCTGAGGTCATTTTTGCAAGTAAGA...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGTTTTACACAATCATTTaGAGACACCAGAACATTCCG +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLFYTII*RHQNIP
Trigger: CGGAATGTTCTGGTGTCTTCAAATGATTGTGTAAAA...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTAGGATTGTGCTGAGCTaGGCTTTTAGTTCAGTAAAC +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSRIVLS*AFSSVN
Trigger: GTTTACTGAACTAAAAGCTCAGCTCAGCACAATCCT...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACTGGTTGGCTCACTACTaGTTTCAAAATAATGAAAGA +
Preference number: 4 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYWLAHY*FQNNER
Trigger: TCTTTCATTATTTTGAAAGCAGTAGTGAGCCAACCA...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTTTAAGGTTGGCAAACTaGCTGAATGTTTGCTGGATC +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLILRLAN*LNVCWI
Trigger: GATCCAGCAAACATTCAGGCAGTTTGCCAACCTTAA...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTTGTGAACAAATCTTTTaGTCTCCAGATACGCGAGTG +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGCEQIF*SPDTRV
Trigger: CACTCGCGTATCTGGAGAGCAAAAGATTTGTTCACA...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTGACCTTGGTAAATGCTaGCAGCCATGGCTGGGATTC +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSDLGKC*QPWLGF
Trigger: GAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTC...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACGCAGCTGTCAGCATCTaGTTCTTATACTCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: EISILQHSLDRNSGRKDNAAVSI*FLYSCC
Trigger: GCAGCAGGAGTATAAGAAGCAGATGCTGACAGCTGC...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTCACTCCTCTGGTGGGTaGGCGAGTTCATATTTCTCC +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSHSSGG*ASSYFS
Trigger: GGAGAAATATGAACTCGCCCACCCACCAGAGGAGTG...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGCTAATACTTCATAGTTaGACTTCTTCTCTAGGGCAT +
Preference number: 4 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLLILHS*TSSLGH
Trigger: ATGCCCTAGAGAAGAAGTCCAACTATGAAGTATTAG...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGATCACTGTTTGAGTACTaGATGGTCTGCACTTGGTTA +
Preference number: 4 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRSLFEY*MVCTWL
Trigger: TAACCAAGTGCAGACCATCCAGTACTCAAACAGTGA...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTCCATGTTCTCGGCAATaGTTAGGGATGGTGCCGTCA +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSPCSRQ*LGMVPS
Trigger: TGACGGCACCATCCCTAACCATTGCCGAGAACATGG...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTGATAACCAGGTCTGCTaGGCTTGGGTGGTGCTTCAT +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSDNQVC*AWVVLH
Trigger: ATGAAGCACCACCCAAGCCCAGCAGACCTGGTTATC...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTAAATGCTGCCAGCCATaGCTGGGATTCCATGGGAAC +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSKCCQP*LGFHGN
Trigger: GTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTT...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACACACTGGGCTGCCACATaGACATCTCCTGAGGTCTGT +
Preference number: 4 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTHWAAT*TSPEVC
Trigger: ACAGACCTCAGGAGATGTCCATGTGGCAGCCCAGTG...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGATTAGTGTTTTGGCCTTaGCAGAATCCAGTAAACTCT +
Preference number: 4 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRLVFWP*QNPVNS
Trigger: AGAGTTTACTGGATTCTGTCAAGGCCAAAACACTAA...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTATCTCGATCTCTCGATaGGTGCTGGCTGGAAGAGCA +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVISISR*VLAGRA
Trigger: TGCTCTTCCAGCCAGCACTCATCGAGAGATCGAGAT...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTCTGCATGTGTCCGCATaGCTTGCTTTTCACTGTTGG +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSLHVSA*LAFHCW
Trigger: CCAACAGTGAAAAGCAAGGCATGCGGACACATGCAG...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGTTTACATGTTTTGATTaGAACAGCCAAAGCTGGATT +
Preference number: 4 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQFTCFD*NSQSWI
Trigger: AATCCAGCTTTGGCTGTTGCAATCAAAACATGTAAA...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGCTCCAGATACGCGAGTaGTGTACTAAGCTGATAGGC +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQLQIRE*CTKLIG
Trigger: GCCTATCAGCTTAGTACAGCACTCGCGTATCTGGAG...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCCTGACCTTGGTAAATaGTGCCAGCCATGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSPDLGK*CQPWLG
Trigger: TCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGG...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGTCTTCCATTTCCTGCTaGTGTCGGATTAGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQSSISC*CRISRS
Trigger: AGAGCGGCTAATCCGACAGCAGCAGGAAATGGAAGA...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGCAGTGTGGCCGTGTCTaGCCTAGCATTTTCAGTCTT +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQQCGRV*PSIFSL
Trigger: AAGACTGAAAATGCTAGGGCAGACACGGCCACACTG...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGACTGATCCCTTCTTCTaGGCCGATTGCCAATTCCAC +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQTDPFF*ADCQFH
Trigger: GTGGAATTGGCAATCGGCCCAGAAGAAGGGATCAGT...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTAGTCTGCTAGGTGTGTaGGATTGCAGCCTTTGTCTG +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSSLLGV*DCSLCL
Trigger: CAGACAAAGGCTGCAATCCCACACACCTAGCAGACT...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGACTTGCTTTTCACTGTTaGCCAACTTTGGTATTGATG +
Preference number: 4 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRLAFHC*PTLVLM
Trigger: CATCAATACCAAAGTTGGCCAACAGTGAAAAGCAAG...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTCCCTGGTCGAGGGCATaGTGTATGTGTCTTCCTCAT +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVPWSRA*CMCLPH
Trigger: ATGAGGAAGACACATACACCATGCCCTCGACCAGGG...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS-3UTR CCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTCAAAGCTGGATTCTCTaGGCTCAGGTACACGCCTTG +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVQSWIL*AQVHAL
Trigger: CAAGGCGTGTACCTGAGCCCAGAGAATCCAGCTTTG...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACACAAAGCTGGATTCTCTaGGCTCAGGTACACGCCTTG +
Preference number: 4 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTQSWIL*AQVHAL
Trigger: CAAGGCGTGTACCTGAGCCCAGAGAATCCAGCTTTG...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGTGCAACAGCCAAAGCTaGATTCTCTGGGCTCAGGTA +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQCNSQS*ILWAQV
Trigger: TACCTGAGCCCAGAGAATCCAGCTTTGGCTGTTGCA...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACTCTGCTGGGCTTGGGTaGTGCTTCATCAGACCCTCC +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHSAGLG*CFIRPS
Trigger: GGAGGGTCTGATGAAGCACCACCCAAGCCCAGCAGA...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTATCGATGAGTGCTGGCTaGAAGAGCAGGAATGGTCTC +
Preference number: 4 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLSMSAG*KSRNGL
Trigger: GAGACCATTCCTGCTCTTCCAGCCAGCACTCATCGA...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACATCTCTCGATGAGTGCTaGCTGGAAGAGCAGGAATGG +
Preference number: 4 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTSLDEC*LEEQEW
Trigger: CCATTCCTGCTCTTCCAGCCAGCACTCATCGAGAGA...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGCCAATTCCACAGAAATaGTCCAACTTGACCCAAGGG +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQPIPQK*SNLTQG
Trigger: CCCTTGGGTCAAGTTGGATCATTTCTGTGGAATTGG...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTTGTCTGTCAGGTAACTaGTCCCTTCTTCTGGGCCGA +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSCLSGN*SLLLGR
Trigger: TCGGCCCAGAAGAAGGGATCAGTTACCTGACAGACA...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACTTTGTCTTCACTGTTTaGGTACTGGATGGTCTGCAC +
Preference number: 4 (lower is better)
Translates to: EISILQHSLDRNSGRKDNFVFTV*VLDGLH
Trigger: GTGCAGACCATCCAGTACTCAAACAGTGAAGACAAA...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTAGTTTTTACATGTTTTaGTTGCAACAGCCAAAGCTG +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLISFYMF*LQQPKL
Trigger: CAGCTTTGGCTGTTGCAATCAAAACATGTAAAAACT...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTAGTTTTTACATGTTTTaGTTGCAACAGCCAAAGCTG +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSSFYMF*LQQPKL
Trigger: CAGCTTTGGCTGTTGCAATCAAAACATGTAAAAACT...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACACTAGGTGTGTGGGATTaGAGCCTTTGTCTGTCAGGT +
Preference number: 4 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTLGVWD*SLCLSG
Trigger: ACCTGACAGACAAAGGCTGCAATCCCACACACCTAG...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCTCATCCGTTCTTCTTaGTGCACCTTCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSLIRSS*CTFSSS
Trigger: GGAGGAGGAGAAGGTGCAGCAAGAAGAACGGATGAG...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTGACCTTGGTAAATGCTaGCAGCCATGGCTGGGATTC +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSDLGKC*QPWLGF
Trigger: GAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTC...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCTGGTCATGACGTACTaGTGCGCCAGCTTCATCTTG +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSLVMTY*CASFIL
Trigger: CAAGATGAAGCTGGCGCAGCAGTACGTCATGACCAG...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGTTCTTATACTCCTGCTaGAGGCTGGTCATGACGTAC +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQFLYSC*RLVMTY
Trigger: GTACGTCATGACCAGCCTGCAGCAGGAGTATAAGAA...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTTTCTTATACTCCTGCTaGAGGCTGGTCATGACGTAC +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSFLYSC*RLVMTY
Trigger: GTACGTCATGACCAGCCTGCAGCAGGAGTATAAGAA...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCACTCCTCTGGTGGGTaGGCGAGTTCATATTTCTCC +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSHSSGG*ASSYFS
Trigger: GGAGAAATATGAACTCGCCCACCCACCAGAGGAGTG...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTAATACTTCATAGTTaGACTTCTTCTCTAGGGCAT +
Preference number: 4 (lower is better)
Translates to: RREGGDREGRSFLLKPLILILHS*TSSLGH
Trigger: ATGCCCTAGAGAAGAAGTCCAACTATGAAGTATTAG...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTGATAACCAGGTCTGCTaGGCTTGGGTGGTGCTTCAT +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSDNQVC*AWVVLH
Trigger: ATGAAGCACCACCCAAGCCCAGCAGACCTGGTTATC...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACCACTGGGCTGCCACATaGACATCTCCTGAGGTCTGT +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHHWAAT*TSPEVC
Trigger: ACAGACCTCAGGAGATGTCCATGTGGCAGCCCAGTG...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAAGGGACGTACTCTTCTaGAGGAGCTGGCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTRDVLF*RSWLDF
Trigger: AAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCT...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTCTGTCCACTATCTTCTaGATGATGCCCCTGACATCA +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVLSTIF*MMPLTS
Trigger: TGATGTCAGGGGCATCATTCAGAAGATAGTGGACAG...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTATTGTTCTTCACTCCTTaGAAAGGCTTCACGCCATGC +
Preference number: 4 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLLFFTP*KGFTPC
Trigger: GCATGGCGTGAAGCCTTTTCAAGGAGTGAAGAACAA...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACAGGATTGTGCTGAGCTaGGCTTTTAGTTCAGTAAAC +
Preference number: 4 (lower is better)
Translates to: EISILQHSLDRNSGRKDNRIVLS*AFSSVN
Trigger: GTTTACTGAACTAAAAGCTCAGCTCAGCACAATCCT...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACATCTCGATCTCTCGATaGGTGCTGGCTGGAAGAGCA +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHISISR*VLAGRA
Trigger: TGCTCTTCCAGCCAGCACTCATCGAGAGATCGAGAT...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTTGGTTGGCTCACTACTaGTTTCAAAATAATGAAAGA +
Preference number: 4 (lower is better)
Translates to: CNTVWIGILAGRITSLHGWLAHY*FQNNER
Trigger: TCTTTCATTATTTTGAAAGCAGTAGTGAGCCAACCA...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACATCAGTAGCATCTCCATaGCTGATAATACTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTSVASP*LIILAQ
Trigger: CTGGGCCAGTATTATCAGGCATGGAGATGCTACTGA...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGATTTACATGTTTTGATTaGAACAGCCAAAGCTGGATT +
Preference number: 4 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRFTCFD*NSQSWI
Trigger: AATCCAGCTTTGGCTGTTGCAATCAAAACATGTAAA...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTTTTACATGTTTTGATTaGAACAGCCAAAGCTGGATT +
Preference number: 4 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSFTCFD*NSQSWI
Trigger: AATCCAGCTTTGGCTGTTGCAATCAAAACATGTAAA...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTCTGGTCCAGAAGAGATaGCTGACCTTGGTAAATGCT +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVLVQKR*LTLVNA
Trigger: AGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAG...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACTGGTCCAGAAGAGATaGCTGACCTTGGTAAATGCT +
Preference number: 4 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLLVQKR*LTLVNA
Trigger: AGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAG...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACTGTGTGATTCAAGTTTaGGTCAAGATAAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: EISILQHSLDRNSGRKDNCVIQV*VKISSC
Trigger: GCAGCTGCTTATCTTGACCCAAACTTGAATCACACA...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTATTTCCACTCCTCTGGTaGGTGGGCGAGTTCATATTT +
Preference number: 4 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLFPLLW*VGEFIF
Trigger: AAATATGAACTCGCCCACCCACCAGAGGAGTGGAAA...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTATATTTCCACTCCTCTaGTGGGTGGGCGAGTTCATA +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVIFPLL*WVGEFI
Trigger: TATGAACTCGCCCACCCACCAGAGGAGTGGAAATAT...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCTGGACCATGTGCTGTaGGCTGGGATAAAATCCTTC +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSLDHVL*AGIKSF
Trigger: GAAGGATTTTATCCCAGCCCACAGCACATGGTCCAG...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACTTCTCCAGCCAGCGCTaGTCTTCTTCCATTTCCTGC +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHFSSQR*SSSISC
Trigger: GCAGGAAATGGAAGAAGACCAGCGCTGGCTGGAGAA...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTCTCGAACTTGGTGTGTaGTTCAAGTTTGGGTCAAGA +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVLELGV*FKFGSR
Trigger: TCTTGACCCAAACTTGAATCACACACCAAGTTCGAG...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCCAATTCCACAGAAATaGTCCAACTTGACCCAAGGG +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSPIPQK*SNLTQG
Trigger: CCCTTGGGTCAAGTTGGATCATTTCTGTGGAATTGG...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACCACACGTCACTAGCTaGGGTAAAACGTCGAAAATT +
Preference number: 4 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLPHVTS*GKTSKI
Trigger: AATTTTCGACGTTTTACCTCAGCTAGTGACGTGTGG...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTTTGTTCTTCACTCCTTaGAAAGGCTTCACGCCATGC +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSLFFTP*KGFTPC
Trigger: GCATGGCGTGAAGCCTTTTCAAGGAGTGAAGAACAA...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTTCAGTAGCATCTCCATaGCTGATAATACTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSSVASP*LIILAQ
Trigger: CTGGGCCAGTATTATCAGGCATGGAGATGCTACTGA...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGTTCTTCTGGGCCGATTaGCAATTCCACAGAAATGAT +
Preference number: 4 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQFFWAD*QFHRND
Trigger: ATCATTTCTGTGGAATTGGCAATCGGCCCAGAAGAA...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTTGTGAACAAATCTTTTaGTCTCCAGATACGCGAGTG +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSCEQIF*SPDTRV
Trigger: CACTCGCGTATCTGGAGAGCAAAAGATTTGTTCACA...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTAAAGGCTTCACGCCATaGATCAGTATCTCCCACATA +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVKGFTP*ISISHI
Trigger: TATGTGGGAGATACTGATGCATGGCGTGAAGCCTTT...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAAAAGGCTTCACGCCATaGATCAGTATCTCCCACATA +
Preference number: 4 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTKGFTP*ISISHI
Trigger: TATGTGGGAGATACTGATGCATGGCGTGAAGCCTTT...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACTCTTCTTCCATTTCCTaGTGCTGTCGGATTAGCCGC +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHSSSIS*CCRISR
Trigger: GCGGCTAATCCGACAGCAGCAGGAAATGGAAGAAGA...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACTGCTTCTTATACTCCTaGTGCAGGCTGGTCATGACG +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHCFLYS*CRLVMT
Trigger: CGTCATGACCAGCCTGCAGCAGGAGTATAAGAAGCA...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTTGTGTGATTCAAGTTTaGGTCAAGATAAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSCVIQV*VKISSC
Trigger: GCAGCTGCTTATCTTGACCCAAACTTGAATCACACA...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTAAGCTTTTCGAGGGCATaGTGTATGTGTCTTCCTCAT +
Preference number: 4 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLSFSRA*CMCLPH
Trigger: ATGAGGAAGACACATACACCATGCCCTCGAAAAGCT...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACCCAATTCCACAGAAATaGTCCAACTTGACCCAAGGG +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHPIPQK*SNLTQG
Trigger: CCCTTGGGTCAAGTTGGATCATTTCTGTGGAATTGG...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTTCTTACTTGCAAAAATaGCCTCAGCTCTCCAAGTGT +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVSYLQK*PQLSKC
Trigger: ACACTTGGAGAGCTGAGGTCATTTTTGCAAGTAAGA...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACATTAAGGTTGGCAAACTaGCTGAATGTTTGCTGGATC +
Preference number: 4 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTLRLAN*LNVCWI
Trigger: GATCCAGCAAACATTCAGGCAGTTTGCCAACCTTAA...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACATTCTTCTGGGCCGATTaGCAATTCCACAGAAATGAT +
Preference number: 4 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTFFWAD*QFHRND
Trigger: ATCATTTCTGTGGAATTGGCAATCGGCCCAGAAGAA...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTTTCTTCTGGGCCGATTaGCAATTCCACAGAAATGAT +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVFFWAD*QFHRND
Trigger: ATCATTTCTGTGGAATTGGCAATCGGCCCAGAAGAA...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTTGTGAACAAATCTTTTaGTCTCCAGATACGCGAGTG +
Preference number: 4 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVCEQIF*SPDTRV
Trigger: CACTCGCGTATCTGGAGAGCAAAAGATTTGTTCACA...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR GCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACTTCTTATACTCCTGCTaGAGGCTGGTCATGACGTAC +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHFLYSC*RLVMTY
Trigger: GTACGTCATGACCAGCCTGCAGCAGGAGTATAAGAA...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACATATTTCCACTCCTCTaGTGGGTGGGCGAGTTCATA +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHIFPLL*WVGEFI
Trigger: TATGAACTCGCCCACCCACCAGAGGAGTGGAAATAT...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTTTAGTGTTTTGGCCTTaGCAGAATCCAGTAAACTCT +
Preference number: 4 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSLVFWP*QNPVNS
Trigger: AGAGTTTACTGGATTCTGTCAAGGCCAAAACACTAA...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTAAGTTTTTACATGTTTTaGTTGCAACAGCCAAAGCTG +
Preference number: 4 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLSFYMF*LQQPKL
Trigger: CAGCTTTGGCTGTTGCAATCAAAACATGTAAAAACT...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACATTGTTAAGGCTTCTTaGAGGAACTTCTCTCTCACG +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHIVKAS*RNFSLT
Trigger: CGTGAGAGAGAAGTTCCTTCAAGAAGCCTTAACAAT...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR TCA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACTCTTACTTGCAAAAATaGCCTCAGCTCTCCAAGTGT +
Preference number: 4 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHSYLQK*PQLSKC
Trigger: ACACTTGGAGAGCTGAGGTCATTTTTGCAAGTAAGA...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
3UTR CAA 72 bp CTTTTATGCACTTTCTCTATAAATGAGATTAGCATATaGCAACACAGTCTGGATAGGAATTCTGGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: LLCTFSINEISI*QHSLDRNSGRK
Trigger: CTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTCATTTATAGAGAAAGTGCATAAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 90 bp CAGGTGAGGGGGAAGCACCTGTCCCATCCCTCGAAGGTCCAAAGCTaGCGAATCCTCCACACTGGGCTGCCACATGGACATCTCCTGAGG +
Preference number: 5 (lower is better)
Translates to: QVRGKHLSHPSKVQS*RILHTGLPHGHLLR
Trigger: CCTCAGGAGATGTCCATGTGGCAGCCCAGTGTGGAGGATTCGGCAGCTTTGGACCTTCGAGGGATGGGACAGGTGCTTCCCCCTCACCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 90 bp TCCACTCCTCTGGTGGGTGGGCGAGTTCATATTTCTCCCTCACACTaGAGACACCCATGTCCACGTGCAGCCAGTGCACCTCCTCCGATC +
Preference number: 5 (lower is better)
Translates to: STPLVGGRVHISPSH*RHPCPRAASAPPPI
Trigger: GATCGGAGGAGGTGCACTGGCTGCACGTGGACATGGGTGTCTCCAGTGTGAGGGAGAAATATGAACTCGCCCACCCACCAGAGGAGTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226466.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2
CDS CCA 90 bp GTGCCATCTCGATCTCTCGATGAGTGCTGGCTGGAAGAGCAGGAATaGTCTCATCCACCGTGGCTAGTAAGGTCCGCAGGGCCAGGCCAA +
Preference number: 5 (lower is better)
Translates to: VPSRSLDECWLEEQE*SHPPWLVRSAGPGQ
Trigger: TTGGCCTGGCCCTGCGGACCTTACTAGCCACGGTGGATGAGACCATTCCTGCTCTTCCAGCCAGCACTCATCGAGAGATCGAGATGGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS TCA 90 bp CCATGTCCACGTGCAGCCAGTGCACCTCCTCCGATCGCAGGTGACTaGGGCGAAATCCATAGCAGGCCACGTGCTTTACTTTGTGACTGT +
Preference number: 5 (lower is better)
Translates to: PCPRAASAPPPIAGD*GEIHSRPRALLCDC
Trigger: ACAGTCACAAAGTAAAGCACGTGGCCTGCTATGGATTTCGCCTCAGTCACCTGCGATCGGAGGAGGTGCACTGGCTGCACGTGGACATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226466.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2
CDS CCA 90 bp TCTGGTCCAGAAGAGATGCCTGACCTTGGTAAATGCTGCCAGCCATaGCTGGGATTCCATGGGAACCCGGGTAGCCAGAGACCTGGTAGT +
Preference number: 5 (lower is better)
Translates to: SGPEEMPDLGKCCQP*LGFHGNPGSQRPGS
Trigger: ACTACCAGGTCTCTGGCTACCCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227395.2
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS CCA 90 bp CCGCAGGGCCAGGCCAACTTCCTTCACCATAGGGACGTACTCTTCTaGAGGAGCTGGCTGGATTTTGCTGGACATCTCGATGACAGCCTT +
Preference number: 5 (lower is better)
Translates to: PQGQANFLHHRDVLF*RSWLDFAGHLDDSL
Trigger: AAGGCTGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCTATGGTGAAGGAAGTTGGCCTGGCCCTGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 90 bp TCCACAATTCTGTCTGGTCCAGAAGAGATGCCTGACCTTGGTAAATaGTGCCAGCCATGGCTGGGATTCCATGGGAACCCGGGTAGCCAG +
Preference number: 5 (lower is better)
Translates to: STILSGPEEMPDLGK*CQPWLGFHGNPGSQ
Trigger: CTGGCTACCCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAGACAGAATTGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS GCA 90 bp GGTTTCCAGTCGGACCCTGAAAACTCCCGTCTTCCCTGTCGATGCTaGCTCGAGAGAGCCTCACATCAGGTTTCAGGAATCGCTCTTCCT +
Preference number: 5 (lower is better)
Translates to: GFQSDPENSRLPCRC*LERASHQVSGIALP
Trigger: AGGAAGAGCGATTCCTGAAACCTGATGTGAGGCTCTCTCGAGGCAGCATCGACAGGGAAGACGGGAGTTTTCAGGGTCCGACTGGAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 90 bp GTCCAGAAGAGATGCCTGACCTTGGTAAATGCTGCCAGCCATGGCTaGGATTCCATGGGAACCCGGGTAGCCAGAGACCTGGTAGTGATT +
Preference number: 5 (lower is better)
Translates to: VQKRCLTLVNAASHG*DSMGTRVARDLVVI
Trigger: AATCACTACCAGGTCTCTGGCTACCCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTCTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227395.2
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS CCA 90 bp CCTGTCCCATCCCTCGAAGGTCCAAAGCTGCCGAATCCTCCACACTaGGCTGCCACATGGACATCTCCTGAGGTCTGTGATTCCACAATT +
Preference number: 5 (lower is better)
Translates to: PVPSLEGPKLPNPPH*AATWTSPEVCDSTI
Trigger: AATTGTGGAATCACAGACCTCAGGAGATGTCCATGTGGCAGCCCAGTGTGGAGGATTCGGCAGCTTTGGACCTTCGAGGGATGGGACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGCACTGTTGGCCAACTTaGGTATTGATGGCAACGCCC +
Preference number: 5 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGHCWPT*VLMATP
Trigger: GGGCGTTGCCATCAATACCAAAGTTGGCCAACAGTG...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCCCAGGTCTGCTGGGCTaGGGTGGTGCTTCATCAGAC +
Preference number: 5 (lower is better)
Translates to: YFLAAGGMLEKISQRAESPGLLG*GGASSD
Trigger: GTCTGATGAAGCACCACCCAAGCCCAGCAGACCTGG...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 90 bp ACAATTCTGTCTGGTCCAGAAGAGATGCCTGACCTTGGTAAATGCTaGCAGCCATGGCTGGGATTCCATGGGAACCCGGGTAGCCAGAGA +
Preference number: 5 (lower is better)
Translates to: TILSGPEEMPDLGKC*QPWLGFHGNPGSQR
Trigger: TCTCTGGCTACCCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAGACAGAATTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS GCA 90 bp GTTGGTTTCCAGTCGGACCCTGAAAACTCCCGTCTTCCCTGTCGATaGTGCCTCGAGAGAGCCTCACATCAGGTTTCAGGAATCGCTCTT +
Preference number: 5 (lower is better)
Translates to: VGFQSDPENSRLPCR*CLERASHQVSGIAL
Trigger: AAGAGCGATTCCTGAAACCTGATGTGAGGCTCTCTCGAGGCAGCATCGACAGGGAAGACGGGAGTTTTCAGGGTCCGACTGGAAACCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 90 bp AGCATCTGCTTCTTATACTCCTGCTGCAGGCTGGTCATGACGTACTaGTGCGCCAGCTTCATCTTGCTGATGAGCTCGCCTAAGTCGGAG +
Preference number: 5 (lower is better)
Translates to: SICFLYSCCRLVMTY*CASFILLMSSPKSE
Trigger: CTCCGACTTAGGCGAGCTCATCAGCAAGATGAAGCTGGCGCAGCAGTACGTCATGACCAGCCTGCAGCAGGAGTATAAGAAGCAGATGCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 90 bp CGGGTAGCCAGAGACCTGGTAGTGATTGGTCTGGACCATGTGCTGTaGGCTGGGATAAAATCCTTCACTGGATCTCGGGCTAGGATAACC +
Preference number: 5 (lower is better)
Translates to: RVARDLVVIGLDHVL*AGIKSFTGSRARIT
Trigger: GGTTATCCTAGCCCGAGATCCAGTGAAGGATTTTATCCCAGCCCACAGCACATGGTCCAGACCAATCACTACCAGGTCTCTGGCTACCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227395.2
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS CCA 90 bp CTCACATCAGGTTTCAGGAATCGCTCTTCCTTCTCCAGCCAGCGCTaGTCTTCTTCCATTTCCTGCTGCTGTCGGATTAGCCGCTCTTCC +
Preference number: 5 (lower is better)
Translates to: LTSGFRNRSSFSSQR*SSSISCCCRISRSS
Trigger: GGAAGAGCGGCTAATCCGACAGCAGCAGGAAATGGAAGAAGACCAGCGCTGGCTGGAGAAGGAAGAGCGATTCCTGAAACCTGATGTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACGCTAGGTGTGTGGGATaGCAGCCTTTGTCTGTCAGG +
Preference number: 5 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYARCVG*QPLSVR
Trigger: CCTGACAGACAAAGGCTGCAATCCCACACACCTAGC...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGAAGAGATGCCTGACCTaGGTAAATGCTGCCAGCCAT +
Preference number: 5 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGKRCLT*VNAASH
Trigger: ATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTT...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTGGCGAGGAGGTTTCTTaGGTGGAGCTGCAGGATCTG +
Preference number: 5 (lower is better)
Translates to: RITSLHGLREPSLLRHFSGEEVS*VELQDL
Trigger: CAGATCCTGCAGCTCCACCAAAGAAACCTCCTCGCC...AGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 90 bp ATCTGCTTCTTATACTCCTGCTGCAGGCTGGTCATGACGTACTGCTaGGCCAGCTTCATCTTGCTGATGAGCTCGCCTAAGTCGGAGTTC +
Preference number: 5 (lower is better)
Translates to: ICFLYSCCRLVMTYC*ASFILLMSSPKSEF
Trigger: GAACTCCGACTTAGGCGAGCTCATCAGCAAGATGAAGCTGGCGCAGCAGTACGTCATGACCAGCCTGCAGCAGGAGTATAAGAAGCAGAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 90 bp CCAACTTCCTTCACCATAGGGACGTACTCTTCTGGAGGAGCTGGCTaGATTTTGCTGGACATCTCGATGACAGCCTTCACTAGGCCTGTC +
Preference number: 5 (lower is better)
Translates to: PTSFTIGTYSSGGAG*ILLDISMTAFTRPV
Trigger: GACAGGCCTAGTGAAGGCTGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCTATGGTGAAGGAAGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGTACTGGCCCAGGTGGTaGGCTCACTACTGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: DSSQPNASVSTGEKAETGYWPRW*AHYCFQ
Trigger: TTGAAAGCAGTAGTGAGCCAACCACCTGGGCCAGTA...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTCCAGGTCTGCTGGGCTaGGGTGGTGCTTCATCAGAC +
Preference number: 5 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSPGLLG*GGASSD
Trigger: GTCTGATGAAGCACCACCCAAGCCCAGCAGACCTGG...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGGCGAGGAGGTTTCTTaGGTGGAGCTGCAGGATCTG +
Preference number: 5 (lower is better)
Translates to: TVWIGILAGRITSLHGLRGEEVS*VELQDL
Trigger: CAGATCCTGCAGCTCCACCAAAGAAACCTCCTCGCC...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 90 bp CTCCTGAGGTCTGTGATTCCACAATTCTGTCTGGTCCAGAAGAGATaGCTGACCTTGGTAAATGCTGCCAGCCATGGCTGGGATTCCATG +
Preference number: 5 (lower is better)
Translates to: LLRSVIPQFCLVQKR*LTLVNAASHGWDSM
Trigger: CATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAGACAGAATTGTGGAATCACAGACCTCAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCCACTGTTGGCCAACTTaGGTATTGATGGCAACGCCC +
Preference number: 5 (lower is better)
Translates to: YFLAAGGMLEKISQRAESHCWPT*VLMATP
Trigger: GGGCGTTGCCATCAATACCAAAGTTGGCCAACAGTG...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACATGTGTCCGCATGCCTaGCTTTTCACTGTTGGCCAA +
Preference number: 5 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYMCPHA*LFTVGQ
Trigger: TTGGCCAACAGTGAAAAGCAAGGCATGCGGACACAT...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAAGAGATGCCTGACCTaGGTAAATGCTGCCAGCCAT +
Preference number: 5 (lower is better)
Translates to: DSSQPNASVSTGEKAETGKRCLT*VNAASH
Trigger: ATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTT...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATGTGTGTGATTCAAGTTaGGGTCAAGATAAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: AGRITSLHGLREPSLLRHVCDSS*GQDKQL
Trigger: CAGCTGCTTATCTTGACCCAAACTTGAATCACACAC...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATCTTTGTCTTCACTGTTaGAGTACTGGATGGTCTGCA +
Preference number: 5 (lower is better)
Translates to: AGRITSLHGLREPSLLRHLCLHC*STGWSA
Trigger: TGCAGACCATCCAGTACTCAAACAGTGAAGACAAAG...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGCTCAGGTACACGCCTaGATGTACATCTCCAAACTG +
Preference number: 5 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQAQVHA*MYISKL
Trigger: CAGTTTGGAGATGTACATCAAGGCGTGTACCTGAGC...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCGCTCAGGTACACGCCTaGATGTACATCTCCAAACTG +
Preference number: 5 (lower is better)
Translates to: YFLAAGGMLEKISQRAESAQVHA*MYISKL
Trigger: CAGTTTGGAGATGTACATCAAGGCGTGTACCTGAGC...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGAAGAGATGCCTGACCTaGGTAAATGCTGCCAGCCAT +
Preference number: 5 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQKRCLT*VNAASH
Trigger: ATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTT...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TTACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGGGAGCTGGCTGGATTTaGCTGGACATCTCGATGACA +
Preference number: 5 (lower is better)
Translates to: LLPRCWWNAREDLPKGRKGAGWI*LDISMT
Trigger: TGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCC...CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATCTTAGTGTTTTGGCCTaGACAGAATCCAGTAAACTC +
Preference number: 5 (lower is better)
Translates to: AGRITSLHGLREPSLLRHLSVLA*TESSKL
Trigger: GAGTTTACTGGATTCTGTCAAGGCCAAAACACTAAG...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGCGGAGCACCAGCGATTTaGAGTTGTAGCATTCCTTTC +
Preference number: 5 (lower is better)
Translates to: YFLAAGGMLEKISQRAESGAPAI*SCSIPF
Trigger: GAAAGGAATGCTACAACTCAAAATCGCTGGTGCTCC...GCTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCACTGTTGGCCAACTTaGGTATTGATGGCAACGCCC +
Preference number: 5 (lower is better)
Translates to: RREGGDREGRSFLLKPLIHCWPT*VLMATP
Trigger: GGGCGTTGCCATCAATACCAAAGTTGGCCAACAGTG...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGATGTGTCCGCATGCCTaGCTTTTCACTGTTGGCCAA +
Preference number: 5 (lower is better)
Translates to: TVWIGILAGRITSLHGLRMCPHA*LFTVGQ
Trigger: TTGGCCAACAGTGAAAAGCAAGGCATGCGGACACAT...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGGGGTGGGAGGACAATTaGGAGGCATTGGTAATCTTT +
Preference number: 5 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLGWEDN*EALVIF
Trigger: AAAGATTACCAATGCCTCCAAATTGTCCTCCCACCC...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTGGAGCTGGCTGGATTTaGCTGGACATCTCGATGACA +
Preference number: 5 (lower is better)
Translates to: RREGGDREGRSFLLKPLIGAGWI*LDISMT
Trigger: TGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCC...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTGGAGCTGGCTGGATTTaGCTGGACATCTCGATGACA +
Preference number: 5 (lower is better)
Translates to: CNTVWIGILAGRITSLHGGAGWI*LDISMT
Trigger: TGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCC...ACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS TCA 90 bp CATAATCCCTGGTCGAGGGCATGGTGTATGTGTCTTCCTCATCGATaGTCTCTGCATAGTCATCTGTCTCTGACACAGAGACTGCATGTG +
Preference number: 5 (lower is better)
Translates to: HNPWSRAWCMCLPHR*SLHSHLSLTQRLHV
Trigger: CACATGCAGTCTCTGTGTCAGAGACAGATGACTATGCAGAGATCATCGATGAGGAAGACACATACACCATGCCCTCGACCAGGGATTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS GCA 90 bp CTGCATAGTCATCTGTCTCTGACACAGAGACTGCATGTGTCCGCATaGCTTGCTTTTCACTGTTGGCCAACTTTGGTATTGATGGCAACG +
Preference number: 5 (lower is better)
Translates to: LHSHLSLTQRLHVSA*LAFHCWPTLVLMAT
Trigger: CGTTGCCATCAATACCAAAGTTGGCCAACAGTGAAAAGCAAGGCATGCGGACACATGCAGTCTCTGTGTCAGAGACAGATGACTATGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS GCA 90 bp GCTTTTCGAGGGCATGGTGTATGTGTCTTCCTCATCGATGATCTCTaGATAGTCATCTGTCTCGTCCCCACTAATTTCATCCGTTGGAGG +
Preference number: 5 (lower is better)
Translates to: AFRGHGVCVFLIDDL*IVICLVPTNFIRWR
Trigger: CCTCCAACGGATGAAATTAGTGGGGACGAGACAGATGACTATGCAGAGATCATCGATGAGGAAGACACATACACCATGCCCTCGAAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS CCA 90 bp GATCTCTGCATAGTCATCTGTCTCGTCCCCACTAATTTCATCCGTTaGAGGAGGTTCAAGAGAACAGAAGACCAAAGGGAGAAAGCGCCT +
Preference number: 5 (lower is better)
Translates to: DLCIVICLVPTNFIR*RRFKRTEDQREKAP
Trigger: AGGCGCTTTCTCCCTTTGGTCTTCTGTTCTCTTGAACCTCCTCCAACGGATGAAATTAGTGGGGACGAGACAGATGACTATGCAGAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTGTGTGTGATTCAAGTTaGGGTCAAGATAAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFVCDSS*GQDKQL
Trigger: CAGCTGCTTATCTTGACCCAAACTTGAATCACACAC...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGGTCACTCTTCACCTGTaGATAGAAGAAATTCAATGT +
Preference number: 5 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGVTLHL*IEEIQC
Trigger: ACATTGAATTTCTTCTATCAACAGGTGAAGAGTGAC...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGCACTTGAAGCACTCTTaGTCAAATCTGTACACAGGA +
Preference number: 5 (lower is better)
Translates to: DSSQPNASVSTGEKAETGHLKHS*SNLYTG
Trigger: TCCTGTGTACAGATTTGACAAAGAGTGCTTCAAGTG...CCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GGAGAACAGGGCTGGTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACCCTTGCTTTTCACTGTaGGCCAACTTTGGTATTGAT +
Preference number: 5 (lower is better)
Translates to: GEQGWSWNFLMQLGVLWYPCFSL*ANFGID
Trigger: ATCAATACCAAAGTTGGCCAACAGTGAAAAGCAAGG...GTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGACCAGCCCTGTTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGGAGGGCAGTTTTTACATGTTTaGATTGCAACAGCCAAAGCT +
Preference number: 5 (lower is better)
Translates to: VRNPMLQYPQERRRRQGGQFLHV*IATAKA
Trigger: AGCTTTGGCTGTTGCAATCAAAACATGTAAAAACTG...CCCTCCCTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTATTGTTCTTCACTCCTaGAAAAGGCTTCACGCCATG +
Preference number: 5 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFIVLHS*KRLHAM
Trigger: CATGGCGTGAAGCCTTTTCAAGGAGTGAAGAACAAT...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS TCA 90 bp GGAACTTCTCTCTCACGCTGTCCGAAGTACAGTTTTTACATGTTTTaGTTGCAACAGCCAAAGCTGGATTCTCTGGGCTCAGGTACACGC +
Preference number: 5 (lower is better)
Translates to: GTSLSRCPKYSFYMF*LQQPKLDSLGSGTR
Trigger: GCGTGTACCTGAGCCCAGAGAATCCAGCTTTGGCTGTTGCAATCAAAACATGTAAAAACTGTACTTCGGACAGCGTGAGAGAGAAGTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS TCA 90 bp CGTACTCTTCTGGAGGAGCTGGCTGGATTTTGCTGGACATCTCGATaGCAGCCTTCACTAGGCCTGTCACATTTTCATATACCTTGTCAT +
Preference number: 5 (lower is better)
Translates to: RTLLEELAGFCWTSR*QPSLGLSHFHIPCH
Trigger: ATGACAAGGTATATGAAAATGTGACAGGCCTAGTGAAGGCTGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCCTCCAGAAGAGTACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 90 bp CTTCTCTCTCACGCTGTCCGAAGTACAGTTTTTACATGTTTTGATTaGAACAGCCAAAGCTGGATTCTCTGGGCTCAGGTACACGCCTTG +
Preference number: 5 (lower is better)
Translates to: LLSHAVRSTVFTCFD*NSQSWILWAQVHAL
Trigger: CAAGGCGTGTACCTGAGCCCAGAGAATCCAGCTTTGGCTGTTGCAATCAAAACATGTAAAAACTGTACTTCGGACAGCGTGAGAGAGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATGGTTTAGAAATCCTTTaGGCAAGTAACGAATTCTCA +
Preference number: 5 (lower is better)
Translates to: AGRITSLHGLREPSLLRHGLEIL*ASNEFS
Trigger: TGAGAATTCGTTACTTGCCAAAAGGATTTCTAAACC...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATGTCACTCTTCACCTGTaGATAGAAGAAATTCAATGT +
Preference number: 5 (lower is better)
Translates to: AGRITSLHGLREPSLLRHVTLHL*IEEIQC
Trigger: ACATTGAATTTCTTCTATCAACAGGTGAAGAGTGAC...ATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGCACTTGAAGCACTCTTaGTCAAATCTGTACACAGGA +
Preference number: 5 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQHLKHS*SNLYTG
Trigger: TCCTGTGTACAGATTTGACAAAGAGTGCTTCAAGTG...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTCCAGGTCTGCTGGGCTaGGGTGGTGCTTCATCAGAC +
Preference number: 5 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVPGLLG*GGASSD
Trigger: GTCTGATGAAGCACCACCCAAGCCCAGCAGACCTGG...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTACATTTTCATATACCTaGTCATTGGACCGGTCAAGG +
Preference number: 5 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFTFSYT*SLDRSR
Trigger: CCTTGACCGGTCCAATGACAAGGTATATGAAAATGT...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS TCA 90 bp GTATGTGTCTTCCTCATCGATGATCTCTGCATAGTCATCTGTCTCTaGCACAGAGACTGCATGTGTCCGCATGCCTTGCTTTTCACTGTT +
Preference number: 5 (lower is better)
Translates to: VCVFLIDDLCIVICL*HRDCMCPHALLFTV
Trigger: AACAGTGAAAAGCAAGGCATGCGGACACATGCAGTCTCTGTGTCAGAGACAGATGACTATGCAGAGATCATCGATGAGGAAGACACATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS CCA 90 bp TTCCTGTCTTTGTCTTCACTGTTTGAGTACTGGATGGTCTGCACTTaGTTAAAGTCTGCTAGGTGTGTGGGATTGCAGCCTTTGTCTGTC +
Preference number: 5 (lower is better)
Translates to: FLSLSSLFEYWMVCT*LKSARCVGLQPLSV
Trigger: GACAGACAAAGGCTGCAATCCCACACACCTAGCAGACTTTAACCAAGTGCAGACCATCCAGTACTCAAACAGTGAAGACAAAGACAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTGTGTGTGATTCAAGTTaGGGTCAAGATAAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: RREGGDREGRSFLLKPLIVCDSS*GQDKQL
Trigger: CAGCTGCTTATCTTGACCCAAACTTGAATCACACAC...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACTACTGGCCCAGGTGGTaGGCTCACTACTGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: EISILQHSLDRNSGRKDNYWPRW*AHYCFQ
Trigger: TTGAAAGCAGTAGTGAGCCAACCACCTGGGCCAGTA...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGTTGATCAGCTATTTCTaGCATGTAGTCACTCTTCAC +
Preference number: 5 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLLISYF*HVVTLH
Trigger: GTGAAGAGTGACTACATGCAAGAAATAGCTGATCAA...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGCTTAGTGTTTTGGCCTaGACAGAATCCAGTAAACTC +
Preference number: 5 (lower is better)
Translates to: TVWIGILAGRITSLHGLRLSVLA*TESSKL
Trigger: GAGTTTACTGGATTCTGTCAAGGCCAAAACACTAAG...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCTTCTCTATTAAGGTaGGCAAACTGCCTGAATGTT +
Preference number: 5 (lower is better)
Translates to: RITSLHGLREPSLLRHFSSSLLR*ANCLNV
Trigger: AACATTCAGGCAGTTTGCCAACCTTAATAGAGAAGA...AGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTGCTAGGTGTGTGGGATaGCAGCCTTTGTCTGTCAGG +
Preference number: 5 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSARCVG*QPLSVR
Trigger: CCTGACAGACAAAGGCTGCAATCCCACACACCTAGC...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGCCTTGCTTTTCACTGTaGGCCAACTTTGGTATTGAT +
Preference number: 5 (lower is better)
Translates to: TVWIGILAGRITSLHGLRPCFSL*ANFGID
Trigger: ATCAATACCAAAGTTGGCCAACAGTGAAAAGCAAGG...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp ACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCAGTCTCCATGGTCTCAGGGTAAAACGTCGAAAATaGATTGACTCTGGAGCCATC +
Preference number: 5 (lower is better)
Translates to: TVWIGILAGRITSLHGLRVKRRK*IDSGAI
Trigger: GATGGCTCCAGAGTCAATCAATTTTCGACGTTTTAC...CCTGAGACCATGGAGACTGGTTATCCTTCCTGCCAGAATTCCTATCCAGACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGAATTGTTCTTCACTCCTaGAAAAGGCTTCACGCCATG +
Preference number: 5 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRIVLHS*KRLHAM
Trigger: CATGGCGTGAAGCCTTTTCAAGGAGTGAAGAACAAT...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGGACAATTTGGAGGCATaGGTAATCTTTCCCCATTTT +
Preference number: 5 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQDNLEA*VIFPHF
Trigger: AAAATGGGGAAAGATTACCAATGCCTCCAAATTGTC...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TTACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGACATTTTCATATACCTaGTCATTGGACCGGTCAAGG +
Preference number: 5 (lower is better)
Translates to: LLPRCWWNAREDLPKGRKTFSYT*SLDRSR
Trigger: CCTTGACCGGTCCAATGACAAGGTATATGAAAATGT...CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 90 bp ATTCCTTTCCTGTCTTTGTCTTCACTGTTTGAGTACTGGATGGTCTaGACTTGGTTAAAGTCTGCTAGGTGTGTGGGATTGCAGCCTTTG +
Preference number: 5 (lower is better)
Translates to: IPFLSLSSLFEYWMV*TWLKSARCVGLQPL
Trigger: CAAAGGCTGCAATCCCACACACCTAGCAGACTTTAACCAAGTGCAGACCATCCAGTACTCAAACAGTGAAGACAAAGACAGGAAAGGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTGGTTTAGAAATCCTTTaGGCAAGTAACGAATTCTCA +
Preference number: 5 (lower is better)
Translates to: RITSLHGLREPSLLRHFSGLEIL*ASNEFS
Trigger: TGAGAATTCGTTACTTGCCAAAAGGATTTCTAAACC...AGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TTACTTCCTCGCTGCTGGTGGAATGCTAGAGAAGATCTCCCAAAGGGCAGAAAGTTGATCAGCTATTTCTaGCATGTAGTCACTCTTCAC +
Preference number: 5 (lower is better)
Translates to: LLPRCWWNAREDLPKGRKLISYF*HVVTLH
Trigger: GTGAAGAGTGACTACATGCAAGAAATAGCTGATCAA...CTTTCTGCCCTTTGGGAGATCTTCTCTAGCATTCCACCAGCAGCGAGGAAGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTCTTCAAAGCTATTTCTaGGTCTACTTGATCAGCTAT +
Preference number: 5 (lower is better)
Translates to: RITSLHGLREPSLLRHFSLQSYF*VYLISY
Trigger: ATAGCTGATCAAGTAGACCAAGAAATAGCTTTGAAG...AGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCTCTTCCAACTTGCTTCAAAGCTATTTCTaGGTCTACTTGATCAGCTAT +
Preference number: 5 (lower is better)
Translates to: SLHGLREPSLLRHFSSNLLQSYF*VYLISY
Trigger: ATAGCTGATCAAGTAGACCAAGAAATAGCTTTGAAG...CAAGTTGGAAGAGAAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGACACTTGAAGCACTCTTaGTCAAATCTGTACACAGGA +
Preference number: 5 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRHLKHS*SNLYTG
Trigger: TCCTGTGTACAGATTTGACAAAGAGTGCTTCAAGTG...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGAAGGATAACCAGTCTCCATGGTCTCAGGGAACCCTCCCTCCTCAGACATTTCAGTTTTTACATGTTTaGATTGCAACAGCCAAAGCT +
Preference number: 5 (lower is better)
Translates to: RKDNQSPWSQGTLPPQTFQFLHV*IATAKA
Trigger: AGCTTTGGCTGTTGCAATCAAAACATGTAAAAACTG...AAATGTCTGAGGAGGGAGGGTTCCCTGAGACCATGGAGACTGGTTATCCTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp CAGATAGTTCGCAACCCAATGCTTCAGTATCCACAGGAGAGAAGGCGGAGACAGCAGTTTTTACATGTTTaGATTGCAACAGCCAAAGCT +
Preference number: 5 (lower is better)
Translates to: QIVRNPMLQYPQERRRRQQFLHV*IATAKA
Trigger: AGCTTTGGCTGTTGCAATCAAAACATGTAAAAACTG...CTGTCTCCGCCTTCTCTCCTGTGGATACTGAAGCATTGGGTTGCGAACTATCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGGTAAAACGTCGAAAATaGATTGACTCTGGAGCCATC +
Preference number: 5 (lower is better)
Translates to: EDRRNEGQLAPVAVRVNMVKRRK*IDSGAI
Trigger: GATGGCTCCAGAGTCAATCAATTTTCGACGTTTTAC...CATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GTCCTGGAATTTCTTGATGCAGTTGGGAGTGCTCTGGTACAAAACTGGCACAGAACATTTTCATATACCTaGTCATTGGACCGGTCAAGG +
Preference number: 5 (lower is better)
Translates to: VLEFLDAVGSALVQNWHRTFSYT*SLDRSR
Trigger: CCTTGACCGGTCCAATGACAAGGTATATGAAAATGT...TCTGTGCCAGTTTTGTACCAGAGCACTCCCAACTGCATCAAGAAATTCCAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTTTGATCAGCTATTTCTaGCATGTAGTCACTCTTCAC +
Preference number: 5 (lower is better)
Translates to: RREGGDREGRSFLLKPLILISYF*HVVTLH
Trigger: GTGAAGAGTGACTACATGCAAGAAATAGCTGATCAA...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GAAGACAGACGCAATGAAGGTCAGTTAGCTCCAGTGGCTGTAAGAGTCAACATGTCTTCTCTATTAAGGTaGGCAAACTGCCTGAATGTT +
Preference number: 5 (lower is better)
Translates to: EDRRNEGQLAPVAVRVNMSSLLR*ANCLNV
Trigger: AACATTCAGGCAGTTTGCCAACCTTAATAGAGAAGA...CATGTTGACTCTTACAGCCACTGGAGCTAACTGACCTTCATTGCGTCTGTCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTCTGACAATTTGGAGGCATaGGTAATCTTTCCCCATTTT +
Preference number: 5 (lower is better)
Translates to: ERRRRQGGQKFSFETTHSDNLEA*VIFPHF
Trigger: AAAATGGGGAAAGATTACCAATGCCTCCAAATTGTC...AGAATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACGGCGAGGAGGTTTCTTaGGTGGAGCTGCAGGATCTG +
Preference number: 5 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHGEEVS*VELQDL
Trigger: CAGATCCTGCAGCTCCACCAAAGAAACCTCCTCGCC...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGGAGAGAAGGCGGAGACAGGGAGGGCAGAAGTTTTCTTTTGAAACCACTCATTGTCACTCTTCACCTGTaGATAGAAGAAATTCAATGT +
Preference number: 5 (lower is better)
Translates to: RREGGDREGRSFLLKPLIVTLHL*IEEIQC
Trigger: ACATTGAATTTCTTCTATCAACAGGTGAAGAGTGAC...AATGAGTGGTTTCAAAAGAAAACTTCTGCCCTCCCTGTCTCCGCCTTCTCTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACCTTTGTCTTCACTGTTaGAGTACTGGATGGTCTGCA +
Preference number: 5 (lower is better)
Translates to: EISILQHSLDRNSGRKDNLCLHC*STGWSA
Trigger: TGCAGACCATCCAGTACTCAAACAGTGAAGACAAAG...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGGGAGCACCAGCGATTTaGAGTTGTAGCATTCCTTTC +
Preference number: 5 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQGAPAI*SCSIPF
Trigger: GAAAGGAATGCTACAACTCAAAATCGCTGGTGCTCC...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAATGTGTCCGCATGCCTaGCTTTTCACTGTTGGCCAA +
Preference number: 5 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTMCPHA*LFTVGQ
Trigger: TTGGCCAACAGTGAAAAGCAAGGCATGCGGACACAT...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GAGATTAGCATATTGCAACACAGTCTGGATAGGAATTCTGGCAGGAAGGATAACATTGTTCTTCACTCCTaGAAAAGGCTTCACGCCATG +
Preference number: 5 (lower is better)
Translates to: EISILQHSLDRNSGRKDNIVLHS*KRLHAM
Trigger: CATGGCGTGAAGCCTTTTCAAGGAGTGAAGAACAAT...GTTATCCTTCCTGCCAGAATTCCTATCCAGACTGTGTTGCAATATGCTAATCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 90 bp TACAGCGTCCAAGTTCTATTCTTTCTCTCTGAATCTCATAATCCCTaGCTTCATCTATTCCATAGCTTTTCGAGGGCATGGTGTATGTGT +
Preference number: 5 (lower is better)
Translates to: YSVQVLFFLSESHNP*LHLFHSFSRAWCMC
Trigger: ACACATACACCATGCCCTCGAAAAGCTATGGAATAGATGAAGCCAGGGATTATGAGATTCAGAGAGAAAGAATAGAACTTGGACGCTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTAGGGTGGGAGGACAATTaGGAGGCATTGGTAATCTTT +
Preference number: 5 (lower is better)
Translates to: VQNWHRILMRKGKFLSVLGWEDN*EALVIF
Trigger: AAAGATTACCAATGCCTCCAAATTGTCCTCCCACCC...TAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp GGTACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTCCTTGCTTTTCACTGTaGGCCAACTTTGGTATTGAT +
Preference number: 5 (lower is better)
Translates to: GTKLAQNSDEERQVFVSSPCFSL*ANFGID
Trigger: ATCAATACCAAAGTTGGCCAACAGTGAAAAGCAAGG...AGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGTACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACGCTCAGGTACACGCCTaGATGTACATCTCCAAACTG +
Preference number: 5 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHAQVHA*MYISKL
Trigger: CAGTTTGGAGATGTACATCAAGGCGTGTACCTGAGC...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 90 bp TCAAAGAATTTCAGGATGCTTTCTTCTCTATTAAGGTTGGCAAACTaGCTGAATGTTTGCTGGATCAGCTTTCTTAGTGTTTTGGCCTTG +
Preference number: 5 (lower is better)
Translates to: SKNFRMLSSLLRLAN*LNVCWISFLSVLAL
Trigger: CAAGGCCAAAACACTAAGAAAGCTGATCCAGCAAACATTCAGGCAGTTTGCCAACCTTAATAGAGAAGAAAGCATCCTGAAATTCTTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp ACAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACACTTAGTGTTTTGGCCTaGACAGAATCCAGTAAACTC +
Preference number: 5 (lower is better)
Translates to: TKLAQNSDEERQVFVSSTLSVLA*TESSKL
Trigger: GAGTTTACTGGATTCTGTCAAGGCCAAAACACTAAG...TGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp AGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTCAAAATCACGGAGCACCAGCGATTTaGAGTTGTAGCATTCCTTTC +
Preference number: 5 (lower is better)
Translates to: RIIYIPQQTKGKVCSQNHGAPAI*SCSIPF
Trigger: GAAAGGAATGCTACAACTCAAAATCGCTGGTGCTCC...GTGATTTTGAGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp CAAAACTGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGGGTTTAGAAATCCTTTaGGCAAGTAACGAATTCTCA +
Preference number: 5 (lower is better)
Translates to: QNWHRILMRKGKFLSVLQGLEIL*ASNEFS
Trigger: TGAGAATTCGTTACTTGCCAAAAGGATTTCTAAACC...CTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCAGTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TTCTTCCTGAGAATAATTTATATCCCCCAACAAACTAAAGGGAAGGTATGCTCTGTAAAACGTCGAAAATaGATTGACTCTGGAGCCATC +
Preference number: 5 (lower is better)
Translates to: FFLRIIYIPQQTKGKVCSVKRRK*IDSGAI
Trigger: GATGGCTCCAGAGTCAATCAATTTTCGACGTTTTAC...AGAGCATACCTTCCCTTTAGTTTGTTGGGGGATATAAATTATTCTCAGGAAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS-3UTR CAA 90 bp TGGCACAGAATTCTGATGAGGAAAGGCAAGTTTTTGTCAGTTCTACAGATAGTTGACAATTTGGAGGCATaGGTAATCTTTCCCCATTTT +
Preference number: 5 (lower is better)
Translates to: WHRILMRKGKFLSVLQIVDNLEA*VIFPHF
Trigger: AAAATGGGGAAAGATTACCAATGCCTCCAAATTGTC...AACTATCTGTAGAACTGACAAAAACTTGCCTTTCCTCATCAGAATTCTGTGCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp TTAGGTGGCCAGGTGCTCCAGGGCGAGGAGGTTTCTTaGGTGGAGCTGCAGGATCTGGCTTCCCCACAGGCT +
Preference number: 6 (lower is better)
Translates to: LGGQVLQGEEVS*VELQDLASPQA
Trigger: AGCCTGTGGGGAAGCCAGATCCTGCAGCTCCACCAAAGAAACCTCCTCGCCCTGGAGCACCTGGCCACCTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 72 bp TCTGCAGGGCTGCTGATGCTGGACAGGTTGCTTAGGTaGCCAGGTGCTCCAGGGCGAGGAGGTTTCTTTGGT +
Preference number: 6 (lower is better)
Translates to: SAGLLMLDRLLR*PGAPGRGGFFG
Trigger: ACCAAAGAAACCTCCTCGCCCTGGAGCACCTGGCCACCTAAGCAACCTGTCCAGCATCAGCAGCCCTGCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 90 bp ACAGGTTGCTTAGGTGGCCAGGTGCTCCAGGGCGAGGAGGTTTCTTaGGTGGAGCTGCAGGATCTGGCTTCCCCACAGGCTGATAGATGT +
Preference number: 6 (lower is better)
Translates to: TGCLGGQVLQGEEVS*VELQDLASPQADRC
Trigger: ACATCTATCAGCCTGTGGGGAAGCCAGATCCTGCAGCTCCACCAAAGAAACCTCCTCGCCCTGGAGCACCTGGCCACCTAAGCAACCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 90 bp TCCTGCTGCAGGCTGGTCATGACGTACTGCTGCGCCAGCTTCATCTaGCTGATGAGCTCGCCTAAGTCGGAGTTCAGCAGCTTCTGTGCC +
Preference number: 6 (lower is better)
Translates to: SCCRLVMTYCCASFI*LMSSPKSEFSSFCA
Trigger: GGCACAGAAGCTGCTGAACTCCGACTTAGGCGAGCTCATCAGCAAGATGAAGCTGGCGCAGCAGTACGTCATGACCAGCCTGCAGCAGGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS TCA 72 bp CGTGCAGCCAGTGCACCTCCTCCGATCGCAGGTGACTaGGGCGAAATCCATAGCAGGCCACGTGCTTTACTT +
Preference number: 6 (lower is better)
Translates to: RAASAPPPIAGD*GEIHSRPRALL
Trigger: AAGTAAAGCACGTGGCCTGCTATGGATTTCGCCTCAGTCACCTGCGATCGGAGGAGGTGCACTGGCTGCACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226466.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2
CDS GCA 72 bp AGGTGCTCCAGGGCGAGGAGGTTTCTTTGGTGGAGCTaGAGGATCTGGCTTCCCCACAGGCTGATAGATGTG +
Preference number: 6 (lower is better)
Translates to: RCSRARRFLWWS*RIWLPHRLIDV
Trigger: CACATCTATCAGCCTGTGGGGAAGCCAGATCCTGCAGCTCCACCAAAGAAACCTCCTCGCCCTGGAGCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 72 bp CTGGTGGGTGGGCGAGTTCATATTTCTCCCTCACACTaGAGACACCCATGTCCACGTGCAGCCAGTGCACCT +
Preference number: 6 (lower is better)
Translates to: LVGGRVHISPSH*RHPCPRAASAP
Trigger: AGGTGCACTGGCTGCACGTGGACATGGGTGTCTCCAGTGTGAGGGAGAAATATGAACTCGCCCACCCACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226466.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2
CDS CCA 72 bp AGATGCCTGACCTTGGTAAATGCTGCCAGCCATGGCTaGGATTCCATGGGAACCCGGGTAGCCAGAGACCTG +
Preference number: 6 (lower is better)
Translates to: RCLTLVNAASHG*DSMGTRVARDL
Trigger: CAGGTCTCTGGCTACCCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227395.2
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS CCA 72 bp CGATCTCTCGATGAGTGCTGGCTGGAAGAGCAGGAATaGTCTCATCCACCGTGGCTAGTAAGGTCCGCAGGG +
Preference number: 6 (lower is better)
Translates to: RSLDECWLEEQE*SHPPWLVRSAG
Trigger: CCCTGCGGACCTTACTAGCCACGGTGGATGAGACCATTCCTGCTCTTCCAGCCAGCACTCATCGAGAGATCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 72 bp CTGTCTGGTCCAGAAGAGATGCCTGACCTTGGTAAATaGTGCCAGCCATGGCTGGGATTCCATGGGAACCCG +
Preference number: 6 (lower is better)
Translates to: LSGPEEMPDLGK*CQPWLGFHGNP
Trigger: CGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227395.2
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS GCA 72 bp CAGTCGGACCCTGAAAACTCCCGTCTTCCCTGTCGATaGTGCCTCGAGAGAGCCTCACATCAGGTTTCAGGA +
Preference number: 6 (lower is better)
Translates to: QSDPENSRLPCR*CLERASHQVSG
Trigger: TCCTGAAACCTGATGTGAGGCTCTCTCGAGGCAGCATCGACAGGGAAGACGGGAGTTTTCAGGGTCCGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 72 bp GAAGAGATGCCTGACCTTGGTAAATGCTGCCAGCCATaGCTGGGATTCCATGGGAACCCGGGTAGCCAGAGA +
Preference number: 6 (lower is better)
Translates to: EEMPDLGKCCQP*LGFHGNPGSQR
Trigger: TCTCTGGCTACCCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227395.2
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS CCA 72 bp TCCCTCGAAGGTCCAAAGCTGCCGAATCCTCCACACTaGGCTGCCACATGGACATCTCCTGAGGTCTGTGAT +
Preference number: 6 (lower is better)
Translates to: SLEGPKLPNPPH*AATWTSPEVCD
Trigger: ATCACAGACCTCAGGAGATGTCCATGTGGCAGCCCAGTGTGGAGGATTCGGCAGCTTTGGACCTTCGAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp AGGCTGGTCATGACGTACTGCTGCGCCAGCTTCATCTaGCTGATGAGCTCGCCTAAGTCGGAGTTCAGCAGC +
Preference number: 6 (lower is better)
Translates to: RLVMTYCCASFI*LMSSPKSEFSS
Trigger: GCTGCTGAACTCCGACTTAGGCGAGCTCATCAGCAAGATGAAGCTGGCGCAGCAGTACGTCATGACCAGCCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 90 bp TGGTGGAGCTGCAGGATCTGGCTTCCCCACAGGCTGATAGATGTGTaGGTTTCCAGTCGGACCCTGAAAACTCCCGTCTTCCCTGTCGAT +
Preference number: 6 (lower is better)
Translates to: WWSCRIWLPHRLIDV*VSSRTLKTPVFPVD
Trigger: ATCGACAGGGAAGACGGGAGTTTTCAGGGTCCGACTGGAAACCAACACATCTATCAGCCTGTGGGGAAGCCAGATCCTGCAGCTCCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 72 bp TCGGACCCTGAAAACTCCCGTCTTCCCTGTCGATGCTaGCTCGAGAGAGCCTCACATCAGGTTTCAGGAATC +
Preference number: 6 (lower is better)
Translates to: SDPENSRLPCRC*LERASHQVSGI
Trigger: GATTCCTGAAACCTGATGTGAGGCTCTCTCGAGGCAGCATCGACAGGGAAGACGGGAGTTTTCAGGGTCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 72 bp TTCTTATACTCCTGCTGCAGGCTGGTCATGACGTACTaGTGCGCCAGCTTCATCTTGCTGATGAGCTCGCCT +
Preference number: 6 (lower is better)
Translates to: FLYSCCRLVMTY*CASFILLMSSP
Trigger: AGGCGAGCTCATCAGCAAGATGAAGCTGGCGCAGCAGTACGTCATGACCAGCCTGCAGCAGGAGTATAAGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 72 bp GGTTTCAGGAATCGCTCTTCCTTCTCCAGCCAGCGCTaGTCTTCTTCCATTTCCTGCTGCTGTCGGATTAGC +
Preference number: 6 (lower is better)
Translates to: GFRNRSSFSSQR*SSSISCCCRIS
Trigger: GCTAATCCGACAGCAGCAGGAAATGGAAGAAGACCAGCGCTGGCTGGAGAAGGAAGAGCGATTCCTGAAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp TGCAGGATCTGGCTTCCCCACAGGCTGATAGATGTGTaGGTTTCCAGTCGGACCCTGAAAACTCCCGTCTTC +
Preference number: 6 (lower is better)
Translates to: CRIWLPHRLIDV*VSSRTLKTPVF
Trigger: GAAGACGGGAGTTTTCAGGGTCCGACTGGAAACCAACACATCTATCAGCCTGTGGGGAAGCCAGATCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 90 bp TCTGTGATTCCACAATTCTGTCTGGTCCAGAAGAGATGCCTGACCTaGGTAAATGCTGCCAGCCATGGCTGGGATTCCATGGGAACCCGG +
Preference number: 6 (lower is better)
Translates to: SVIPQFCLVQKRCLT*VNAASHGWDSMGTR
Trigger: CCGGGTTCCCATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAGACAGAATTGTGGAATCACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS TCA 72 bp GGTGTGTGGGATTGCAGCCTTTGTCTGTCAGGTAACTaGTCCCTTCTTCTGGGCCGATTGCCAATTCCACAG +
Preference number: 6 (lower is better)
Translates to: GVWDCSLCLSGN*SLLLGRLPIPQ
Trigger: CTGTGGAATTGGCAATCGGCCCAGAAGAAGGGATCAGTTACCTGACAGACAAAGGCTGCAATCCCACACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 72 bp AGAGACCTGGTAGTGATTGGTCTGGACCATGTGCTGTaGGCTGGGATAAAATCCTTCACTGGATCTCGGGCT +
Preference number: 6 (lower is better)
Translates to: RDLVVIGLDHVL*AGIKSFTGSRA
Trigger: AGCCCGAGATCCAGTGAAGGATTTTATCCCAGCCCACAGCACATGGTCCAGACCAATCACTACCAGGTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227395.2
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS CCA 72 bp CAGGCCAACTTCCTTCACCATAGGGACGTACTCTTCTaGAGGAGCTGGCTGGATTTTGCTGGACATCTCGAT +
Preference number: 6 (lower is better)
Translates to: QANFLHHRDVLF*RSWLDFAGHLD
Trigger: ATCGAGATGTCCAGCAAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCTATGGTGAAGGAAGTTGGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp CCACAATTCTGTCTGGTCCAGAAGAGATGCCTGACCTaGGTAAATGCTGCCAGCCATGGCTGGGATTCCATG +
Preference number: 6 (lower is better)
Translates to: PQFCLVQKRCLT*VNAASHGWDSM
Trigger: CATGGAATCCCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAGACAGAATTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS CAA 72 bp ATAGGGACGTACTCTTCTGGAGGAGCTGGCTGGATTTaGCTGGACATCTCGATGACAGCCTTCACTAGGCCT +
Preference number: 6 (lower is better)
Translates to: IGTYSSGGAGWI*LDISMTAFTRP
Trigger: AGGCCTAGTGAAGGCTGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 90 bp TGGCAACGCCCGTTCACCTTCTTTCTGGGGTCTGATGATGAAAGATaGTGTGGCTCCATTCACCAGCCGGCAGTATCCATCAATCAGGTC +
Preference number: 6 (lower is better)
Translates to: WQRPFTFFLGSDDER*CGSIHQPAVSINQV
Trigger: GACCTGATTGATGGATACTGCCGGCTGGTGAATGGAGCCACACAATCTTTCATCATCAGACCCCAGAAAGAAGGTGAACGGGCGTTGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 90 bp TCCTTCACCATAGGGACGTACTCTTCTGGAGGAGCTGGCTGGATTTaGCTGGACATCTCGATGACAGCCTTCACTAGGCCTGTCACATTT +
Preference number: 6 (lower is better)
Translates to: SFTIGTYSSGGAGWI*LDISMTAFTRPVTF
Trigger: AAATGTGACAGGCCTAGTGAAGGCTGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCTATGGTGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 72 bp TCTGTGATTCCACAATTCTGTCTGGTCCAGAAGAGATaGCTGACCTTGGTAAATGCTGCCAGCCATGGCTGG +
Preference number: 6 (lower is better)
Translates to: SVIPQFCLVQKR*LTLVNAASHGW
Trigger: CCAGCCATGGCTGGCAGCATTTACCAAGGTCAGGCATCTCTTCTGGACCAGACAGAATTGTGGAATCACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000227686.2
ENSMUST00000239146.2
CDS CCA 72 bp TTCACCATAGGGACGTACTCTTCTGGAGGAGCTGGCTaGATTTTGCTGGACATCTCGATGACAGCCTTCACT +
Preference number: 6 (lower is better)
Translates to: FTIGTYSSGGAG*ILLDISMTAFT
Trigger: AGTGAAGGCTGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCTATGGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 72 bp TTCCTTCACCATAGGGACGTACTCTTCTGGAGGAGCTaGCTGGATTTTGCTGGACATCTCGATGACAGCCTT +
Preference number: 6 (lower is better)
Translates to: FLHHRDVLFWRS*LDFAGHLDDSL
Trigger: AAGGCTGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCCTCCAGAAGAGTACGTCCCTATGGTGAAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp GCCGTCACGGTCAGAGGCTCAGGAGCACCAGCGATTTaGAGTTGTAGCATTCCTTTCCTGTCTTTGTCTTCA +
Preference number: 6 (lower is better)
Translates to: AVTVRGSGAPAI*SCSIPFLSLSS
Trigger: TGAAGACAAAGACAGGAAAGGAATGCTACAACTCAAAATCGCTGGTGCTCCTGAGCCTCTGACCGTGACGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp CCGTTCACCTTCTTTCTGGGGTCTGATGATGAAAGATaGTGTGGCTCCATTCACCAGCCGGCAGTATCCATC +
Preference number: 6 (lower is better)
Translates to: PFTFFLGSDDER*CGSIHQPAVSI
Trigger: GATGGATACTGCCGGCTGGTGAATGGAGCCACACAATCTTTCATCATCAGACCCCAGAAAGAAGGTGAACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp ACAGCCTTCACTAGGCCTGTCACATTTTCATATACCTaGTCATTGGACCGGTCAAGGTTGGCAGTGGGAGGG +
Preference number: 6 (lower is better)
Translates to: TAFTRPVTFSYT*SLDRSRLAVGG
Trigger: CCCTCCCACTGCCAACCTTGACCGGTCCAATGACAAGGTATATGAAAATGTGACAGGCCTAGTGAAGGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 72 bp GTCTCTGACACAGAGACTGCATGTGTCCGCATGCCTTaGTTTTCACTGTTGGCCAACTTTGGTATTGATGGC +
Preference number: 6 (lower is better)
Translates to: VSDTETACVRMP*FSLLANFGIDG
Trigger: GCCATCAATACCAAAGTTGGCCAACAGTGAAAAGCAAGGCATGCGGACACATGCAGTCTCTGTGTCAGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS GCA 72 bp ACTCCTGACACAGAGACTGCATGTGTCCGCATGCCTTaGTTTTCACTGTTGGCCAACTTTGGTATTGATGGC +
Preference number: 6 (lower is better)
Translates to: TPDTETACVRMP*FSLLANFGIDG
Trigger: GCCATCAATACCAAAGTTGGCCAACAGTGAAAAGCAAGGCATGCGGACACATGCAGTCTCTGTGTCAGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS TCA 72 bp TTCCTCATCGATGATCTCTGCATAGTCATCTGTCTCTaGCACAGAGACTGCATGTGTCCGCATGCCTTGCTT +
Preference number: 6 (lower is better)
Translates to: FLIDDLCIVICL*HRDCMCPHALL
Trigger: AAGCAAGGCATGCGGACACATGCAGTCTCTGTGTCAGAGACAGATGACTATGCAGAGATCATCGATGAGGAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS TCA 72 bp TGGTCGAGGGCATGGTGTATGTGTCTTCCTCATCGATaGTCTCTGCATAGTCATCTGTCTCTGACACAGAGA +
Preference number: 6 (lower is better)
Translates to: WSRAWCMCLPHR*SLHSHLSLTQR
Trigger: TCTCTGTGTCAGAGACAGATGACTATGCAGAGATCATCGATGAGGAAGACACATACACCATGCCCTCGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS TCA 72 bp CTGGAGGAGCTGGCTGGATTTTGCTGGACATCTCGATaGCAGCCTTCACTAGGCCTGTCACATTTTCATATA +
Preference number: 6 (lower is better)
Translates to: LEELAGFCWTSR*QPSLGLSHFHI
Trigger: TATATGAAAATGTGACAGGCCTAGTGAAGGCTGTCATCGAGATGTCCAGCAAAATCCAGCCAGCTCCTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 72 bp CATCTGTCTCTGACACAGAGACTGCATGTGTCCGCATaGCTTGCTTTTCACTGTTGGCCAACTTTGGTATTG +
Preference number: 6 (lower is better)
Translates to: HLSLTQRLHVSA*LAFHCWPTLVL
Trigger: CAATACCAAAGTTGGCCAACAGTGAAAAGCAAGGCATGCGGACACATGCAGTCTCTGTGTCAGAGACAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
CDS CAA 72 bp AGCCAAAGCTGGATTCTCTGGGCTCAGGTACACGCCTaGATGTACATCTCCAAACTGACCTTCTCCAATACA +
Preference number: 6 (lower is better)
Translates to: SQSWILWAQVHA*MYISKLTFSNT
Trigger: TGTATTGGAGAAGGTCAGTTTGGAGATGTACATCAAGGCGTGTACCTGAGCCCAGAGAATCCAGCTTTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 90 bp AGGAACTTCTCTCTCACGCTGTCCGAAGTACAGTTTTTACATGTTTaGATTGCAACAGCCAAAGCTGGATTCTCTGGGCTCAGGTACACG +
Preference number: 6 (lower is better)
Translates to: RNFSLTLSEVQFLHV*IATAKAGFSGLRYT
Trigger: CGTGTACCTGAGCCCAGAGAATCCAGCTTTGGCTGTTGCAATCAAAACATGTAAAAACTGTACTTCGGACAGCGTGAGAGAGAAGTTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 72 bp GGGCATGGTGTATGTGTCTTCCTCATCGATGATCTCTaGATAGTCATCTGTCTCGTCCCCACTAATTTCATC +
Preference number: 6 (lower is better)
Translates to: GHGVCVFLIDDL*IVICLVPTNFI
Trigger: GATGAAATTAGTGGGGACGAGACAGATGACTATGCAGAGATCATCGATGAGGAAGACACATACACCATGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS CCA 72 bp CATGCCAGTACCCAGGTGAGTCTTAGTACTCGAACTTaGTGTGTGATTCAAGTTTGGGTCAAGATAAGCAGC +
Preference number: 6 (lower is better)
Translates to: HASTQVSLSTRT*CVIQVWVKISS
Trigger: GCTGCTTATCTTGACCCAAACTTGAATCACACACCAAGTTCGAGTACTAAGACTCACCTGGGTACTGGCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226466.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2
CDS CCA 72 bp TTGTCTTCACTGTTTGAGTACTGGATGGTCTGCACTTaGTTAAAGTCTGCTAGGTGTGTGGGATTGCAGCCT +
Preference number: 6 (lower is better)
Translates to: LSSLFEYWMVCT*LKSARCVGLQP
Trigger: AGGCTGCAATCCCACACACCTAGCAGACTTTAACCAAGTGCAGACCATCCAGTACTCAAACAGTGAAGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 72 bp ATAGTCATCTGTCTCGTCCCCACTAATTTCATCCGTTaGAGGAGGTTCAAGAGAACAGAAGACCAAAGGGAG +
Preference number: 6 (lower is better)
Translates to: IVICLVPTNFIR*RRFKRTEDQRE
Trigger: CTCCCTTTGGTCTTCTGTTCTCTTGAACCTCCTCCAACGGATGAAATTAGTGGGGACGAGACAGATGACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239146.2
CDS TCA 72 bp CTCTCACGCTGTCCGAAGTACAGTTTTTACATGTTTTaGTTGCAACAGCCAAAGCTGGATTCTCTGGGCTCA +
Preference number: 6 (lower is better)
Translates to: LSRCPKYSFYMF*LQQPKLDSLGS
Trigger: TGAGCCCAGAGAATCCAGCTTTGGCTGTTGCAATCAAAACATGTAAAAACTGTACTTCGGACAGCGTGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS TCA 72 bp TCAATTCGACCGATCACATCATTGTTCTTCACTCCTTaGAAAGGCTTCACGCCATGCATCAGTATCTCCCAC +
Preference number: 6 (lower is better)
Translates to: SIRPITSLFFTP*KGFTPCISISH
Trigger: GTGGGAGATACTGATGCATGGCGTGAAGCCTTTTCAAGGAGTGAAGAACAATGATGTGATCGGTCGAATTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 72 bp CTGTCTTTGTCTTCACTGTTTGAGTACTGGATGGTCTaGACTTGGTTAAAGTCTGCTAGGTGTGTGGGATTG +
Preference number: 6 (lower is better)
Translates to: LSLSSLFEYWMV*TWLKSARCVGL
Trigger: CAATCCCACACACCTAGCAGACTTTAACCAAGTGCAGACCATCCAGTACTCAAACAGTGAAGACAAAGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 72 bp CAAGTAACGAATTCTCAACTCATATTTCCACTCCTCTaGTGGGTGGGCGAGTTCATATTTCTCCCTCACACT +
Preference number: 6 (lower is better)
Translates to: QVTNSQLIFPLL*WVGEFIFLPHT
Trigger: AGTGTGAGGGAGAAATATGAACTCGCCCACCCACCAGAGGAGTGGAAATATGAGTTGAGAATTCGTTACTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226791.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2
CDS CAA 90 bp TCAGGAGCACCAGCGATTTTGAGTTGTAGCATTCCTTTCCTGTCTTaGTCTTCACTGTTTGAGTACTGGATGGTCTGCACTTGGTTAAAG +
Preference number: 6 (lower is better)
Translates to: SGAPAILSCSIPFLS*SSLFEYWMVCTWLK
Trigger: CTTTAACCAAGTGCAGACCATCCAGTACTCAAACAGTGAAGACAAAGACAGGAAAGGAATGCTACAACTCAAAATCGCTGGTGCTCCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CCA 72 bp AGCATCTCCATGCCTGATAATACTGGCCCAGGTGGTTaGCTCACTACTGCTTTCAAAATAATGAAAGACCTT +
Preference number: 6 (lower is better)
Translates to: SISMPDNTGPGG*LTTAFKIMKDL
Trigger: AAGGTCTTTCATTATTTTGAAAGCAGTAGTGAGCCAACCACCTGGGCCAGTATTATCAGGCATGGAGATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226466.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2
CDS CAA 72 bp TTCAATTCGACCGATCACATCATTGTTCTTCACTCCTaGAAAAGGCTTCACGCCATGCATCAGTATCTCCCA +
Preference number: 6 (lower is better)
Translates to: FNSTDHIIVLHS*KRLHAMHQYLP
Trigger: TGGGAGATACTGATGCATGGCGTGAAGCCTTTTCAAGGAGTGAAGAACAATGATGTGATCGGTCGAATTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 90 bp ACAGAAATGATCCAACTTGACCCAAGGGCACACTTGAAGCACTCTTaGTCAAATCTGTACACAGGAGAAAGAATCTCAAAGAATTTCAGG +
Preference number: 6 (lower is better)
Translates to: TEMIQLDPRAHLKHS*SNLYTGERISKNFR
Trigger: CCTGAAATTCTTTGAGATTCTTTCTCCTGTGTACAGATTTGACAAAGAGTGCTTCAAGTGTGCCCTTGGGTCAAGTTGGATCATTTCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS GCA 72 bp TTCAGGATGCTTTCTTCTCTATTAAGGTTGGCAAACTaGCTGAATGTTTGCTGGATCAGCTTTCTTAGTGTT +
Preference number: 6 (lower is better)
Translates to: FRMLSSLLRLAN*LNVCWISFLSV
Trigger: AACACTAAGAAAGCTGATCCAGCAAACATTCAGGCAGTTTGCCAACCTTAATAGAGAAGAAAGCATCCTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp ATCCACACGTCACTAGCTGAGGTAAAACGTCGAAAATaGATTGACTCTGGAGCCATCCATTTAATAGGTAAT +
Preference number: 6 (lower is better)
Translates to: IHTSLAEVKRRK*IDSGAIHLIGN
Trigger: ATTACCTATTAAATGGATGGCTCCAGAGTCAATCAATTTTCGACGTTTTACCTCAGCTAGTGACGTGTGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp CAAACAACCCAACTTCAAAGCTATTTCTTGGTCTACTaGATCAGCTATTTCTTGCATGTAGTCACTCTTCAC +
Preference number: 6 (lower is better)
Translates to: QTTQLQSYFLVY*ISYFLHVVTLH
Trigger: GTGAAGAGTGACTACATGCAAGAAATAGCTGATCAAGTAGACCAAGAAATAGCTTTGAAGTTGGGTTGTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226791.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2
CDS CAA 72 bp TCAAAGAATTTCAGGATGCTTTCTTCTCTATTAAGGTaGGCAAACTGCCTGAATGTTTGCTGGATCAGCTTT +
Preference number: 6 (lower is better)
Translates to: SKNFRMLSSLLR*ANCLNVCWISF
Trigger: AAAGCTGATCCAGCAAACATTCAGGCAGTTTGCCAACCTTAATAGAGAAGAAAGCATCCTGAAATTCTTTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 90 bp CCTAATTTCCAAACAACCCAACTTCAAAGCTATTTCTTGGTCTACTaGATCAGCTATTTCTTGCATGTAGTCACTCTTCACCTGTTGATA +
Preference number: 6 (lower is better)
Translates to: PNFQTTQLQSYFLVY*ISYFLHVVTLHLLI
Trigger: TATCAACAGGTGAAGAGTGACTACATGCAAGAAATAGCTGATCAAGTAGACCAAGAAATAGCTTTGAAGTTGGGTTGTTTGGAAATTAGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226791.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2
CDS CAA 90 bp GAAAGAATCTCAAAGAATTTCAGGATGCTTTCTTCTCTATTAAGGTaGGCAAACTGCCTGAATGTTTGCTGGATCAGCTTTCTTAGTGTT +
Preference number: 6 (lower is better)
Translates to: ERISKNFRMLSSLLR*ANCLNVCWISFLSV
Trigger: AACACTAAGAAAGCTGATCCAGCAAACATTCAGGCAGTTTGCCAACCTTAATAGAGAAGAAAGCATCCTGAAATTCTTTGAGATTCTTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110036.11
ENSMUST00000226988.3
ENSMUST00000239146.2
CDS CAA 72 bp CAAAGCTATTTCTTGGTCTACTTGATCAGCTATTTCTaGCATGTAGTCACTCTTCACCTGTTGATAGAAGAA +
Preference number: 6 (lower is better)
Translates to: QSYFLVYLISYF*HVVTLHLLIEE
Trigger: TTCTTCTATCAACAGGTGAAGAGTGACTACATGCAAGAAATAGCTGATCAAGTAGACCAAGAAATAGCTTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110036.11
ENSMUST00000226791.2
ENSMUST00000226988.3
ENSMUST00000228180.3
ENSMUST00000239146.2