Pregenerated sensors for PTHLH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048776Ensembl transcript IDs: ENSMUST00000052296.9, ENSMUST00000204197.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGTTTCCTaGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTACAGGCA | + |
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Preference number: 1 (lower is better) Translates to: LGKREKYSHDPCAVS*GDSLIPMHLQYVQA Trigger: TGCCTGTACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| 3UTR CCA 72 bp | AGGGAAAAATATTCACATGACCCATGTGCAGTTTCCTaGGGAGACAGTTTGATCCCAATGCATTTACAGTAT | + |
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Preference number: 3 (lower is better) Translates to: REKYSHDPCAVS*GDSLIPMHLQY Trigger: ATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGGTCATGTGAATATTTTTCCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| 3UTR-3UTR CAA 90 bp | TATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCCTGGGGAGACAGTTaGATCCCAATGCATTTACAG | + |
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Preference number: 3 (lower is better) Translates to: YGNSDRNNWISLGKREKYSWGDS*IPMHLQ Trigger: CTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGA...ATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR TCA 90 bp | CCCATGTGCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTTCTGCCCTCATCGTCTaGCCCAAACCGCACGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: PMCSFLGRQFDPNAFTVCSALIV*PKPHGV Trigger: CACCCCGTGCGGTTTGGGTCAGACGATGAGGGCAGA...ACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR TCA 90 bp | GCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTACAGGCATCTGCCCTCATCGTCTaGCCCAAACCGCACGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: AVSWGDSLIPMHLQYVQASALIV*PKPHGV Trigger: CACCCCGTGCGGTTTGGGTCAGACGATGAGGGCAGA...TGCCTGTACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | CCCATGTGCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTTCCGCGATCAGATGGTaGAGGAAGAAACGGCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: PMCSFLGRQFDPNAFTVCSAIRW*RKKRRR Trigger: GCGCCGCCGTTTCTTCCTCCACCATCTGATCGCGGA...ACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | GCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTACAGGCATGTTGGGAGCAGGTTTaGAGTTGGGGGACACCTCCG | + |
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Preference number: 4 (lower is better) Translates to: AVSWGDSLIPMHLQYVQACWEQV*SWGTPP Trigger: CGGAGGTGTCCCCCAACTCCAAACCTGCTCCCAACA...TGCCTGTACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | ATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGGAGGGCCTGGAGGTGTaGGGCAGGGGGTCCTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: IIGLALAKGKNIHMTHVQEGLEV*GRGSSS Trigger: GCTTGAGGACCCCCTGCCCCACACCTCCAGGCCCTC...CTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | CCCATGTGCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTATCTCCGCGATCAGATaGTGGAGGAAGAAACGGCGG | + |
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Preference number: 4 (lower is better) Translates to: PMCSFLGRQFDPNAFTVCISAIR*WRKKRR Trigger: CCGCCGTTTCTTCCTCCACCATCTGATCGCGGAGAT...ACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | CCCATGTGCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTGCACGGGGTGGTTTTTaGTGTTGGGAGCAGGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: PMCSFLGRQFDPNAFTVCARGGF*CWEQVW Trigger: CCAAACCTGCTCCCAACACCAAAAACCACCCCGTGC...ACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | CCCATGTGCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTCCAAACCGCACGGGGTaGTTTTTGGTGTTGGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: PMCSFLGRQFDPNAFTVCPNRTG*FLVLGA Trigger: TGCTCCCAACACCAAAAACCACCCCGTGCGGTTTGG...ACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | TTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGTTTCCTGGGCCAAACCGCACGGGGTaGTTTTTGGTGTTGGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: LALAKGKNIHMTHVQFPGPNRTG*FLVLGA Trigger: TGCTCCCAACACCAAAAACCACCCCGTGCGGTTTGG...CCCAGGAAACTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | TATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATGAGGGCCTGGAGGTGTaGGGCAGGGGGTCCTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: YGNSDRNNWISLGKREKYEGLEV*GRGSSS Trigger: GCTTGAGGACCCCCTGCCCCACACCTCCAGGCCCTC...ATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR TCA 90 bp | GCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTACAGGCATTGTCATGCAGTAGCTaGTGTTCAGACACAGCGCGT | + |
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Preference number: 4 (lower is better) Translates to: AVSWGDSLIPMHLQYVQALSCSS*CSDTAR Trigger: ACGCGCTGTGTCTGAACATCAGCTACTGCATGACAA...TGCCTGTACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR GCA 90 bp | CCCATGTGCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTCCTGAGTTAGGTATCTaGCCTCATCGTCTGACCCAA | + |
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Preference number: 4 (lower is better) Translates to: PMCSFLGRQFDPNAFTVCPELGI*PHRLTQ Trigger: TTGGGTCAGACGATGAGGGCAGATACCTAACTCAGG...ACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR GCA 90 bp | GCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTACAGGCACCTGAGTTAGGTATCTaGCCTCATCGTCTGACCCAA | + |
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Preference number: 4 (lower is better) Translates to: AVSWGDSLIPMHLQYVQAPELGI*PHRLTQ Trigger: TTGGGTCAGACGATGAGGGCAGATACCTAACTCAGG...TGCCTGTACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR GCA 90 bp | CCCATGTGCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTAGTCTTGGATGGACTTaGCCTTGTCATGCAGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: PMCSFLGRQFDPNAFTVCSLGWT*PCHAVA Trigger: AGCTACTGCATGACAAGGGCAAGTCCATCCAAGACT...ACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGCACATGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR TCA 90 bp | TTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGTTTCCTGGGACCTTGTTGGTTTCCTaGGTTAGGTATCTGCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: LALAKGKNIHMTHVQFPGTLLVS*VRYLPS Trigger: TGAGGGCAGATACCTAACTCAGGAAACCAACAAGGT...CCCAGGAAACTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | TATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCCGCGATCAGATGGTaGAGGAAGAAACGGCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: YGNSDRNNWISLGKREKYSAIRW*RKKRRR Trigger: GCGCCGCCGTTTCTTCCTCCACCATCTGATCGCGGA...ATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | ATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGATCTCCGCGATCAGATaGTGGAGGAAGAAACGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: IIGLALAKGKNIHMTHVQISAIR*WRKKRR Trigger: CCGCCGTTTCTTCCTCCACCATCTGATCGCGGAGAT...CTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | ATTATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATACTCGCAGCTGTGCTTaGCCAGGCAGACCGAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: IMVTVTGIIGLALAKGKNTRSCA*PGRPSP Trigger: AGGACTCGGTCTGCCTGGCCAAGCACAGCTGCGAGT...ATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | TATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATACTCGCAGCTGTGCTTaGCCAGGCAGACCGAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: YGNSDRNNWISLGKREKYTRSCA*PGRPSP Trigger: AGGACTCGGTCTGCCTGGCCAAGCACAGCTGCGAGT...ATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | TATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTGTTGGGAGCAGGTTTaGAGTTGGGGGACACCTCCG | + |
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Preference number: 4 (lower is better) Translates to: YGNSDRNNWISLGKREKYCWEQV*SWGTPP Trigger: CGGAGGTGTCCCCCAACTCCAAACCTGCTCCCAACA...ATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | AGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCACGGGGTGGTTTTTaGTGTTGGGAGCAGGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: RNNWISLGKREKYSHDPCARGGF*CWEQVW Trigger: CCAAACCTGCTCCCAACACCAAAAACCACCCCGTGC...ACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | TTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGTTTCCTGGGACGTCTCCACCTTGTTaGTTTCCTGAGTTAGGTATC | + |
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Preference number: 4 (lower is better) Translates to: LALAKGKNIHMTHVQFPGTSPPC*FPELGI Trigger: GATACCTAACTCAGGAAACCAACAAGGTGGAGACGT...CCCAGGAAACTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR TCA 90 bp | AGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTTTGTCATGCAGTAGCTaGTGTTCAGACACAGCGCGT | + |
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Preference number: 4 (lower is better) Translates to: RNNWISLGKREKYSHDPCLSCSS*CSDTAR Trigger: ACGCGCTGTGTCTGAACATCAGCTACTGCATGACAA...ACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR TCA 90 bp | ATTATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATTCTTCCCGGGTGTCTTaGGTGGCTGTTCTTTGTACG | + |
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Preference number: 4 (lower is better) Translates to: IMVTVTGIIGLALAKGKNSSRVS*VAVLCT Trigger: CGTACAAAGAACAGCCACTCAAGACACCCGGGAAGA...ATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | ATTATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATCTGATTTCGGCTGTGTaGATCTCCGCGATCAGATGG | + |
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Preference number: 4 (lower is better) Translates to: IMVTVTGIIGLALAKGKNLISAV*ISAIRW Trigger: CCATCTGATCGCGGAGATCCACACAGCCGAAATCAG...ATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | AGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGGTGGTTTTTGGTGTTaGGAGCAGGTTTGGAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: RNNWISLGKREKYSHDPCGGFWC*EQVWSW Trigger: CCAACTCCAAACCTGCTCCCAACACCAAAAACCACC...ACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | TATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATCCCGGGTGTCTTGAGTaGCTGTTCTTTGTACGTCTC | + |
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Preference number: 4 (lower is better) Translates to: YGNSDRNNWISLGKREKYPGCLE*LFFVRL Trigger: GAGACGTACAAAGAACAGCCACTCAAGACACCCGGG...ATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | ATTATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATCCCGGGTGTCTTGAGTaGCTGTTCTTTGTACGTCTC | + |
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Preference number: 4 (lower is better) Translates to: IMVTVTGIIGLALAKGKNPGCLE*LFFVRL Trigger: GAGACGTACAAAGAACAGCCACTCAAGACACCCGGG...ATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CCA 90 bp | ATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGACGTCTCCACCTTGTTaGTTTCCTGAGTTAGGTATC | + |
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Preference number: 4 (lower is better) Translates to: IIGLALAKGKNIHMTHVQTSPPC*FPELGI Trigger: GATACCTAACTCAGGAAACCAACAAGGTGGAGACGT...CTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR GCA 90 bp | ATTATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATAGTCTTGGATGGACTTaGCCTTGTCATGCAGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: IMVTVTGIIGLALAKGKNSLGWT*PCHAVA Trigger: AGCTACTGCATGACAAGGGCAAGTCCATCCAAGACT...ATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR GCA 90 bp | ATTATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATTTTTCTCCTGTTCTCTaGGTTTCCCAGGCTTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: IMVTVTGIIGLALAKGKNFSPVL*VSQACL Trigger: AAGGCAAGCCTGGGAAACGCAGAGAACAGGAGAAAA...ATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS TCA 90 bp | CGGCGGCGCAAGTCTTGGATGGACTTGCCCTTGTCATGCAGTAGCTaGTGTTCAGACACAGCGCGTTTGAGCCTGCGGCCAAGCCCCTCC | + |
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Preference number: 5 (lower is better) Translates to: RRRKSWMDLPLSCSS*CSDTARLSLRPSPS Trigger: GGAGGGGCTTGGCCGCAGGCTCAAACGCGCTGTGTCTGAACATCAGCTACTGCATGACAAGGGCAAGTCCATCCAAGACTTGCGCCGCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CCA 90 bp | TTGGAGTTGGGGGACACCTCCGAGGTAGCTCTGATTTCGGCTGTGTaGATCTCCGCGATCAGATGGTGGAGGAAGAAACGGCGGCGCAAG | + |
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Preference number: 5 (lower is better) Translates to: LELGDTSEVALISAV*ISAIRWWRKKRRRK Trigger: CTTGCGCCGCCGTTTCTTCCTCCACCATCTGATCGCGGAGATCCACACAGCCGAAATCAGAGCTACCTCGGAGGTGTCCCCCAACTCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CCA 90 bp | TCCGAGGTAGCTCTGATTTCGGCTGTGTGGATCTCCGCGATCAGATaGTGGAGGAAGAAACGGCGGCGCAAGTCTTGGATGGACTTGCCC | + |
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Preference number: 5 (lower is better) Translates to: SEVALISAVWISAIR*WRKKRRRKSWMDLP Trigger: GGGCAAGTCCATCCAAGACTTGCGCCGCCGTTTCTTCCTCCACCATCTGATCGCGGAGATCCACACAGCCGAAATCAGAGCTACCTCGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CCA 90 bp | CCGCGATCAGATGGTGGAGGAAGAAACGGCGGCGCAAGTCTTGGATaGACTTGCCCTTGTCATGCAGTAGCTGATGTTCAGACACAGCGC | + |
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Preference number: 5 (lower is better) Translates to: PRSDGGGRNGGASLG*TCPCHAVADVQTQR Trigger: GCGCTGTGTCTGAACATCAGCTACTGCATGACAAGGGCAAGTCCATCCAAGACTTGCGCCGCCGTTTCTTCCTCCACCATCTGATCGCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CCA 90 bp | GAGGTAGCTCTGATTTCGGCTGTGTGGATCTCCGCGATCAGATGGTaGAGGAAGAAACGGCGGCGCAAGTCTTGGATGGACTTGCCCTTG | + |
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Preference number: 5 (lower is better) Translates to: EVALISAVWISAIRW*RKKRRRKSWMDLPL Trigger: CAAGGGCAAGTCCATCCAAGACTTGCGCCGCCGTTTCTTCCTCCACCATCTGATCGCGGAGATCCACACAGCCGAAATCAGAGCTACCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS TCA 90 bp | GTCTTGAGTGGCTGTTCTTTGTACGTCTCCACCTTGTTGGTTTCCTaGGTTAGGTATCTGCCCTCATCGTCTGACCCAAACCGCACGGGG | + |
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Preference number: 5 (lower is better) Translates to: VLSGCSLYVSTLLVS*VRYLPSSSDPNRTG Trigger: CCCCGTGCGGTTTGGGTCAGACGATGAGGGCAGATACCTAACTCAGGAAACCAACAAGGTGGAGACGTACAAAGAACAGCCACTCAAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS GCA 90 bp | GTTCTTTGTACGTCTCCACCTTGTTGGTTTCCTGAGTTAGGTATCTaGCCTCATCGTCTGACCCAAACCGCACGGGGTGGTTTTTGGTGT | + |
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Preference number: 5 (lower is better) Translates to: VLCTSPPCWFPELGI*PHRLTQTARGGFWC Trigger: ACACCAAAAACCACCCCGTGCGGTTTGGGTCAGACGATGAGGGCAGATACCTAACTCAGGAAACCAACAAGGTGGAGACGTACAAAGAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | TTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGTTTCCTGGGGGAGCAGGTTTGGAGTaGGGGGACACCTCCGAGGTA | + |
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Preference number: 5 (lower is better) Translates to: LALAKGKNIHMTHVQFPGGAGLE*GDTSEV Trigger: TACCTCGGAGGTGTCCCCCAACTCCAAACCTGCTCC...CCCAGGAAACTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | GCAGTTTCCTGGGGAGACAGTTTGATCCCAATGCATTTACAGTATGTACAGGCACGCACGGGGTGGTTTTaGGTGTTGGGAGCAGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: AVSWGDSLIPMHLQYVQARTGWF*VLGAGL Trigger: CAAACCTGCTCCCAACACCAAAAACCACCCCGTGCG...TGCCTGTACATACTGTAAATGCATTGGGATCAAACTGTCTCCCCAGGAAACTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | AGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTCACTCGCAGCTGTGCTaGGCCAGGCAGACCGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: RNNWISLGKREKYSHDPCHSQLC*ARQTES Trigger: GGACTCGGTCTGCCTGGCCAAGCACAGCTGCGAGTG...ACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | ATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGGGAGCAGGTTTGGAGTaGGGGGACACCTCCGAGGTA | + |
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Preference number: 5 (lower is better) Translates to: IIGLALAKGKNIHMTHVQGAGLE*GDTSEV Trigger: TACCTCGGAGGTGTCCCCCAACTCCAAACCTGCTCC...CTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | ATTATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATCACTCGCAGCTGTGCTaGGCCAGGCAGACCGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: IMVTVTGIIGLALAKGKNHSQLC*ARQTES Trigger: GGACTCGGTCTGCCTGGCCAAGCACAGCTGCGAGTG...ATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | AGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGTGTTGGGAGCAGGTTaGGAGTTGGGGGACACCTCC | + |
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Preference number: 5 (lower is better) Translates to: RNNWISLGKREKYSHDPCVLGAG*ELGDTS Trigger: GGAGGTGTCCCCCAACTCCAAACCTGCTCCCAACAC...ACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | TATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATGTGTTGGGAGCAGGTTaGGAGTTGGGGGACACCTCC | + |
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Preference number: 5 (lower is better) Translates to: YGNSDRNNWISLGKREKYVLGAG*ELGDTS Trigger: GGAGGTGTCCCCCAACTCCAAACCTGCTCCCAACAC...ATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | AGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTCGCACGGGGTGGTTTTaGGTGTTGGGAGCAGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: RNNWISLGKREKYSHDPCRTGWF*VLGAGL Trigger: CAAACCTGCTCCCAACACCAAAAACCACCCCGTGCG...ACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | TTAGCCTTGGCAAAAGGGAAAAATATTCACATGACCCATGTGCAGTTTCCTGGGTTGAGTGGCTGTTCTTaGTACGTCTCCACCTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LALAKGKNIHMTHVQFPGLSGCS*YVSTLL Trigger: CAACAAGGTGGAGACGTACAAAGAACAGCCACTCAA...CCCAGGAAACTGCACATGGGTCATGTGAATATTTTTCCCTTTTGCCAAGGCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS-3UTR CAA 90 bp | ATTATGGTAACAGTGACAGGAATAATTGGATTAGCCTTGGCAAAAGGGAAAAATGGGTGGTTTTTGGTGTaGGGAGCAGGTTTGGAGTTG | + |
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Preference number: 5 (lower is better) Translates to: IMVTVTGIIGLALAKGKNGWFLV*GAGLEL Trigger: CAACTCCAAACCTGCTCCCAACACCAAAAACCACCC...ATTTTTCCCTTTTGCCAAGGCTAATCCAATTATTCCTGTCACTGTTACCATAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS TCA 72 bp | TGTCATGCAGTAGCTGATGTTCAGACACAGCGCGTTTaGGCCTGCGGCCAAGCCCCTCCACCGAACGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: CHAVADVQTQRV*ACGQAPPPNAR Trigger: GCGGGCGTTCGGTGGAGGGGCTTGGCCGCAGGCTCAAACGCGCTGTGTCTGAACATCAGCTACTGCATGACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CCA 72 bp | CAGGGGGTCCTCAAGCAGGCCACTCGCAGCTGTGCTTaGCCAGGCAGACCGAGTCCTTCGCTTCTTTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: QGVLKQATRSCA*PGRPSPSLLFL Trigger: GAGAAAAAGAAGCGAAGGACTCGGTCTGCCTGGCCAAGCACAGCTGCGAGTGGCCTGCTTGAGGACCCCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CCA 72 bp | GGGGACACCTCCGAGGTAGCTCTGATTTCGGCTGTGTaGATCTCCGCGATCAGATGGTGGAGGAAGAAACGG | + |
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Preference number: 6 (lower is better) Translates to: GDTSEVALISAV*ISAIRWWRKKR Trigger: CCGTTTCTTCCTCCACCATCTGATCGCGGAGATCCACACAGCCGAAATCAGAGCTACCTCGGAGGTGTCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CCA 72 bp | CTGATTTCGGCTGTGTGGATCTCCGCGATCAGATGGTaGAGGAAGAAACGGCGGCGCAAGTCTTGGATGGAC | + |
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Preference number: 6 (lower is better) Translates to: LISAVWISAIRW*RKKRRRKSWMD Trigger: GTCCATCCAAGACTTGCGCCGCCGTTTCTTCCTCCACCATCTGATCGCGGAGATCCACACAGCCGAAATCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CCA 72 bp | GCTCTGATTTCGGCTGTGTGGATCTCCGCGATCAGATaGTGGAGGAAGAAACGGCGGCGCAAGTCTTGGATG | + |
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Preference number: 6 (lower is better) Translates to: ALISAVWISAIR*WRKKRRRKSWM Trigger: CATCCAAGACTTGCGCCGCCGTTTCTTCCTCCACCATCTGATCGCGGAGATCCACACAGCCGAAATCAGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CCA 72 bp | TATCTGCCCTCATCGTCTGACCCAAACCGCACGGGGTaGTTTTTGGTGTTGGGAGCAGGTTTGGAGTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: YLPSSSDPNRTG*FLVLGAGLELG Trigger: CCCCAACTCCAAACCTGCTCCCAACACCAAAAACCACCCCGTGCGGTTTGGGTCAGACGATGAGGGCAGATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS GCA 72 bp | ACGTCTCCACCTTGTTGGTTTCCTGAGTTAGGTATCTaGCCTCATCGTCTGACCCAAACCGCACGGGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: TSPPCWFPELGI*PHRLTQTARGG Trigger: ACCACCCCGTGCGGTTTGGGTCAGACGATGAGGGCAGATACCTAACTCAGGAAACCAACAAGGTGGAGACGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS GCA 72 bp | GGAGGAAGAAACGGCGGCGCAAGTCTTGGATGGACTTaGCCTTGTCATGCAGTAGCTGATGTTCAGACACAG | + |
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Preference number: 6 (lower is better) Translates to: GGRNGGASLGWT*PCHAVADVQTQ Trigger: CTGTGTCTGAACATCAGCTACTGCATGACAAGGGCAAGTCCATCCAAGACTTGCGCCGCCGTTTCTTCCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS GCA 72 bp | CAGACCGAGTCCTTCGCTTCTTTTTCTCCTGTTCTCTaGGTTTCCCAGGCTTGCCTTTCTTCTTCTTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: QTESFASFSPVL*VSQACLSSSSR Trigger: CCGGGAAGAAGAAGAAAGGCAAGCCTGGGAAACGCAGAGAACAGGAGAAAAAGAAGCGAAGGACTCGGTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS CAA 72 bp | TTCCCAGGCTTGCCTTTCTTCTTCTTCCCGGGTGTCTaGAGTGGCTGTTCTTTGTACGTCTCCACCTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: FPGLPFFFFPGV*SGCSLYVSTLL Trigger: CAACAAGGTGGAGACGTACAAAGAACAGCCACTCAAGACACCCGGGAAGAAGAAGAAAGGCAAGCCTGGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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| CDS TCA 72 bp | GGCTGTTCTTTGTACGTCTCCACCTTGTTGGTTTCCTaGGTTAGGTATCTGCCCTCATCGTCTGACCCAAAC | + |
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Preference number: 6 (lower is better) Translates to: GCSLYVSTLLVS*VRYLPSSSDPN Trigger: GTTTGGGTCAGACGATGAGGGCAGATACCTAACTCAGGAAACCAACAAGGTGGAGACGTACAAAGAACAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052296.9 ENSMUST00000204197.2 |
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